#NEXUS

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=24;
	TAXLABELS
		Chiastocheta_lophota_AMB29mi Chiastocheta_lophota_BAY5mi Chiastocheta_lophota_CDV35mi Chiastocheta_lophota_CHA17mt Chiastocheta_lophota_CHA25fs Chiastocheta_lophota_CHA42mi Chiastocheta_lophota_DON16mi Chiastocheta_lophota_DON17mi Chiastocheta_lophota_EPO24mi Chiastocheta_lophota_GAL12fd Chiastocheta_lophota_GAL35mi Chiastocheta_lophota_HT17mi Chiastocheta_lophota_LOS15fd Chiastocheta_lophota_LOS18fs Chiastocheta_lophota_LOS20mi Chiastocheta_lophota_PIL34mi Chiastocheta_lophota_PIL35mi Chiastocheta_lophota_PYS11mi Chiastocheta_lophota_PYS12mi Chiastocheta_lophota_PYS43fs Chiastocheta_lophota_PYS8mi Chiastocheta_lophota_SED15_1ln Chiastocheta_lophota_SED2mi Chiastocheta_lophota_SUS10mi 
	;
END;

BEGIN CHARACTERS;
	TITLE  'Mitochondrial D-loop region';
	DIMENSIONS  NCHAR=279;
	FORMAT DATATYPE = DNA GAP = - MISSING = N;
	MATRIX
	Chiastocheta_lophota_AMB29mi    TATATTTTAGTGTATGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTT--ATAAAAA---TTTTTT----GTAATAATTGAGTTTCCTT----TGTAA---TTTTTT----AAAAAAAAATAATTGAATTT-CTTT-CTTTTTTTATAAAAATTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
	Chiastocheta_lophota_BAY5mi     TATATTTTAGTGTATGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTTT-ATAAAAA---TTTTTT----GTAATAATTGAGTTTCCTCC----TTAT-GTAATT-------AAAAAAAATAATTGAGTTTCCTTTGTAATTTTTTAAAAAAAAATAATTGAATTTCTTTCTTTTTTTAT-AAAAA-----
	Chiastocheta_lophota_CDV35mi    TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTTT-ATAAAAA---TTTTTT----GTAATAATTGAGTTTCCTTC---TGTAA---TT-------AAAAAAAAAATAATNGNGTTNCCTTTGNAATTTTTTAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
	Chiastocheta_lophota_CHA17mt    TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTTT-ATAAAAA---TTTTTT----GTAATAATTGAGTTTCCTTC---TGTAA---TT-------AAAAAAAAAANAATTGAGTTTCCTTTGTAATTTTTNAAAAAAAAANAATTGAATTTCTTCNTTTTTTN---ANAAAAA---
	Chiastocheta_lophota_CHA25fs    TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTTT-ATAAAAA---TTTTTT----GTAATAATTGAGTTTCCTTC---TGTAA---TT-------AAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
	Chiastocheta_lophota_CHA42mi    TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTTT-ATAAAAA---TTTTTT----GTAATAATTGAGTTTCCTTC---TGTAA---TT-------AAAAAAAAAATAATTGAGTTTCCTTTGTAATTTTTTAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
	Chiastocheta_lophota_DON16mi    TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTT----AAAAA---TTTTTTTT--GTAATAATTGAGTTTCCTCC----TTTT---TTTTT-----AAAAAAAAATAATTAAGTTTCCTTTGTAATTTTT-AAAAAAAAATAATTAAGTTTCCTTTGTAATTTTT-AAAAAAAAAA
	Chiastocheta_lophota_DON17mi    TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTT-----AAAAA---TTTTTTTT--GTAATAATTGAGTTTCCTCC----TTAA---TTTTT-----AAAAAAAAATAATTGAGTTTCCTTTGTAATTTTTAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
	Chiastocheta_lophota_EPO24mi    TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTT--ATAAAAA---TTTTTT----GTAATAATTGAGTTTCCTTC---TGTAA---TT-------AAAAAAAAAANAATTAAGTTTCCTTTGTAATTTTTTAAAAAAAAANAATTGAATTTCTTCCTTTTTTT---ANAAAAA---
	Chiastocheta_lophota_GAL12fd    TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTTTTATAAAAA---TTTTTT----GTAATAATTGAGTTTCCTTC---TGTAA---TT-------AAAAAAAAAATAATTGAGTTTCCTTTGNAATTTTTAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
	Chiastocheta_lophota_GAL35mi    TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTTTNATAAAAA---TTTTTT----GTAATAATTGAGTTTCCTTC---TGTAA---TT------AAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
	Chiastocheta_lophota_HT17mi     TATATTTTAGTGTATGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTTT-ATAAAAA---TTTTTT----GTAATAATTGAGTTTCCTTC---TGTAA---TT-------AAAAAAAAAANAANNGANTTNCCTTNGTAATTTTTTAAAAAAAANTAATTGAATTNNNTTCTTTTTTNNNNNNNNNNNNNN
	Chiastocheta_lophota_LOS15fd    TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTT-----AAAAA---TTTTTTTT--GTAATAATTGAGTTTCCTCC----TTAA---TTTTT-----AAAAAAAAATAATTAAGTTTCCTTTGTAATTTTTAAAAAAAAAANAATTGAATTTCCNCCTTTTTTT---AAAAA-----
	Chiastocheta_lophota_LOS18fs    TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATAATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTT----AAAAA---TTTTTTTT--GTAATAATTGAGTTTCCTCC----TTAA---TTTTT-----AAAAAAAAATAATTGAGTTTCCTTTGTAATTTTTAAAAAAAAAATAATTGAATTTCCNCCTTTTTTT---AAAANN----
	Chiastocheta_lophota_LOS20mi    TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATAATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTT----AAAAA---TTTTTTTT--GTAATAATTGAGTTTCCTCC----TTAA---TTTTT-----AAAAAAAAATAATTGAGTTTCCTTTGTAATTTTTAAAAAAAAAANAATTGAATTTCCNCCTTTTTTT---AAAAA-----
	Chiastocheta_lophota_PIL34mi    TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATNTTATNACATGATTNACCCTNNCAAGGTAATCCTTTTTATCNGGNNATTCATTTTT-----AAAAA---TTTTTTTT--GTAATAATTGAGNTTCCTCC----TTAA---TTTTT-------AAAANAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
	Chiastocheta_lophota_PIL35mi    TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTTT---AAAA----TTTTTTTT--GTAATAATTGAGTTTCCTCC----TTAA---TTTTT-----AAAAAAAAATAATTAAGTTTCCTTTGTAATTTTTAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
	Chiastocheta_lophota_PYS11mi    TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTTT-ATAAAAA---TTTTTT----GTAATAATTGAGTTTCCTTC---TGTAA---TT--------AAAAAAAAATAATTGAGTTTCCTTTGTAATTTTTAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
	Chiastocheta_lophota_PYS12mi    TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGA-----------------------------------------------------------------------------------------------------------AAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
	Chiastocheta_lophota_PYS43fs    TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTTT-ATAAAAA---TTTTTT----GTAATAATTGAGTTTCCTTC---TGTAA---TT--------AAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
	Chiastocheta_lophota_PYS8mi     TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTT--ATAAAAA---TTTTTT----GTAATAATTGAGTTTCCTTC---TGTAA---TT-------AAAAAAAAAANAATTGAGTTTCCTTTGTAATTTTTTAAAAAAAAANAATTGAATTNCTNCCTTTTTTT---ANAAAANNNN
	Chiastocheta_lophota_SED15_1ln  TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTT--ATAAAAA---TTTTTT----GTAATAATTGAGTTTCCTTC---TGTAA---TT----AAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
	Chiastocheta_lophota_SED2mi     TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTT--ATAAAAA---TTTTTT----GTAATAATTGAGTTTCCTTC---TGTAA---TT-------AAAAAAAAAATAATTAAGTTTCCTTTGTAATTTTTTAAAAAAAAANAATTGAATTTCTTCCTTTTTTT---ANAAAAANNN
	Chiastocheta_lophota_SUS10mi    TATATTTTAGTGTACGATGCACAAAAGTTTTTGATACTTTTAGAAATAGTTTAATTCTATTAAATATAATGAATGTAATATTATTACATGATTTACCCTATCAAGGTAATCCTTTTTATCAGGCAATTCATTTTTTT-ATAAAAA---TTTTTT----GTAATAATTGAGTTTCCTTC---TGTAA---TT---------AAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
;
END;

