#NEXUS
[saved by seaview on Fri Jun 27 16:40:02 2014]
BEGIN DATA;
	Title 'Alignment from "E4b-Lhx-80-final.nexus"';
  DIMENSIONS NTAX=80 NCHAR=201;
  FORMAT DATATYPE=PROTEIN
  GAP=-
  ;
MATRIX
[1] 'Danio rerio Lmx1b2'
CEGCHRPI--SDRFLL--RMN-DSSWHEECL-QCSVCQQLLTMS---CYSRDHKLYCKHD
YQQLFAT-K---CSGCLEKISPTELVMR-A-LES-VYHLSCFCCCVCERRLCKGDEFVLK
E-GQLLC-KTDYEREK---RR-PKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAET
GLSVRVVQVWFQNQRAKMKKL
[2] 'Mus musculus Lmx1a'
CEGCQRVI--SDRFLL--RLN-DSFWHEQCV-QCASCKEPLETT---CFYRDKKLYCKYH
YEKLFAV-K---CGGCFEAIAPNEFVMR-A-QKS-VYHLSCFCCCVCERQLQKGDEFVLK
E-GQLLC-KGDYEKERE--KR-PKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAET
GLSVRVVQVWFQNQRAKAQTN
[3] 'Lottia gigantea Lmx1'
CTGCQMSI--EDKFLL--KVM-DNSWHETCL-NCAMCQLPLSGS---CFVRDRKLYCRAD
YDKLFGT-K---CNGCLQSIPANELVMR-A-AGY-VYHLRCFMCMACGHQLQKGDEFVVK
E-GQLFC-RLDFEKEFS--K-GPKRPRTILNTSQRRKFKAAFELNPKPCRKVREALAAET
GLSVRVVQVWFQNQRAKVKKI
[4] 'Saccoglossus kowalevskii Lmx1'
CAGCQQPI--EDRFLM--RVM-ENSWHEQCL-QCSVCQSPLSRS---CYFKDRKLYCKGD
YEKLFGT-K---CNGCLQSITSNELVMR-A-LCN-VYHLRCFNCIICNQRLQKGDEFVVR
D-NQLFC-KVDYEKEYG--RKGPKRPRTILTTAQRRAFKQSFEVSQKPCRKVRESLAADT
GLSVRVVQVWFQNQRAKMKKI
[5] 'Nematostella vectensis Lmx1'
CTGCNEPI--EDRFLM--KVV-DEAWHESCL-QCCICRSQLSRS---CFSKDRKLYCRTD
YEKTFGH-R-----------------------TT-IWHLSFAVCTDN--VFEKSLCLS--
----LPCC-----------KKGPKRPRTILTSQQRKVFKSAFEISSKPCRKVREELSRET
GLSVRVVQVWFQNQRAKVQK-
[6] 'Acropora digitifera Lmx1'
---------------M--KVM-EEPWHENCL-QCCICRITLSRS---CFSKDRKLYCRND
YEKMYAT-K---CTGCKATIPANEFVMR-A-LGN-VYHLQCFVCAMCGQRLVKGQEFALK
D-NKLYC-KEDYGKLPT--KKGPKRPRTILTSQQRKIFKSAFEISSKPCRKVREELSRET
GLSVRVVQVWFQNQRAKIKKL
[7] 'Tribolium castaneum Lmx1a'
--MCCRPI--NDRFLL--RIM-DVSYHEHCV-QCCACGDRLHHT---CFVKDSKLYCRLD
YDRLFVK-K---CLACSERIAPEELVMR-A-SEN-IFHLRCFVCVVCGIRLQKGDLYVIK
Q-GQLFC-RIDYEKEVE--RRGPKRPRTILTTQQRRAFKASFEVSPKPCRKVREALAKDT
GLSVRIVQVWFQNQRAKMKKM
[8] 'Drosophila melanogaster Lmx1a'
CAHCCQPI--CDRYIM--RVV-ENSFHEGCL-KCTACSLHLVHS---CYAREGKLYCRVD
YERLYIRNH---CLGCGLKIAADELVMR-C-HEN-VFHLKCFACVVCGALLKKGEQYVVK
Q-GQLFC-RFDYEKEVE--RRGPKRPRTILNTQQRRAFKASFEVSPKPCRKVRENLAKDT
GLSLRIVQVWFQNQRAKVKKI
[9] 'Tribolium castaneum Lmx1b'
CEGCGQKI--HDRYLM--RVA-DASWHEHCL-TCSICGVQLAHS---CYTRNTKLYCKAD
YDRIFGV-K---CSRCGDRLLPHEMVMR-A-QQH-VFHLPCFVCVVCCQPLQKGEQFVLR
A-GQLFC-RQDFEKEMY--RRGPKRPRTILTSAQRRQFKASFEVSPKPCRKVREALAKET
GLSVRVVQVWFQNQRAKMKKI
[10] 'Drosophila melanogaster Lmx1b'
CEGCGQKI--HDRFLM--NVG-DANWHEQCL-ACCYCGMQLHHT---CYVRNSKLYCKMD
YDRLFGV-K---CSSCCHAILPQELVMRPI-PNF-VFHLPCFVCYACRLPLQKGEQFMLR
D-GQLFCYRHDLEKEMF--RRGPKRPRTILTSQQRKQFKASFDQSPKPCRKVREALAKDT
GLSVRVVQVWFQNQRAKMKKI
[11] 'Danio rerio Islet'
CVGCGNQI--HDQYIL--RVSPDLEWHAACL-KCAECNQYLDES-CTCFVRDGKTYCKRD
YIRLYGI-K---CAKCNIGFSKNDFVMRAR--SK-VYHIECFRCVACSRQLIPGDEFALR
E-DGLFC-RADHDVVER--PEKTTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMT
GLSPRVIRVWFQNKRCKDKKR
[12] 'Mus musculus Islet1'
CVGCGNQI--HDQYIL--RVSPDLEWHAACL-KCAECNQYLDES-CTCFVRDGKTYCKRD
YIRLYGI-K---CAKCSIGFSKNDFVMRAR--SK-VYHIECFRCVACSRQLIPGDEFALR
E-DGLFC-RADHDVVER--PEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMT
GLSPRVIRVWFQNKRCKDKKR
[13] 'Branchiostoma floridae Islet1'
CVGCGSHI--HDQYIL--RVAPDLEWHAACL-KCSDCNQYLDET-CTCFVREGKTYCKRC
YVRLFGT-K---CAKCSLGFTKNDFVMRAK--NK-IYHIDCFRCVACSRQLIPGDEFALR
E-DGLFC-KADHEVLER--GHKPTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMT
GLSPRVIRVWFQNKRCKDKKK
[14] 'Saccoglossus kowalevskii Islet1'
CVGCGNQI--QDQFIL--RVAPDLEWHASCL-KCTDCNQYLDET-CTCFVRDSKTYCKRC
YVRLFGT-K---CAKCNLGFSKNDFVMRAR--NK-IFHIDCFRCVACSRQLIPGDEFALR
D-DGLFC-KADHDVVER--HHKTTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLTEMT
NLSPRVIRVWFQNKRCKDKKR
[15] 'Nematostella vectensis Islet'
CVGCGSQI--HDQYIL--RVAPDLEWHASCL-KCADCHMYLDEK-CTCFVREGKTYCKRD
YVRLFGT-K---CAKCSLNFSKNDFVMRAR--NK-IYHIDCFRCVACSRQLVPGDEFALR
E-DGLFC-KADHEIVEK--TDRPTRVRTVLNEKQLHTLRTCYNANPRPDAMMKEQLVEMT
GLSPRVIRVWFQNKRCKDKKK
