#NEXUS [written Thu Jul 23 10:55:48 EEST 2015 by Mesquite version 2.75 (build 564) at Eugene-PC/10.51.2.35] BEGIN TAXA; TITLE Taxa_for_28S_matrix; DIMENSIONS NTAX=18; TAXLABELS Phanerochaete_sordida_EU118653 Hyphoderma_litschaueri_DQ677496 Mutatoderma_mutatum_DQ677498 Hyphoderma_nemorale_AY586669 Mutatoderma_heterocystidium_DQ677495 Hyphoderma_moniliforme_KC928285 Hyphoderma_setigerum_FN907905 Hyphoderma_cremeoalbum_DQ677492 Hyphoderma_obtusum_AY586670 Hyphoderma_setigerum_AJ406511 Hyphoderma_nemorale_KC928281 Hyphoderma_moniliforme_KC928283 Hyphoderma_occidentale_DQ677499 Hyphoderma_roseocremeum_AY586672 Hyphoderma_nemorale_KJ885184 Hyphoderma_occidentale_AY586674 Hyphoderma_medioburiense_DQ677497 Hyphoderma_incrustatum_AY586668 ; END; BEGIN CHARACTERS; TITLE 28S_matrix; DIMENSIONS NCHAR=887; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Phanerochaete_sordida_EU118653 GATTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGCAGTCTTTGGCTGTCCGAGTTGTAATCTGGAGAAGCGTCTTCCGCGCTGGACCGTGTACAAGTC-TCCTGGAACGGAGCGTCGTAGAGGGTGAGAATCCCGTCTTTGACACGGACTACCAGTGCTTTGTGATGCGCTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAACTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCTGAAAGGGAAACGCTTGAAGTCAGTCGCGTTTGCTAGGACTCAG-CCTTGCCTCGGCTTGGTGCACTTCCTAGTAAACGGGCCAGCATCATTTTTGGCTGCG-GGAAAAAGGTCAGAGGAATGTGGCACCTTCGGGTGTGTCATAGCCTCTGGCTGCATACCGTGGCTGGGAGTGAGGAACTCAGCACGCCTTA-CGGCGGGGCTTCGGCCACC-TTCGTGCTTAGGATGCTGGCGTAATGGCTTTAAACGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTGTTTGGGTGGAAAACCCGAGCGCGTAATGAAAGTGAAA-GTTGGGACCTCTGTCGTGGAGGGCACCGACGCCCGGACCAGACCTTCGGTGACGGATCTGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACC Hyphoderma_litschaueri_DQ677496 GATTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGACAGTCTTTGGCTGTCCGAGTTGTAATCTGGAGAAGTGTTTTCCGCGCTGGACCGTGTACAAGTC-TCTTGGAACAGAGCGTCATAGAGGGTGAGAATCCCGTCTTTGACACGGACTACCAGTGCTTTGTGATGCGCTTTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCTGAAAGGGAAACGCTTG-AGTCAGTCGCGTTGTTCAGAACTCAG-CCTTACTTTTGTTTGGTGTATTTTCTGTTCGACGGGCCAGCATCAATTTTGACCATT-GGAAAAGGGCCAGAGGAATGTGGCACCTTCGGGTGTGTTATAGTCTTTGGTCGCATACAATGGTTGGGATTGAGGATCTCAGCATGCCTTT-TGGCCGGGGTTCGCCCACG-TTCATGCTTAGGATGCTGGCGTAATGGCTTTAAACGACC?GTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTGTTTGGGTGGAAAACCCGAGCGCGTAATGAAAGTGAAA-GTTGGGATCCCTGTCGTGGGGAGCACCGACGCCCGGACCAGACCTTCTGTGACGGCTCCGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACC Mutatoderma_mutatum_DQ677498 GATTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGCAGTCTTTGGCTGTCCGAGTTGTAGTCTGGAGAAGCGTTTTCCGCGTTGGACCGTGTATAAGTC-TCTTGGAACAGAGCGTCATAGAGGGTGAGAATCCCGTCTTTGACACGGACTACCAATGCTTTGTGATGCGCTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCGTTCAGAACTCAA-CCTGGCTTTTGCTTGGTGTAATTTCTGCGCGACGGGCCAGCATCAATTTTGATCATT-GGAAAAAGTCCAGAGGAATGTGGCACCTTCGGGTGTGTTATAGCCTTTGGTCGTATACAATGGTTGGGATTGAGGATCTCAGCACGCCTTTATGGTCGGGGTTCGCCCACG-TTCGTGCTTAGGATGCTGGCGTAATGGCTTTAAACGACC?GTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTGTTTGGGTGGAAAACCCGAGCGCGTAATGAAAGTGAAA-GTTGGGATCTCTGTCATGGAGAGCACCGACGCCCGGACCAGACCTTTTGTGACGGTTCCGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACC Hyphoderma_nemorale_AY586669 GATTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGCAGTCTTTGGCTGTCCGAGTTGTAGTCTGGAGAAGCGTTTTCCGTGYTGGACCGTGTACAAGTC-CCTTGGAATAGGGCGTCATAGAGGGTGAGAATCCCGTCTTTGACACGGACTGCCAATGCTTTGTGATGCGCTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCTGAAAGGGAAACGCTTGAAGTCAGTCGCGTTATTCAGAACTCAG-CCCTGCTTTCGCCTGGTGTATTTTCTGTTTGACGGGCCAGCATCAATTTTGATCATT-GGAGAAAGGCCAGAGGAATGTGGCACCTTCGGGTGTGTTATAGCCTTTGGTCGTATGCAATGGTTGGGATTGAGGAATACAGCATGCCTTTATGGTCGGGGTTCGCCCACG-TTCATGCTTAGGATGCTGGCGTAATGGCTTTAAACGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTATTTGGGTGGAAAACCCGAGTGCGCAATGAAAGTGAAA-GTTGGGATCCCTGTCGTGGGGAGCACCGACGCCCGGACTTGACCTTCTGTGACGGATCCGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACC Mutatoderma_heterocystidium_DQ677495 GATTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGCAGTCTTTGGCTGTCCGAGTTGTAGTCTGGAGAAGCGTTTTCCGCGCTGGACCGTGTATAAGTC-TCTTGGAATAGAGCGTCATAGAGGGTGAGAATCCCGTCTTTGACACGGACTACCAGTGCTTTGTGATGCGCTCTCAAAGAGTCGAGTTGTTTGGGAATGCABCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCTGAAAGGGAAACGCTTGAAGTCAGTCGCGTTGGTCAGAACTCAATCTTAGTCTCGGCTTGGTGTATTTTCTGTTCAACGGGCCAGCATCAATTTTGATCATT-GGAAAAAGGCCAGAGGAATGTGGCATCTTCGGGTGTGTTATAGCCTCTGGTTGCATACAATGGTTGGGATTGAGGATCTCAGCATGCCTTTATGGTCGGGGTTCGCCCACG-TTCATGCTTAGGATGCTGGCGTAATGGCTTTAAACGACCTGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTGTTTGGGTGGAAAACCCGAGCGCGTAATGAAAGTGATA-GTTGGGATCCCTGTCGTGGGGAGCACCGACGCCCGGACCAGACCTTTTGTGACGGATCCGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATA-GGGCGAAAGACTAATCGAACC Hyphoderma_moniliforme_KC928285 GATTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGCAGTCTTTGGCTGTCCGAGTTGTAATCTGGAGAAGTGTTTTCCGCGCTGGACCGTGTACAAGTC-TCTTGGAACAGAGCGTCATAGAGGGTGAGAATCCCGTCTTTGACACGGACTACCAGTGCTTTGTGATGCGCTTTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTAAAGTCAGTCGCGTTATTCAGAACTCAG-CCTTACTTTTGTTTGGTGTATTTTCTGTTTGACGGGCCAGCATCAATTTCGATCATT-GGAAAAGGGCCAGAGGAATGTGGCACCTTCGGGTGTGTTATAGCCTTTGGTCGCATACAATGGTTGGGATTGAGGATCTCAGCATGCCTTT-TGGCCGGGGTTCGCCCACG-TTCATGCTTAGGATGCTGGCGTAATGGCTTTAAACGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTATTTGGGTGGAAAACCCGAGTGCGCAATGAAAGTGAAA-GTTGGGATCTTTGTCATGGGGAGCACCGACGCCCGGACCAGACCTTTTGTGACGGCTCCGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACC Hyphoderma_setigerum_FN907905 GATTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGCGGTCTTTGGCTGTCCGAGTTGTAATCTAGAGAAGCGTCTTCCGCGCTGGACCGTGTAYAAGTT-CTTTGGAATAGGACATCATGGAGGGTGAGAATCCCGTCTTTGACACGGACTCCCAGTGCTTTGTGATGCGCTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCTGAAAGGGAACCACTTGAAGTCAGTCGCGTTGTTCAGAACTCAG-CCTGGCTTTTGCTTGGTGTATTTTCTGTTTAACGGGCCAGCATCAATTTCGATCATT-GGAAAAAGGCCAGAGGAATGTGGCATCTTCGGGTGTGTTATAGACTCTGGTTGCATACAATGGTTGGGATTGAGGATCTCAGCATGCCTTT-TGGCCGGGGTTCGCCCACG-TTCATGCTTAGGATGCTGGCGTAATGGCTTTAAATGACC?GTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTGTTTGGGTGGAAAACCCGAGCGCACAATGAAAGTGAAA-GTCGAGATCCCTGTCGTGGGGAGCACCGACGCCCGGACCAGACCTTTTGTGACGGCTCCGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACC Hyphoderma_cremeoalbum_DQ677492 GATTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGCAGTCTTTGGCTGTCCGAGTTGTAGTCTGGAGAAGCGTCTTCCGCGTTGGACCGTGTATAAGTC-ACTTGGAATAGTGCATCATAGAGGGTGAGAATCCCGTCTTTGACACGGACTACCAGTGCTTTGTGATGCGCTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCTGAAAGGGAACCGCTTGAAGTCAGTCGCGTTATTCAGAACTCAG-CCTGGCTT--GCCTGGTGTATTTTCTGTTTGACGGGCCAGCATCAATTTCGATCATT-GGAAAAAGTCCAGAGGGATGTGGCACCTTCGGGTGTGTTATAACCTTTGGTCGCATACAATGGTTGGGATTGAGGATCTCAGCATGCCTTT-TGGCCGGGGTTCGCCCACG-TTCATGCTTAGGATGCTGGCGTAATGGCTTTAATCGACCVGTCTTGAAACACGGACCAAGGAGTCTAACATACCTGCGAGTGTTTGGGTGGCAAACCCGAGCGCGTAATGAAAGTGATA-ATTGGGATCCCTGTCGTGGGGAGCACTGATGCCTGGACCAGACCTTTTGTGACGGATCTACGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACC Hyphoderma_obtusum_AY586670 GATTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGCAGTCTTTGGCTGTCCGAGTTGTAGTCTGGAGAAGTGTTTTCCGTGCTGGACCGTGTACAAGTCTCCTTGGAATAGGGCGTCATAGAGGGTGAGAATCCCGTCTTTGACACGGACTGCCAGTGCTTTGTGATGCGCTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCTGAAAGGGAAACGCTTGAAGTCAGTCGCGTTGTTCAGAACTCAG-CCTTGCTTCCGCTTGGTGCATTTTCTGTTCGACGGGCCAGCATCAATTTTGATCATT-GGAAAAAGGTCTTGGGAATGTGGCATCTTCGGATGTGTTATAGCCCTGGGCTGCATACAATGGTTGGGATTGAGGATCTCAGCACGCCTTTATGGTCGGGGTTCGCCCACG-TTCGTGCTTATGATGCTGGCGTAATGGCTTTAAACGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTGTTTGGGTGGAAAACCCGAGCGCGTAATGAAAGTGAAA-GTTGGGATCTCTGTCGTGGAGAGCACCGACGCCCGGACCAGACCTTTTGTGACGGCTCCGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACC Hyphoderma_setigerum_AJ406511 GATTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGCGGTCTTTGGCTGTCCGAGTTGTAATCTAGAGAAGTGTTTTCCGCGCTGGACCGTGTACAAGTT-CCTTGGAATAGGACATCATGGAGGGTGAGAATCCCGTCTTTGACACGGACTACCAGTGCTTTGTGATGCGCTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCTGAAAGGGAAACACTTGAAGTCAGTCGCGTTATTCAGAACTCAG-CCTGGCTCCCGCTTGGTGTATTTTCTGTTTGACGGGCCAGCATCAATTTTGACCATT-GGAAAAAGGCCAGAGGAATGTGGCATCTTCGGGTGTGTTATAGCCTCTGGTTGCATACAATGGTTGGGATTGAGGATCTCAGCATGCCTTT-TGGCCGGGGTTCGCCCACG-TTCATGCTTAGGATGCTGGCGTAATGGCTTTAAATGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTGTTTGGGTGGAAAACCCGAGCGCGCAATGAAAGTGAAA-GTCGGGATCTCTGTCGTGGGGAGCACCGACGCCCGGACCAGACCTTTTGTGACGGCTCCGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACC Hyphoderma_nemorale_KC928281 GATTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGCAGTCTTTGGCTGTCCGAGTTGTAGTCTGGAGAAGCGTTTTCCGTGTTGGACCGTGTACAAGTC-CCTTGGAATAGGGCGTCATAGAGGGTGAGAATCCCGTCTTTGACACGGACTGCCAATGCTTTGTGATGCGCTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCTGAAAGGGAAACGCTTGAAGTCAGTCGCGTTATTCAGAACTCAG-CCTGGCTTTCGCCTGGTGTATTTTCTGTTTGACGGGCCAGCATCAATTTTGACCATT-GGAGAAAGGCCAGAGGAATGTGGCACCCTCGGGTGTGTTATAGCCTTTGGTCGTATGCAATGGTTGGGATTGAGGAATACAGCATGCCTTTATGGTCGGGGTTCGCCCACG-TTCATGCTTAGGATGCTGGCGTAATGGCTTTAAACGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTGTTTGGGTGGAAAACCCGAGCGCGTAATGAAAGTGAAAAGTTGGGATCCCTGTCGTGGGGAGCACCGACGCCCGGACTTGACCTTCTGTGACGGATCCGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATGGGGGCGAGGGACTAATCGAATC