#NEXUS BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=14; TAXLABELS Bos_taurus Canis_familiaris Felis_catus Tursiops_truncatus Equus_caballus Pteropus_vampyrus Myotis_lucifugus Ailuropoda_melanoleuca Homo_sapiens Macaca_mulatta Erinaceus_europaeus Neomys_fodiens Sorex_coronatus Crocidura_russula ; END; BEGIN CHARACTERS; TITLE ALAD_intron_10; LINK TAXA = Taxa; DIMENSIONS NCHAR=644; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Bos_taurus gtgagcatgcaggagttggggttttgacctgggccacagggactgataggcaccctgcccaaatagggaaataaagttaggggacagcctggagtcacctgtctggaaatgccaatgatctaaacag--acaggctggggaacggacatgaaactgcggggcagaaggt-gagcaatgaaccatgcagagccctcagttactttttgattttgagaccttgggcaagtcacttctct-aacttcagtgtccttgtctgtagactggggataagacagatggtgctggtcatcaaggggattaaatgagatgttgtgtaattggcatatgcatgtcatttcagaaatgagagctggttttgttggttagcacacagcgtggcgggggaactcacagcttgcctatttcccccactgtgcactttatacatggacacactgaggcccagaaagagaaaatgccttccccaaggtcacacagtgtatagagctaggactgaccagaactagactcgtcttaggtggtgataccctggggctgtgcctcttcatagtagccttcttcccaccccagccctcactcccagaaggtatttcccaagctgatgccctgcccc-----ctgcccgcttctttccccacacag Canis_familiaris -tgaacaggcggggctggggtttttgacctgggctacaggg-ctgatgggcactttgcccagagagggaaataaagt--tgagacagcctggcgtcgcatgcctggaaatagcagcgatctaaa------------gaggaggggacatggaaccgcagaacacagcatgcagcagtgaag---gaagaaccctctgtcactttttggttttgagaccttagctgagccatgtccgtgaacctcagagtccttatctgcaaacgggggataaaacacccgacattggttgtccggagaattgagtgagatgatatgtcattggcatatgctctccactctgcaaatgggagctggttttgttggtgtgcatacagcctgaggagggccctcacagcttactcatttc-cccaccttgcaccttatacgttggcaaac--aggcccagcaagcgaaaatgacttgcccagggtcgcacggtgtgcagagctgtaactgcccggagcttggcttatcttatgtcataatgcccacgagctgtgccccttcatggtagcagccttccacccccggccctcgctccccaaaggggtgcccagagctgatgccaggcttctcccccttcctgcatctgtcccc-cacag Felis_catus gtaaacaggccgggctggggtttttgacctgtgccacgggg-ctgatgggcactttgcctagaaagggaaataaagtcacgagacagcctagagccttatgcctggaaataccagtgatataacgaaacacagggtgaggaggggatgtggaattgcagaacagaacatggaacagggaagacagcagagctggctatta-attttggttttgagacctcagccaagccacttctgtgaacctcagtgtccttgtctataaactggggataaaatacctgatgctggctgtcaggaggattaaatgagatgatatataatcagcaaatgctcaccactccgtaaatgggaactggttttgttggtgt--gcacagcatcagaagggcacttataacttacttatttctcccgttgtgcattttatccggtggcaaactgaggcccagtaagagaaaatgacttgcccagggttacacactgtgcagagccttaactgaccggagctgggctcgtctcctgttgtgacacccacgggctgtgcctcttcatggtagtcgcctcccccacccggccctcactcccggaaggtgtgcccagagctgatgcctggcctctcccccttcctgcctctgtcccccgacag Tursiops_truncatus gtgagcaaggaggggtgggatttttgacatgtgccgcagggactgataggcactttgaccagatagggaaataaagtcatgagacagcctggagtctcatgcctggaaatgccagagatctaga------caggctggggaaaagacatgaaaccgcaggacagaatgtggaacagtgaagtacgcagagccctctgttattttttggttttgagaccttggccaagccacttctctaag-ttcagtgtccttgcctatgaactagggataagatagctggtgctggttgtcgggaggattaaatgagatgctatgtaattggcgtatgcttgtcacttcataaatgggagctggttttgttggtaagcatacagcgtggggagggaactcacagcttacctgtttcccccactgtgcatcttatacattggcaaactgaggcccagaaggagaaaatgccttccccgaggtcacacaacgtacagagctaggactcaccagaactgaactcggcttaggttgtgacacccgtgggctgtgcctcttcatggtagccttcttcccaccccggccctcactcccagaaggtattccccgagctgacgccctgccctccccccttcccgcttctctcccaacacag Equus_caballus gtaaacagctggaggcagg-tttttgacccgtaccactgggactaataggtactttgcccagagagggaagtgaaggcatgggacagcctagagtgttaggccgggaaatcccagtgatctgaacagacacaggttgaggaagagacgtggaactgcaaaatagaatgtcgaacggcgaaggaagcagagccctctgttactttttggttttgagaccttggccacggcccttctccgaacttcagtgccctcatctataaactagggctatgatacctggtgctggctgttgtggggattcagtgagctgatatgtcattggcatatgcctatcgccccatcaatgggagctggttttgttggtgtgcacacagcatgagaagggggcttacagctcgcctctttcccccactgtgcattttacacattggccgactgatgcccagaaagagaagatgacttgcctgtggtcacacaatgtgcagaactagacctgactagaactgggctcatcttatgttgcgacgaccccgggctgtgcctcttcatggtagccttctgccctccctggccttcactcccggaagatgtgttcagaactgatgccccacccctcccccttcttgcttctctgcccacacag Pteropus_vampyrus gtaagctggccgaggtggg-tttttgacccgtgccacatggactgataggtacttcattcagagaaggaattgaagtcgtgagacagcctggagtcttaggcctagaaataccagggatctaaacagacacaggctgaggaagagacatggaact--agaacagaacatggaacagtgaagaaagcagagccccct-----tttctgcttttgagaccttggcctagccacttctccgaacctcagtacctatatt---------gggataagatacctggtcctggttgttgtgtggattaaatgaga-gatatggaattggcatatgcttatcactccataattgggagctggttttgctgg-------------tgggaaaggaacttacagcttacctatttcccc------------------------aactgaagcccacacagagaagatgacttgcccacagtt------catacagagttagaaccaacaagagttgggctcgtcttatgttg-----cccaccgac--taccttttcacagtagccttcttccctcactggccctcactcccaggaagcgtgcccagagctgatgccctgccgctcccc-----tgcttctctccccatacag Myotis_lucifugus gtaagctggcaggggtggg-tttttgacctgtgacccacagactaataggcagtttgcccagagatggaaatgaagtcctgaaacagcctggagtcttgggcccagaggtaacagtgatctaaacagacacaggctgagaggaaaagacatgactgtagaacagaacatggaacagtgaagcaagcagagctctctattattttttggttgtgagaccttggcctagccacttctctgaacctcagt-------cctgtctatagtagataagatacctggtagtggttgtcatgtgggttaaatgagatgatatgtaattggcatatgttcatcactccataaatgcgagctggttttattggaatgcacacagtgtg-gaagggaacttacagcttatctgcttc-cccactgggcatttgattcattggcaaattgaggtccagaaagagaaaatgacttgtccacagtcacacaatctagagcgctagaattgactagcactgggctcgtcttacgttgtgaaacccactaactgtgcctcttcatagtagccttcttccccgc--ggccctcattcccagaaggtatgcccagagctgatgccccgtgccaccccttccctgtttctctccc-acaaag Ailuropoda_melanoleuca gtaaacagg------tggggtttccaacctgtgccacgggg-ctgatgggcactttacccagagagggaaataaagtcaggagacagcctggagtcttacgcctgggaatactggtgatctaaagagacccagggggaggagggggtgtggagctgcagaacaaaatgggcagcagtgaagacagcagagccttctgtcactttttggtgtcgagaccttagccaagccacttctgtgaacctcagcgtccttgtctgcaaaccggggataaaacacccgaggccggttgtctggagaattgcgtgagatgatatgtcattggcctgtgctcaccgctccacgagtgggagctggtggtgttggtgtgcacacagcatgggaagggccctgacgacgtactcatttcttgcgctgtgcgttttatacattggcaaactgaggcccagcaagagaaaatgacctgcccaggttcacacagtgcgcagagctatacctgcccggagctgggctcgtcttctgtcgtgacgcccatgggctgtggctctttgtggtagccgcctgccccctccggc------------agtgtgtgccccgaactgatgcccggcccctcccccttcccgcttctgtccccccgcag Homo_sapiens gtaggcaggcaagggtgggggttttgacctgcgccacagggactgataagcactctgcctagattggggaacgacgtcctgag--agcttgggatcttattccgggaattactagtgatctaaacagacacacactgaggaagagatatggaactgcagcatagaacacggcccggtgaagcaagcagagccc----ttcatttttggttgtgagaacgtgggcaagccacttctctgaacctcagtgtcctcacccataaactggggataagatacctggtgctggttgtcctgaggattaaatgaagtaata-------------------tcactccataaa-ggggactcattttgttagaatgcacacagcatgggaa-ggaacttgcctcttacctatttccttcactgtgcattttattctttggtaaactgaggccccaaaagaggaaatgacttgccca----------------agaaatagagtttcccaaagctgggctcgtctcatgtggtg-tgcccacaggctgtgcttcttcatggtagccttcttccccgcctggccttccatcgcagaaggtgtgctcagagctgatcagcgtccccccagcctttctgcatctctcccaacacag Macaca_mulatta gtaggcaggcaggggttggggttttgacctgtgccacagggactgataagcactctgcctagatcaaggaacgaagtcctgag--agcttggagtcttatttcgggaattactagtgatctaaacagacacacattgaggaagagatatggaactgcagcatagaacatgacatggtgaagcaagcagagcccttcattcatttttggttgtgagaatgtgggcaagccacttcttagaacctcagtgtcctcacccataaactggggacaagatacctggtgctgattgtcctgaggattaaatgaggtagta-------------------tcactccataaa-gggggctcattttgttagaacgtacacagcacaggaagggaacttgcatcttacctatatccttcactgtgcatattattctttggtaaactgaggtcccaagagagaaaatgacttgccca----------------agaaatacagctgcccaaagctggactcgtctcatgtggtg-tgcccacaggctgtgcctcttcatggtagccttcttccccgcctggccttccatcccagaaggtgtgctcggagctgatcaccgtccccc--gcctttccgcatctctcccaacacag Erinaceus_europaeus gtgagcagacagggcggggg----gggggggggttgtgggg-ctgaccgg----tcccacagaaaatgaaacaaagtcatatgacagcctagagatttacacctggaaatactggtgagttaagcagacacaggttgagaaagggagctggaaccacagagcagaacatgg-acagtgaagaaagcagagcctactattgtgttttggttttgagaacagagcctgttggctttgctgaacctcaatggcctcataactaagtgaaggataaggtagctggtgccggtagcgcagcgggttaagcgcggtggcgggggattggtataaggatcccactctgctagtgagaattgagtttactggtatgcacagggcatgtgaagagaactcacagcttgcctatatcctgcactgtgtatattatacactgacaaac--aggcctagaaagagaaaacaacttg-ccacagtctcgcaatatacagagcta----------------ggctcatcttt--ttgtgatgcccaggggctgtgcctcctcttggtagcctccctctaccaac---------tcccaggtgttgc-------------------aacctcctctccccggcttctctcccaacatag Neomys_fodiens gtgagcctgtggggcggggggatgccccccggggccctgggactcgcgggcact------------------------------------------------------------------------------------------------------------------aggcccagagagggagaccgcagcctctgttccccgttggctttgcaacacca-----gcacttgctgtgagtctcggca-tcccggctagcagctgggaacgggatgccgggtgc----------------aggctgaggtgat------------cgtgcgtgtctgtccctaaacaagagctggactgggcagcaggcatg----ctaaggacagagctgaccacggcagc-ccccccccactctgcatgttctccttt----------ggcccagaacgagcaggc--cacagcccacaccagactgtgt-------------------------------------------agacgtggcggctgtgcacctccctgagcacttcctccccttgctcgcccccactcctaccccccaccccccatactgactcctctcgccccccc---------------cacacacag Sorex_coronatus gtgagc----------------------ccggggccctgggactcacggtcact------------------------------------------------------------------------------------------------------------------tgagccagagaaggaacatgcagcctctgtgccttgtccactttgcagcccca-----gcacttccggggcgtctcagtggccccggctagaggccgggagagggatgccgggggc--------------acagccagaggcgat------------catgcacatctgtcctgaaac---agctggccgtgtcactaggcacggagtccaggttcagagctggcagcagccccacccccctgaccctgtgtggtctcctttggcagactagggcccagaaagagcaggc--tttgtccccaggcacac------------------------------------------------actcgcgggaactgggtccctccctaatggccttcctcccttgcctcccctcc----------------------------------------------------------------ag Crocidura_russula -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; END; BEGIN CHARACTERS; TITLE ASB6_intron_2; LINK TAXA = Taxa; DIMENSIONS NCHAR=1026; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Bos_taurus gtcctccggagcctggagggggggtggacagatggcttaggtgtggcctgggcgggggtggtcaagcctccaggctctgc---------------------------cctctctgtctcaggggtgatgcccgaggaagcccggtggcctccc-gcctgcaggtttcccagaggcccttaccgcctctgctc--ggagcaggtttgtcactgctcctgtcaggcgattgacttagcaaacttttccagctcccagttaagtccttgcttccattaatgcgaaaatggggctgctggcgctgtgcccagagctaagggaaagtaattttctgccgctggttctgagccac---------------------ggggagaggggggaaacagataag--acactgggcataaatcacagactgacggtgttggcgtccggctggtgtgcccgggaggtgctgagggagccatcttccttccctctttgttttgcccgggcgggagacaaggtcagccgggagacactcgggactgacttgttcccaaatgggggtttttgtgctgatacaggacgt-gccaggcgtatctttcctcccttttggaggacaggctcagaggctgctgggctcctgggaggtcaaggagctgg-----gggaggcattctgtagtcagtcacttgggagaccgctttgagcatttg---------------------------------ccccacagtt---------------gttttaggtcctattttacaaaa---gggactaaacccagattaagtacttgtc-cgtcattggaatgcccccagtacccgaacttaggcctgactccga-----gcaccctagcatccgacgaggacagctgtgtcctgacctcttatggtgccaggagc-------ccttgggttggagtgttggggctgggctgccaggcggtcctgggcctgtgagaatgtgctgatgggcaggactgatgtgagctgtgtctgcgccttcag Canis_familiaris gtcagctggagcccagagggggggtggataggtggcttaagtggggctctgccttgggtggccaagccttcaggcactgcttctcctgttctcctgggagccactttcctttttcttccatgggtggtgactaaggaacccc-----------cccctgtgggctttcagatggttcttaccacctctgcttcaagggcgagttggttgctgcttccaccatgtgattga-tcagcacacttg-------cccagctaaatcctgggttccattaacatgaaaatgtggttgctggcactgtgcccagagctcagggagagcaattttctgccacttattcagagccatctcgcatttttgttcatgccacaggaga-gggaaaaacacggaagtgacactgggtgtaaatcaagacagggctgggttagcttctagcccagagggccaggggatggggatggagccagtttacttctc----tggccttcttccagggtgggcagggtcagccaggagacatacagggctgacttgcgactgagt--tggtctttgagccgacacagcacatggccaggcacgcctcccctccccgtctgaggacaggctcagagggtgctaggctcctggagggctgaggagctgaggcacggggcctgttaggaagtcagtcatttggaga-ctgcttcgaggatgtggcggttactaccaggcttcagaagctgtcactccctagcagcctgagaagaggccccc--ttacagttccattttacagaa---gagactaaacccagacaggtgaggtgctgcgccactaggatgcccccaggatcctgacctaggtctgactccagagcctgtgcgctggcacctgatgaggatggctctgtcctgacccctcatggtgacagaagcctgggtccctcaggaaagagggctggggccga-----------------------------------------taggacttagacgagctgtgtctgtgcctgcag Felis_catus gtcagctggagcccggggggggggcgggtaggtggcttgagtgtggctgggcttcgggtggccacgtcttcaggcgcggctgttcttgttctctcgggagctgcctccctcttcctttcgcgggggaccactgaggcggccc-----------cccctg-----------------cttcccacctctggtccaagagcgagtttgttgctgcttccgccgtgtgactgattcagcaaactctcccggctcccagcgagatccctgcttccgttatcgtgaaaacgcggctggtggccctgtgcccagagcgcggggagagcaa-tttctgccgctcgttctgagccatctcacattttggctcacgccagagggag-ggggcaaacacagaagctacactgggtgtaagtcacggcaggaccgggttggcttctagcttctaagtgccggcggtggggatggaatcgttttcctctc-----tggcttgctcgccaggagggcggggtcaaccaggagaggttcagggctgacctgggaccagatgggggtctttgagctgacccaggctgtggccaggcgtgcctcccctccccatctgatgacaggcttagagggcgctagggtcctaggctcccggagggccggggggcgggggctgttacaaagtcagttacccgaaca-ctgctttgaggacgtggctgtcactagtggggttgaggagttgtcagtccccagccgcccgagaaggggcgccctcttagggttctgttttatagaagaggagagtaaacccagacagattagctgcccccccactggaacggcgccaggaccctgaccgagctctgactgcagagcttgcgctctagtgtctgatgaggacggccgcgtcctgacccctggtggtgccgggagcctgggccccccaggggggtgtgctggggctgagcccgaggccggtcctgggcccgcaaggaggtggtgataggcaggactgacatcagccgtgtctgtgccttcag Tursiops_truncatus gtcagctggagcccagagggggggtgggtaggtggcttaagtttggccctgctttgggtggccaagccttcggggtctgcttttactgttctcttgggagatacttccctctttatgtcacgggtgatgactaaggacacccggtggcctccccccctgcgggctttcaaatggcccttaaccacctctgatcaagagcgagtttgtcactgcttctaccatgtgattgctttagcaaactttcccagctcccagctaaatccctgcctccattaatgtgaaaatgtggctgctggcgctgtgcccagagctcagggaatgtaattttctgacactcgttctgagccaccttgcattcttgttcttgccacagggagaggggaaaacagataagactcactgggcataaatgacagcaggacgctgttggcttctagcttgt--gtgctgggggtggtgatggagccattattccttccctcttcgctttcacggagggcaggcagagtcggccaggagacatgcagggctgacttggggccgacttgggggttttgtgctgacacaggatgtggccaggcgtgtctcccctccccatttgaggacaggctcagaggcttctaggctcctggagggtcacagagctgaggtgggggaggcattgtgaagtcagccactgggagacccgctgtgagaacttggcttttattgcaagacttacggagctgtcactccccaacagccc--------------tgtttaggtcccattttacagaa---ggaactaagcccggattaagtacgatgtccataatcagaacagccccaggatccaaacctaggcctgactcca----------tgcactgtccgacgaagacagctgtgtcccgacccctcgtggtgctgggagc-------ccttaggtcggagcactgcggctgggctgccaggcggtcctgggcctgcgagaatgtgccgacaggcaggactgacgtaagctgtgtctgtgccctcag Equus_caballus