[16] 'Acropora digitifera Islet'
CVGCGSQI--QDQYIL--RVAPDLEWHAGCL-KCADCHTYLDET-CTCFVRDGKTYCKRD
YVRLFGT-K---CAKCSRSVTKNDFVMRAK--NQ-IYHIECFRCLACSRQLVPGDEYVLR
EPDGLFC-KEDNEIVER--SEKTTRVRTVLNEKQLHTLRTCYAANPRPDAMMKEQLVEMT
GLSPRVIRVWFQNKRCKDKKK
[17] 'Lottia gigantea Islet1'
CVGCGSNI--HDQFIL--RVAPDLEWHASCL-KCADCNQYLDET-CTCFVRDGKTYCKRD
YVRLFGT-K---CSKCSQGFSKSDFVMRAR--GQ-VFHIDCFRCVACSRQLIPGDEFALR
E-DGIFC-KDDHDVVEK--DHKTTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQMTEMT
GLSPRVIRVWFQNKRCKDKKR
[18] 'Ciona intestinalis Islet1'
CVGCGSPI--HDQYIL--RVAPNLEWHAGCL-KCADCGQYLDET-CTCFVRDGKTYCKRD
YTRLFGT-K---CNKCGLCFSKNDFVMRAR--DK-IYHIQCFKCVACSRQLIPGDEFALR
D-DGLFC-KADHEVATS--DAKTTRVRTVLNEKQLHTLRTCYAANCRPDALMKEQLTEMT
GLSSRVIRVWFQNKRCKDKKR
[19] 'Drosophila melanogaster Tailup'
CVGCGGQI--HDQYIL--RVAPDLEWHAACL-KCQECRQFLDES-CTCFVRDGKTYCKRD
YVRLFGT-K---CDKCGNSFSKNDFVMRAK--TK-IFHIECFRCSACARQLLPGDEFALR
DAGALYC-KEDHDVLEK--DGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMT
SLSPRVIRVWFQNKRCKDKKK
[20] 'Trichoplax adhaerens Islet'
CSGCGGKI--NDRYIL--QVAPDMQYHAACL-KCASCQQLLDEK-ETCFLRNGKPYCKSD
FKMLFHN-R---CTKCNRIFEPSEFIMRAK--GN-PYHIDCFRCHSCMRKLIPGDRYGVD
T-YILYC-KEHY--LNK--GMKGTRIRTVLNEKQLQTLRSYYASNPRPDSTVKEKLVELT
GLNPRVIRVWFQNKRCKDKKI
[21] 'Mnemiopsis leidyi Islet'
CAGCRCPI--TDQFIL--RVAPNLEWHASCL-KCDDCNKFLDEN-CTCFIREGKPYCKKD
FVR-FGA-K---CHRCDQGFSSNDFVMRVR--EN-IFHLSCFRCNMCSRQLVPGEEFALL
P-EGLIC-GTHIKQQHH--EQKTTRVRTVLNDRQLRILRTCYNNNPRPDALMKEQMTKLT
GLSARVIRVWFQNKRCKDKKK
[22] 'Branchiostoma floridae Lhx6/8'
CTGCGGPI--QDKFLL--KVGER-QWHVKCL-RCSVCQTPLGRH-TTCYTREADVFCKAD
YIRQFGT-K---CAKCCRNIQSNDWVRRAK--TH-VYHLACFACDACKRQLSTGEEFALH
D-GKVLC-KSHYLEAMD--GHRPKRVRTTFTEEQLRVLQANFNIDSNPDGQDLERIAQIT
GLSKRVTQVWFQNSRARQKKY
[23] 'Saccoglossus kowalevskii Lhx6/8'
CLGCTSPI--QDRYLL--KVGTR-SWHVRCL-RCCICQTGLGGQ-QSCFTKDDNIYCKMD
YIRQFGT-K---CSRCMRNIQSNDWVRKAK--NH-VYHLACFACDNCKRQLSTGEEFAMQ
E-NKVLC-KTHYLELLE--NPRTKRVRTTFTEEQLQVLQANFNVDSNPDGQDLERIAQIT
GLSKRVTQVWFQNSRARQKKH
[24] 'Nematostella vectensis Lhx6/8'
CVGCEAKI--VDRYLV--KVSGR-AWHTKCL-KCCLCSDELGRE-ATCYTKDGKIYCKAD
YARQFGT-K---CARCGRSIHANDWVRRAK--NC-VYHLACFACDNCKRQLSTGEEFALK
D-GHVLC-KLHYLEALD--RHKAKRVRTTFTEDQLQILQANFNIDSNPDGQDLERIAQLT
GLSKRVTQVWFQNSRARQKKY
[25] 'Acropora digitifera Lhx6/8'
CAGCKGRI--MDRYLV--KVSGK-AWHTSCL-KCCMCGLELGKE-ATCYTKEDRIYCKTD
YARQFGT-K---CARCGRSIHANDWVRRAR--SS-VYHLACFACDACKRQLSTGEEFALK
E-GHVLC-KLHYMESLD--CHKTKRVRTTFTEEQLQILQANFNVDSNPDGQDLERIAQLT
GLSKRVTQVWFQNSRARQKKY
[26] 'Tribolium castaneum Arrowhead'
CSACGEPI--SDKFLL--EVSGR-SWHARCL-RCCVCQLQLDRQ-PSCFIRDRAIYCKAD
YAKSFGA-K---CSVCSRGISSSDWVRKAR--DH-VYHLACFACAACHRQLSTGEEFALH
E-DRVLC-KAHYLETLD--KNKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQIT
GLSKRVTQVWFQNSRARQKKH
[27] 'Drosophila melanogaster Arrowhead'
CAACGEPI--SDRFFL--EVGGC-SWHAHCL-RCCMCMCPLDRQ-QSCFIRERQVYCKAD
YSKNFGA-K---CSKCCRGISASDWVRRAR--EL-VFHLACFACDQCGRQLSTGEQFALM
D-DRVLC-KAHYLETVE--KSKTKRVRTTFTEEQLQVLQANFQIDSNPDDQDLERIASVT
GLSKRVTQVWFQNSRARQKKH
[28] 'Hydra magnipapillata Lhx6/8b'
-------------------------------------------------MHSTEISCEGN
AN-LLKI-K---CSSCSRPIQLTDWIRRAK--QN-VYHLACFSCDICKRQLSTGEEFAFI
E-DSILC-KLHYVEHLE--ENKNKRVRTSFTDEQVLILQANFDLDANPDSNELERIAADV
SLPKRVTQVWFQNSRARQKKQ
[29] 'Cladonema pacificum Lhx6/8'
------------------------------------------------------------
--------K---CYSCQRAIQSTDWIRKAK--QN-VYHLACFACDICKRQLSTGEEFALL
E-NSILC-KLHYVNQLE--TGKHKRVRTSFSEEQVQVLQANFEIDANPDSAELERIASDV
SLPKRVTQVWFQNSRARQKKQ
[30] 'Lottia gigantea Lhx6/8'
CFGCGGMI--HDRYLL--RVNGC-SFHVDCL-RCSVCDCVLERQ-SSCFIKGDNIYCKVD
YTREYGA-K---CSKCQRHIQPNDWVRRAR--DN-VYHLACFACDSCKRQLSTGEEFALQ
D-DRVLC-KTHYIEVLE--KQKAKRVRTTFSEEQVQVLQANFNIDSNPDGQDLERIAQIT
GLSKRVTQVWFQNSRARQKKY
[31] 'Mus musculus Lhx8'
CSSCGLEI--VDKYLL--KVNDL-CWHVRCL-SCSVCRTSLGRH-TSCYIKDKDIFCKLD
YFRRYGT-R---CSRCGRHIHSTDWVRRAK--GN-VYHLACFACFSCKRQLSTGEEFALV
E-EKVLC-RVHFDCMLD--PKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERT
GLSRRVIQVWFQNCRARHKKH
[32] 'Danio rerio Lhx8'
CTSCGTEI--VDKYLL--KVNDM-CWHVRCL-SCSVCQTSLGRH-ISCYIKEKEIFCKLD
YFRKYGT-R---CAHCGRNIHSNDWVRRAK--GN-TYHLACFACFSCKRQLSTGEEFALV
D-ERVLC-RVHYDCMLD--PKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERT
GLSRRVIQVWFQNCRARHKKH
[33] 'Danio rerio Lhx6'
CASCGLEI--LDRYLL--KVNNL-IWHVRCL-ECSVCRTSLRQH-SSCYIKNKEIFCKMD
YFSRFGT-K---CARCGRQIYASDWVRRAR--GN-AYHLACFACFSCKRQLSTGEEFGLV
E-EKVLC-RIHYDTMVE--PKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMT
GLSRRVIQVWFQNCRARHKKH
[34] 'Mus musculus Lhx6'
CSSCGLEI--LDRYLL--KVNNL-IWHVRCL-ECSVCRTSLRQQ-NSCYIKNKEIYCKMD
YFSRFGT-K---CARCGRQIYASDWVRRAR--GN-AYHLACFACFSCKRQLSTGEEFGLV
E-EKVLC-RIHYDTMIE--PKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMT
GLSRRVIQVWFQNCRARHKKH
[35] 'Danio rerio Lhx2'
CAGCGGKI--SDRYYL--LAVDK-QWHMRCL-KCCECKLNLESE-LTCFSKDGSIYCKED
YYRRFSVQR---CARCHLGISASEMVMRAR--DL-VYHLNCFTCTTCNKMLTTGDHFGMK
D-SLVYC-RLHFETLIQ--SQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKT
GLTKRVLQVWFQNARAKFRRN
[36] 'Mus musculus Lhx2'
CAGCGGKI--SDRYYL--LAVDK-QWHMRCL-KCCECKLNLESE-LTCFSKDGSIYCKED
YYRRFSVQR---CARCHLGISASEMVMRAR--DL-VYHLNCFTCTTCNKMLTTGDHFGMK
D-SLVYC-RLHFEALLQ--SQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKT
GLTKRVLQVWFQNARAKFRRN
[37] 'Mus musculus Lhx9'
CAGCGGKI--SDRYYL--LAVDK-QWHLRCL-KCCECKLALESE-LTCFAKDGSIYCKED
YYRRFSVQR---CARCHLGISASEMVMRAR--DS-VYHLSCFTCFTCNKTLTTGDHFGMK
D-SLVYC-RAHFETLLQ--SQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKT
GLTKRVLQVWFQNARAKFRRN
[38] 'Lottia gigantea Lhx2/9'
------------------MAVDK-QWHVQCL-KCSDCKLPLDSE-LTCFARDGCIYCKDD
YYRRFGVKR---CARCHLGIAANELVMRAR--DV-VYHLSCFTCNACNRPLTTGEQFGMK
D-HLVYC-RTDYEMMFQ--GSRQKRVRTSFKHHQLRTMKSYFALNHNPDAKDLKQLAQKT
GLNKRVLQVWFQNARAKYRRN
[39] 'Saccoglossus kowalevskii Lhx2/9'
CAGCGGRI--LDRYYL--LAVDK-QWHMQCL-KCCECKLRLDSE-LTCFAKDGSIYCKDD
YYRRFSVKR---CARCHLGISASEMVMRAR--DL-VYHLSCFTCATCNKALATGDHFGMK
D-AMVYC-RSHYEAMLH--QQRTKRMRTSFKHHQLRTMKSYFALNHNPDAKDLKQLAQKT
GLTKRVLHVWFQNARAKYRRS
[40] 'Branchiostoma floridae Lhx2/9'
CGGCGEKI--QDRFFL--HAVDR-QWHSACL-KCCECDVRLDCE-LTCFSKDGRIYCRED
YYRRFAVQR---CGRCHLGITAREMVMRAR--DS-VYHLACFTCVTCDKALTTGDEFGMQ
G-SAIYC-RYHYETFMR--ATKTKRIRTSFKHHQLRTLKSYFAINHNPDSKDLQQLAQKT
GLTKRVLQVWFQNARAKHRRN
[41] 'Nematostella vectensis Lhx2/9'
CAGCGSRI--LERFYL--MAVDQ-EWHADCL-KCSDCELRLDNE-LTCFSKDGVILCRED
YYRRFSVKK---CSSCSQAISSKELVMRAR--DQ-VYHVNCFACDRCKRMLATGEYFGMR
G-IRIYC-KEDYEELLR--DGRPKRVRTSFKHHQLRAMKTYFAMNHNPDAKDLKQLSQKT
GLTKRVLQVWFQNARAKFRRT
[42] 'Drosophila melanogaster Apterus'
CSGCGRQI--QDRFYL--SAVEK-RWHASCL-QCYACRQPLERE-SSCYSRDGNIYCKND
YYSFFGTRR---CSRCLASISSNELVMRAR--NL-VFHVNCFCCTVCHTPLTKGDQYGII
D-ALIYC-RTHYSIARE--SSRTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKT
GLPKRVLQVWFQNARAKWRRM
[43] 'Trichoplax adhaerens Lhx2/9'
CAGCGRSI--MDQEYLGIQKTDK-KWHIQCL-RCYDCNEPLDKD-QSCYVKQGNIFCRTD
YFNRFGSIK---CPTCNSGISPKEHVMKAR--EY-AYHCSCFICHTCNRLLKTGEEFAMR
G-CKLYC-KEHFQSITS--HGRSKRIRTSFKQPQLRTMKTYFALNHNPDSKDLKQLSIKT
GLNKRVLQVWFQNARAKYRRS
[44] 'Ciona intestinalis Lhx3/4'
CTGCDHHI--FDRYIL--KVQDK-PWHSQCL-KCNDCGRQLTD---KCFSRGSYVYCKED
FFKRFGT-K---CSGCELAIPPTQVVRRAQ--DN-VYHLECFRCFMCSEQLGTGDQFYLL
DDSRLVC-KKDYEHAKS--DNGIKRPRTTITAKQLETLKIAYNQSPKPARHVREQLSSDT
GLDMRVVQVWFQNRRAKEKRL
[45] 'Branchiostoma floridae Lhx3/4'
CAGCEQVI--LDRFIL--KVLDR-SWHAKCL-QCSDCQAQLTD---KCFSRDGHVYCKDD
FFRRFGT-K---CAGCGQGIPPTQVVRRAQ--DK-IYHLQCFACIMCKRQLATGDEFYLM
EDAKLVC-KSDYEAAKQ--EGTQKRPRTTITAKQLETLKQAYQNSPKPARHVREQLSQET
GLDMRVVQVWFQNRRAKEKRL
[46] 'Lottia gigantea Lhx3/4'
-------------FIL--KVLER-SWHSKCL-KCADCQIQLSD---KCFSKGDHVYCKED
FFQRFGT-K---CAACEKGIPPTEIVRRAQ--DY-VYHLDCFACLMCSEKLKTGDEFYLM
EDKKLVC-KEDYETAKA--DSSNKRPRTTINAKQLENLKRAYNESAKPARHVREQLSAET
GLDMRVVQVWFQNRRAKEKRL
[47] 'Mnemiopsis leidyi Lhx3/4'
CAGCDQPI--TDRFIL--KVMEK-NWHSACL-KCHDCLAQLTD---KCFSRGDFVYCKDD
FYKRYGT-K---CAKCEKVIPPSQVVRRAG--GH-VFHMDCFVCIICSRTLNTGDEFYFV