Hyphoderma_moniliforme_KC928283 GATTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGCAGTCTTTGGCTGTCCGAGTTGTAATCTGGAGAAGTGTTTTCCGCGCTGGACCGTGTACAAGTC-TCTTGGAACAGAGCGTCATAGAGGGTGAGAATCCCGTCTTTGACACGGACTACCAGTGCTTTGTGATGCGCTTTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTTATTCAGAACTCAG-CCTTACTTTTGTTTGGTGTATTTTCTGTTTGACGGGCCAGCATCAATTTCGATCATT-GGAAAAGGGCCAGAGGAATGTGGCACCTTCGGGTGTGTTATAGCCTTTGGTCGCATACAATGGTTGGGATTGAGGATCTCAGCATGCCTTT-TGGCCGGGGTTCGCCCACG-TTCATGCTTAGGATGCTGGCGTAATGGCTTTAAACGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTATTTGGGTGGAAAACCCGAGTGCGCAATGAAAGTGAAA-GTTGGGATCTTTGTCATGGGGAGCACCGACGCCCGGACCAGACCTTTTGTGACGGCTCCGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACC Hyphoderma_occidentale_DQ677499 GATTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGCAGTC-TTGACTGTCCGAGTTGTAGTCTGGAGAAGCGTCTTCCGCGCTGGACCGTGTACAAGTT-CCTTGGAATAGTACATCATAGAGGGTGAGAATCCCGTCTTTGACACGGACTACCAGTGCTTTGTGATGCGCTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCTGAAAGGGAAACGCTTGAAGTCAGTCGCGTTGTTCAGAACTCAG-CCTGGCTTCTGCCTGGTGTATTTTCTGTTCGACGGGCCAGCATCAATTTTGATCATTGGGAAAAAGGCCAGGGGAATGTGGCACCCTCGGGTGTGTTATAGCCTCTGGTTGCATACAATGGTTGGGATTGAGGATCTCAGCATGCCTT--TGGTCGGGGTTCGCCCACG-TTCATGCTTAGGATGCTGGCGTAATGGCTTTAAACGACCHTTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTGTTTGGGTGGAAAACCCGAGCGCGCAATGAAAGTGAAA-GTTGGGATCCCTGTCGTGGGGAGCACTGACGCCCGGACTTGACCTTCTGTGACGGATCCGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACC Hyphoderma_roseocremeum_AY586672 GATTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGCGGTCTTTGGCCGTCCGAGTTGTAGTCTGGAGAAGTGTTTTCCGTGCTGGACCGTGTACAAGTCTCCTTGGAATAGGGCGTCATAGAGGGTGAGAATCCCGTCTTTGACACGGACTGCCAGTGCTATGTGATGCGCTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCTGAAAGGGAAACGCTTGAAGTCAGTCGCGTTGTTCAGAACTCAG-CCTGGCCTCGGCCTGGTGCATTTTCTGTTCGACGGGCCAGCATCAATTTTGATCATT-GGAAAAAGGTCTCGGGAATGTGGCATCTTCGGATGTGTTATAGCCCTTGGCTGCATACAATGGTTGGGATTGAGGATCTCAGCACGCCTTTATGGTCGGGGTTCGCCCACG-TTCGTGCTTAGGATGCTGGCGTAATGGCTTTAAACGACC?GTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTGTTTGGGTGGAAAACCCGAGCGCGTAATGAAAGTGAAA-GTTGGGATCCCTGTCGCGGGGAGCACCGACGCCCGGACCAGACCTTCTGTGACGGTTCCGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACC Hyphoderma_nemorale_KJ885184 GATTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGCAGTCTTTGGCTGTCCGAGTTGTAGTCTGGAGAAGCGTTTTCCGTGTTGGACCGTGTACAAGTC-CCTTGGAATAGGGCGTCATAGAGGGTGAGAATCCCGTCTTTGACACGGACTGCCAATGCTTTGTGATGCGCTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCTGAAAGGGAAACGCTTGAAGTCAGTCGCGTTATTCAGAACTCAG-CCTGGCTTTCGCCTGGTGTATTTTCTGTTTGACGGGCCAGCATCAATTTTGATCATT-GGAGAAAGGTCAGAGGAATGTGGCACCTTCGGGTGTGTTATAGCCTTTGGTCGTATGCAATGGTTGGGATTGAGGAATACAGCATGCCTTTATGGTCGGGGTTCGCCCACG-TTCATGCTTAGGATGCTGGCGTAATGGCTTTAAACGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTGTTTGGGTGGAAAACCCGAGCGCGTAATGAAAGTGAAAGGTTGGGATCCCTGTCGTGGGGAGCACCGACGCCCGGACTTGAACTTCTGTGACGGATCCGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACC Hyphoderma_occidentale_AY586674 GATTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGACAGTC-TTGGCTGTCCGAGTTGTAGTCTGGAGAAGCGTCTTCCGCGCTGGACCGTGTACAAGTT-CCTTGGAATAGTACATCATAGAGGGTGAGAATCCCGTCTTTGACACGGACTACCAGTGCTTTGCGATGCGCTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCTGAAAGGGAAACGCTTGAAGTCAGTCGCGTTGTTCAGAACTCAG-CCTGGCTTCTGCCTGGTGTATTTTTTGTTCGACGGGCCAGCATCAATTTTGATCATT-GGAAAAAGGCCAGCGGAATGTGGCACCTTCGGGTGTGTTATAGCC-CTGGTTGCATACAATGGTTGGGATTGAGGATCTCAGCATGCCTT--TGGTCGGGGTTCGCCCACG-TTCATGCTTAGGATGCTGGCGTAATGGCTTTAAACGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTGTTTGGGTGGAAAACCCGAGCGCGCAATGAAAGTGAAA-GTTGGGATCCCTGTCGTGGGGAGCACTGACGCCCGGACTTGACCTTCTGTGACGGATCCGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACC Hyphoderma_medioburiense_DQ677497 GATTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGATAGTCTTTGGCTGTCCGAGTTGTAAACTGGAGAAGCATTTTCCGCGCTGGACCGTGTACAAGTC-TCTTGGAATAGAGCATCATAGAGGGTGAGAATCCCGTCTTTGACACGGACTGCCAGTGCTTTGTGATGTGCTTTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCTGAAAGGGAAACGCTTGAAGTCAGTCGTGTTGTTCAGAATTCAG-CCTGGTTTTGGCCTGGTGTATTTTCTGTTCGACGGGCCAGCATCAATTTTGATCATT-GGAAAAAGGTCTTGGGAATGTGGCATCCTCGGATGTGTTATAGCCCTTGGCTGCATACAATGGTTGGGATTGAGGAACTCAGCACGCCTTTATGGTCGGGGTTCGCCCACGTTTCGTGCTTAGGATGCTGGCGTAATGGCTTTAAACGACC?DTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTATTTGGGTGGAAAACCCGAGTGCGCAATGAAAGTGAAA-GTTGGGATCTCTGTCATGGGGAGCACCGACGCCCGGACCAGACCTTTTGTGACGGCTCCGCGGTAGAGCAAGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACC Hyphoderma_incrustatum_AY586668 GATTCCCCTAGTAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTAAAATCTGGTAGTCTTTGGCTGCCCGAGTTGTAGTCTGGAGAAGCGTTTTCCGTGCTGGACCGTGTACAAGTT-TCTTGGAATAGAACATCATAGAGGGTGAGAATCCCGTCTTTGACACGGACTACCAGTGCTTTGTGATGCGCTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCTGAAAGGGAAACACTTGAAGTCAGTCGCGTCGTTCAGAACTCAG-CCTGGCTTCTGCCTGGTGTAATTTTTGTTCGACGGGCCAGCATCAATTTCGACCATT-GGAAAAATTCCAGAGGAATGTGGCACCTCCGGGTGTGTTATAGCCTCTGGTTGTATACAGTGGTTGGGATTGAGGATCTCAGCATGCCTTT-TGGCCGGGGTTCGCCCACG-TTCATGCTTAGGATGCTGGCGTAATGGCTTTAAATGACC?GTCTTGAAACACGGACCAAGGAGTCTAACATGCGTGCGAGTGTTTGGGTGGAAAACCCGAGCGCGTAATGAAAGTGAAA-GTTGGGATCCCTGTCGTGGGGAGCACTGACGCCCGGACCAGACCTTCTGTGACGGTTCCGCGGTAGAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACC ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 887; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 887; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 887; END; BEGIN TREES; Title 'Trees from "2Hyphoderma28S.tre"'; LINK Taxa = Taxa_for_28S_matrix; TRANSLATE 1 Phanerochaete_sordida_EU118653, 2 Hyphoderma_litschaueri_DQ677496, 3 Mutatoderma_mutatum_DQ677498, 4 Hyphoderma_nemorale_AY586669, 5 Mutatoderma_heterocystidium_DQ677495, 6 Hyphoderma_moniliforme_KC928285, 