gtcagctggaacccgaggggtgggtgggtggg-ggcccaagtgtgg---------------ccaggcctctgggctctgctttcactgttctcctaggagctagcgtcctccttcttccgtgggtgatgacgaaggaaacagggtggcctgccctcctggggacttgcagatggccgcagccacctctgctccgagagccagtttgttgctgcttctctcttgtgatggatttagcaaaccttcccagcccccagccaagtccccgcttccattaatgtgaaaatgtggctgctggccccgtgcccagagctaagggaaagtaattttctgccacttattctgagccatcttgcatttccgttcctgccataggga--gggggagacagataagccacgttgggtgtaagtcactgcagga-tgtgttggcttttagcttgtaagttccgtgggggcgggtagagccattttcctttcttctctggcttttgccaggagagggcag---------ggagacatgcaggg--ggactgtgaccgaat-ggggtctttgtgctgacacaggatgtgaccaggcccctctcccctccctatctgaggacaggctccgagactgctgggctcccggagcatcagggagcggaggagggggggctgttctgaagtccgtcacttgaagagccgctctgagaacttggctgttactgccgggcttaaggagccggcactcccaaacagcccgagaggagatgccctttcatggtcccatttcccagaggagggaagtaaacccaaacagattgagtgcctcgccactaaaatgcccccagggcctgaacccaggtctga--ctggaacccacgctctggcatcccctgaggacagctctgtcctgaccct-cacggtgaccggagcctgggcccttcaggtgggagtgctggggctgggctgccaggcgctcccgggcctgcgagaatgtgccg--------gactgacgtgagctgtgtccgtgccttcag Pteropus_vampyrus gtcagggggagcccgggggc----------------------------------------------------------------------------------------------------tgggtgacaac-aaggagacccggtggcctcccccccctgcgggttttaggtggcccttaccacctccggtccaagagcaagtttgttgccgcttctgccatgtgatgggtttagcagatattcccagctcccagccaattccctgctcccactaaggtggaaatgcagctgctggcactgtgcccgcgctcggggagggtacatttcttgccatttattctgagccgtcttgcatttctgttcatgccgtagggaggagggaaaacaggtagggcaccctgggcataaatcacggcgggaccctgtcggcccctagctcgtaagtgccgggggagctgatggagccatttgcctctcctgtctgcccttcccccagggcgggtggaaccgtccagcagatgtgcagggccgacctgc--cttgctgggggtcttcctgccaacacaggacgtggccaggcacgtctcccctccccatgtgaggacaggctccgagcctgctgagctcctggaggggcaaggagctgaggcagggggcccatcctggagtcagtcacttgaagccccgttttgcgaacgtggctgttgtcgccaggcttaaggagctgtccctccccgacagcccgagaggagatgcctttcgatggtcccattttacagaagaggaaactaaacccaaacagattaattactgtgccactagaacacccctgggccccgaacctggatctgactctagagcctgcgctgtagcacccgatgaggacagctccgttctgacccctgagggtgac---agttcaggcccctcaggtgggagtgccggg-ctgggctgccgggcggtcctgggcctgcaagaatgtgcccgtagttgggactgacatgagctatgtctgtgccctcag Myotis_lucifugus gtcag-gggagcccgcggggggggcgggcaggcggcttcagtgcggcc--gctctgggtggccaggcctctgggctctgcctgtc---ttctcttagca------------cttatttcatgggcgatggctacgga-ccccggcggcctccc--ccccacgggcttcagatggcccttagcacctccggcccaggagc-agcttgttgct-ctgctaccctgtgattgatttagcaaaccttcccagctccca-ctcattccctgcttccatcaaggtg-aaatgcagctgctggcactgtgcccagagctaagggaaggtcatttcctgccacttattctgagccatcttgcattttcgttcatcccacaggaagagggggaa-----------acactgggcctaagtcacagcgggactgtgctggcttctggcttgtaggtgctgcaggaggtgagggagccgttttcctttcctctctggcttttcacccacgagggcagggtcagccaggagacgtgtggggccgacttatgaccaaatggcggtctttgctctgacataggacatggccaggcatggctcctctcccc-tctgaggaccggctcagaggctgc-aggctcttggagggtcaaggagccgagggggtaagggtgttctgaagtcaggcgcttggagacccgctttgagaacgtaggtgccgtcgccaggcttgaggatctgggtgtcccgagtaacccgagaggagaggcccttgtatggtcccattttacagatgaggaaactgaacccaaacagattaagtacgtgcccactacaacac--ccaggacccgaacctaggcctga--ccagagcctgtgctggagcacccagtgaggacagctgtgctctgacccctccgggtgacagcagcccgggccgtcggggggggagtgccgggactgggctgccaggcggtcctggg--tgtgagaacgtgctgacaggactgacgagc--------tggctgtgccctcag Ailuropoda_melanoleuca gtcagctggagcccagagcgggagtggatgggcggcttaagtgtggct----------------------------ctgcctttcctgttctcttgggagccgcttcccttgttctgccgtgggtggcgaccgaggaacccc-----------cccctgtgggcttccaggtggctctgagcccctctggtccaagagcgagtctgttgctgcttctgccgtgtgactga-tcagcaaacttt-------cccagccaaatccccgcttccattaacgtgaaaatgcgggtgctggcgctgtgcccagagcccagggggggcactcttctgtcacttattctgagccatctcgcgtttttgctcatgccacagggagggggggaaacactgaagcgacgctgggtgtaagtcacggcagggcccagttagcttctagcctggaagagccagggacggagatggacccagtttcctttcctctctggctttctcccggggacaacagggtcagccaggagacaggcagggctggcttgtgaccgg-tgcgggtctttgagccgacacaggctgtggc-----------------------------caggctcagagggcgctcggctcccggcgg---------------------ggctgttaggaagtcagtcacctgggga----cttggacaacatggccgtta--------?????????ccccccccccccagcagcctgagaagaggtgccctcttccggctccgttttacagga---gaaactaaacgctgccctctagcctgcccccc-----------gcccccggacctgcccgaggccccactccagcgcctgcgctctggcctctgatggggacagctgt--cctgacccctcatgctgccagaagcctgggtccctcgggtgggagggccggggctgagctgcaggccggtgcgg--ccgggcaggactgac??????????gactgacaggggccgtgtctgtgcctttag Homo_sapiens gtcagcgagagccccg----ggggtgggcaggtggcttaaacgcggcccgacgctgggtggccatgtccccagccttggcttctaccatcctctgaggagtgacttccccctttatttcctgggtggcaactaaggaaactcggtggcctccccccctgcgggttttcacatggctcttcccacctctgttccaagagcgag--tgttgctgcttctaccatgtgattga-ttagcaaactttcccagctcccagattaatccccacttccattaatgcaaaaatgcggctgctggcactgtgcccagagctaagggaaggtaattttctgctacttactctgagccaatttgttttttttctcatgccgtagggagaggggaaaac----aggctgcattaggcataaatcaccacagga-caccctggctcctggctcctgagtgccagggatggagatggagccgagctcctttctctgtgtttttcagcccagggagggcagggttagtcggcagacaggcagggctgccttgtgacctaataggggcct--------------gagacagccaggcacgtctcctttccccatccgaagacgggcttggagtctgctgggctcctggagggtcaaggagctgagacgggaggccggttctgaagccagtgacttggaga-ccgcttggagaacctggctgttaccaccaggcctacaaagcagagccgcccagccattctgagagggtgcgcccttttatggtcccttcttacagaagaggaaactaaaccccaacagcttcagtagcgtgccactagaacaccccgagg-----------------------------gccctctagtatctggtgaggacagctctgtcctaacccttgatggtgacaggaggctgggccctttaggtgggagt-ttggggctgggctct-----ggtccggggcccataagaatgcg--gacagataggacccacatgagctgtgtctgcaccttcag Macaca_mulatta gtcagcgagagccccg----ggggtgggcaggcgacttaaacgtggctctgcgccgggtggccatgtccccagccttggcttttaccatcctctgaggagtgacttccccctttatttcctgggtggtgactaaggaatctcggtggcctcccatcctgcgggttttcacatggctctccccacctctgttccaagggcgggcgtgttgctgcttctaccatgtgattga-ttagcaaactttcccagctcccagagtaatccccacttccattaatgtgaaaatgcagctactggcattgtgcccagagctaagggaaggtaattttctgccacttactctgagccaatttgtttttttcctcatgccatagggagaggggaaaac----aggccgcattaggcataaatcaccacagaa-cacgctggcttccagcttctgagtgcgagggatggagatggagccatgctcctttctctctgtttttcaccccagggagggcagggttagtagggggacaggcagggctgccttgtgacctaatgggggcct--------------gagacagccaggcatgtctcctttccccatccaaagacaggcttggaggctgctgggctcctgga-gcccaaggagctgagacgggaggccagttctgaagccagtgacttggaga-ccgcttggagaacgtggctgttaccaccaggcctacagagcggagcagcccagccattctgagagtgcgcgcccttttatggtcccttcttacagaagaggaaattaaaccccaacagcttcagtagtgtgccactagaacaccccgagg-----------------------------gccctctagtatctggtgaggacagctctgtcctaacccttgatggtgacaggaggctgggccctttaggtgggagt-ttggggctgggctct-----ggtccagggcccatgagaatacg--gataggcaggacgcacacgagctgcatctgtgccttcag Erinaceus_europaeus gtcagctggag------gggtgggttgatggatggcccgagtgtggacacgctgtgggcaaccaggcccaaagga----------------tctgggcaactagttcccgctttaattcatgggtgatgactcagga------------ctactgtctgtggacctt-aggtggctctgaccacttctggatccagaatgagtttgttgctgcttcagccatgtgactgattgagcaaac---cccagctcccag-------cttgctcccattagca------------tgctggctttctgcccagagctaa-ggaaggtaattttctgccacttactctgagccatcttgtgtttttgttcgtgtt---------------------------gcatcatgcataaatcatggtgggaccaggctggcatctaggttgtgcacactgttgactggcaatgagccattttcct------------------ctcaagaagggcaggtgagcc---agaagtgcaggaccgacttgtgacccaac--gagtcactgtgctgtcacagggtgccaccaagtgcctctccctcccccccgctgagacaggct-----gtttctgagttttt--------------------------tactatctttttaatatttattttatttattccttt-----tgttgctcttgttgttttattgttgtagtcattattgttggataggacagagagaaatggag-----------------gcagagggggagagaaagcacctgcagacctgcttcaccactgcaagtggggagccagggctcaaaccaggatctgacgctggtccttgcgcttt-gcaccacctgtgcttaacctgcttccaactcccagtggtggctgaggagttgctacctgggacaggggtccgaagaccaagccgtctgccggtccccggccctgcagcacctgctgaaaggcaaaactgac----ggcttgtgtgtacttccag Neomys_fodiens gtcggctgtgg---------ggggcggggggccggctt-----------------------------------------------cctgtctctgggg-------ttcctgtctccctcctgggtgataacaaagg---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ccttgcagagccaggctggcagaaggccgtgtgg-----------------------------------------gggaaggtcacccgcctgtcccgagccatgcggctactgggttccgaaggggctgttgccccgggg---caccagcttcaggaaggggggcagtgctg------ggtgcgaggaaacccagtcggtgagggaggctgagcccagtaggttagg------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tcacgcccccagttgtggcagg------------------cggcgagcagggcccag----------ggcactgac----------------------------------------------tgcccgcag Sorex_coronatus ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Crocidura_russula ---gtctgcaa---------ggggtgcagcggggagt--------------------------------------------------------------------------c---------agggg----------------------------------------------------------------------------------------------------------------------ctggctcYca------------------------------------------caacacacccctagctctggg--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ctcacgggtacaggtcctgctgtgcgtcccttgg-----------------------------------------gggaaagtcagctgctacccacYctctggagggcagacatgctccaaggcagctaggttcttgca----ggggggcttcaggcacgggggttcttcct------gctaccaggagggtagtcatatgcagaaccccaagactccctgactcaa------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ccctggcccccag---------------------------------------------------------------------------------------------------------------------- ; END; BEGIN CHARACTERS; TITLE CSF2_intron_2; LINK TAXA = Taxa; DIMENSIONS NCHAR=734; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Bos_taurus gtaagatgcttctctctgacacaccttcccaaaggcctctgccctggggactgactccattttagacggacccttacagggttgtccgctttctctctagccagctggctgccagaaggagggttgcttagaa-------ggccttgcccctgtggcagtcatgtggactcctttactagctgagcagccatggacagacctagtgttcaagggtatcgaggtcaccaggggactg--------gcgggggttatgtcatgagacaggggctgtgggcttgggacactcactgtgccctgagaccaagctctgtg--gacaccgtgctggccactgaaggtcacagaagattttcaggaacaa-ctatgtctgcacaacagctttgggcaagccccccgcccccttcccccgaagggtggaaggacagcgatctccttctctgggggctgggaccctcttgagataccagatcaagggaatgtgtctgtgccggctggaggtggcctgagctgagtggtgaggggagtcagactcat--ctgtagtggatggggggacaaggctgtgtgtatgacagggcctagctgagcttagtcaggaacaatcctgtgcccctcccaggccctgctcttgggagagtgggatgagaacaggaagcagtgatggggaggatgtcctgggcccaccagagcacactcggccactgctcaccaaggaatggacatttcccacag Canis_familiaris gtaagatgcttctctctgacatgccttcccagagacctctaccgtggggggtggctccatttcacatggactctcatagggtggtcagtcctttctccagtcagctggctgtccagagggg----cctcgggaggccactggccttgcgcctgtagcagtcatgtgaactccttcattaactgagcagccatggacagacctagcattcaaggggccaggggtcaccaggggacaggtaggtaagtgggaattacttcaagacaca-gggctgtgagcttgggggactca--------tgagactaatctcggtggagacagagtgttggttacagagaggcacaga--gatttcaagaacaagccttgttcacatagcaggtggaggagatgccccactaccttctccctgaatggtgagggtatagggatctcctctcgtgggggctgggaccctcttgagatgcc------agggaatgtagttgtgctagctgagggtggcctgagctgaatggtg--------cagattcattttt-----------------------gcgtgtatgactggacctagc---------------atcatcctgtgcccctcccaagttctgctcttgggggacagggctgaggacaggaaaaagtgacaggaagagtgtcatatgcccaccagagggcacctgtccactactcaccaaggaatggacattctccacag Felis_catus gtaagatactcctctctgacacaccttcccagaggcctctaccttggggggtggctccattttagatggactctcacaa---agtccactttctctccagtcacctggctgccagaaggaggggtgttcaggtggccacgggccttgcccctgtggcagacatttaaactctttcgttagctgagcagccatggacagacctagcattcaagggggtgggagtcaccaggggacgggtaagtaagcaggagttactt-----------------------------------------tgagaccaagccctgtggagacagagtgctgactacagagaggcgcagaggtatttcagggtcaagccttgttcacatagcaggtctgggggatgtcccattccttactgcccgaatggttgggggatagcaacctccttccctggggactgggaccctcttgagatgcc------agggaatgtggctgtgctagctgaggggggcctgagctgaatggtg--------cagatttatgtttaca---------tgaacacagcagtatggatgactagacccggc---------------atcaccctgttcccctcccaaaccctactcctgg-ggacagggctgagaacaggaaagagtgacagggaggttgtcatgtgcccaccagagggcacttggccacttctcaccaaggaatggacgtttcccacag Tursiops_truncatus gtaagatac--ctctctgacacaacttctcaaaggcctcggccctggggagtgactccattttagatggactgtcacagggttgtccactttctctccagtcagctggttgccagaaggagggctgctcaggaggccactggctttgcccctgtggcagtcgtgtgagcttctttactagctgaccagccatggacagacctagcattcaaggggctaggggtcaccaggggacaggtgggtaagtgggagttatgtcatgagacaggggatgtggacatggggcactcactgtggcctgagaccaagccctgtg--gacacggtgctggctactgacgggcacagaaggatttcaggaacaaactttgctcacacagcaggtctgggcgagggtccccctccttccccctgaatgctgggaggacagtgacctctttttctggagactgggaccctcttgagatg-caggccaagggaatgtggctgtattggctgggaatgg-ctgagctgagtggtgaggagagtcagactcatgcctgcagtggacagggggacagggcagtgtgtataaccgggtccagctgagattagtcaagaatagtcctgtgcccctcccaggccctgctcttggtagatagggatgagaacaggaaggagtgatggggaggatgtcctgtgcctaccagagcacacttggccactgctcaccaaagaatggacatttcccccag Equus_caballus gtaagatgcttctctctgacacactttcccagaggcctctgccttagggggtggctccattttagaaggaccctcacagggttgtccactttctctccagtcagcaggctgtcagaaggag---tgcccaggagaccactggccttgcccctgtggcaatcatgtgaactcctttattagctgagcagccatggacagacctagcattcaaggggtcaggggtgaccagagaacagttgactaagcggaagttacttcgtgagacaggggctatggagttggggcactcgatgtgccctgaaagtgagctctgtggagacacagtgctggctacggaggggcacagaggggtttcaggaacaagccttactcacagagcaagtccaagtgatgtcccgctcctttctccctgaatggtttggggatagtgacctcatttcctgggggctgggaccttcttgagatgccagaccaagggaatgtgactgtgttggctgagggtggcctgagctgaacggcgagaagagtcagactcatgcctgcagtggacagggagacagggtagtacgtgggactggacccagctgagactagtcaggaa---tcaagtgcccctcccaggccctactggtggaggacagagatgagaacaggaaagaatgataaggaaggtgtcctgtgcccaccgaagggcacttggccactgcttaccaagaaacggacgtttcccacag Pteropus_vampyrus gtaagatgcct-----------------------gtctctgccttgagga--tggctcactttagatgatcctctaaagagatatgaactttctctccattcagctggctgccaagaggaggtatgctcagaaggcccctggccttgcccttgtggcagtcacatgagctcctttattatctgagtagccacagacagacatagcattcaaggggccaagggtcaccaggggacaggtgggtaagcagtgattagtttatgagacaggggctgtgggcttggcacactcactatgccctgagaccaagccctgtggagacagggtgatggctacagaggggcacagaggggttttagaaacaagccttgctcacacagcatgtctgggcaatgccctg-ccccttctccctgaatggttgggggatggtaaccacctttcctaggggctgagaccctctagtgatgccaggccaagggaatgtggctatgctgactaagggtagcttgagttgagtggtgaagagaatcagattcatgcctgcagtggacagggggacagggcagtatgtatgactggacctgcctgagactagttggaaatcattctgtgcccctcctgggccctaatcttggagaatggggatgagaacaggaagaagtgatggaga---------------------ggacacttggccactacttaccacggaatggactttttccacag Myotis_lucifugus gtaagatgctcttctctgactcaccttcccagagacctttgccttagagggtggctccatgttagatggattctcacaaggtggtccacttcccctccagtaagctggctgccagaaggaggtgtgctcagaagg-cactggccttgcctctgtggcagtcacatgagctgccttattatctgagcagccatggacaaacctagcattcaaggggccaggggtcacca-gggacaggtgggtaag-------------------cagggactgtgggctt------------------------------------------agtgctggctacagaggggtccaggcgatgccctg-------------------------------------cccccccccttttccctgaaaagtgggg---tagtgacctcctttcctaagggctaggaccctcttgagatgcca--------------ggctgtgtgggctgagggt-gcctgagctgagtggtgaggtgaggcagattggtgcctgcagtggacaggg-ggcagggcagcatatatgactggacctgcctgagactagctcgga-------------cctcccaggctctactctcaggggacagggatgagaacacg---gagtgacgggga---------------------gggcacttggccactgcttaccaagtcctggacattttccatag