DDNQLVC-RSDYDNFKT--NQGIKRPRTTITAKQLETLKTAYENSPKPARHVREQLSSET
GLDMRVVQVWFQNRRAKEKRM
[48] 'Saccoglossus kowalevskii Lhx3/4'
CSGCEHPI--LDRFIL--KVQDR-AWHSKCL-KCTDCQAQLSD---KCYSRGGQVYCKED
FFKRFGT-K---CSACDQGIPPTQVVRRAQ--DN-VYHLQCFACVMCNRQLATGDEFYLM
NDNKLVC-KGDYEAAKV--DASNKRPRTTISAKQLETLKTAYANSPKPARHVREQLSSET
GLDMRVVQVWFQNRRAKEKRL
[49] 'Mus musculus Lhx4'
CAGCNQHI--LDKFIL--KVLDR-HWHSSCL-KCADCQMQLAD---RCFSRAGSVYCKED
FFKRFGT-K---CTACQQGIPPTQVVRKAQ--DF-VYHLHCFACIICNRQLATGDEFYLM
EDGRLVC-KEDYETAKQ--EAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSET
GLDMRVVQVWFQNRRAKEKRL
[50] 'Danio rerio Lhx4'
CAGCSQHI--LDKFIL--KVLDR-HWHSKCL-KCADCHALLAD---KCFSRAGNVYCKED
FFKRFGT-K---CASCQQGIPPTQVVRKAQ--DF-VYHLHCFACVMCSRQLATGDEFYLM
EDGRLVC-KEDYETAKQ--ETGAKRPRTTITAKQLETLKSAYKNSPKPARHVREQLSSET
GLDMRVVQVWFQNRRAKEKRL
[51] 'Danio rerio Lhx3'
CAGCNQHI--VDRFIL--KVLDR-HWHSKCL-KCSDCQSQLAD---KCFSRGDSVYCKDD
FFKRFGT-K---CAACQQGIPPTQVVRRAQ--DF-VYHLHCFACIVCKRQLATGDEYYLM
EDSRLVC-KADYETAKQ--DSTAKRPRTTITAKQLETLKNAYNNSPKPARHVREQLSTET
GLDMRVVQVWFQNRRAKEKRL
[52] 'Mus musculus Lhx3'
CAGCDQHI--LDRFIL--KALDR-HWHSKCL-KCSDCHVPLAE---RCFSRGESVYCKDD
FFKRFGT-K---CAACQLGIPPTQVVRRAQ--DF-VYHLHCFACVVCKRQLATGDEFYLM
EDSRLVC-KADYETAKQ--EATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSET
GLDMRVVQVWFQNRRAKEKRL
[53] 'Tribolium castaneum Lhx3/4'
CGGCHELI--LDRFIL--KVADR-TWHAKCL-QCSDCRIQLTD---KCFARNGQLFCKED
FFKRFGT-K---CAGCDLGIPPTQVVRRAQ--DN-VYHLQCFSCVMCARQLNTGDEFYLM
EDRKLVC-KPDYEAAKS--DQPNKRPRTTITAKQLETLKNAYNNSPKPARHVREQLSQDT
GLDMRVVQVWFQNRRAKEKRL
[54] 'Drosophila melanogaster Lhx3/4'
CGGCHELI--LDRFIL--KVLER-TWHAKCL-QCSECHGQLND---KCFARNGQLFCKED
FFKRYGT-K---CSACDMGIPPTQVVRRAQ--DN-VYHLQCFLCAMCSRTLNTGDEFYLM
EDRKLIC-KRDYEEAKA--DQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQLSQDT
GLDMRVVQVWFQNRRAKEKRL
[55] 'Amphimedon queenslandica Lhx3/4'
CAGCNTRI--FDRFIL--RVQDK-SWHAKCL-RCSDCQCQLSD---KCYSRSGQVYCKDD
FSKRFGT-R---CAGCQQPIPPTQVVRRAQ--EN-VYHLQCFACFICQRQLSTGDEFYLM
DDRKLVC-KADYEAAKA--DGSQKRPRTTISQKQLDLLKTAYCVSPKPSRHVRQELSDKT
GLDMRVVQVWFQNKRAKDKRT
[56] 'Nematostella vectensis Lhx3/4-like'
CAGCDEQFGHADRFIL--QALDR-HWSX-CI-RCTDCDESLDV---KCYVREGRVFCPSD
YFRRFGP-K---CASCNKDIQPSQMVHKVD--SN-VYHITCLSCVTCQQQLETRDEFFLL
EDGKVIC-RNDYGDRDE--SSRSKRARTFISNDQLAFLKVAYASSPKTTLRDRERIAKET
GLDMRVVQVWFQNRRAKDKRL
[57] 'Trichoplax adhaerens Lhx1/5a'
CTGCNQLI--QDKFLL--KVADD-LWHEDCL-RCYKCTQPLSK---SCYIKDHKLYCKED
YDKRFGR-K---CQGCNLGILPDEMVYRLH--GS-CYHINCLLCIVCSRQFKVGDKYYIS
DEGKPIC-KEDYDVAIM--HPNLKRPRTSITQQQLKMLNSVYRIKPRPSRITREMIATKV
GLDLRVVQVWFQNKRAKDKRS
[58] 'Mnemiopsis leidyi Lhx1/5'
CAGCNGKIH--DKFLM--KVLDK-TWHSECL-VCVDCGVVLAD---QCFTRNGKFYCSKD
FEKSQAS-S---CGACKKDITPDDMILKPPNTVG-MFHVKCFTCSKCSRQLEAGEEFYTI
DNKKFLC-SRDFKNHRS--TGKRRGPRTTIKSKQLDILKAAFKSNQKPTRNIREQLATET
GLNMRVIQVWFQNRRSKERRM
[59] 'Ciona intestinalis Lhx1/5'
CSRCNHVIS--NKFVF--QVDGK-FWHGDCV-VCSDCECPLSN---RCYVRNEELFCSDD
FCRRFGK-K---CGGCGGALYPNDLVHKVGQINS-VFHVRCFVCYVCNNNLEPGKPFQAN
ERGLLYS-EEEVWGESN--ATKRRGPRTTIKAKQLETLKNAFLSTPKPTRHIREKLAQDT
GLSMRVIQVWFQNRRSKERRI
[60] 'Danio rerio Lhx1'
CAGCERPIL--DRFLL--NVLDR-AWHIKCV-QCCECKCNLTE---KCFSREGKLYCKND
FFRRFGT-K---CAGCAQGISPNDLVRRAR--SK-VFHLNCFTCMMCNKQLSTGEELYII
DENKFVC-KDDYLSN-T--GGKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQET
GLNMRVIQVWFQNRRSKERRM
[61] 'Mus musculus Lhx1'
CAGCKRPIL--DRFLL--NVLDR-AWHVKCV-QCCECKCNLTE---KCFSREGKLYCKND
FFRCFGT-K---CAGCAQGISPSDLVRRAR--SK-VFHLNCFTCMMCNKQLSTGEELYII
DENKFVC-KEDYLSNSS--GAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQET
GLNMRVIQVWFQNRRSKERRM
[62] 'Danio rerio Lhx5'
CAGCERPIL--DRFLL--NVLDR-AWHAKCV-QCCECNCNLTE---KCFSRDGKLYCKID
FFRRFGT-K---CAGCLQGISPSDLVRRAR--SK-VFHLNCFTCMVCNKQLSTGEELYVI
DENKFVC-KEDYLSA-S--CTKRRGPRTTIKAKQLETLKAAFVATPKPTRHIREQLAQET
GLNMRVIQVWFQNRRSKERRM
[63] 'Mus musculus Lhx5'
CAGCERPIL--DRFLL--NVLDR-AWHIKCV-QCCECKTNLSE---KCFSREGKLYCKND
FFRRFGT-K---CAGCAQGISPSDLVRKAR--SK-VFHLNCFTCMVCNKQLSTGEELYVI