7 Hyphoderma_setigerum_FN907905, 8 Hyphoderma_cremeoalbum_DQ677492, 9 Hyphoderma_obtusum_AY586670, 10 Hyphoderma_setigerum_AJ406511, 11 Hyphoderma_nemorale_KC928281, 12 Hyphoderma_moniliforme_KC928283, 13 Hyphoderma_occidentale_DQ677499, 14 Hyphoderma_roseocremeum_AY586672, 15 Hyphoderma_nemorale_KJ885184, 16 Hyphoderma_occidentale_AY586674, 17 Hyphoderma_medioburiense_DQ677497, 18 Hyphoderma_incrustatum_AY586668; TREE 28S_con50majrule = (1:0.1268620972901217,5:0.01467763282843227,((2:0.00570210770669676,(6:0.002434526117868097,12:0.00101907536507586):0.01860838002905316):0.01981042684061363,3:0.02921790310360402,(4:0.008531120938741595,11:0.01138757094031197,15:0.004776659573918657):0.0301910106415553,(((7:0.02087863355333819,10:0.008737924236974677):0.02204716487345002,18:0.03066515694446926):0.007853312842681653,(13:0.006445385307372307,16:0.007385955371050364):0.01168816115415055):0.009314965443051286,8:0.04648582667621529,((9:0.01246371416062042,14:0.01439067877983765):0.005815188146303472,17:0.04500853542304854):0.02715741938505528):0.01187991937634613); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1437638148443; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 2110482141152902962; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 5754527449035234233; mqVersion 275; checksumv 0 3 701595100 null getNumChars 887 numChars 887 getNumTaxa 18 numTaxa 18 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 342951.0 sumSquares -3.2281802128991674E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1 errorReportedDuringRun; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 351; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1366 629; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #2110482141152902962 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #2110482141152902962; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; getTable; tell It; rowNamesWidth 344; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1015 562; setLocation -9 0; setFont SanSerif; setFontSize 18; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; showTrees 0 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 1; getWindow; tell It; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1015 562; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TreesList.TreesListWindow.ibeam; endTell; endTell; showWindow; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #2110482141152902962 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlockInt 0; toggleUseWeights off; endTell; setAssignedID 3171.1437637829111.1495921940007857836; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1015 562; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientRight; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #5754527449035234233 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 204; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1015 562; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;