Ailuropoda_melanoleuca gtaaggtgcttctctctgacacaccttcccagagacctctaccttggggggtggctccattgcagatgaactctcacagggtggtccactttctctccagtcagctggctgccaggagagg---ctctcaggaggccactggccttgcccctgtggcagtcgcatgaactccttcattagctgagcagccacggacagacctagcatccaaggggccaggggtcaccaggggacaggtgggtaagcgggagttactttaagacacaggggctgtgggcttggggcactca--------tgagactaagccctgtggacacagtgtgctggctacagagaagcacagagagatttcaggaacaagccttgttcacacagcaggtcggggggatgccccactaccttctccccaaatggtggggggatagcaacctcatttcctggggcctgggaccctctcgagatgcc------agggaatgtggctatgctagctgagggtggcctgagctgaatggtg--------cagattcatgttatta---------tgaacacagcagtatgtatgactgaacccgac---------------atcatcctgtgcccctcccgagtcctacgcttgggggacagggctgagaacaggaaagagtgacggggagggtgtcatgtgcccaccagagggcacttgtccactattcaccaagaaatggacatttcccacag Homo_sapiens gtaagatgcttctctctgacatagctttccagaagcccctgccctaggtggggactccattttagatggcaccacacagggttgtccactttctctccagtcagctggctgcaggaggagggggtgctcaagaggctgctggccgtgcccctatggcagtcacatgagctcctttatcagctgagcggccatgggcagacctagcattcaa-tggccaggagtcaccaggggacaggtggtaaagtgggggtcacttcatgagacaggagctgtgggtttggggcgctcactgtgccccgagaccaagtcctgttgagac--agtgctgactacagagaggcacagaggggtttcaggaacaacccttgcccacccagcaggtccaggtgaggccccacccccctctccctgaatgatggggtgagagtcacctccttcccta-aggctgggctcctctccaggtgcc-------------------------gctgagggtggcctgggcggggcagtgagaa-gggcaggttcgtgcctgccatg--------gacagggcagggtctatgactggacccagc---------------------ctgtgcccctcccaagccctactcctgggggctgggggcagcagcaaaaaggagtggtggagag-----ttcttgtaccactgtgggcacttggccactgctcaccgacgaac-gacattttccacag Macaca_mulatta gtaagacgcttttctctgacgtagctttgcaggagcccctgcgctaggtgggggctccattttagatggcacctcacaaggttgtccactttctctctcatcagctggctgcagggggagggggtgctcaagaggctgctggccgtgcccctgtggcagtcacatgagctcctttatcagctgagtggccatgggcagacctagcattcaa-gggccaggagtcaccaggggacaggtggtaaagtgggggtcacttcatgagacaggagctgcaggtttggggtgctcactgtgccctgagaccaagtcctgttgagac--agtgctgactacagagggacacagaggggtc----------------------cagcaggtccaggtgaggccccgcccccctctccctgaatgatggggtgagaatcacctccttcccta-aggctgggatcctctccaggtacc-------------------------gctgagggtggtctgggctcggcagtgagaa-gggctggctcgtgcctgtcatg--------gatagagcagggtgtatgactggacccagc---------------------ctgtgccccccccatgccctactcctgggggctggggacagcagcagaaaggagtggtggagag-----ttcctgtgccactgcaggcacttggccgctgctcaccgaggaac-aacgttttccacag Erinaceus_europaeus gtaagatgcttttctctgatataccttccaaatggcctcttccctgggaggtgg------------------tctatttagatacccactttctctccattccactggttgtcaaaaagcagggtgctcagaag------------gcccctgtagcagtcacgtggactcctttattagctgaacagtaatgagtagtccttgtatttaaaaggccagaagtcaccatggagcaggtgggcaagaccacattaattcatgtgaaaagggctgtgggctggtg---cattacctgtcctgagaccgagacctgtctggacaaggtgctggctatggagaggcacagaggagattcagaaacaagcctagctcacgattcatgccctggcaatgtcctgtcatcttctccctgaatagtggaggattactgacctcctttcctgaactttaggaccttctt-agatgtcaggagaaggaagtttgtttgtgctggcagagggaggttcaagtagcacagtaagaagagggagactcatgtttacagtgaacagggagactgggcaatatatatgaacagacctggctgagactagttgaa-accattctgtacccttcttgggtctcactcttgaagaacagaaatggaaaca-gaaggagtgatgggtagagtgtcttgtgctcattggtaggcagctgatcactgctcaccaatgaacaaacctttctcacag Neomys_fodiens gtaaggtgcttctcgctgacacaccttcccagaggcctctagtctggggga-gggtccaatttagatggtctctcacaagttgatccactttctctccagtcagctagctactggaggagg-ggtgctcag---gccactggccttgcccct------gtcatgtgagttactttattagctgagcagccgtggacagacctagaattcaaggagccaggggtcacctgggcactggt-ggtagtcagtgatttgttcatgagacaggggctgtggacatgag---------------------catttattgttga---aagacagtggctatagaggggcacagtcagattcaaggaatgatcattgctcacatagc----ccgggca---------caccttttccctaaa--------------tgacctctgtttctggggtttgggaccttcttaaaataccagggcaaaggaata----tgtgctatctgagggagacttgatctgagcagtgagcagattcagactcatgtccaaagtgaatagggaaacaggatagtatgcatgagtggttcccactgagtcaagttgaaaattaccctcactccccaccaggtcctactcctagagaacaggaatatgaataagaaagagtgatggtgag-gtgtcctgtgtccct----gggcatttgatcaatgctcacagaaaaactatcatttcttacag Sorex_coronatus gtaagatgattctctccgacacaccttcccagcgtcctctgctctggggga-gggtccattttagatgg-ctctcacaggatgatccactttctcttcagtcacctggttaccagaggggg-tttgctca----------gaccttgcccct------gtcatgtgagc--ctttattagctgagcagccatggatagacttagtattcaa-gagccagtggtcatctgggcactggtgggtatgcagtgatttgttcgtgagacaggcgctatgggcatggg---------------------catgtattgctga---aggatggtggctagagaggggcacagagggattcaaggatagatagttgctcacattgc----ctgggc-----------------------------------------accttctttcctgggggttgggacttactgaaaatgccaggtcaaaagaatgtggctgggctagctgagggagacttgatctgagcagtgaagaggatcagactcatgcccctagtgaacagggaaataggacagtatgcacgagcggtccccactcaatcaagtagaaagtactccctgcctcccactaggtcctatgcctagaaaacaggaataggaataaaaaggagtgatgatgtg-gtgtcctgtatccct----gggctcttggccaatgctca--gagaaattctcatttcttccag Crocidura_russula -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; END; BEGIN CHARACTERS; TITLE CST6_intron_1; LINK TAXA = Taxa; DIMENSIONS NCHAR=454; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Bos_taurus gtgcggccgacggggggaggggaggcgagcgcggcccca-gccgggcccagatggagggggcgact-agagtaatcagggcatcttaatacaacattttcaaaatccaattaatgtcaaaagtccatgcggagcagaatctcagaatttcaataaggttcaaccctgggcctgg-----------------------------tcctgaggcggattggggtgcgaggtgagggagaaggggcagc----------gtgtggacttggtctcaggctcctgcctggcccaggctctgcccgcctcaccacaggacccccaccagaactccccatctcaggtttgaatccaaagg-cggtgtgctggctatgcccagggggggtgatgggggggaggtgagaggcccaggcagatggtggctgagatggcccagctttgccccctctccaccgcc Canis_familiaris gtgtgaggggtggggtggtgcaagaccagtgcggcattc-gcaggtgccaggttaaagggatgccacagagtattcaggacactttaatacaatgtttttttagttcaattaatgccacaaattt---atgaacaacacatcgatatttcaataggatctagccctgtacacagc-ggctcgctagcctcaaggt-gctcctgctctggggtggattggggagacgagtgagggagatagggcagtgggcttcaggctgcacccctggtctcagcttcctgcgtggcccaggcctctgcttgtcttcccaggaatccccaccagaactccccatccagggtctgaatcccgaggccagtgtgctgaatgtg-------------------gagaggtgagaggtccgggtcaagggca-ccagaatccctgacctgctcctgtcctccatcccc Felis_catus gtgtgggcgggtcaggggcgccaggccagcagggctttcagccggtgccaggtcgagggggtgccacagagtaatagggacattttcatacgatggtttttaaatcggattaatgccaagaattcattatgaacgacctatccagctttcgacgggatccagccct----------gtctcactagcctcacggtagcccccgccctggggcggactggggagaggagtgagggagatggggcggtgggcttcagggtgcacacctggtctcagcttcctgtgtggcccgggcctccgcccctctccccaggggtcgccaccagaactccccatccagggtctgaatcccgaggccagcatgccgaatgtg-------------------gagaggggagaggtctgggtctggggtagccggtgcccctcacccgctcctgctctccctcccc Tursiops_truncatus gtgcggccggcggggcggggggaggcgagcgcgacccca-gccgggcgcagatggagggggcgacacagagtaatcagggcattttatacacatatttttcaaatccaattaatgccaaaacttc-ttgcggacagaatatctaaatttcaataagatccaaccctgtgcatggctacctcactagcctcacactagtccctgccggggggcgagttggggaggggggagagggagatgtggcagt----------gtgtggacttggtctcagcctcctgcgtggcccagtctct-gcccctctccccagggctccccaccagaactcctcctcccagacctgaatcccaaaggcagtgtgccggatatgtcctaggggggagatgggagggaggtgagaggtccaggtcaaaggttgccggcacccctgacctgc-ccccacctctgcctca Equus_caballus ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pteropus_vampyrus gtgcggctggcgg-------cagggagaggagaagagccctcagcgcccagattaagggggagccacaaagcaagcaggatattttaacaatatattttaaaaactgaattaatg-------------atgaacaaaatatctaaattttgacaggatgcacctctgtgcatagctacctcaccagtctcacatgggccctggcct----gcgggttgctggggagagtgagggggat-gagcggtgggcttcagggtgagcccttggtcttagcccccttcgtggcccagacctctgcctcccatcccagggatccccaaaagaatgttctgtcccaggtctgagtcccaaggccagtgtgctggacgtgtctagggggggagatgggagagaggtgactggtgagggtcaggggtagccggcacc-ctgacctgcccctgccctctgtccca Myotis_lucifugus gtgcggctggcgg-------cagagcgaggggggcgcgcagccgggcccagatgaaggcagagtcacagagtaatcaggagagtccaccaatatattttaaaaattgaattaatgccaaaatttcacaatgaaccaaatatctaaatttcaatagaatctacccctgtgctcagctacctcaccagcttcacaccagtccctttgctgcagctaattgggaagggaggtgggggagacgaggcagtgggcttcagggggtgcgcttg----cagcctcctgcctggccggggcctcggcctctcccccgggga----------------cctgccccaggtctgaatccccaggccagtgtgctg---gtggccagggggggagatggga-ggcggtgaga----gaggcgggagggcgccagcacccctgacctgc-cctgccctccgtccca Ailuropoda_melanoleuca ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Homo_sapiens gtgcggcgggcggggtgctgccagatgggggaggccacaggcgctgcgtgcatgaagggggcctaa-agcgcaatcgggatattttcatgcaatattttaaaaatcgaattaatgctaaaactccacgatggac-aaccatctaaatttcgacataattaaaccctgtacctgccttcctggcttgcctggtcctagtctctgccctggggtggatcggggaggagggaaggcaggtggggacagtgggcccctaggggcatgtctggccaaggctgctggtggggctcagcctccaggcctctccaccctccatccccaccagaactccccccaccccgtctgaatcatcccccctgagtgcct--------------gggcaacaggaaagaggtgagaagtgaggatcaaggg---tcaagacccctgacctgcccctaccctatgccccc Macaca_mulatta gtgcggcgggcggggtgctgccaggcgggggaggccacaggcgctgcttgcatggagggggcccga-agcgctaccaggatattctcatgcaatatttaaaaaatcgaattaatgccaaaactccacaatgggc-agccatctaaatttcgacatcattcaatcctgtacctgccttcctggcttgcctggtcctagtctctgccctggggtggatcggggagaagggaaggcagatggggacagtgggcccccaggggcatgtctggcccaggctgctggtggggctcagcctccaggcctctcctccctccacacccaccagaactccggaccccaggtctgaatcattcctcctgagtgcct--------------gggcaacaggagggaggtgagaagtgaggatcaaggg---tcaagacccccgacctgcccctaccctatgtcccc Erinaceus_europaeus ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Neomys_fodiens gtgag---------------cggggggacggcggacccg---ggagcccaagtgatggggagcacacgatgg-------------------------------tccagaacgctgcggggatccg-------------------------gac-------------------------------------------------------gggcgccctgcggggcgggctgcaggggagtggggtgggggcttcacg-----------ccgcagcgctcccacaggccctcggtttt----------------------------------------------------------ccaggggtcccccgcacccttgggggagagttgggagagagac---------------aagggcgctggcgcctctcact----cctgcacccgcccaca Sorex_coronatus ---------------------------gtgagggctcag---ggagccccagtgatggggaccgttccgcggggac-------------------attgcaaacgtggatctttgccggagcccc-------------------------gac-------------------------------------------------------gagcgccctggagtg----------------gggctgtgggcttcatg-----------gctctggtctcc------ccctggggtcc----------------------------------------------------------ccagcaccctgcaggtatctgggcggagggttgggacagagacgag-gggcctgctcaaggggggttggcacccctcacc----cgcccgcctctccccc Crocidura_russula ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; END; BEGIN CHARACTERS; TITLE GALNT5_intron_4; LINK TAXA = Taxa; DIMENSIONS NCHAR=577; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Bos_taurus gtaatattgtcatattccacaggatacttctaagtgacttttta---accagtagcagaaggtagtggtcatactcctaaaatgtacaactttgcaaatctaagtaatacatggtttatctgtttaaataaattgaaataattgat--atatcatgagatcaaagcagatctatccaattgtttatttgatcatcacaaattcttaaccctaaatgtcaataaatactaatactcagtgtccaggactctcctctttctatacagctgaacaccaaatatttatttttcttaagattagttcttctttttatacacatgtatattcttaagtagtcttttccccctcaaaatggccagaatattattaaaagaaaagtat--gttaaaagcaagcaatccag---------cactaatgctaattatatccatatctctcattgaaatgttattaaagctttgtggtgatctaaaatcatcttcgcaagttgtttcgtccacgtgcacaacacgtggtgtcaggctgat------tgaatgacctcaggtagcatttttttcccttgacta-----g Canis_familiaris gtaatactgtcatattccacaagatacttataagtgagtctt----taacagcattagaaaatactggtcatattcct-atatgcagatttttgcaaatctaagaaatccacagtttatccatttaaataaatgaaaacatataatagatatcttgggatcagag---gtcaatcaaatagtttatttgatcatca-aaattcttaactcttaataccaataaatcgtaacactcattatccagttctttcctctttctattcagctgtgcctaaaatatttatcttccttaagattagctcatctttttaaatatacatatggtcctaaattgtttttttccctcaaaaactgtcagaacattattaaaagaaaagtataagttaaaaactagcaatccagccaattagtcactaatgcaagttgtactcataaagttgcttgaaatgtcattaaaagtttgtgataatctacaaacatttgtataaattatgtcatttatttgaacaagacatgatatcgggttgattaagtatgaatgatctcaggtagcacttttgtttttgtcctggattag Felis_catus ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tursiops_truncatus gtaatattgtcatattccacaagatactt--aagtgagtttt----aaccagcagcagaaagtactggtcatactcctaatatgtacatttttgcaaatctaagtaatacacaatttatctgtttaaataaatggaaatacatgatagatatcttgagatgaaagctgatcaatccaa----ttatttgatcatcacaaattcttaacccttaatgctaataaatactaatactcatcgtccaggtctttcctctttctattcagctgaaccccaaatatttattttccttaagattagtttttctttttatacacatatatattcttaagtggttttttttcctcaaaaatggccagaacattattaaaagagaagtgtaagttaaaagtgagcaatccagccagttagtcactgatgcaaattatactcatacattgtattgaaacgttgttaaaagtttgtgatgatctaaaatcatctgcgtaggttgtttcattcacttgcacaagacatgatgtcgggttggttaagtgtgtatgatctcaggtagcactttggtttttttcctggactag Equus_caballus gtaatattgtcatactccataagatacttct----gagtctttaaccagcagcaacggaaaatactggtcatattattaacatgtggg---gtgcaaatctaagaaatacatactttatctatttaaataaatagaaatatgtgatagatatcttgggacaagagaaggtcaatccaataatttatttgatcatcaatcatcatcaatccttaagaccagtaaatcctaacactcattgtccagttctttcctctttctgttcagctgaactcaagatatttattttccttcatattagttcttctttttaaatatgtgtatgctcctaaattgttttttcccctgaaaagtgaccaaaacgt--------------tataagttaaaagtaagcaatccagccatttagtcactaatgaaaattgtacttataagttttcttgaaatattattaaaagtttatgatgatctaaaatcatatgcataagttctttcattcatttgaacacaacatggcgtcgggttgattaagtagatatgatctcaggtagcacttttgtttatttcctggatcag Pteropus_vampyrus ---gtaatatcatattccacaagatacttctaagtgagtctttaggcagcagtagcagaaagtactggtcatactcctaatatgtacatttttgcaaacctaagaaatacacagtttatccatttaaataaatggaaatatatgatagaaatcttgagatcagagcaggtcgatctat----ttatttgatcatcacaaattcttaacccttaataccaataaatcctaaaattcattatgcggttttttcctctttctattcaactgaaaccaaaatatttatttttcttaagattagttgttctttttaaata--tatatgcttataagttgtgttttttttctcaaaatggccagaatattttttaaataaaagtataagtt-aaaataagcaataaggccaattagccactaatgcaaattgtactcataaattttcttgaagtgttattaaaagtttatgatgatataaaatcatgtgcataagttgttttatttatttgaacaagacatagcatcgggtcaattaagaacgtatgatctcaggtaacgcttttgtttttttcctggattag Myotis_lucifugus gtaatattgtcatcttccacaagatgcttctaagtgagtctttaaccagcagcaacagaaagtactgattacactcgtcatgggtgcatttttgcaaatctaagaaa--tacagtttatccatttaaataaatggaaatacataatacctatcttgggatcagagcaggcgaatctgt----ttatttgatcatcacaaattcttaacccttgatac-----------------cattgtccagttctttcttctttgtattcaactgaacc-aaaatacctattttccttaaaattagttcttatttttatatatatatatatat---aattttccacccccctcaaaaatggccagaatattatttaaatataagttaaaaataaaaataaacaattcagccaactggtcactaatgcaaattgtacttataaattttctagaaatgttattcaaagtttataataatctaaagtcatctgcataagttgttttattca-ttaaacaagacatggcattgggtcagttaagtatgtatgatctcaggtagcacttttggtttttccctg------ Ailuropoda_melanoleuca gtaatactgtcaccccccacgagatacttctaagtgagtctt----caacaacagcaaaaagtactggtcatattcctaaagtgcacatttttgcaaatctaagaaatacacagttcatccatttaaataaatagaaacacataatagatatcttaggatcagaa---gtcaatccagtagtttatctgatcatca-aaatgcttaacttttaataacattaaatcctaatactcattgtccagttctttcctctttctattcagctgtacctaaaatatttatcttccttaagattagttcatctttttaaatatacatatgctcctaaattgtttttttccctcaaaaat----agaacattattaaaagtaaagtataagttaaaaactagcaatccagcccgtaagtcactaatgtaagttgtactcataaatttgcttgaaatgttattaaaagtttgtggtaatctaaaatcatttgtgtaagttgtttcattcatttgaacaagacatggtgtcagattgattaagtatgtatgatctcaggtagctcttttgtttttttcctg------ Homo_sapiens gtaatatttacacattccacaagatactttcaagcacatctttaatcacaagcagcagaaagtgctgagtatatgcctaatatgtgtgttttttcaaatccaagacatatacagtttatctacttaaataaatggaaaaacatggtcgatatcttgggatcagagtctgctgatgcaataatctatctggtcactacaaattcttaactctaaataccaataaatcctaatactcatgacct-agtttttcccctttatatttagctgaaccccaaatatttatttacctcaaatttagttcttatttctaagcgtatatgtgcttttaagttgttttttttcttcaaaactggctagcatattgttattataaaagtataagttaagcacaaat----aagccaatcagttactaatgcaaattgtacttgtaaacattcttgaactattattaaag----gtggtgatctaaactcat---caaaagttgtttcattcatttgattacatcgtgaagccaaatcgataaagtatatataatcccagataacactttgtttttcttcctggattag Macaca_mulatta gtaatattgacacattccacaagatacttctaagcacatatgtaaacacaagcagcagaaagtgctgagtatatgcccaatatgtgcattttttgaaatccaaaacatatacagct----tacttaaataaatggaaaagcatggtcgatatcttgggatcagagtctgctgatgcaataatctatctggtaactacaaattcgtaactctaaataccaataaatcctaatagttattatct-gttttttcccctttatatttagctgaaccccaaatatttatttgcctcaagtttagttcttatttctaaacacgtatgtgcttctaagttgttttttttcttcaaaactggccagaacagtattaaaataaaagtataagttaagcacaaataatcaagccaattagttactaaagcaaattgtacttgtaaatgttcttgaactattattaaag----gtggtgccctaaaatcat---cataagttgtttcattcatttgactacgttgtgaaaccaaattgataaagtatatataatcccagataacactttggtttttttcctggattag Erinaceus_europaeus ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Neomys_fodiens gtaata-tgtcaggctccataagatacttctaaatgagtctttaaacaacaggtgaaaaaagtagcagtaatactcctaatacatacatttttgaaaatctaaatactgcttaaccatttaattt---taaatgaaaatatgtgatagStatcttggaaatagaacaggtttgcacagta-----------------------tttgtcctcactatcaatgaattctagtatgcattgttcagtttgttcctctttacatttagattaatcctaaatattcatttgccttgggatcaatccctggcatcttatataaacatgtta------tatattttatccacaaaagtggccaggccaccatt------aaaatatgagtttaaagcaagcaagccagactatcagtcactattgaaaattgtacttaatatttttcttgaaagttactctgaaagttgcaatgatttaaaatgatatgcataaacagtttcattcaattgaacaaaa-atggctataagcgggtgaagcatgcataatctcaggRgacacttttctcctc----tatattag Sorex_coronatus gtaata-tgtcctattccataagatatttctaagtgaatatttaagtagcagaagcaaagagtagtggagatctaccatatgtgtacatttttgcaaatcaaatgaata---atttttttcatttaaataaatgaaagtatgtgatagctatcttggaattagaactgatctgcacag-----tattttatcaccacagaa--tttgtcttcaatactaatgaattcaaatatgcattgttcagttttttccactttacatttggctaaacctaaaatacctatttcccttatgtttagtttgctcttt-gcataaatatatgttat-----tacattttattcacaaaagtggata-------cttaagagaaagatataagtttaaagcaagcactccagactgccaattagtattgaaaactggacttaatattttccttgaacattacttttacaattgtgatgatttaaaatcatctatataaaccttttcattcaattgaacaagaaattactttgagttggtaaagcatgtataatctcaagagacactttttttctt-tcctacattag Crocidura_russula gtaata-tgt----ctcaataacatacttctaagtgactctttaaacatcaggagcaaaaattagtggtaattctcctaatatacacattt----------------taattaataaatatatttaaataaataaaaatatgtgctagctatattggaatcagaacaggcctgcacaa-----tattttaccaccactgca--cttttcattaatatcaataaattctaataagctttacttagttttctaccctttattttaagctaaatgcaaaacatttattttacttaagtttagttctcccctcttcatacatatacattat-----tgtgttttattctcaaaagtggtcagagcaatagtaagagaaaattataagttaaaataa---acatcgaatagtcagtcactctagcaaattgtacataataattttcttgaatgttattttcaaagttgttatgatctaaaatcatatgcatacactgtttgattcaattaaacaagacatggctttgagttggtgaagcatttataatatcagaatacacttttttcttc---ctacattag ; END; BEGIN CHARACTERS; TITLE GDAP1_intron_1; LINK TAXA = Taxa; DIMENSIONS NCHAR=689; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Bos_taurus gtaaaggccttggccg-ggcgggcggcgcagatcgggtttcagcacctggacagctcccgctgggtgccgcccggggaagcccgcccaccgaga------cctccaactcaacccctgcgggcggcgccctgtggggcaggggtgcgctttgaggagcagggaaaatcagtctgagatgaaggccgtgactcaggcaccgccactcatgaaatgcgacagaaaa-catcactttcggcgttggggcgggaggcctcgtctccggggccttggagagtgaggcagagggaagcgccttccggcaacccccatccagggttccttcttttactcttggttgattgacttt-------tcaac-aggcctagtgtatc--tgtttcaggttcttactatgg--ggacgcatcataaggtttaggacacaaagaaagtagtagtgatgaagagggtgaccgtggactgaatattgccagaatcattctcattacgtatc----ttttctaacttacaagattgaggtgcgagaatatgtctcacttgttaattccaggaatag----agttgaaaggggtgttgaaaatgttaataactcagggaagcacaaaaaggctgctggctggtatccagggatgtcatttaattaaaagcctacctgcgttgtggtaaccaatgtgaactcttccag Canis_familiaris gtaaaggcctctgccggggcgggcggcgccgatcaggtttcagcaccgggacagctccccgggg---ccctccgggcactcgg---cctccagaaccgggcctc-----------cccgggcgcatcccttcgagcgc--------------------------acttagtctgagatgaaggctatgactcaggctctgccgcggatgaaatgcgacagaaaagcatcactttaggtgtttgggcggaaggccttgtcccctgggccttggagagcgaggcagaggaaagcgccttcctgcaaccatcatct---------tcttttac---cctttgtacgcatttgctctcctccacaaggcctagcacatctagatatcagattcttttctggggaggacacataattaggtttaggacgcaaagaaagtactgatgatg-ggagagtcactgtggaataaatacagccagaattattttcgttcctcattttgttgtcctaatttatatgattaagatgctagaatatatctcacttgttaattccgaggacaggaatagttaaagaggttgttg---ataataataacttagggaaacacagaaaggctacttaatggtatccaggggtgtcagtt-----aaagcctgcatgtgttgtagtaaccagtgtgaactctttcag Felis_catus ttacaggcctctgccggggcgggcggcgcggctcgggtttcagcaccgggacagctccctcagggc-tctctcgggtactccggcgcatctgcaagtaggcctctaaagccctaacccgggcagggctccctgagggcagggatgcgcgctagggagcacggatgatcagtctgggatgaagggtatgactcaggctttgccactcatgagatgcgacaaaaaaacatcactttaggtattcgggcaggaggccctgccccctgggcttaggggagtgaggcagagggaagttccttcatgcaaccataatttacagttccttcttttactctttctggtacgcattcgctctcgtcaacaaggcctagcacatctatatatcagattcttgtctggggaggacacataattaggtttaggacgcaaagatagtagtggtgatg--gagagtcactgtggaataaatatagccagaattattttaattccttattttattatcctaatttatatgagtaaga-gctagaatatatctcacttgttaattcctagactaggaatagttaaaaagaatgtggagaatattaataacgtagggaagcacagaaagtctgcttaatggtatcca-ggatgtcatttaattcaaagcccacatgtgttgtagtaaccagtgtgaactctttcag Tursiops_truncatus gtaaaggcctccgccg-ggcgggcggtgcggatcgggtttcagcaccgggacagctccctctgggtgttgcccgggtaggccggcccacttagaaacaggcctccgacgccctaaccccggcgggctccctgaggggcgggggtgcgccttggggagcagggagcatcagtctgaggtg------------aatgcactaccagtcgtgaaatgcaacaaaaaagcatcgctttcggtatttgggcgggaggccttgtctccggggccgtggagagcgaggcagagggaagcgccttcctgcaaccatcgtctagggttccttctttta----ctcttggtcgcattcactctcttcaac-aggcctagcctatc--tgtttcaggtccttatacgggaaggacacatcgtaaggtttaggacaccgagaaagtagtagtgatgaagagggtgactgtggactgaatatagccagaatccttttcattacttaattagcttttctcacttacaagcggaagacgctagaatatatctcacttgttaattccaggaacaggaatagttgaaaagaatcttgaaaatattaataactcagggaagcacaaaagaactgcttgatggtatccagggatgtcatttaattaaaagcctccacgcgttgtggtaaccagtgtgaactcttccag Equus_caballus gtacaggcctcggctggggcgggcctcgcggatcgggtttcagcaccaggacagctccctctgggtctcgccc-ggtccgcgggcccaccgagaaatgggcctcccacgccctaa-cccggcgggcgccctggagggcagggatgctccttggggagcagagagaatcagtctgagacg-----------aaaggcactgccactcgtgaaatgcgacaaaaaagcatcactttcggtttttggactgcaggccttgccgcctgggccttggagactgaggcagagggaagcgccttcctgtaaatataacatacagttccttcttttactctttcttgttcgtatttactctcttcaacgaggcctaacatacctatattttagattcttgttgggggaggacacataattaggcttaggacccaaagaaagtagtggtgatgacaaaggtgactgtgaaatgaatatagccagaatcattcttatttt-------atttttctaatctataagagtaagactctagaatatatctcacttattaattccaggaaaaggaatagttaaaaagaatgttgaaaatattagtaactcaggaaagcacggaaaagctgctcagtggtgttcagggacgtcatttaattgatggtctggatgtgttgtggtaaccagtgtgaactcttccag Pteropus_vampyrus gtaaaggcctcg--cggggcgggcggcgcggatcgggtttcagcaccgggacagctccctctgcgccccgcccg-----gccggcccacctagggacaggcctcccacgccctaacccctgctacctctctcggggatacggatgcaccttggggagcagagggaatcggtcagagatgaaggctatgacccaggcactggcactcacgaaatgcgacaaaaaggcatcactgtaggt---------gggggccttgtcccctgggccttgcagggtgaggcagaaggaagcgccatcaagcaacgataacctacagttccctcttctactcattcttgttcccgtccactctcttccagaaggcctagc--atctgtatttccgggtcttgtggtggggggacatgtgattaggtttagggtgccaagcaagcagtggagacggagagggtgactgt-aaatgaatacggctagaatcattttccttacttatt----ttttctaatttataaggacgagaccctagactatctctgacatgttaatt-tgagaacaggagtagtcacaaagaatgttgaaagtattaataactcaggggagcacagaaaagctgcttggtggtatctggggatgtcgtttcaccgaaagcctgcatgcgctgtggtaa-cggtgtgaactcttccag Myotis_lucifugus gtaaaggcctcggccggggagggcggagaggatcgggtttcagcaccaggacagctccctcggggcctggcccg----cgctggcccacctggaaacaggcctccagggccctgaccccaccaaactccctccagggcagggatgcgccttggggggcagggagcatcagcctgaggtgaagcctatgcccgaggcgctgccactcacggaataagac-caaaagcatcactttcggtgtttgggctggaggccttgtcccctgggcctcgcagagtaaggcagagggaagcgctttcaaacagccaacaccga----------tcttactccattttgttcccatccattctctttcaaaaggtctagcatatttgtatttcagtttcttctttggggagaata--taattaggttc-gggcacaaagaaagtattggtgatggggagggtgact---gaattattgtagccagagtcagtgtcattaccgatc----ttttctaattcataggaacaagacgttagattgtatctgacttgttaattctagaacaggaaacagtgacaaaggatgttgaaaacattcataactcagggaagcacagaaaagctgcctagtggtatccagggatgccatttaattgaaagcccccatgctctgtggtaaccggtgtgacctcttccag Ailuropoda_melanoleuca gtaaaggcctctgctggggcgggaggcgaggatcgggtttcagcaccgggacagctccctgagggt-tctccccggtactcccgcgcatctagaatcaggcctccaaaaccctaatccgggtgggcaccctggagggcagggatgcgcc-tggggagcacagataattagtctgagatgaaggctatgactcaggctttgctactcatgaaatgcgacaaaaaagcatcactttaggtatttgggccagaggccttgtcccctgggccttggagggtgaggcagagggaagcgctttcatgcaaccgtaatctacagttccttcttt------ttcttgtacacattcgctctcttcaacagggcctagcacatctatatatcagattcttgtctggggagggcacataattaggcttaggacagaaagaaagtagtggtgatg--gagagtcactgtggaataaatttagccagaattattttcattccgtattttatctttctaatttatatgattaagacgctagaatata--tcacttgttaattcctggaataggaatagttaaaaagaatgttg---ataataataacttagggaagcacggaaaggctgcttaatggtat-cagggatgacatttaattgaaagcctacatgtgttgtagtaaccagtgtgaactctttcag Homo_sapiens caacaggccttggcggcggagggtggcgcggatcgggcttcagcactgggacagctccttctgagtcccgcccagggaagccggtccacctagaaatccgcctccagtgtcctgaccccgggcagctccctcca-ggcggggacgcgcccgggggagcggggagaatcgatcggagatggtggctatggcccaggctccgcctctcgcgaaatgcgacaaaaaagcatcattttcagtatttggtctggaggccttgcctgctggtcttcggaga--gaggcagagggaggtgcctttgtggacccataatctgcgatctcttcttt------tgctctctcgcattcactgtcttcagcaagagctgatgtacctacatgtcaggttcttgtctggggaggacccataatcaggtttaggacaccgagaaagtggtagtgatgaggagggtgactgtttaatgaatacagtcagaatcatt-tcattacttattttgtttctcttaatttgttgagtattgttct------ttccttacttgttaattccaggaataggaattgttaaaacgactgttgaaaatgtcggtaacacagggaagcccagaaaggctgcttagcggtgtccagggaagtcatttaattgaaagcttacatgtgttgtagtaaccagtgtgaactcttccag Macaca_mulatta gtacaggccttggcggcggagggtgacgcggatcgggcttcagcactgggacagctcctgctgggtccggctcagagaatccgttccacctagaaacccgcctccagcgtcctgaccctgggcagctccctcca------ggatgccccccggggagcgggtagaaccggtctgagatagtggctatgacccaggctctgcctctcgcgaaatgcgacaaaaaagcatcattttcagtatttagcctggaggccttgcctgctgggcttcggaga--gaggcagagggaggtgccttcgtgcacccatcatctgcgatctcttc---------tgctctctcgcattcactttcttcagcaagagctgatgtacgtacatgtcaggttcttttctggggagggcgcataatcaggtttaggacgccaagaaagtggtggtgatgaggagggtgactgtttaatgaatacagtaagaatcatt-tcattacttattttgtttctcttaatttgttgaatattgttct----------gtacttgttaattccaggaataggaattgttaaaacgactgttgaaaatgtcagtaacacaggggagcccagaaaggctgcttagcggtgtccagggaagtcatttaattgaaagcttacacgtgttgtagtaaccagtgtgaactcttccag Erinaceus_europaeus gtaaaggccttagtcctggcaggcggcaaggatcgggtttcagcacccggacagctccttctgggtcgggctag---------gcgggaccagaaacctgtctc???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????tc---------------------------------------tccagcaggtggggagctgggggctcaaaccaggatcc---------------------------ttcgtatatatgcgctcaacctggtgcgccaccgcccggttccctatttcaggttcttatctggggaggataca--attaggtttaggatacaaaaaaaaatgtgatgatggagagggtgagttcagtctcaacacagccagaataattttctgtacttattttatttttcaatgtcatgaggataagatgctagaatatatctaacttattgattccaagtataaaaatagcaaaaaagaatgttgaaaatatcagtaactcagggaaaaacagaaaaaatgctttgt-gtatccaaggatgccttttaattggaag--------ctttgtagtaaccagtgtgaactcttccag Neomys_fodiens gtgacggc--ctggcggcgcgcgcggcgcggatcgggtttcagcaccaggacagctcccagggtccggggctgg----cgccgccacctcttg---caggcctc---------aaggcaatctcgtccttccagggac---gctgcaccttctggagcttagagga-agatctgagctcatggctgtgaccctggtcttgccactcatagaaggcgacagcgaaacatcacttttgccagacggggtggaggccttgtcccctgggccgaggagagagatgcagagagaaacgccatt-----------atccacagttacctcctttagcatttcttgtttaccttcattttttttaataaggccaagc-tttgtgtatttcggggttttatctggggatgaca--agattaggtttagcctcccgcccccctagtggtgatggggaaggtggctgcaaaatgaatgttactagaatcatttccgtaacatatttatttttttgacttcgtaagtgtgagactccagactataccccacttgttagttttaggaatagaaaaagttgaaaagattatgggaaatgtaagtgttttggggaatcccataaaggctgctgatt-atgtcc-gggatgacatgtaactgaatgcccacctgtgttgtagtaaccaccgcggactcttccag Sorex_coronatus ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Crocidura_russula ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; END; BEGIN CHARACTERS; TITLE HIF1AN_intron_5; LINK TAXA = Taxa; DIMENSIONS NCHAR=412; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Bos_taurus gaggacggggcta-gactgggggcttctggggagctttctttcccattccctggaaagccttatccatgtcacttctgagttgtggcaggattggacttatgtgatgtacaggaaggttggcatatccggatgtgagcgtacttaacccgggggaaatgataacattgtttcta-gacaagataacagttcctctggtccaaagaggccccagaggcttgagg--------------cttggctctttggtatttgaagaccaaacacactccctttagctccgggtgtgtttaataggatgagtgtgaagatactgttttccttatataggacagctatatacttcctagtttggaaccatccctctgaaaagtactggtggcaaacagcaacctgtttgttttcttgcag Canis_familiaris gaggaggggattaggactgggggcttcttgagagctttctttcccattcccagaaaagctgtatctgtgtcccttctgagttgtggcaggattagttttctgtgatctacaggaaggttggcatatccagatttgagcatactgaacatggggaaaataacaacctaatctctcagacaagatgacagttcctcaggtccaaagagatcccagaggcttgaggctggagaaactattcttggctcttttgtatttggaaactgaacacactgcctctgattccgggtctgtttggcaggatgaatataaagataatgtccttataatttgtttcagctggacttttcctagtttccatctctccttctaaagaatattggtggcaaacaggagcatgtttattttcttacag Felis_catus ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tursiops_truncatus