DENKFVC-KDDYLSS-S--GTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQET
GLNMRVIQVWFQNRRSKERRM
[64] 'Saccoglossus kowalevskii Lhx1/5'
CAGCDRPIL--DRFLL--NVLDR-AWHVKCV-QCSDCNCTLSD---KCYSREGKLYCRTD
FVRRYGT-K---CAGCSHGIAPNDLVRRAR--NK-VFHLKCFTCMVCSKQLSTGEELYVV
DENQYIC-KDDYLGSKS--GTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQET
GLNMRVIQVWFQNRRSKERRM
[65] 'Lottia gigantea Lhx1/5'
CAGCERPIS--DRFLL--NVLDR-AWHAKCV-QCFDCKNNLTE---KCFYREGKLYCRLD
FFRRYGT-K---CAGCSHGISPNDLVRRAR--NK-VFHLKCFTCMVCRKQLSTGEELYIL
DENKFIC-KEDYINSKF--GAKRRGPRTTIKAKQLEVLKAAFNATPKPTRHIREQLAQET
GLNMRVIQVWFQNRRSKERRM
[66] 'Branchiostoma floridae Lhx1/5'
CAGCERPVL--DRFLL--NVLDR-AWHAKCV-RCSDCSCRLTE---KCFTRDSKLYCRED
FFRRFGT-K---CAGCTQGILPNDLVRRAR--NK-VFHLKCFTCAACAKQMATGEELFVV
DDDKFIC-KDCYHNNKV--GAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQET
GLNMRVIQVWFQNRRSKERRM
[67] 'Trichoplax adhaerens Lhx1/5b'
CAGCQLPIC--DKFLL--SVLDR-KWHTKCV-QCSQCKVQLSE---KCFSRDGKLYCRND
FYRTYGT-K---CSGCGIGIPPNELVRRAR--DD-VYHIKCLKCAICGRQMSTGEQLYIN
QHNQYIC-QADYQNSIS--NCKKRGPRTTIKTEQLEMLKNAFAITPKPTRLIRERLAQQT
GLNMRVIQVWFQNRRSKERRV
[68] 'Tribolium castaneum Lhx1/5'
CAACDKPIL--DKFLL--NVLER-TWHADCV-RCFDCHAPLTD---KCFSRENKLFCRND
FFRRYGT-K---CGGCGQGISPSDLVRKAR--DK-VFHLNCFTCLVCRKQLSTGEELYVL
DDNKFIC-KDDYLNGNK--GSKRRGPRTTIKAKQLEILKTAFSQTPKPTRHIREQLAKET
GLPMRVIQVWFQNKRSKERRL
[69] 'Drosophila melanogaster Lhx1/5'
CAGCNKPIL--DKFLL--NVLER-AWHASCV-RCCECLQPLTD---KCFSRESKLYCRND
FFRRYGT-K---CSGCGQGIAPSDLVRKPR--DK-VFHLNCFTCCICRKQLSTGEQLYVL
DDNKFIC-KDDYLLGKA--GSKRRGPRTTIKAKQLEVLKTAFNQTPKPTRHIREQLAKET
GLPMRVIQVWFQNKRSKERRM
[70] 'Acropora millepora Lhx1/5'
CAGCELPIS--DKFLL--KVLDR-LWHIKCV-HCHDCKSALTN---KCFSREGKLFCKND
FYRRYGT-K---CAGCCLGISPNDMVRRAK--HL-VFHVKCFNCSTCNRQILTGDELYYV
GDSKFVC-KEDYYQSRL--GTKRRGPRTTIKAKQLEALKATFAATPKPSRNIREKLAQET
GLNMRVIQVWFQNRRSKERRL
[71] 'Acropora digitifera Lhx1/5'
CAGCELPIS--DKFLL--KVLDR-LWHIKCV-HCHDCKSALTN---KCYSREGKLFCKND
FYRRYGT-K---CAGCCLGISPNDMVRRAK--HL-VFHVKCFNCSTCNRQILTGDELYYV
GDSKFVC-KEDYYQSRL--GTKRRGPRTTIKAKQLEALKATFAATPKPSRNIREKLAQET
GLNMRVIQVWFQNRRSKERRL
[72] 'Nematostella vectensis Lhx1/5'
CAGCQLPIA--DKFLL--KVLDG-VWHAQCV-QCSDCKCPLTE---RCFSREGKLFCKTD
FYRRYGT-K---CSGCDQGISPNDMVRRAK--HL-VFHVDCFVCSYCKRQITTGDELYYI
GDGSFIC-RDDYYHS-H--ASKRRGPRTTIKAKQLEALKSTFAATPKPSRNIREKLAQET
GLNMRVIQVWFQNRRSKERRL
[73] 'Amphimedon queenslandica Lhx1/5'
CAGCSEPIM--ERFLM--KVLDK-SWHVQCV-KCSDCQCLLSE---KCFSRDNKLYCRSD
FFRQYGT-Q---CASCKEGLCPEDLVRRGV--NK-IYHVQCFKCSVCQRQLNTGEQLYLV
QGEKFLC-DSCYPAPAP--DNRKGKTRTSINPKQLIVLQATYEKEPRPSRAMREDLAAQT
GLTAKVIQVWFQNRRSKDKKD
[74] 'Hydra magnipapillata Lhx1/5'
CSKCSLPMN--DKFVA--KILDM-IMHEDCI-RCFSCNCMLKD---TCYFRESKFFCKDH
FFRFYGV-K---CVACKKRIDPLNMVHKYK--EN-LIHVACLRCCFCNREATTGEEIHIT
ENFTFVC-KEDFEKYQN--INKSRGPRTVINLKQLEVLKETFKVNQKPSRLEREKLATKT
GLTTRVIQVWFQNKRSKERRF
[75] 'Nematostella vectensis Lmo4'
CAGCGEKII--DRFLL--LALDQ-YWHVNCL-KCSCCEARLGEIGTSCYSKGGMILCKTD
YVRLYGN-SG-ACAVCAKLIPATELVMKVL--GK-VYHLHCFTCTTCHNQLVPGDRFHVV
N-GRLFC-ENDDP-NLL--------------TKQTVC-----------------------
---------------------
[76] 'Saccoglossus kowalevskii Lmo4'
CAGCGVKIM--DRFLL--HALDR-YWHTGCL-KCTCCGAQLGELGPSCFSKGGMILCKKD
YLRLFGN-SG-ACSSCGQSIPASELVMRAQ--GN-VYHQKCFACTSCHNQLVPGDRFLIV
N-GNLFC-ETDHL-KIL------------IRARNKVC-----------------------
---------------------
[77] 'Mus musculus Lmo4'
CAGCGGKIA--DRFLL--YAMDS-YWHSRCL-KCSCCQAQLGDIGTSCYTKSGMILCRND
YIRLFGN-SG-ACSACGQSIPASELVMRAQ--GN-VYHLKCFTCSTCRNRLVPGDRFHYI
N-GSLFC-EHDRPTALI---------SNPLLPDQKVC-----------------------
---------------------
[78] 'Hydra magnipapillata Lmx1'
CHECKSPIL--DSFLL--NIGGNEYWHECCL-KCHECCEKLFR---VCYKKDGGVYCKYD
YKRLFGI-K---CVACNNIITPNSIAMKVL--DTNLFHIDCFKCQNCGKMLEKGEEYAFK
N-QKLLC-KADFNTEHI-----YKRPRTILTTQQRQNFKTAFEQAPKPCRKIREKLSKET
GLSVRVVQVWFQNQRAKLKKL
[79] 'Hydra magnipapillata Lhx6/8a'
CDACHEIIY--DRYIS--IXGNR-KLHEECL-QCSSCSVSVSLSG-RCYEKNEQIFCEEC
YHLNFSL-V--QCKGCSQSIMKSEYVMKTQ--EN-FYHVYCFRCNLCNSMLQSGERYGVK