BEGIN TREES;
	Title 'Mitochondrial D-loop region';
	LINK Taxa = Taxa;
	TRANSLATE
		1 Chiastocheta_lophota_AMB29mi,
		2 Chiastocheta_lophota_BAY5mi,
		3 Chiastocheta_lophota_CDV35mi,
		4 Chiastocheta_lophota_CHA17mt,
		5 Chiastocheta_lophota_CHA25fs,
		6 Chiastocheta_lophota_CHA42mi,
		7 Chiastocheta_lophota_DON16mi,
		8 Chiastocheta_lophota_DON17mi,
		9 Chiastocheta_lophota_EPO24mi,
		10 Chiastocheta_lophota_GAL12fd,
		11 Chiastocheta_lophota_GAL35mi,
		12 Chiastocheta_lophota_HT17mi,
		13 Chiastocheta_lophota_LOS15fd,
		14 Chiastocheta_lophota_LOS18fs,
		15 Chiastocheta_lophota_LOS20mi,
		16 Chiastocheta_lophota_PIL34mi,
		17 Chiastocheta_lophota_PIL35mi,
		18 Chiastocheta_lophota_PYS11mi,
		19 Chiastocheta_lophota_PYS12mi,
		20 Chiastocheta_lophota_PYS43fs,
		21 Chiastocheta_lophota_PYS8mi,
		22 Chiastocheta_lophota_SED15_1ln,
		23 Chiastocheta_lophota_SED2mi,
		24 Chiastocheta_lophota_SUS10mi;
	TREE 'D-loop tree' = (1:0.2832523,((2:0.02893701,12:0.01337185):1.9110007E-7,((14:1.0E-8,15:1.0E-8):0.00446397,(16:1.0E-8,(19:1.0E-8,(13:0.00464315,(8:1.0E-8,(7:0.11179525,(9:1.0E-8,(21:0.00489585,(23:1.0E-8,(22:1.0E-8,(17:0.03524598,(24:1.0E-8,(20:1.0E-8,(18:0.00724925,(4:1.0E-8,(5:1.0E-8,(3:1.0E-8,(6:1.0E-8,(10:1.0E-8,11:1.0E-8):0.00729789):1.0E-8):1.2420167E-7):2.5789739E-8):1.0E-8):0.0):1.2702276E-7):0.00502443):0.0):1.3055449E-7):1.0E-8):1.0E-8):0.03161793):5.7830754E-8):1.0E-8):1.0E-8):1.0E-8):1.0E-8):0.02299691):0.2832523);
END;