gaggatggggctaggactgggggcttttagggagcgttctttgccattccctggaaagccttatccatgtctcttctgagttgtggcaggattggacttacgtgatatacaggaaggttggcatatccagatgtgagcatactgaacatgggggaaatggcaatactgtttcta-gacaagatgacagttcctcaagtccaaagagatcccagaggcttgaggctagagaaactgttcttgactcttgggtatttgaagggtgaacacactgcctctagcctcgggtgtgtttgataggatgagtgtgaagatactgtcttcattatatcccttagcaggactctacgtagtttggatccctccttctgagaagtattggtggcaaacaggagcctgtttattttcttgcag Equus_caballus -gaggaggggctaagactacgggcttcttgggacttttctttccca-tccccggaaagccttttctgtgtcccttctgagttgtggcagcgttggttttacatgagctacgggagggttggcatatccaaatgtgagcctactgaacatgagggaagtg-caaccctgtctctaggacaagatgagaattgctcaagtccaaagatgtcccagagactggaggctggagaaagtgttcttggctctttggtacttggagactgaaca--ctgcctcagccccagggtgtgtttgacgagatgagtgtaaagatactgtcgtcattaattcccttagctggactctgcccagtttccatccctccctctgaaaagtattggtggccaacaggagcctgtttattttcttgcag Pteropus_vampyrus gaggaggtggctgggactgggg--ttcttgggagcttacttttccagtccctggaaagccttatttgtgtcccttctgagttgtggcaggattggccttatgttatctacaggaaggttggcatatccagatgtgagcatactgaacatgggggaaatgatagccctgtc-------------------tcctcaggtccaaactggtcccagaggttctaggctggagaaactgttcttggttctttggtatttagagatcaaatacattgcctcaagcctcgggtgtgtttgcctgaatga--gcaaagatactgtcttcattgtttcccttagctgaac----tctaattatcattcttttctctgaagagtattggtggcaaacagtagcctatttattttcttgcag Myotis_lucifugus gaggagggggctaggactgaggacttcttgggagctttcttttccattttctgaaaagccttatctgtgtccct--tgagttgtgacaggattggtctaatgtgatctacaggaaggttggcatatccagatgtgagcatcctgaacatgggggaaatcacaaccctctctcta--------------------------------------------------------------------------------------------------------gcccctggtgtgtgt---gagaggagcatgaagatcctgtcctctttatttctcttagctggac----cctagtttccgtccctccctctgaaaagtattggtggcaaacaggaacctgtttattttcttgcag Ailuropoda_melanoleuca gaggaggggactaggactgggggcttcttgggagctttctttcccattccccggaaagctgtatctatgtcccttctgcgttgtggcaaaattggtcttatctgatctacagaaaggttggcgtatccagatgtgagcgtactgaacatgggggaaatgacaacccagtctctaggacaagatgacaattcctcaggtccaaagggatcgcagagggttgaggctggagaaaatgttcttggttctttt-tatttggagactgaacacactgcctctggtcccgggtgtgtttgacaggatgagtgtaaagataatgtccttgttatttgctttagccggactttacctagtttccctccctccctctaaagaatattggtggcaaacaggagcatgtttattttcttgcag Homo_sapiens gagaagggggctagggctgggggctttttgggagctttcttttccattccctggaaagccttgtctgtgtcgcttctgagttatggcatgattggttttatgtggtctataggaaggttggcatatccagacatgagcgtactgaacgtggcgggaatgatagccctgtctctaggacaggatgacggttcttcaagtccaaagagattccggaggcttgagcctagaaaaactgttcttggctctttggtatttcgagactgaacacagtacctctaaccccaagtgtgtttcacaggatgagtgtaaagatattgtcttcactattttccgtaactggactccacctagtttccctccgcccccgccaaaagtatcagtagtaaacaggagcctgtttgttttcttgcag Macaca_mulatta gagaagggggctagggctgggggcttcttgggagctttcttttccattccctggaaagccttgtctgtgtcccttctgagttatggcatgattggttttatgtggtccataggaaggttggcatatccagatgtgagcgtactgaacgtggggggagtgatagccctatctctaggacaggatgagaattcttcaagtccaaaaaggttccagaggcttgagcctagataaattgttcttggctctttggtatttagagactgaacacagtacctctaacccccagtgtgtttcacaagatgagtgtaaagatattatcttcactgttttccttaactgcactctacctagtttcctcaccccccaccgaaaagtatcagtagtaaacagaagcctgtttgttttcttgcag Erinaceus_europaeus ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Neomys_fodiens ggaggtgggactaggacttgggactc---------------------cccctgcaaagtcttatctctgtcccccttgagctctg--------------gcatagtctacaggtagggcctcatacccagatgtaagcacactgaatatgggggaaatagtagccctgtctctaggatgagacaataattcttaaactctga---ggacccagaggctggaggcaggggagcttcctcttaactcgttggcatttccagactgatcatactgccttttgcctcggatgggtttgacaaaatgagggtgaagatac--tcttcattctttcccttMgctggactgtgtctagcctccatccttcccttcggaaagtatcgatggcaaacaggagcctgtttattttcttgcag Sorex_coronatus gaaggggggactaggactggggact----------------------cccctgccaacgcttatctgtgtcccccctgagttgtggctgggttggtcttacatagtctacagaaagattgtca----------taagcacactgaatatgggggaagtgacagccttgtctccaggatgagacgacaattcctgaagtcaga-gtggtgccagaagctggaggcaggcatacttgctcttcactcgctggcatttggagaccgatcatactgtcttctgcctcgggtgggtttgaccaagtgagggtgaag-tactgtcttcattttccccctttgctggactctgcctagtctccatgcttccttttggaaaatattgatggcaaacaggagcctgtttattttcttgcag Crocidura_russula gaggcggggactaggactggggaattgtggggag-tttctttcccattccctgcaaagccttgtctctgtccctcctggtttgtggctgggctggtcttatgtggtc-acaagaaagttgtcataccctgatataagcagactagttac-ggggaaatgacaaccccagctcaaggatgtgatgacaattcctgtagtccaaagtggtcccagaggct-gaggcaggccaac---ctcttaactccttgacatttgag-actaatcgtgctgccttttgcctcgggtggatttgacggattgagggtaaagatactgtcttctttgtttcccttagctggactctgccaagtctccatccttccctttgga---tattgatggcaaacaggagcctgtttcttttcttacag ; END; BEGIN CHARACTERS; TITLE JMJD_intron_2; LINK TAXA = Taxa; DIMENSIONS NCHAR=1038; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Bos_taurus gtgggtgtctgccgagggctgcagggttcttcttcccaacttagcatcccaaagactcccaaattcctccttcccccaagagaacacagcctcatagacgcttaactgccggttggacagactgctgagggtaaacctacatggaaggcagtcctctgaagcagtgccagagattataaggtccttaccagctgcagtctgcttgccctaagcagtttttcatgactgcatca-tggcagtccagtgttaactgtttatgccattttgcaggatctcaggaattctgtgaactttctcaggggtccgaggcttgaaagtagaaataagaacccaag--acagccccaccccctctccgcggg----cttgggtttgctgtctcctcatggctgctttgagtcccccccaggttcatggtggaggcgtcagatcaggcagctggatggtggcc---------ttgaaacgaggaggcgtgtctggcaggt-gacggagccagcgtggctttgtgggagttattgttttccctga-----------------------------------------------------------------cgggatgggcactgtcgtcacctactttatagacgaggacaagggctcagagaggtgaagaaacttgccatgggccccctggtgggtgacaggcagggccctggccccagagctgagccaggcacctcaccaccctgtactgtccaccatggcccaaaggtctctct-gcttgtgacaaggcatgc-gagagagaagtggccagctggaaaatagagctgcccagcaag-------aaccagattcatcagttttatctgcaagtgccaggggcaagtgacctcagctcttcgcacctgcatctcctccagtgaagtggggtctccctccaccttgagcttttgtgccaatgaaaggagcccagcgtgaagcacgtttagcaggggcccagcaggtcttagcat-aacgatggcaatgctgacccctgtcttccaaatag Canis_familiaris gtgggtggctct--gagtatgggagctccctctgcctattccagcccccccgagactctccaattccgcctccccccaaggaaatgcagcctcgagctcacttcccgactggtcgcgggaactgccaagggtaaccagggattgcaggcagtgccccaagctcgtgccaggggttgtaggatccgcaccttccacagctcacttgctctaaacag--------gtgtgctcacctggcactgtggcattaggtcttaatgccattttttgggatttgaggggttccatgtactcgcccaggggcccgagg-tcaagagcagaagtgagaacccaagacacatcc-tatcccctctcagcggggct-cctgggcttgctccctcctcacctctgctcctggttcccctcagatgcatggtgatgagagcaggtcaggccgctggacaggggccataatgc--gggagatgagcaggggcctctagacggttgatcaggtccccggtggggtgtggagggagtgcttcccgctgaggcgaagagttctggctgccggaaacgttctttactgcggaccagtgccatgctt-ctgatcctaagagacaggtactgtcatcaccttctttacaaatggggtcaag------------------aacttcccaaaggtccctggg-----cagggccagggc-caggcccccaagttcagccaggcacttcagcaccccgtgctgtctgccgttgctcaaaggtctctcagctctgagacagggtgagcagtgagaactgcggccagcagggagatagaacctcccagcaagaacctcaga-tggcctccctgggtctctctgcaagcaccgggggcacatcaccccacatgtccgtgccc-agtgccgtgcagcagagtggggcagcccttccctgtggggttgtgtggggacgagaggaggccagtgtgaagcacatgtggc-ggggcccggcaggtcgcagcaaaagcgaccatgctgaccatccattttcgtctcctag Felis_catus gtgggtggctgt-gaggcccgggagcctcctcggcccatttcaggac------------cggcttccacctctcccccgggaaatgcagcctcgcacacgcttcccgaccggtcgcgtgggctgctgaggtaaacaagat--------cgctgctccaagttcacgccggaggtcgtaagatccgtggcgtcctcagctcacttgcgccaagcaggttgtagcgagtgctggcgtggcggtgccgcgttaagtcttcgtggcattttgcaggagctgagccatcccgtgggccttctcgggggcctgcggcttcagagcagaagcaagagcctaagacacgtcc-ccttctctctcggcggggct-cttgggctcgttccctcctcacatctgcatctggtctcccccggattcatggttgtaagagcggctcaggctgctggacagtggccgtaatgctatgggaaggagcaggggtctgtggacgggtggccgggtcaccgggggtccgtggagggggcggttcccgccgaggcgaggagctct-gctgcagg--------tttaccggat-----tgccaggtttcctggtcccgtgggacaggtactgtcatcgccccctttacaaatgggggcaagggcttagagaggttaagtaacgtgccagaggtcc-----------------------------ttggcgttcaggcaggcctgtctg----ctgcactctgtgccatggctccaaggtttcccagcttagagaggaggtgagcagagagagaactggccagcagggagatagaacctcccagcaagagcctcaggccagccccactggatctctctgcaagtgccaggggcacgtaaccccatgtgtctgcacccgagcgccctccagtgcggtggggcagcctgtcccccagaggttccgggaagacaaaaggagacctgtgtgaagcacacttagcggaggcccggcgaggctcagcgt-gcaggtgatggtgaccttacgcgtctgtctcccag Tursiops_truncatus gtgggtgtctgctgagggcggtgtggttcctcttcccaatttagcatcccagagacccccaaattcctcctccccccaggtgaatacagccccacagacacttcactggcagtgagatggatggccgagggtaaacaggcattaaaggcagtgctctgaagcgatgccagaggttgtaagattcttagcttctacagcttgccggccctaagcagtttttaaggagtgcatca-tggaagtccaatgttaagtccttatgcagttttgcaggatctcaggaattctgtggagtttcttaggggttcgagccttgagagtagaaataagaacccaag--acagccccaccccctctgcgtggg-ctccctgtgtttattctctcctcatgtctgtttccagtccccctcagattcatggtggcgaggtcagatcaggcagctggacagtagcc-------ttttgaaatgaggaggcgtgtctggcaggtggatggagccagggtggttttgcggagggagtggttcccgctgacac---------------------------ttgaccacg------tgccatgtctcctggtcctgtgcgacgggcactgtcattacccactttgcaaacggggacaagggctcagagaggtgaagggacttgccacaggtcccctggtgggtgacaggcagggcccaggccccggaggtgagccaggcccctcaccaccccgcactgtcctccatggcccgaagatctct---gcttgtgacagggcgagcaaagagcgaagtggcaagcagggaaatagagctgcccagcaag-------aaccagattcattggttgtatctgcaagcgccaggggcaggtgacctcgcctctttgcacctgtgtctcctccagtgaattggg-tcttcctccacctcg----tttgtgccaatgaaaggagaccagcgt--agcacatttagcagggacccaatgggtgttagcat--acgatggcgatgccaatccctgttttccaaatag Equus_caballus gtgggtggctgctgagggcggtggggctcctcttcccacttgagcatctcgaagtctccctggattcctcccc-ccccagtcagtgcagcctcacgggcactgcactgccagccggatggattgccaggggtaaacaagaattggaagctctgctctgaatttaggccaaaggttatcagattcctcccctctacagtttgcttgccctaagcactgcttaatgagtgcttaagtggcagtgtcatgttaggccttgatgcagtttcgcaggatcttaggaattctgtggactttctcaggggccc--------------gaaatacgaacccaagggacagctgcctcccctctccgtggggctccttgtgtttgctccctcctcacatctgcttctcgtcctcctcagattcgtggtggggccatcagatcaggcacctggccagtggccataatgctttggacacgagaaggcgtatctggaaggt-------------gtagttctgtgcagggagtggtccccgctgacacgaggaattccaattgtaggaaacattctttgctacgtaccagtgacgcgtttcctgatcccatgggtcaggcactgtcatcacccccttcacaaatggcaacaagggcgcagagaggttaagtaacttgctaaaggtcccctggtctgtagcatgcagggcctggaccccagagttcagacaggcacttcattaccctgtactgttcaccattgctccaaggtttttgaggttagtgacaaggtgagcaaagagagaagtggcaagcagggaactagagctgcccagcaagaactgcaaaccagattttctggatctatctgcaagcatcaggggtaagtaacctcacctctctgtgcctcagtttcctccaaggcagtggggcagcagaccgcctcgtaaggttgtgacgatgggaggaaaccagtgtaaagcacatttagcagaggcccaagaaggcttaccaaaaatgatgaaagtgacaatacctgtttttctgatag Pteropus_vampyrus ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Myotis_lucifugus gtgggtggctgctgagggccagaggttctccctcc---tttcagcat--cccagactccctgcactcctcccc-ctctaagtagcacagcccc-tggacatgtcactaccaggcgagtgggtggctgagggtaaacaagaactgacagcagagctctggatcttcgccaga---tctaagactctcaccctccc--acttgcttgcccgaagccgtttttaattcgggcttca---gcagtccagggttaagtctttacgcagttttgtaggatcttgggaattttgtgcacttcctcgagggcccgaggtttcagagtagaaataagggccccagaaacagcctgtccccttctct---gggcaccttgtgtttgcttcctcctcacacctgcctgtagtccccctcaggctcaggctcagg-----gagacaggcagctggaaaggggccgtatcactttggaaatgaggagg-gtctctggaagggtgagcgagtcagcgtagccttgtggaggaagtggctcccactgagacgaggagctctgactgcagcaagcatgctttgctgtgtgccagtgccatgtttcctggtcctgtgggacaggcacagtcgtcaccacctttgc-agtgatgacagaggctcagtgaggttaggtaacttgct--agatccccaggtctattgcggcagggttccaggccccagggttgagccaggcacttctccacgctgtactgctggcca----------tttactcagctgcgtgacaaggcgtgcagagagaaggctggcaagctgtagcagag---cagccagggagaactgcaaatgaggtttattggatctgtctgcaagcgccaggggcgg--agcctcacctctgtgggttctagtccagtgcagtgcaatggggcagcttccacctc--acaagtggtgatgctgagaggagaccagtgtccagcgtgctgagcagaggccctgcacgcgcgagcaa------tagtgatgaagtgacgtgtttttctgacag Ailuropoda_melanoleuca gtgggtggtt---------------------ctacccattccagcgtcccggggactccccagttccacctccccccaaggaaatgcagccttgcacacacgtcccgaccgtccgcgtggatcgctaggcttagccagagattacaggcagtgctccaagttcaaggcagaggtggaaagctccataccttccaccgctc-ccagctccaagcgggttctagtgagtgctcgcttggcggtgtggcgtgaagtcttgatgccgttttgcatgatctgaggcattccatggaccttcccaggggcccgaggcttaagagcagaagtaagaacccgagacgtgtcc-cctcccctccaggcggggctccctgagcttgctccctcctcacctct------------gctcggatgcgtggtggtgaccgcaggtcaggccgctgggcggtggccagcaggc--cagaaaggagcaggggtctctggatggcagatcaggtccccggtgggtcgtggagggagtggttcccgccaaggcgaagggttccggccgcaggaaacgttctttactgcagatcagtgccgtgtttcctggtcccatgggacaggtactgtcatcaccctgcttacaaatgggca-------------------------------gaggtccccagc-ccatcacgggcagggc-caggcccccgagttcagccagc---------actccatgctgtctgctctcgctccaa----------------gacaaggtgagcagagagagagccggccagcggggcgatggaaccgccctgcagatacctcaaaccagcctcaccgggtctctctgcaagcgccaggggcacgtcaccccacgtgtctgtgcccgagtgcgctccagtgaagggggccagtctctccccgtggggctgtgtggagacgagaggaggccagtgtg----------gccaagggcccagcaggtcttagccaaagtgacaatggtgaccatgcatatctgtctcatag Homo_sapiens gtgggtggtcgctgagggaggtgaggtcccttttcccattttagcgtccccagggctccctgaattcctcccgacccagggaaatgcaaccttgtagatgcttcactagcagcctgactgattgccaagggtaaaaaagagtgaaaagaggtgctctgaatttatgccgcaggttatgggattcttaccttctac--cttgctcgccttaagcggtttttaatgagtccctaagtggcagtcctagaatgtttctttatgcaattttacaggatcctagcaatttca--gaccatctcagggccct--aagctaagagcagaaat---aacccaagagacagcc--cctctctctctgagggattc--------------tctcttgtgtttgtttctagtccttctcagaatcatgatggggagatcagatcaggcagctggagcgtggctgtcatgctttggaaataaggaggcatctctggaaggtagatggagtccgcgtggtttcgcggagggaatggtacccgctgacacgaggaattctcattgcaggaaggcttctttactacgtacctg--------------------taggacaggtgttgtcatcaccccctctgtaaatggggacaaggactc----gggttcagtaacctgcctcagatcccctggcctgtaactgatgaggcccagg--ctagagggcagccaggc-------caccccacgctgtccgctattgttcaaaggtttctcagcttagtgacaaaatgagcaaagaaagaagtggcaagcagggaactagagcagcccag---------ccaaccagacttaccggccctgtctgcaagcactgtgagcagggagccccacctctccatgcc---ggttcctccagtgaagctgggcagtccttgtctctgaggttttccgaggatgaaaggggaccaatgcaaagcacacttagtactagcccaacagatattagcag------tgacgatgccaatgtgtgtctttctgctag Macaca_mulatta gtgggtggtcactgagggaggtgaggtccctcttcccattttagcgtccccggggctccctgaattcctcccctcccagaggaatgcagccttgtagatgcttcactagcagcctgactgatcgccaagggtaaaaaagaatgaaaagaggtgctctgaatttataccgcaggtgatgggattcttaccttctac--cttcctcgccctaagcggtttttaatgagtccctaagtggcagtcctaggatgtgtctttatgcagttttgcaggatcccagcaatttca--gcccatctcagggccct--aggctaagcacagaaat---aacccaagagacagcc--cccctctctctgagggattc--------------tctcttgtgtttgtttctagtctttgtcagattcctgatggagagatcagatcaggcagcgggagcgtggctgtcacgctttggaaataaggaggcatctctggaaggtagatggagtcggcgtggtttagcggagcgaatggtacccgctgagacgaggacttc-cattgcaggaagccttctttactgtgtacctg--------------------taggacaggtgttgtcatcaccccctctgtaaatggggacaaggactcagagaggttcagtaacct-ccacagatcccctggcctgtacctgatgaggcccagg--ctagagggcagccaggcccttcagcaccctgcgctgcccactattgttcaaaggcttctcagctgagtgacaaaatgagcaaagaaggaagtggcaagcagggaaccagagcagcccag---------ccacccagacttaccggccctatctgcaggcactgcgagcag---gccccgcctctccgtgccc--ctttcctccagtgaagctgggcagtcctcgtctctgagattttccgaggatgaaaggggaccaatgcaaagcacacttagtactagcccaaaaaatattagcag------tgatgacgccaatgtgtgtctttctgctag