G-DKLFC-EAHYYGNNA--LMKEKRYRTTFTQEQVELMQKAFEIERNPDSASLQQLSKEI
NLSKRVLQVWFQNARAKHKKL
[80] 'Mnemiopsis leidyi Lmx1'
CTACRLPIE--ESLLM--KVNDV-FWHEQCL-RCCLCNVPLSDS--CFFDKHQRLYCKAD
HYQRILD-AS-TCCTCNGSINANDLVYRVH--GS-LYHIRCFTCTRCSSSLRKGDEYVMH
GNGDLVC-KTCSDDGLR--KRPRTVLSSVQRKEHLSVFKEAFDRTPRPCRKEREKLSSQT
GLSVRVVQVWFQNQRAKVKKL
;
END;

BEGIN TREES;
	Title 'Trees from "E4b-Lhx-80-final.nexus"';
  TREE 'PhyML ML tree' = [PhyML LG+G4, 100 bootstrap replicates]('Hydra magnipapillata Lhx6/8b':0.185161,'Cladonema pacificum Lhx6/8':0.072937,('Lottia gigantea Lhx6/8':0.112367,(('Tribolium castaneum Arrowhead':0.101565,'Drosophila melanogaster Arrowhead':0.149157)51:0.147474,('Saccoglossus kowalevskii Lhx6/8':0.132936,('Branchiostoma floridae Lhx6/8':0.150048,(('Nematostella vectensis Lhx6/8':0.054846,'Acropora digitifera Lhx6/8':0.118364)96:0.150101,((('Danio rerio Lhx6':0.007128,'Mus musculus Lhx6':0.018823)89:0.11777,('Mus musculus Lhx8':0.021607,'Danio rerio Lhx8':0.069074)46:0.052206)99:0.39663,('Hydra magnipapillata Lhx6/8a':1.690309,((('Lottia gigantea Lhx2/9':0.078355,('Drosophila melanogaster Apterus':0.46665,('Saccoglossus kowalevskii Lhx2/9':0.048122,('Branchiostoma floridae Lhx2/9':0.26875,('Mus musculus Lhx9':0.026063,('Danio rerio Lhx2':0.005077,'Mus musculus Lhx2':0.005184)79:0.022785)63:0.040209)57:0.044626)62:0.081396)13:0.028906)30:0.099668,('Trichoplax adhaerens Lhx2/9':0.542125,'Nematostella vectensis Lhx2/9':0.273539)31:0.093975)87:0.425951,((('Trichoplax adhaerens Islet':0.632678,('Drosophila melanogaster Tailup':0.080945,('Branchiostoma floridae Islet1':0.044161,(('Acropora digitifera Islet':0.108578,'Nematostella vectensis Islet':0.033461)33:0.045428,(('Danio rerio Islet':0.004832,'Mus musculus Islet1':0.005882)98:0.082793,('Ciona intestinalis Islet1':0.128749,('Saccoglossus kowalevskii Islet1':0.049112,('Lottia gigantea Islet1':0.040078,'Mnemiopsis leidyi Islet':0.446876)49:0.022241)34:0.014168)11:0.007611)6:0.013986)1:0.01282)8:0.091931)23:0.107618)100:0.622156,('Nematostella vectensis Lmo4':0.230567,('Mus musculus Lmo4':0.193064,'Saccoglossus kowalevskii Lmo4':0.191048)32:2.0E-6)100:0.640803)33:0.098265,(('Mnemiopsis leidyi Lmx1':1.163837,(('Lottia gigantea Lmx1':0.234495,('Saccoglossus kowalevskii Lmx1':0.134845,(('Danio rerio Lmx1b2':0.073383,'Mus musculus Lmx1a':0.22807)99:0.186023,(('Tribolium castaneum Lmx1a':0.14927,'Drosophila melanogaster Lmx1a':0.304762)98:0.129468,('Tribolium castaneum Lmx1b':0.086713,'Drosophila melanogaster Lmx1b':0.217481)88:0.202214)76:0.153206)25:0.073244)27:0.065012)45:0.12425,('Hydra magnipapillata Lmx1':1.008598,('Nematostella vectensis Lmx1':0.354829,'Acropora digitifera Lmx1':0.083097)98:0.142784)15:0.062539)52:0.087915)79:0.424489,('Trichoplax adhaerens Lhx1/5a':0.976858,(('Amphimedon queenslandica Lhx1/5':0.769247,(('Branchiostoma floridae Lhx1/5':0.14081,(('Lottia gigantea Lhx1/5':0.093464,'Saccoglossus kowalevskii Lhx1/5':0.083594)24:0.007462,(('Tribolium castaneum Lhx1/5':0.067352,'Drosophila melanogaster Lhx1/5':0.081199)92:0.187835,('Danio rerio Lhx5':0.045069,('Mus musculus Lhx5':0.017268,('Danio rerio Lhx1':0.016645,'Mus musculus Lhx1':0.023422)71:0.023351)49:0.007022)78:0.043125)16:0.021904)22:0.026757)29:0.032088,(('Mnemiopsis leidyi Lhx1/5':0.654797,'Ciona intestinalis Lhx1/5':0.837755)32:0.108797,('Trichoplax adhaerens Lhx1/5b':0.385284,('Hydra magnipapillata Lhx1/5':1.139227,('Nematostella vectensis Lhx1/5':0.126806,('Acropora millepora Lhx1/5':0.0,'Acropora digitifera Lhx1/5':0.00548)97:0.117784)89:0.052133)31:0.129883)9:0.003528)12:0.030801)50:0.095869)92:0.233831,('Nematostella vectensis Lhx3/4-like':0.919274,('Branchiostoma floridae Lhx3/4':0.061432,(('Tribolium castaneum Lhx3/4':0.038664,'Drosophila melanogaster Lhx3/4':0.086482)100:0.122709,((('Ciona intestinalis Lhx3/4':0.168703,'Mnemiopsis leidyi Lhx3/4':0.284012)52:0.076526,('Saccoglossus kowalevskii Lhx3/4':0.069443,'Amphimedon queenslandica Lhx3/4':0.262141)40:0.035657)13:0.013767,('Lottia gigantea Lhx3/4':0.169704,(('Mus musculus Lhx4':0.037639,'Danio rerio Lhx4':0.04334)96:0.052248,('Danio rerio Lhx3':0.03077,'Mus musculus Lhx3':0.069887)74:0.027759)80:0.06934)33:0.030057)26:0.033624)40:0.039383)66:0.103636)39:0.071614)44:0.16462)54:0.106064)38:0.2036)87:0.253515)58:0.109425)90:0.212715)70:0.15372)32:0.058381)37:0.038785)58:0.075236)30:0.069878)100:0.528616);
