#NEXUS
BEGIN DATA;
	Title 'Alignment from "E6-PRD-164.nexus"';
  DIMENSIONS NTAX=164 NCHAR=64;
  FORMAT DATATYPE=PROTEIN
  GAP=-
  ;
MATRIX
[1] 'Acropora digitifera Mixer-like'
KQDVKRKRKNLTKEQLEILESVYRKEKYPHMDDRIKLEKSTNLSEDRIQV-WFQNRRAKD
RKKI
[2] 'Acropora millepora Mixer-like'
KQDVKRKRKNLTKEQLEILESVYKKEKYPHMDDRIKLEKSTNLSEDRIQV-WFQNRRAKD
RKRI
[3] 'Nematostella vectensis Mixer-like'
RADIKRKRRNLTKRQQKILETAYSTIKYPTIEDRQRLETSTQLSEDRIQV-WFQNRRAKD
RRLQ
[4] 'Danio rerio Mixer'
LFTHRRKRTNFTQQQIDVLEKVYLDTKYPDIYLREKLEALTGLPESRIQV-WFQNRRAKS
RRQV
[5] 'Mus musculus MixerL1'
SAPQRRKRTSFSSEQLQLLELVFRQTMYPDIHLRERLAALTLLPESRIQV-WFQNRRAKS
RRQS
[6] 'Danio rerio Uncx4.1'
GCKRRRTRTNFTGWQLEELEKAFNESHYPDVFMREALALRLDLVESRVQV-WFQNRRAKW
RKKE
[7] 'Mus musculus Uncx4.1'
GCKRRRTRTNFTGWQLEELEKAFNESHYPDVFMREALALRLDLVESRVQV-WFQNRRAKW
RKKE
[8] 'Lottia gigantea Unc4.1'
AAKRRRTRTNFTGWQLEELEKAFNDSHYPDVFMREALALKLDLVESRVQV-WFQNRRAKW
RKKE
[9] 'Saccoglossus kowalevskii Unc4.1'
SGKRRRTRTNFNGWQLEELEKAFNDSHYPDVFTREALAMKLDLVESRVQV-WFQNRRAKW
RKKE
[10] 'Branchiostoma floridae Unc4'
PPKRRRTRTNFNSWQLEELERAFQESHYPDVFMREALALRLDLVESRVQV-WFQNRRAKW
RKKE
[11] 'Drosophila melanogaster Unc4'
AAKRRRSRTNFNSWQLEELERAFSASHYPDIFMREALAMRLDLKESRVAV-WFQNRRAKV
RKRE
[12] 'Branchiostoma floridae Unc4c'
KPRRMRVRTNFTSWQLEALERAFETTHYPDIFMREALALRLDLMESRVQV-WFQNRRAKW
RKQE
[13] 'Saccoglossus kowalevskii Unc4c-like'
KSRRMRVRTNFAAWQLDELERAFETTHYPDIFMREALAMRLDLMEARVQV-WFQNRRAKW
RKRE
[14] 'Acropora digitifera Unc4c'
KPRRMRVRTNFSPWQLEQLERAFETTHYPDVFMREALALRLDLTEARVQV-WFQNRRAKW
RKRE
[15] 'Acropora millepora Unc4c'
KPRRMRVRTNFSPWQLEQLERAFETTHYPDVFMREALALRLDLTEARVQV-WFQNRRAKW
RKRE
[16] 'Nematostella vectensis Unc4c'
---RMRVRTNFSPWQLEELEHAFETTHYPDVFMREALAMRLDLTEARVQV-WFQNRRAKW
RKRE
[17] 'Acropora digitifera Unc4.1'
LPKKRRSRTNFDAWQLGELERVFKKTQYPDVFTREALALKLDLLESRVQV-WFQNRRAKL
RREE
[18] 'Acropora millepora Unc4.1'
LPKKRRSRTNFDAWQLGELERVFKKTQYPDVFTREALALKLDLLESRVQV-WFQNRRAKL
RREE
[19] 'Nematostella vectensis Unc4.1'
LPKRRRSRTNFDSWQLEELEKIYHHNQYPDVFTREALALKLDLLESRIQV-WFQNRRAKM
RREE
[20] 'Hydra magnipapillata Unc4.1'
------MRTNFSPWQLEELETAFKKSYYPDVYTREVLALKLEIAESRIQV-WFQNRRAKW
RKAE
[21] 'Tribolium castaneum Alx'
KRKQRRYRTTFTSYQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQV-WFQNRRAKW
RKQE
[22] 'Drosophila melanogaster Alx'
KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQV-WFQNRRAKW
RKQE
[23] 'Oscarella carmela Arx-likeB'
KRKQRRNRTTFTAQQLEEMEKVFSRTHYPDVFTREELANRIGLTEARVQV-WFQNRRAKW
RKRE
[24] 'Danio rerio Arx-like'
KRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQV-WFQNRRAKW
RKRE
[25] 'Branchiostoma floridae Q50'
KRKQRRYRTTFTSYQLEELERAFAKTHYPDVFTREELAMRVDLTEARVQV-WFQNRRAKW
RKRE
[26] 'Mnemiopsis leidyi PRD61'
---QRRNRTTFSSVQLHELERAFQQSHYPDVFTREELAMRLDLTEARVQV-WFQNRRAKW
RKRE
[27] 'Ciona intestinalis 118343665'
KRKQRRYRTTFSAFQLEELERAFQKTHYPDVFTREELAMRVDLTEARVQV-WFQNRRAKW
RKRE
[28] 'Acropora digitifera Arx'
KRKQRRYRTTFTSLQLEELERAFSKTHYPDVFTREALALKIDLTEARVQV-WFQNRRAKW