Erinaceus_europaeus gtgggtggt--------gcagaggggcccccctcc-------ggctt--------cttcccgtcttcccctcccctcagcgagtcaggctaactgagacacttcccagccacccgcgtgaaggaccccagg---------------------gctctgaatttctgccaga-----------------cggtcctgcctccccagccctgagctgtgtgtaatggaggctccc---gcgctctggtgtgacgtct----acagttgtgtgggg-ctcggggactctgtggacctagtggggaatccgagacctaagatggaaagaaggacacacacacacacacacaccacacagccctgagactc-----------tttctcctcacatctgcatcagcc---cctcagagtctccatagggagagcagattgggcaccacaccagcgtgtg------tctcagagcgaggaggttgctggacagcccggctccagtc---------------------ccggccccaccgaggcgaggattccctgtcatcagagaccatctttgctcggtgtcggtggcatgtctcctgatcccagggcgcaggtgctgtcaccttcccctttacaaagatgagcaagggcccagagaggtgatgtgacatgcccagggtcccctggaatgtaaccgtcgggccccaccccccccagtgcagttagccctccatccgccctgtactgtcagccttggcacaaa-gttctcccggccaacgacggggcctgagggaagtgggacatcgcagagggagagacagggcccctgcacaaccttcaaaccagccccactggctcccc-------------gggcaagtgaccgcacctccccgtgtctgcgtttcccacagctcagtcgggcggtctctccctcaaaggtctcg----------gggaggcca------agtgctttcagcagcgacccagcccgcgttcacagcgtggagcgtgacggcagtgcccgtctctcccgcag Neomys_fodiens gtgggtggctgccatggcccctgggacta---------------------------------------------------ggggtggggct-----------------------gagtga---gcagaggg-----------------------------------------------------------------gctccactgcggtcagcggcatctcaagggagccccatcc----------g---------cctccaccctggcagaaccctagggtgcctgc-agccttttcagaagctaggggcatcacga----------taacccaggt-cagccgagtgaccctcga------------------gtgtctctcgcatgcccctcacgactcctcatcagact-----------------------------------------------------------------------------------------------------------tgactcccatccccag----------------------------------------------------cctagtagcacagagcaggtgctgt-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gatggggagggcgagctggccagcaggaacctgggcatccagatgcagtgtc----------------gggccttggagcccatctctccgggcgtg---------cagggctgtcggg------------c---------------------------------------------------------cagatcttggcagagatg-gcacggtgacgagacc---ttccctcccag Sorex_coronatus gtgggcgact-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ccccctccc--------------------tccccagccacgcctggctcacggctgcctgt-gacgttcccggggtcagga-------------------------cagac-cgtgtgtgtg---------------tgtctggcgtggctccctccccgtggctccctcggaccccctgcagacttggggt-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ggcacggagcaggagctgt-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gggctgaggcgggagcttcccacgcagagcttgggggtgtggacatagagac---------------------------------------------------------------------------------------------------------------------cccgttgggccgca--cccacaga--ccaggggtcgagctgccggcgacgagacctttccttcccccag Crocidura_russula gtgggtggctgt---gggctggtggctcatatcgc--------------catgtactcccccatctccccagcc-----------------tgagtgaca--------------aggtaagccggaaagggagagcaggcactg------------------------------------------------------------------------tactagtgcatgcctggtcagcagttccac-----------------actggctggatcctagag--cccatggactttctaataagctaggagaatcaaaa----------taaacctggcatagctgagtgcccctatc---aggctatctctatttgttccatcct---ggctgcttccagtccctctcagactatggagagcagaggcag-------------------------------------tggggagatgtacca------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gagacaggagaagagcaggccagcaggaacctacacacacagtcagtgggtttttctgcaagcacccagggttggttgctctgcaaagtggtacccgagggccacacagcctaggggtgtggattctagcc---agagtctccagagaacacagcagact-ccagtaggcccattgaatagtg--tccatgaatgttagcaaagatgatgacagtgatgagacctttcctccttccag ; END; BEGIN CHARACTERS; TITLE MCM3_intron_2; LINK TAXA = Taxa; DIMENSIONS NCHAR=419; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Bos_taurus gtgag---------tttccaagaggcatccctagttctgagtgagaatggctcctctctcttcc---caggttggagcaagcttcccaggggaggacatggatgaaatattttgaccaggaagcccttagtacatcacctctatgttttttacttcttctcaaagtagatggtgggcattttcct-----------ctctttctatgttca-ctgagtatcatttccccatc--------actgagttaaaactggcctgcagctctgatgtgttttactggggcttgtagaatggcaggagaaagcagaatctagattttcactcctaagctttgatcaaataagaaacttctgttttgtgggtcaagttttttgaattcttctctgcctgatgattctctgc-------------ag Canis_familiaris gtaagtggcagggctttccaagaggataccctggctctgagtgatagtggctccctttctcttccccttgattggaacaggcttcccaggagaggacctggatgaaatgttttgatc--------cttgttgcctcacctttttttttttttcttcttcccaaagtaggtggtgggtgttttcctctcaacagctccgccttccatgtttaactgagtatcgtttctgcatctttgagaagttgaattaaagttaactgtcagttctgatgtattttcccaagtcttctagaacggcaggagaaactaggaactagattttc--------------------------cttttggttttgacggtcaattttttgaaatttttctctgcctaattattctctctcttgccgatgtgcag Felis_catus ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tursiops_truncatus ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Equus_caballus gtgagtggcaagggtttccaaggggatgtcctggctctgggtgagaatggctcccctctctctcccccagattggaacgggcttccctggagaggacctggatgagatattttgacctagaagcactctttgcctcacccctatgtttttatcttcttccaaaagtaggtggtgggcgttctcctctcaagagctcctccttccgtgtttacctgagtatcagttctacatctttgataagttgaattcaagttggcccttggttctgaggtggttcactgagcctgggaggatggcaggggcaggtaggagctggattttcactccttggccttcctcatctaagaaacttctgttctgagggtcagttcttttgagctcttttctgcctaattactctttctcttgcccatatttag Pteropus_vampyrus ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myotis_lucifugus gtgagtggcaagtgtttccaaggggataccctggctctgggtgagaatggctcccttctctcttccccacattggaactggcttcccaagagaggacctgggtgaaatatttttaccttgaagccctctttgcctcaccttgtttttttttttaaatccccatgggaggacatgagccacttcctcttaagtgctcccccttccatgtttagttgagtatc---------------------------------------------------------ctgagtcttgtaggatgggaggagaaagtagaagccagattttc-ctccttggccttcatcgtttaagaaacttctgttttgagggtcagcttttttgagttcttctctgcctaattattctttctcttgtccatatgcag Ailuropoda_melanoleuca gtaagtggtaagggttcccaagaggatatcctggctctgagtgacaatggctcccctttctcttcccccgattggaacaggcttcctaggagaggatctggatgaaatgttttgacc--------ctcattgcctcacttctgtgtttttttcttcttcccaaagtaggtggtgggcattttcct-ttaagagctcctccttccatgtttaactgagtaccatttttgcatctttgagaagttgaattcaaattagctgtcagttctgatgtattttactgagtcttctaggacagcaggagaaagcaggcactagattttc--------------------------cttttatttttgagggtcaattttttcgagtttttctctgcctaattattctctctcttgcccatttacag Homo_sapiens gtgagagg----------caaggggatatactggctgtcagtgagaatggctcccttccctcttggccagattggaaca-gcctctcaggagaggacttgtatgaaacagattgatctacaagccctcgtag-ctcacctttttttttttttttttttcaaaaagtgggtggttggcattttcctcccaaatgcccctccttccatgtttagctgaatatcatttttatatctttgataagttgaggtgaagttggtccttagttctg--gtattttactgagtcttataggatggtaggagaaagcagaagctggattttc--tcattgtttttaatgatctaagaatctgctgttttgaggatccatttttttgagttctgcccagtctaatttttctttctcttgcttatgtacag Macaca_mulatta gtgagtgg----------caaggagatacacttgctctcaatgagaatggctcccttccctcttggccagattgaaaca-gcctctcaggagaggacttgtatgaaatagattgatctagaagtcctcatag-ctcaccttattatttttattttttccgaaaagtaggtggttggcattttcctcccaaatgctcctccttccatgtttagctgaatatgatttttatatctttgataagttgaattaaagttggtccttagttctg--gtattttactgagtcttataggatggcaggagaaagcagaagctggattttc--tcattgtttttaatgatccattcacctgctgttttgaggatccattgttttgaattcctccctgtctaatttttctttctcctgcccgtgtacag Erinaceus_europaeus ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ttcctttcaagagcactgttttctatgtattgctaagtatcatttttgtatttctgataagttagattaaagttgtccgtcagttctggtgtgtattac-----------ggatgttaggacaaagtggtacttttggttttatttcttggtcttattcatgtaaggaatttttgtattgaggtata---ttttaaagttcttttctgtctaattttttttcttcttacctataaacag Neomys_fodiens gtgagagcagaagggKctcaggggc---------tcagaggggggaaaggctcctctctcccccc--aaggatgggacaggcttcccaggacgggacctcggtgtggcc---------------------------------------------------------------------------------------ttccttccttattcagatgcgtaaatatcacacatctctaataagatgagttcaggttggccctcggttctgatgggtagaac-------tacttgatggcattaggaagtaggacttggaattttgtttcttggccatgattgtctaag---tttcttttttggaggtgggggattttaaattat-----------cctttcttctt---ttccacatgtag Sorex_coronatus gtgagtggcaagggctttcagggg-gtgccttatctctgagtgagaatgcctcttctctctccccccaagcctggaactggctttccaggagaggacctggatgcaccatactgacctagaaggtctcattgccttacctcttgtgttctttcttcttccactagtatgtggtgagcactttccttccaagagtgcctccttccatattcagatgtataagtatcacacatctttagtaagatgagttaaggttggccctcggttgta---------------------ctgatggctttaggaagtaggacctgggttttcgtttcttgaccctaattgtttaagacagtactttttggggg--------------------ttccaattatcctttcttctgtccatatctttgtag Crocidura_russula gtgagtggcaagggttttcagggggatatttagactctaaatgagtatggctcctctcccc------cagattggaactggcttcccaggagagcatttggttggagcatgttcacctagaagccctcattgccttaccctcagtttttttccttctttcagaagtatgtggtgaacactttcctcccaagagcactttcttttttgtttagcatagtagcatttatacatctttgataggatggattaaagttagctc-cagttctgatgcattgtac-----------tgatggcattaggaactaggacctgagtttttcttttttgcctctgattgtctaagaaacatttttggggaa---------------------ttctgtctaattacttttttt---attcctttgtag ; END; BEGIN CHARACTERS; TITLE MYCBPAP_intron_11; LINK TAXA = Taxa; DIMENSIONS NCHAR=472; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Bos_taurus gtaccagggggaagctgccc-actcacc----------ctacagcccaagtctcgctcatgcccaggccctgcaagcatgagcccctcttccca--cctgtccaccccatgtcttccatgaagtgtgccgtctc----ctgttcccatcagctgggggaatggcagaa------------cgcaggagtgagccaggggcagaaa--------------cagttgcccatatacctgggcctgaggctag-----------------------------------------------agtcccacatcccaagaacgccctcaggtcttcacaagccgggacgctggtcaccctaaccaaggcttagttaa-------------------------------ctttctacccacaggcttggggctcagca-gctcccacctggtgaaaacctctgtctctgtccctctcag Canis_familiaris gtacct------agctgcactgctccctggcttttgccgaggagccagagtttggctgat-----gctcctgaaagtttgagcccccctccctggcctcatccctcccatttcttccatgaattgtgtcctctcccaactgtccatgtcttttggtggaacggtcatactcttgagatcacagagaggagagtcagggagcagaaactttctagaggttcagttacctatatgctcagacctgaggctagga--accctctccctgtttgcctgagacttccccagtttttgcacaaagtcctacgtcccaggagaccccttggttctgggcaaatcgggatgtcggtcactctgcctggggctcagttaactgtgtatgcaaaggtttagggttcagttaactttatacacacaggcttaaggcccagctgactcctgtgtggtgaaaacctctgtcttggtccctctcag Felis_catus gtaccc------agctgccctactcccgggctcctgtcgaggagccaaagtttagctga-----agtgcctgcaagtttgaacccctctcccctgcctcctctcgtccatttcttctgtgaattgtgtcctctcctaactgtgcatgtctgttggggaaacagccgaactc--gagaacacagagagtctcgccagggagcagaaactttctagcggttcagttacccatacgctcaggcctgaggctgggatgaacccctccccgtttgcctgggaccttgccagtttttgcgcaaagtcccacttcccaggaaacccctcggttctg-------------gtcaccaccctggcccggggcccagttaactgta--tgcaggggcttagggctcagtgaatattg----tgcaggcttggggctcagctagctcccttgtggtgaaaacctccgtctctgtccctggcag Tursiops_truncatus gtaccagggagaagccgccccgctcacc----------ctgcagccaaagtctagctgatgcccagctcttgcaagtgtgagcccctcttcccg--cctgtccctccca----tcctgtgaagtgtgttgtcgcctgactgttcctgtcagctgggggaacggtggaacgcttgagaacacaggggagtgagccggggagcggaaacattctagatgttcagttacccatatgcacaggcctgaggctgggacgaccacctccct-cttgcctgggacattcccggttttcgcaaaaagtcccacatcccaggaaagccctcagtcctacgcaagctgggacgttggtcaccctaaccagggcgtagttaa-------------------------------ctttatacatgcaggcttggggctcagt--gctcctactcggtgaaaacctctttctctgtccctctcag Equus_caballus gtacctaggagaagctgccctgcacacccgctcctgccgagaagccatagtccagctaatgcccagctcctgcaagtttgagcccctcttccccacctcatccttcccatttctatgctgaagtgtgtcatctcctacctgttcatgtctgttgg-ggaacggttgaactcttaagaagacagggaggtgagccagggagca------ttctcggggttcagggacctatatgcacaggcctgagggtaggatgaccagctccctgtttgcctgggactttcccagttttagcacatagtcccacatccctggaaacccctcagtcctgggaaaaccggaacgttggtcaccctatctggggctcagttacatgtgtctgcataagcttagggctcagttaactttatatgtgcaggcttggggctcagctagctcctgctttgtgaaaactgctgtctctgtccctctcag Pteropus_vampyrus gtacctggcagaagtggcattgctcaca-gctctcgtcgagaagcca-tgtctagctaatggccagctcc-----------acttccctgcctcgttccccatccacagtttcttctgtggcatgtgtcatcgcccaactattcatgtctgttggcggaagggtggaactctttagaatacagataggtgagccagggagcagaggcattctaggggttcagttacctataggcacaggcctgaggctaagacaaccaactccctgtttgcctgggactttcctagttttagcactaagtctcacatccta-aaaacaccttagtcctggacgaaccagagcattggttaccttacctggggctcggttaaatgtaactgcatgggcttagggctcagttaactttagacatgcaggtttggggctcggccagcttctctttattgaaaacctccatctctatccctctcag Myotis_lucifugus gtacctaggaggcacggccccacccacc---------------------------cagaagcggacgtctggcgagttcaagcccctcttccctgcctcctcccttcaatttcctccgtgatgcgtgttatctcccagctgttcatgtctgttggggg----------------------cagggaggtgagcgggggagggggagcattctaggggttcaggtacat---tgcacagacccgaggctgggaggaccagcggcctgttt---cgggggctttcccgtttcagcataaagtcccccaacccaggaaagccctcctccccgggcaaagccggacgtgggtcaccctgcctggggctcagttacacgtatcaccagaggcttagggcctagccacctgcagacacgcgggcgtggggctcagagagccccttctcggggcacacctctgtctctgccccc-tcag Ailuropoda_melanoleuca gtacct------ggctgccctgctccctgcctcctgtcgaggagccaaagtttggccaat-----gctcctgcaaggttgagccgctgtcccctgcctcatccctcccatttc----------tgtgtctgctctgaactgttcatgtctgttggggggacggtcaaactcttgagaacacagggaggcgagtcagggagcagaaactttct-gggattcagttacctatatgctcaggcgtgaggctaggatgaccccctccctgtttgcctggaacttcccagttttt--------gtcccacatcccaggagacccctcagttctgggcaaactgggatgtcggtcactctgcctggggctcagttaactgtatatgcctaggcttagggctcagttaaccctatacatgcaggcttgtggcccagctagctcctgtgtggtgaaaacctctgtctcggtccctctcag Homo_sapiens gtactcgggagaagccaccctatgtgctagctcctgtcgagacatcaaagtttagttatggcccagctcctgtaagtttgagccctgcttccctgccttgtccctctcattccttctgtgaaatgtgtgg---cctgactactcatgtctgttgagagactgatggaa--cttgagaacctggggaggtgagccagggagcagaagcgttctaggggctcagttatctaggtgcacaggcctggggctaggatggccagctctctgtttgcctgggac---------tttagcacaaattcccacattccaggaaacctctcagccctgggcaaactgggatgccagccacctggcctgggactcagttaactgcatgtagg-------------------------agcatgtaggcctggggctcagccagctcctgcatgttgaaaacctcggtctctgtccctctcag Macaca_mulatta gtacttgggagaagccaccctacacgctggctcctgtcgagacatcaaaatttagttatgacccagctcctgtaagtttgag------------------tccctctcattccttccgtaaaatgtgtgg---cctgactattcatgtctgttgagagactgacggaa--cttgagaacccggggacgtgagcctgggagcagaaacgttctaggggctcagttatctagatgcacaggcctggagctagggtggccagctctctgtttgcctgggac---------tttagcacaaaatccccctttccaggaaacctctcagccctgggcaaactgggatgccagtcacctggcctggggctcagttaactgcatgtagc-------------------------agcatacaggtctggggctcagccagctcctgcatgttgaaaacctcagtctctgtccctctcag