  TREE 'IQPNNI ML consensus tree' = [IQPNNI WAG+G4, 100 bootstrap replicates, relative majority consensus]('Danio rerio Lmx1b2':0.07067,((('Tribolium castaneum Lmx1a':0.15831,'Drosophila melanogaster Lmx1a':0.26641)98:0.12441,('Tribolium castaneum Lmx1b':0.08006,'Drosophila melanogaster Lmx1b':0.21761)94:0.19573)81:0.16382,(('Nematostella vectensis Lmx1':0.33130,'Acropora digitifera Lmx1':0.06451)99:0.20291,(((('Nematostella vectensis Lmo4':0.22694,'Mus musculus Lmo4':0.20120)50:0.00001,'Saccoglossus kowalevskii Lmo4':0.19386)100:0.58398,(((('Danio rerio Islet':0.00513,'Mus musculus Islet1':0.00562)99:0.08600,('Lottia gigantea Islet1':0.03493,'Mnemiopsis leidyi Islet':0.42983)59:0.04983,('Nematostella vectensis Islet':0.03686,'Acropora digitifera Islet':0.10297)50:0.05559,'Branchiostoma floridae Islet1':0.07240,'Saccoglossus kowalevskii Islet1':0.07250,'Ciona intestinalis Islet1':0.13623,'Drosophila melanogaster Tailup':0.19136)56:0.16565,'Trichoplax adhaerens Islet':0.58135)100:0.54379,(((('Danio rerio Lhx6':0.00675,'Mus musculus Lhx6':0.01999)97:0.11840,('Mus musculus Lhx8':0.02471,'Danio rerio Lhx8':0.06898)75:0.05243)100:0.35874,(('Nematostella vectensis Lhx6/8':0.05352,'Acropora digitifera Lhx6/8':0.11343)99:0.19706,((('Hydra magnipapillata Lhx6/8b':0.15410,'Cladonema pacificum Lhx6/8':0.08682)99:0.48656,('Tribolium castaneum Arrowhead':0.09083,'Drosophila melanogaster Arrowhead':0.16046)77:0.15482,'Lottia gigantea Lhx6/8':0.17782)55:0.06933,'Saccoglossus kowalevskii Lhx6/8':0.13052)46:0.05133,'Branchiostoma floridae Lhx6/8':0.14372)82:0.15300)82:0.26397,((((((('Danio rerio Lhx2':0.00528,'Mus musculus Lhx2':0.00527)83:0.02410,'Mus musculus Lhx9':0.02552)64:0.03797,'Branchiostoma floridae Lhx2/9':0.26663)66:0.04840,'Saccoglossus kowalevskii Lhx2/9':0.04829)77:0.10842,'Lottia gigantea Lhx2/9':0.08384,'Drosophila melanogaster Apterus':0.44606)53:0.15703,'Nematostella vectensis Lhx2/9':0.27897,'Trichoplax adhaerens Lhx2/9':0.51578)88:0.30717,'Hydra magnipapillata Lhx6/8a':1.26700)49:0.15512)93:0.22917)57:0.14704)55:0.06165,(((('Tribolium castaneum Lhx1/5':0.05839,'Drosophila melanogaster Lhx1/5':0.08839)94:0.19464,((('Danio rerio Lhx1':0.01629,'Mus musculus Lhx1':0.02422)73:0.02250,'Mus musculus Lhx5':0.01716)60:0.00729,'Danio rerio Lhx5':0.04523)90:0.07586,((('Acropora millepora Lhx1/5':0.00001,'Acropora digitifera Lhx1/5':0.00556)99:0.11313,'Nematostella vectensis Lhx1/5':0.12034)83:0.01244,'Hydra magnipapillata Lhx1/5':1.02761)50:0.21907,'Mnemiopsis leidyi Lhx1/5':0.76732,'Ciona intestinalis Lhx1/5':0.89432,'Saccoglossus kowalevskii Lhx1/5':0.09040,'Lottia gigantea Lhx1/5':0.10317,'Branchiostoma floridae Lhx1/5':0.15739,'Trichoplax adhaerens Lhx1/5b':0.41781)56:0.14895,'Amphimedon queenslandica Lhx1/5':0.65528)94:0.25208,(('Tribolium castaneum Lhx3/4':0.03894,'Drosophila melanogaster Lhx3/4':0.08186)99:0.14936,(('Mus musculus Lhx4':0.03543,'Danio rerio Lhx4':0.04424)94:0.05144,('Danio rerio Lhx3':0.03282,'Mus musculus Lhx3':0.06889)73:0.02473)84:0.09914,('Ciona intestinalis Lhx3/4':0.17808,'Mnemiopsis leidyi Lhx3/4':0.26360)67:0.08288,'Branchiostoma floridae Lhx3/4':0.13286,'Lottia gigantea Lhx3/4':0.19133,'Saccoglossus kowalevskii Lhx3/4':0.10887,'Amphimedon queenslandica Lhx3/4':0.27924)80:0.20733,'Nematostella vectensis Lhx3/4-like':0.78902,'Trichoplax adhaerens Lhx1/5a':0.90232)54:0.15457)93:0.46351,'Hydra magnipapillata Lmx1':0.84603,'Mnemiopsis leidyi Lmx1':1.16790)49:0.17569,'Lottia gigantea Lmx1':0.26275,'Saccoglossus kowalevskii Lmx1':0.14622)99:0.21987,'Mus musculus Lmx1a':0.21316);