Erinaceus_europaeus gtaccc---------------actcaccatctcctgtcgagaaaccaagatcgagctaatacccagttcctgcacacttggacccctcttccccatcttgctgcctctatttcttctgtgaagcatttca---tctagctgttcatgtctgatcgggagaacagtgacctcttcataacacggggagatgagccagggagcagaggcattctaggggttcacttacttatgtgcacagagctg-ggctagaatgcagag-gccatgtttgtgtagaactttctgagtcctagcacatagtcctgcatcccgggaaacgcc--aggtttg----accttgtatggcagccaccctacctggagctcagttaagtacatgtacataggcttggtgctcagttaactttatatatgcagacttagggcacatct-gttcctgtgtgttaaaaatctctgtctctgtccctctcag Neomys_fodiens gtacccg--------------------------------------------------------cRcacccgctcagccaccgtccctgttccccgccttgccttgcccactgctgctctgaagtgtgt----------ctatccatgtctg-----ggtgcagggaaactcctgagatcacagcaaggtgaa-cagggagcaggagcattctaggggttcagctgcttctacgcctc-------tgccagggtacccagattcctgtt----tggaacgatcccagttttagttcaaagtccgacaggcctgggaacccc--agtcccg-gaaaacccggaccgtgg-------gcctggggctcccttaagtgt----------tgccaggcctcagctggcttctgcca----gaaccctggctctg----------------------------------gcctctcag Sorex_coronatus gtacac--------------------------------gggaa--------------------ggcaccggctctgtcacagcccctcgtccccgccttgtctctgtccctgcttctctgacgtgtgt----------ctgtccatgtctaggggcgggaggggggaaaactcaagat--caaggaggtgag-cagggagcagaagctgtctaggggttcagctgctcctatgcctc-------tgctagggtgcccagcttcctgtttgtctggaactatcgcatccttagctcaaagtctgagaggccagggaacccc--agtcccg-gaaaacctgaaccatggtcatcctccctggggctcagttaacgctgtatatgtgggctcggggcttagttaagtgtgcatt----ggactcggattcagttaactcccgcccgttg-aaacctctgtctctg-gcctctcag Crocidura_russula gtaccc---atgtattgacttagtcttggtgtccagtcggaggtccacagtccagtaactacctgtcccccaggagctggagcacctctccccaatcctgctca-ccccctgcttctgtgaagtgtgt----------ctgtccatgtctggggcaaggggcaggcaactcatgaaaacacaggaagatgag-ccaggagtaggg------------------tatttcagggctcagctatgaagc----acaactgttttcctgtttgtctggaactatcctaggtttatctcaaagt--------ccaggaaagccc--agttttg--aaaatttgaactgtggtcattttccttagggctcagttgactgtatacaca---ggcttgggctcagttaattatgtact----ggtttggggctcagttaactcctgccagttgaaaacctccatctctgtccctctcag ; END; BEGIN CHARACTERS; TITLE PRPF31_intron_3; LINK TAXA = Taxa; DIMENSIONS NCHAR=590; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Bos_taurus gtgagtagggagggcaagcagaaacagccctgcctggtgtcccccacagcctcgggcgggcaggatccgccaccgtccctgctggccttgcccagggtcttgcccctaagccctagctcaaacataggttcagctactg-aacaatgg-tgacatgagaaggaagtttattttcctctcatgggaaagtctggatgaggagc-------------------------ccaggctgtctgagtcttactgatctgtcacctgtttcgtggtacaaagtgactacctacctccagccatcacctctacatccccatcagcaaaagagaagaggaggagggcacatttctttaaaagagtgacctggaagttgcccgtgtgacttgctctcacgccttatggaccagaactgatctacacggccgcagccagcagtaggggcagc------------ctttgtgctgtgtgtctgtgaacccagctgccaggaggggctccctcactgcaggacgaagggcagatgggtgctg-ggggagcccgcggcatctgcctcccctcatcaggctcctgcccgccctgtgcccc-cag Canis_familiaris gtgagtg-gcaggaagggcagagatggccctgcctgctgtcccttccactctcggacaggcaggacccgttactttccccactggccttccccaagatcctgccccagactcctagctgtagtccagattcagctgccataacagcagcttaaa-aaaaagaaagtgtgcttttctccgatgtgagaatctggatgaggagtccagccctggag-------------tcaggctctttctgtc---ttgacctgccacctgtgtcagggcacaaagtgactgtccacctccagtcatcacctccacatccccaccagcagaagggaagaaaaagagggcacagttctttaagggggtgacctggaaattgcatgcatcacttcatatgatatcctgtagaccagaactaacttgcagggccacacct---------ggcagcaggggagtagcg-tttttgctgggtacccacgaacccagctaaattcaggggttcatttatttaaaagaagcagggagatgggtgttgcggacagccagtggagtctgcctccccttatcagctacctgttctcccta----ccttag Felis_catus gtgagtgtgaagggcgagcagagatggccctgcctggcgtccctcacggtcccgcagaggcaggatccgtcgccttccccactggcctct-ccagggtcctgcccccagactctagttcaaggccaggttcggctgctgtagcagtggcttatttgagaaggaagtgtgttttcctgtgatgtgagagtctgggtgaggaccccaggcctaaagtcgcggcatctggtcaggccctttctgtcttgttgatctgccacctgtgtcagggtccaaggtgactgcccacctcca--------------catcccaccagcaaaaggaaggaggaggagggcacagttctttaa-ggggtatcctggaaattg--catgtcacttcagatcacgtgtcgtaaaccagaactaactcacgtggctgcat------------gcagcagggaaacggcg-tttttgctgggtggccgtgagccccgctaaattcagggcttcggtcact-aagggaagaggggcagtgagtgttggggacagtcagcggagtccgcctcccctcatcagacacctcgcctctctgtccacttcag Tursiops_truncatus gtgagtgggaagggcaagcagagacagccctgcccggtgtcccccacagcctcgggcaggcaggatcagccgtcttccctgctggcctttcccagggtcctgcccccaagccccagctggaatccaggttcagctgctgtaacagtgg-ttacgtgagaaggaagcatattttcctctcatatgaaagtctggatgaggagt-------------------------ccaggctctttctgtctcattgatctgccatctgtttcatggtacaaggtgactgcccacctccagccatcacctccacatcctcatcagcaaaaggagagaagaggagggcacatttctttgagggagtggcctgcaagttgcacatgtgacttcagctcacatcttgtagatcagaactaactcccatggctgcatccagccataagggcagccgggaaatgtagctttgtgctgtgtgtccgtgagcccagctataattaggggttttgctactgaaggaagaaggggaaatgggtactg-agagagccagcagagtcttcctcccctcattgggctcctctccgccctgtcccccttag Equus_caballus gtgagtgggaagggcaagcagagatgaccctgcctggtgtccttcacaccctcggacaggcaggatccgctgccttccccactgtcctttcccagggtcctgcccccaagccctagtttgaatccacgttcagctgctgtaacagtggcttaaataagaaggaagtgtattttcctctcgtatgaaagcctggatgaggggtccaggcctggtgtagcagcctctggccaggctctttctgtcttgttgatctgccgcctgtttcatggtgcaaggtgactgccctccaccagccatcacccccacatccccaccagcaaaaggagagaagaggagggcacagttcttcaagggggtgacgtgagagttgcacatgtcacctcagctcacatcctgtagaccagaaccaactcatgtggcctcatccaggagtaagggcagccaggaaacggagcctcatggcgggtgtccgtgcacccagctaaagctcggtggtttggttactaaaggaagaggggaaacggctgctggggcaa-------gactctgcctcccctcatcagacac-tcccgtctctgttctcctcag Pteropus_vampyrus gtgagtgggaggggcaggcagaggtgaccctacctggtgtccct---------ggacaggcagcatccgccaccctccctgctggcctttcccagggtcctgcccccaattcctagcctgaatccagatttagctgctgcgacagtggcttaaagaacaaagtcatgtatttcactcttccacacgaac---agttcaggctggtctcctggagtagcagcttctggccaga--ctttctatcttgttgatctgccacc--------------aggtgactgcctacttccagccatcatctccacattcccaccagcaaaaggagagaagaagagggcacaattctttaagggggtgacctggaagtcacacatgtca-------------cttatagaccagaactaactcgtg-------------------agggagccaggaaatgggcctttgtgctgggtgtctgcctgaccagctaaagttcgggtttgctt----------agaaggggaactggaggtgggggacagccagcagagtctgt--cccctcatcagacacctcccatccctgtctacctcag Myotis_lucifugus -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ailuropoda_melanoleuca -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Homo_sapiens gtgagtgtggggggcaggcggagacagccccgtgtgacgtccctcacgccccc----------------ctcccttccccactggcctttcccagggtcctgcccctaagcccaagctcagatcgaggttgacctgctgtcacagtggctgaaataagaaggaagtgcgttct---ctcgcgtatgagtctgagtcggggatggtgtggccgcttggctgcctgtagcccggctctttccatcctgttggtcggccacctgcctcacggtgcgaggtgactgcccacctccagccatcacctccgcattcccaccagcaagg-------------cgcttcttttctttaaga------------------acatgtcactgcagctcacgttttacagaccagaactaattcccctggtcacacctagcggtaaggacggctgagaaa----gctgtatgctg-gtgcccgtgtgccaggccacaagccagggcttcagttactaaggaagaaggggacatgggtgttagggccaaccagcagagtctacctcatctcacccgacaacctcctgtcccgtttaccctag Macaca_mulatta gtgagtgtg-ggggcaggcggagacagccccctgtgacgcccctcatgccccc-----------------tcccttccccacgggcctttcccagggtcctgccgctgagcccaagctcagatcgaggttcacctgctgtaacagtggtgtaagtaagaaggaagtgtgttctc-cctcacgtatgagtctgagtcggggacggcgtggccgcttggctgcctgtaacccagccctttccatcttgttggtcggccacctgcctcgtggtgcgaggggactgcccacgtccagccgtcgcctctgcattcccaccagcaagg-------------cacttcttttttttaaga------------------acatgtcactgcagctcacattttacagaccagaactaattcccctggtcacacctagcggtaagggcggctgaaaaatggggctgtatgctg-gtgcccgtatgccaggctacatgccagggcttcagttactaaggaagaaggggacgtgggtgttagggccaaccagcagagtctgcctcgtctcacctgacacccgcctgtcccgtttaccctag Erinaceus_europaeus -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Neomys_fodiens gtgagtggggagaccttggag-------------------------------------ggcagcatcc---------------ggcctctcccg--gcccctcc---------tagctgggcttcagggtgaactgtgctggcaaaagcttaggagctcttgtgggtcggcatccattcaggtgcccgcctggggccagagccatagcacagcggggaa---cccggtcaattcctggcatcccatgttgtcctccgagcaccgctgagtgcagagccaggagtaacccctgagcaatgccagtgtggccata--------------------------------aaatcaaagagtgggcgcatacctgcagccatcaggtctgt---------------cggagctgactcattt------------------agggagcagaaagggaagg-----------gggggtctgtaccccaccaga------------agtcactgaagagggcgggcatctgggtattggggatggccagcc----------cccctcaggagacacctcccaacc-------cctcag Sorex_coronatus gtgagtggggaggcttcggag-------------------------------------ggcaggaccc---------------ggcctctctcagggtactgca---------tagttggggtctggactcagtggggccgactgagtcttaggagcacatggtga--------------------tacccggggccatagccatggcacagtggggagggcacttgtggcatgcagccaacttgggttcgattcctggcattcctggatgcagagccaggagtaatccctaagcacctggggtgtggccccccaaacaaaa-----------------------agacacaaaagtgactgcgcacctgcagctgtcacatctgcacccccgccaggcgacagagctaacttgccc------------------agggagcgagcctgtggag-----------gggtgtctgtgccccaccRga------------agccactggagSgggagggaaccatggtcttggggtaggccagcc----------ccacttaggagatacctcccaacc-------cctcag Crocidura_russula gtg---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------agtttgggaccgcagcgacggcacagtggaaagggcac---tcatttctcacctagcccacccagtatcctgtgattcctgagcacagagctaggagttaacccttagctttactagaagtggcccccaaatacaa-----------------------agaaaaagagggagctgaatgcaggaagccatggagacagcccagcttgtgtccttcagcccccactttccc-------ctgagcacaaagacaggcaagatcatggac--tttccctggactcctctgtgggtgttcaga-------agttcagtgactaaagagggaggaattctagatattgggggctgccaacc----------cccctca-gaaatgcctcctgaccccgtcttccttag ; END; BEGIN CHARACTERS; TITLE SLA_intron_2; LINK TAXA = Taxa; DIMENSIONS NCHAR=813; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Bos_taurus gtgagtagctttccaaaacttctatgatgccc------gaagaactcgacgctggtgggagttgttagattttctctatggttgtccagttccccatgggccctggtcctgttgtgagctgagaacgttggcccaaacagcgggcctccaggcttaacctcctgactgctgctggtgctctaaaactttccctggctcccagttgcccaatggataaaactgaaatttcttaacttggcttttgagaccctttacgatccagcttctatttcttatgttggcctcatctccccccacaagggcaaggttgaggttatacattaatgcagactcagg-aagaggactcaggaatctgggggaacttctgatgataaagaaaagtattgccttctgacctgttgtctctttagatttgaaaaaggctgtagaagacat-aggggctctgagccccttttatttagatcctcactgatgtagacatgtgaaa----cttggttacatctcagggtctaattcagcagagtaaacctttatttttaaaaagcctccaaccatagctagaaacatcagctgctgatccctgaaaggtggctattgccagcacatgggaagactttctgtttagatcaaaatggggggatatcaaaaactaattttcgtaggaagaagtctagttaatgtggccaaggacagaccttaaaaaaggaacatcccaacacacgtgggattaaatctggttattctgttcattcattaaatcac-tcaccacttccccagtcactcttttctatttgttcttatccttctag Canis_familiaris gtgagtggttttccaaatgtttcataatccctaaaatgggtgaactcgatttaagcaggaatcgtcagattttagcaatagttgtccaactccactcgggccctggtccaattatgaggtgagaaatttaacccgtacagcagatccttgtgcttaa--accttaataccgccagtgctctaaaaccttcagtggctccatgttgcctggaggattaaatttaaattccttaacttgacttttgaggccctttttcgtccagcttctgcttctcatgttggtctcaccttccatc----------------cttcctagaccagtgcagtatcaggcaggaggacccaggggtctgagaaagcttctgatgagaaaaaaaagcattgccttccatcctgttgtctctcctgactcaaaatgggctatggaacaaatagagggctctaagcttcctttatttaggttctcattgatacagaca----gaactatcttggttatattgtagggtgtaattctgcgtagtgaacatttatttttaaaaagcctctaattct-----gatccatcagctgcggatccccaaaaaatgggtagtgccagcatgtgggaatggctcctgcttaacccgggatgag-ggatattaaaaaccaatttgcatatggaga---------aatgtggtcactggtgggttttaaaaaagaaacagccttacgtgcccgaagttaaatctgattactctg----ttcactcactcgctttgccactcacccatccaccctttcctatctgttcttgttcttccag Felis_catus gtgagtggctttccaaatgtttcacaatccctaaagggggggagcgctatctgaatggggatcattggatcttagctatagttgtccagttccacttgggccctgctccaatcataaggtgaagaaattggcccacacagaagatcttagcgcttaa--tccttaatgctgccagcgctctaaaaccttcaatggctccccattgcctggtggataaaattcaaattccttaacgtggcttttgagaccctttgtgatccagcgtctgtttctcacattggtctcatctcccacc----atgcagcattggtattatagactggtgcagttccagacaggaggacccagggttctaagaaaatgtctgatgataaaagaaagtactgactcccatcctgttgcctctcctgactcaaaatgggccacagaacaaatagggggctctaaaacccttttatttagattctcattgacacagacaaactaaactatcttggttctatctcagggtataattctacatagtaaagtt---atttttaaaagcctccaattct-----ggcagatcacctgtgggtccccaaaagatggctagtgccaaagcatgagacgcattcctggttagcttgtaataag-ggatattaaaaactgatttccctatggagaattgaggtcaacacgatcaacaatgggtcttaaaaaagaaacggccctacgtgccccaggttcaatctggttacccca----ctcattcctttgctttgcaactcacctgtccaccctttcctgtctgttcttgttcttacag Tursiops_truncatus --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Equus_caballus gtgagtagctttccaaaacttttataattgcccaaaaggatgaactctatgtcggtgggagtcatcagattttagctacaactgtccaattccatgctggctctggtctgattgtgaggtgagaaatttggcccatacggcaggccttcaagcttaacctcctcaatgctgccagtggtctaaaaccttcagtggctccccattgcctgataggtaagatttaaattccttaag-ttggttttgacacccattatgatccaacttttgcttctcatattgacttcatctcccaccatacatgcagtgttgatattatataccagtgcagacttgggaaggaggacccagggttctgaagaaacttctgctgataaaaaaaagtattgtcttctatcctgttgtctct-ctggtttgaaacaggctatag-agaaat-agcagctctaagcccctttcatatagatccttattgatataggcacgtgaaactagcttggttctcttgcagagtagaaatcagtgtattaaacattta-ttttaaaaagtctccaatggtagctggaaacataggctgctgatctctgaaaggggcctattgccagcccatgagaagatttcctggttagcttggaatggg-ggatattaaaaactaattttcatatggagaattcgggac-atggggccaatgataggtgtttaaaaaggaacgtcccgaggtgccccagattaaatctgatgtctctgttcattcactcatttgctttgccacttacctc-tctccctgtcctctctgttcttcctcttacag Pteropus_vampyrus gtgagtagctttccacaacgtttacaatccccacaaaggatgaacttggtttgggtggaaagagttagattttagctatagctgtccagttccacatgggccctggtcctattgagaggtgagaagtttggcccagacag-aggcctaaatgcttgacttccttaatgctgccagcactctaaaacctcctgtggctccccaatgcctactggatgaaagttaaattccttaa--tggcttttgagaccctttatgatccaggctctgcttctcacgttggcctcatctcccagcacacatgcagtgctgatattatctaccagtgctagctcaggacggaggacacgagggtctggaaaaacttccgatgacaaaaaaaagtgtcgccttctatcctgttgtctctcctgattcaaaacaggctgtagaagagat-ggaggctctaagccccgtttatttaaaccctcgttgacagagacacactaaagtatcttggttatatcgcaggatgtgagtcagtatagtaaacatttatttttaaaaagcttccggttgtagttagaaacaccagctgctggtcccagaaaggtggctatcgccagcatgtggggagattctctgcttagcttgaagcgggaggatattaaaaactaattttcataggaagaatttgggtcaacgtagccaatgacagattttaaaaactaag-gtccctatgtgccct-ggttaaatctgattactctgttcatgcattcattcgctttgccgtttacccatctacgctttcctgccctctcttttcct-acag Myotis_lucifugus gtgagtggctttcaaacctttacacagcccccaagaaggatgaactcgat-tggggggccgtggttaggctccagctgtagctgtgcaattccctacgggccctgatcccctagtgaagtgagccg-ttggcccacacagaagaccttcatgcttcacccgcttcatgctgccggtgctctcaaacctccagtggctccccattgcctcctggagaacaatgtaaactcccag--tggcttctgaggtctttta------------------tcgtattggtctcagctcgccccacacgggcgctgttgataacatatgcgagtgcaggcccaggaaggaggacccagggg-ctggggaaacttctgatgaatgagcccagtattgccttctatcctgttgtctctgctggtttgaaatagtctccagaacagggatgggg-----aaccctttttatttataacatcatttgtatcaacttaagaaactag---------cctgctgtatttggtcaaacatttcattaactcagatttctcaggcctcctaccctagtcaggcac----gcccttacttgcaaacagcctccaattgtggatccgtgggaagatttcctaattagcttggcgtgtgggggtgtgaaaaactaattttcatatggagaatttgggtca--atggccagtgaaggatcttaaagaacaag-gtctccacgggccccgggttaaatccgacgtctctgttcattcatgcgtttgtttggacaattagctt-tgacccttccctccctgctcttgttcctgcag Ailuropoda_melanoleuca gtgagtggctttccaaatgtttcacaatccctaaaaagggtgaacttgatttgagtgggaatcattagattttagctatagttgtccaactccactcaggccctggtcctattgtgaggtgagatatttggcccatacagcggatcctagtgcttaa--tccttaatactgccagtgctctaaaaccttcagtggctgcccattgcctggtgggttaaatttaaattcctt-acttggcttttgagaccctttatggtccaactactgcttcttacattggtctcatcttccacc---cgtgcagtgctgatattatagaccagcacagtggcaggcaggaggacccgggggtctgagaaag--tctgatgataaaagaaagtattgccttccatcctgctgtccttcctgact-aaaatgggctatagaacaaatagggggctctaagctctttttatttagattctcattgacacagaca-----agctatcttggttatactgcagggtgtaattctgcatagtaaacatttgtttttaaaaggcccccaattct-----ggcacatctgctgtggatccccaaaagatggctagtgccagtacacgggaagggttcctg-------------------------------------------------------------------------------------------ccttatgtgccccagataaaatctgattcctctg----ttcctgcattcactttgccactcacacatccaccctctctcgtctgtccttgttcttccag Homo_sapiens gtgagtagctctccaaaacttgtgcaatcttcaagcaggataaacttggtttgggagaaaagtatttgattttagctagagtggtctagttccacatgagtcctggtcctattatgaggtgagaaatttgacccatactgcaacctt----------cctctttaatgtggccagtgctctagaaccttccatagctccccactgcctggtagatcaaatttaaattccttaacttggcttttgagatcctttatgatccagcctc---ttctcatattcttcttatctcccaccacatgtgcagtgttgatgttatgtaggaatgaagacc-gggaaggcagcccccagggtctggaaatccttcggatgagaaaacaaaaatttgccttctctcctcttacctctgctgattcaatatgggctatagaacatgacagaagttctaagccccttttatttagatcttcactgattcagatatatgaaactattttggctatactgcagagcataaatcaacatagtaaacatttatttttaaaaagcctccaac---agttgggaacattagctgctaatccctgaaaagcagctatttctagcacatgggagggtttaccagttggcttgcaatggagggctattaaaaagaaattttcagatgacgaatatgggttaacgtggccagtgacagatcttaaaagaggaatgttccaaactgtcctgggttaaatctgattactctgttcattcatcctttggttttgctatttacctatctctgtgttcttctctgttcttgttcttacag Macaca_mulatta gtgagtagctctccaaaacttgtgcaatcttcaaataggataaacttggtttgggtgaaaagtatttgattttagctagactggtgtaggtccacatgagtcctggtcccattacgaggtgagaaatatgacccatactgcaaccct----------cctctttaatgtggccagtgctctagaaccttccacagctctccactgcctggtagatcaaatttaaattccttaacttgacttttgagatcttttatgatccaacctc---ttctcatattcttcttatctcccaccacatgtgcagtgttgatgctatgtaggaatgaagact-gggaaggcag-ccccggggcctggaaatcctttggatgagaaataaaagatttgccttctctcctcttacctctgctgattcaatatgggctatagaacacgacaggagttctgagccccttttatttagatcttcattgatgcagataattgaaactattttggttatactgcagagtataaatcaatatagtaaagatttatttttaaaaagcctccaac---agttgggaacattaactgctaaaccctgaaaagcagctatttcgagcacacgggagggtttcccagttggcttgcaatggagggctattaaaaaggaattttcagatgatggatttgggttaacgtggccagtgacagatcttaaaagaggaatgttccaacctgtcctgggtcaaatctgattactctgttcattcatcctttggttttgctatttacttatctctgtg---ttctctgttcttgttctcacag Erinaceus_europaeus gtgagtaatgttctaaaactttcgcaacccccaaaggctacaaacttcatttaggcgggaattggtagatcctaggcgtctctctccaattctacaaggtcc----tgtgatgatgaggtgtggcatttggtccatgtataaggccttaatgtctaactttcttaataccaccgaggcaacaatgcctttagtgatactttactctctgagggataaaactgaaatttcctgacatggtttttgagacctgttctattccaacttctgcttcttgtgttgccctcagcaccctc-atttactcaatgttgata-tacctatcaacacaatcttgggaagaaagac-cgggtatctaataa----------------ggaaattactgtttttcctttttttttttctcctcactctaaataactca----ggacataagaggcgtctaaccccacttaattacgtcc---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Neomys_fodiens gtgagtaaatgtttaaacccaac--------------------------------------------------------------------------------------------------------------cat----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tctcc------------------------------------------------------------------------------------ccctgccctgccaatggggtctaaattgggtagtaaagatttaatttgtttaaaaatctgattgt----gaaaacactagtggtgacttcccaaca---------------tgtgtgaagagacccccaaatattttggaatgggtggaggatgtactacaaagttacatat-----------gtcactaagaccaatgataggttttaattaaaaagtgtcccaacttgccctgatttaaatMtgatcactctgttcattcattcattagctattccttttaattttatgtttaccctttcttctcttttttattccag Sorex_coronatus --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Crocidura_russula --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; END; BEGIN CHARACTERS; TITLE TRAIP_intron_8; LINK TAXA = Taxa; DIMENSIONS NCHAR=617; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Bos_taurus gtaacttaatggggagccgagcgccaggggagaggtggctgtccttctgtcatgcgtgtgagtctctcctaggccaggccctg---------------------------gggctgtgggatgactc-------ctggcttctggtcctcactaggcactgactctggctgtgtggcttgtctgcttagggtggcaggtcatgcaactgcgccccaacagctgcacacttctgttcccc---------------------atacctctcagctggctggggcacacaggtcccaaatgtgatggcttcagaggcctgtttttgttccaggcctagagtaggaggctcttgaaacctgaatcagtcaacacagctgcttttatttctgggcatggtgcatgtcagggtag--ggatgtagggaggagc-------cctggactgctccagatgaacactgccagactaaggtccagccccgtggagctcgggtcttc-cctgtgtcccccgctcctcctgggtc-tgggctcccatgagc-----tagggtagcagcaggcagggacagggcatacagccacccctgtgttcgtccttcgctccttacactttcttgc Canis_familiaris gtaa--cagtg-ggggcagaagg-ggagggagaggtggct-tccttttgtcctgctcgttcctgtctcccgagcaaagccatggggcctgat-gtgcaacagactccatagggctgtggggtgattcagagagactg----------cttactgggccttggctctggctttgtggcttgtccacttagggtggcaggtcatgcaagtaccccccaatgtgtgcatgcttatgctcccttctattcttcctggctcctgggtaactctcaactggctgaagagcacaagtcccaaatgtgacaatgtccaaggcctgtttttgtacctggcccagagtaggaggtacttgggatccagttcagtcagcacagctg-ttttatttctgggcctggtgcatccatgggctgtcagacatagaactcagccctagttcctaggcagctccagatgggcattgacag-----------gccccacaaagccagggcctccccatgtgtcctcagactcttctggacactgggttcccatgaacatgcactgagt----------------agagcacgtggccacctgctggcttgtcctttactgcccatactttcttat Felis_catus gtaa--cagtggggagcagaagatgaggggagaggtggctgtccttttgtcatgctcgttcctgtctcctgagcaaagccatggggctggatggcacaacggactccatggggctattgggtgactcacagagactggttactgggccttactgggctctggctctggctctgtggctggcccaccaaggccggcagttcacacagggctcccccagtatgcgcacggttacactcccctctattcttcctggttcctaggcacctcttagctggctggagagcacagatctctaaggtgccagtgtccgaggcctatttttgtaccaggcccaaagtaggaggtacttggaacctggttcagtcagcacagctg-ttttatttctgggcccagtgcatcggtggactattgggcatagaacgaagcccttgttcctgggcagctccagatggacattgacggattaaagccctgccccacaaggccagagtctctccttgtgtcctcagactcttctggaccctgggctcctatgagcatgcactaggtagcagcaggtggaggcagagcacagggccacctgttggcttgtcctttactccctacactttcttac Tursiops_truncatus gtaattcagtggggagctgacagtgaggggagaggtggctgtccttttgtcatgctcatgtgtgtctcctaagcaaggccatg---------------------------gggctgttggatgactcacagaggctggtttctgatccttactgggcattgactctggctacatggcttgtccagttagggtggtagatcaggcaggtaccccccagcctctgcacacttctgttcctctctgctctt--------ctgggtacctctcagctggctggagcacacaggtcccaaatgtgacagctgcaggtgcctgtttttgttccaggcccagagtatgaggatcttggaacctgatgcagtcagcacagcagtttttatttctgggcatggtgcatccatgggcaa--gggtgtaggaagtagcccttgctcctgggcagctccagatggacattgccggactaaggtccagccccatggagctagggtctccctcccgtgctcccagctcttctggaccccgggctaccacgagc-----tggtgtagcagcaggtgcgggcagggcacatgggcacccctgggttcatccttttctccttacactttcttgt Equus_caballus gtaacttagcg-ggagcagaaggtcaggggacaggtggctgtccttttgtcatgctcattcatgtctcctgagcaaggctgtggggcctgatggtgcagctgactcaatggggctgttggatgacacacagggactggttattggtccttactgggctttggctctggctatgttgcttgtccacttagagtgacagatcaggctggtacccctcaacatgtgcacac-tatgttcccctctgctcttcctggcttctgggtacctctcagctgaccagagagcacaggtcccaaat-tgacagcttcagaggcctgtttttgtgccaggcccagagtagagggctcttgaaacctggttcaattagcacagctgcttttatttctgggcatggtgtacccatggtatgcagagtataggaagcagctcccactcctgggcagctccag-tgaacgttg-----------------ctcacagagttagggtttcctcccatatccccagactcttctggaccctgggctaccatgagcatgcactgggtagttgtaggcgggggcagggcacatggccacccattggctggtcccttactccctatactttcttgt Pteropus_vampyrus gtaacttagtgaagagcagagggggaagggaggtgtggctgtccttttttcatgctcattcatgtctcctgagcaaggccctggcgcctgatgttgccactgactccatggggctgttgggtaatgcacagaaactggttacaggtcctcactgggcactggctctggctaagtggcttgtccacttagggtggcaggtcacgccggtatctcccaactcgtgcacgcttacgttcccctctgctcttcttggctcctggccacctctcagctggctggagagca-agctcccaaatgggacagcttcagaggtctgtgttcgtaccgggcccagagcaggaagctcctggaacctgatacggtcagcttggctgcttttatttccgggcttggtgcacccatgggctacaggttgtaggaagcagcccttgttcctgcgcagctccagacggacatttccaaactaaagcccagccccacagagctagtgtcttcccccgtactcccacactcttctggaccctggtctaccgtgagcacgcactgggtagcagagggcaggggcagggcacatggccgcccctt-gctcatcctctactccctacaccttcttat Myotis_lucifugus gtac--ctgtggggagcagagggtgagggagatg--ggccgtcctgctttcacgtgcggtcacggctcctgagcaaggcccag--gcctgagggtgcagctgaccc--aggggctgtcgcctggctcacagagaccagtcactggtcctcac-gggcgttggctcaggctgtgtggcttgtccagttagggtggcgagtcacgcaggtgtctcctggc--gtgcagcctgatg----cccctgctcctcccggatcctg-----ccctcagctggcgggagggcacaggtcccaaatgtgccaccttcgagg-------tctgtaccaggccccaagcatacggctcttggaacccgattcggtcagcacagctg-ctttactcctgggcctggtgcatccacgggccgcagggcatagg------------------ggcagccc----------------------------agcccatagagctagggtctcc-ctgggggccccccacactcctgggccccggtctaccctgagcaggc---tggccgcagcaggt-ggggcagagcacgcggccacccttgg------ctcattccccctccacttgcctgc Ailuropoda_melanoleuca g-----taacg-ggagcaaaaggtgaggggagaggtggctatccttttgtcatgctcattgctgtctcctgagcaaagccatggggcctcatggtgcgacagactccacggggccg-tgggtgattcacagagactggttcca----------gggccttggctctggctctgtggcttgtccacttagggtggcaggtcacgcggctacccgccaatacgtgcatacttaca---acttctattctccctggctcctgggcacctctcagtgggctggatagcacagagcccaagtgtgactgtgtcaggggtctgctttagtcccaggcccagagcaggaggtcctcggaaccccgttcagtcagcatagctg-ctttatctctg---cccatgcacccgtgggctgtcaggtgtagagtgcaaccctagttcctgggcagctccggatgggtgtggacag-----------gccccacaaagccagggtctccccatgtgtcctcagattcctctggaccctgggctcccgtgagcacgcgctgggtagcagcaggtgggggcagagcacacggctgcctgctggcctgtcctttcctccctatactttcttgt Homo_sapiens gtaacttagcagtgaacaga-ggttgaaggagaagtggctctccttttgtcatgttcactctggtctcctgagcaaggccatgggacctgatggcacagctgactccctggggcagctggaggacttacagaaatttgttaccagtccttactgggcattgg-cctgaatatgtggcttgtccactaggggtgacagatcacagaggtatcccccaacatgtggacactgatgctcccctctgctcttcctggctcctgggtacctctcagctggctggagagcacaggcctcaaatgtgacagcatcagaggcctatttttgtaccacatctggagtagaaggctcctggaacctgattcggtcagcacagctgcttttacttct-ggcatggtgcatccacaggctgcaggatgtaggaagcagcctttgcttctaggcagctccggatgtgcattgccagactgaggcctagcctcagagagctgggatctctgcccatatctctagtctcttc-------tgggctaccttgatcactccctggggagcagcaggagggggcagggcacaaggctaccacttggcttgtctttcattccctacactttcttat Macaca_mulatta gtaacttagcagtgaacacg-ggttgaaggagaggcggctctccttttgtcatgctcactctggtctcctgagcaaggccatgggacctgatggcacagctgactccctggggcagctggatgacttatagagatttgttaccagtccttactgggcattgg-tctgaatatgtgacttgtccagtagggatgacagatcacagaggtgtctgccaacatgtggacactcatgctcccctctgctcttcccagctcctgggtacctctcagctggctggagagcacaggccccaaatgtgacagcgtcaggggcctatttttgcaccatgtctggagtaggaggctcctggaacctcattcggtcagcatagctgcttttacttct-ggcatggtgtagccacaggctgcaggatataggaagcagcctttgcttctgggcagctccggatgtgcattgccagactgaggcctagcctcagagagctgggatctcttcccatacccctagtctcttctagactctaggctaccttgatcactcactggggagcagcaggagggggcagggaacaaggctaacacttggcttgtccttcactccctacactttcttat Erinaceus_europaeus gtaatgtgggggcgagtggaaggcaaaggcagaagggactgtcttgaggtcgtgctaagtcatggcgcgccagccttgcttcgagtgctgctgccttctctcatgaagtggtgctgctgaagggacaagagaaactagttgtcagtcctcactgggcatttattctgactcagtggcttgtcctcttagagtggtatatcgtggtgacacacccccacaaatgcaagcttattctcccctctgcttttcctggcttctaggcacctcatttct--ctagagagtacgggtcgctaatgtgacagcttcagaggctgccacctcc-----------------gggctcttggtacctgactcattcagtacaactt-ttttatttctcggcat-gtacatata--------------------------------cttctagagctccagaaagacattactagactaatg-ccagttacagagaactaggatttctcctcatgtgcccaggcttttctggatcctgtgctgtcctggccatgcagtgagcagtagtgggtgggaccagggcacatggcagctccatggttcgtccatgactccctactctttcctaa Neomys_fodiens gtaacttagag-------------gggggcagagatgcctat-tttttgtcatgtacact-atgtctcctaagcaaggccttagaaa-tggtggtacagctggttccatggggctgccgggtgattc----agtctggttactggtgcttacagggcattcaccctaaccagatggcttatatgtcc-------caacacatgcagatttcctctgctctctgc----------tcccctgtgctgctcctggctcctagacatctggctg-----gggagagcacaggttccaaatgtgatgatgttagaggccgggtttcgt-------ccagcagaggaggccattggaacctgattcagcctgcacagctgctttcatttctggccat-gtatatccatgggctgcagagtgcaggaagtagcccttgctcctgggaagctccatagggacactgccagctgaaagccccattgtggagagttcagcc--------------------------------tgggccgtcctgact--------------ggatggcaggagtagagcccagggggacctggaggcgcatcctttcattcctacccatttttat Sorex_coronatus gtaacagagag-gaggaggggaaaagggcgggagatgactattcttttgtcgtgtacagttacgtctcctaagcaaggccttagaaacggatggtgcagctggttccac-gggctgtcgggtgatttggagagactggctactggtgcttccagggcattcaccctggctagacgcatgtt-------------caacacatacataggtcctctgctctgtgc-----------tccctttacgcctcctgacccctagacccctggctg-----gggagagcacaggatccaaatgtgatgactttagaggcctgttcttctactaggtccagcagaggaggcccttgggacctgagtcagtctgcacagctgcttttatttctgggcat-gtgtatccgtggg----------------------cttgctcctgggaagctccagaggagtactgccagatgagagccctgtcacatagagctaggc-----ccctgagctgccggactcttgtgggagctgttttgttttgttt--------------ggggggggggg?gcgtgcgcgcgcgcgcgcgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt Crocidura_russula ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; END; BEGIN TREES; Title Imported_trees; LINK Taxa = Taxa; TRANSLATE 1 Bos_taurus, 2 Tursiops_truncatus, 3 Equus_caballus, 4 Felis_catus, 5 Canis_familiaris, 6 Ailuropoda_melanoleuca, 7 Myotis_lucifugus, 8 Pteropus_vampyrus, 9 Neomys_fodiens, 10 Sorex_coronatus, 11 Crocidura_russula, 12 Erinaceus_europaeus, 13 Macaca_mulatta, 14 Homo_sapiens; TREE 'Introns Bayesian tree' = (((((1:53.861295489177465,2:53.861295489177465):26.384264410056844,(3:79.6466806932503,(4:44.89895497624211,(5:38.213758464007526,6:38.213758464007526):6.685196512234583):34.747725717008194):0.5988792059840051):0.8065294489363168,(7:73.79290691863862,8:73.79290691863862):7.259182429532004):5.910895444141033,(((9:38.156821095835134,10:38.156821095835134):14.56386208679129,11:52.72068318262642):30.13080160800991,12:82.85148479063633):4.111500001675324):5.268724950041133,(13:24.21751321404129,14:24.21751321404129):68.0141965283115); END;