  TREE 'BioNJ consensus tree' = [BioNJ WAG+G4, 100 bootstrap replicates, relative majority consensus]('Danio rerio Lmx1b2':0.06360,(('Nematostella vectensis Lmx1':0.34625,'Acropora digitifera Lmx1':0.06158)93:0.32174,((((('Nematostella vectensis Lmo4':0.23583,'Mus musculus Lmo4':0.21979)52:0.00001,'Saccoglossus kowalevskii Lmo4':0.18870)100:0.60526,((((('Danio rerio Islet':0.00525,'Mus musculus Islet1':0.00580)99:0.09053,('Branchiostoma floridae Islet1':0.06056,'Saccoglossus kowalevskii Islet1':0.07121)48:0.01367,'Nematostella vectensis Islet':0.08230,'Acropora digitifera Islet':0.14000,'Lottia gigantea Islet1':0.09619,'Ciona intestinalis Islet1':0.13749,'Drosophila melanogaster Tailup':0.19864)80:0.11710,'Trichoplax adhaerens Islet':0.67357)64:0.00257,'Mnemiopsis leidyi Islet':0.36939)100:0.61587,(((('Danio rerio Lhx6':0.00691,'Mus musculus Lhx6':0.02054)100:0.12138,('Mus musculus Lhx8':0.02457,'Danio rerio Lhx8':0.07180)98:0.05464)100:0.35697,(('Nematostella vectensis Lhx6/8':0.05556,'Acropora digitifera Lhx6/8':0.11548)100:0.21664,('Tribolium castaneum Arrowhead':0.07804,'Drosophila melanogaster Arrowhead':0.18036)84:0.22900,((('Hydra magnipapillata Lhx6/8b':0.19697,'Cladonema pacificum Lhx6/8':0.05781)100:0.46974,'Lottia gigantea Lhx6/8':0.11356)56:0.11738,'Saccoglossus kowalevskii Lhx6/8':0.13634)53:0.04300,'Branchiostoma floridae Lhx6/8':0.17261)64:0.16950)73:0.27993,((((((('Danio rerio Lhx2':0.00547,'Mus musculus Lhx2':0.00536)89:0.02498,'Mus musculus Lhx9':0.02403)93:0.07046,'Saccoglossus kowalevskii Lhx2/9':0.06899)92:0.06518,'Lottia gigantea Lhx2/9':0.13893)62:0.03114,'Branchiostoma floridae Lhx2/9':0.28544)53:0.12562,'Nematostella vectensis Lhx2/9':0.33322,'Drosophila melanogaster Apterus':0.41734,'Trichoplax adhaerens Lhx2/9':0.58267)92:0.33853,'Hydra magnipapillata Lhx6/8a':1.28115)49:0.15973)86:0.18008)61:0.22155)65:0.05777,((((('Acropora millepora Lhx1/5':0.00001,'Acropora digitifera Lhx1/5':0.00571)100:0.12118,'Nematostella vectensis Lhx1/5':0.12307)92:0.18059,(('Tribolium castaneum Lhx1/5':0.06100,'Drosophila melanogaster Lhx1/5':0.09129)99:0.17611,(((('Danio rerio Lhx1':0.01677,'Mus musculus Lhx1':0.02508)82:0.02324,'Mus musculus Lhx5':0.01777)63:0.00833,'Danio rerio Lhx5':0.04612)93:0.06785,'Saccoglossus kowalevskii Lhx1/5':0.09020,'Lottia gigantea Lhx1/5':0.09518,'Branchiostoma floridae Lhx1/5':0.16553)60:0.03422)75:0.05843,(('Mnemiopsis leidyi Lhx1/5':0.46293,'Hydra magnipapillata Lhx1/5':0.90749)52:0.16797,'Ciona intestinalis Lhx1/5':0.78844)47:0.07689,'Trichoplax adhaerens Lhx1/5b':0.37868)63:0.13685,'Amphimedon queenslandica Lhx1/5':0.65629)77:0.21076,((('Tribolium castaneum Lhx3/4':0.03991,'Drosophila melanogaster Lhx3/4':0.08455)100:0.15497,(('Mus musculus Lhx4':0.03628,'Danio rerio Lhx4':0.04576)90:0.05364,('Danio rerio Lhx3':0.03338,'Mus musculus Lhx3':0.07116)78:0.02496)92:0.10223,('Ciona intestinalis Lhx3/4':0.18416,'Mnemiopsis leidyi Lhx3/4':0.27100)58:0.08727,'Branchiostoma floridae Lhx3/4':0.13596,'Lottia gigantea Lhx3/4':0.19751,'Saccoglossus kowalevskii Lhx3/4':0.11107,'Amphimedon queenslandica Lhx3/4':0.28985)86:0.15251,'Nematostella vectensis Lhx3/4-like':0.79579)44:0.06649)49:0.13101)62:0.14833,'Trichoplax adhaerens Lhx1/5a':0.75143)92:0.42503,((('Tribolium castaneum Lmx1b':0.08904,'Drosophila melanogaster Lmx1b':0.21393)96:0.20496,('Tribolium castaneum Lmx1a':0.15588,'Drosophila melanogaster Lmx1a':0.28234)96:0.12413)97:0.17910,'Lottia gigantea Lmx1':0.25045,'Saccoglossus kowalevskii Lmx1':0.14733)47:0.06482,'Hydra magnipapillata Lmx1':0.98752,'Mnemiopsis leidyi Lmx1':1.21791)97:0.22519,'Mus musculus Lmx1a':0.22649);
END;