RKRE
[29] 'Acropora millepora Arx'
KRKQRRYRTTFTSLQLEELERAFSKTHYPDVFTREALALKIDLTEARVQV-WFQNRRAKW
RKRE
[30] 'Nematostella vectensis Arx'
KRKQRRYRTTFTSYQLEELERAFAKTHYPDVFTREALAVKIDLTEARVQV-WFQNRRAKW
RKRE
[31] 'Oscarella carmela Arx-likeA'
PRKQRRYRTTFSPAQLQMLEDAFSKTHYPDVFTREELANRIGLAEARVQV-WFQNRRAKW
RKRE
[32] 'Trichoplax adhaerens 196002946'
---RKRYRTTFTSQQLEELERAFELAPYPDVFTREDLATKISLTEARVQV-WFQNRRAKW
RKKE
[33] 'Amphimedon queenslandica Arx-likeB'
KGKQRRHRTNFTSHQLEELEKAFEKTRYPDVFMREELAMKISLTEARVQV-WFQNRRAKW
RKAE
[34] 'Oscarella carmela Arx-likeC'
KRKQRRYRTTFSSVQLEELEHAFEKTHYPDVFMREELALRINLTEARVQV-WFQNRRAKW
RKKE
[35] 'Acropora digitifera Alx'
KRKKRRNRTTFTSFQLEEMERIFQKTHYPDVYTREQLALRCDLTEARVQV-WFQNRRAKW
RKRE
[36] 'Acropora millepora Alx'
KRKKRRNRTTFTSFQLEEMERIFQKTHYPDVYTREQLALRCDLTEARVQV-WFQNRRAKW
RKRE
[37] 'Nematostella vectensis Alx'
KRKKRRNRTTFTAYQLEEMERVFQKTHYPDVYTREQLALRCALTEARVQV-WFQNRRAKW
RKRE
[38] 'Saccoglossus kowalevskii Alx'
KRKKRRNRTTFTSFQLDEMEKVFQRTHYPDVYSREQLALRCDLTEARVQV-WFQNRRAKW
RKRE
[39] 'Branchiostoma floridae Alx-like'
KKKKRRNRTTFTSFQLEEMERVFQKTHYPDVYMREQLALRADLTEARVQV-WFQNRRAKW
RKKE
[40] 'Mus musculus ALX1'
SSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQV-WFQNRRAKW
RKRE
[41] 'Danio rerio Alx1'
SSKKRRHRTTFTSAQLEELEKVFQKTHYPDVYVREQLAMRTELTEARVQV-WFQNRRAKW
RKRE
[42] 'Mnemiopsis leidyi PRD43'
---SRRFRTTFTSCQLQALEGAFQQTHYPDMYMREELAMRIDLTEARVQV-WFQNRRAKW
RKRE
[43] 'Amphimedon queenslandica Arx-likeA'
KRQQRRFRTTFTSYQLQELEAAFAKTHYPDVFMREDLALRINLTEARVQV-WFQNRRAKW
RRAQ
[44] 'Branchiostoma floridae Rx'
GEKPKRNRTTFSTRQLQELERAFRQTHYPDIFMREELAMRVNLPESRVQV-WFQNRRAKW
RKRE
[45] 'Saccoglossus kowalevskii Rx-like'
G-KPKRSRTTFSSRQLQELERAFRRTHYPDMFTRERLARRIGLPESRVQV-WFQNRRAKW
RKKE
[46] 'Amphimedon queenslandica Arx-likeC'
IMKSKRNRTTFTAHQLDELEMIFRQTHYPDVLLREKLAQRIGLPESRVQV-WFQNRRAKW
RKRE
[47] 'Cladonema pacificum Otp'
PSKQKRHRTRFSPAQLNELERYFSKTHYPDIFVREELAMRIGLTESRVQV----------
----
[48] 'Lottia gigantea Otp'
PSKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREEMALRIGLTESRVQV-WFQNRRAKW
KKRK
[49] 'Saccoglossus kowalevskii Otp'
PLKQKRHRTRFTPAQLNELERNFAKTHYPDIFMREEIAMRVGLTESRVQV-WFQNRRAKW
KKRK
[50] 'Danio rerio OtpB'
QQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQV-WFQNRRAKW
KKRK
[51] 'Mus musculus OTP'
QQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQV-WFQNRRAKW
KKRK
[52] 'Drosophila melanogaster Otp'
QQDQKRHRTRFTPAQLNELERCFSKTHYPDIFMREEIAMRIGLTESRVQV-WFQNRRAKW
KKRK
[53] 'Trichoplax adhaerens Otp'
---PKRHRTRFTPGQLSELERCFSKTHYPDIFMREELALRIGLSESRVQV-WFQNRRAKY
KKKK
[54] 'Ciona intestinalis Otp'
VTKSKRHRTRFAPSQLSELERSFSSTHYPDIFMREEIAHRIGLTESRVQV-WFQNRRAKW
KKRK
[55] 'Acropora digitifera Otp'
GVKQKRHRTRFTPAQLNELERCFARTHYPDVFMREDLAARIGLTESRVQVKALKNVDVR-
----
[56] 'Acropora millepora Otp'
GVKQKRHRTRFTPAQLNELERCFARTHYPDVFMREDLAARIGLTESRVQVKALKNVDVRL
T---
[57] 'Nematostella vectensis Otp'
AAKQKRHRTRFTPAQLNELERCFARTHYPDVFMREELAARIGLTESRVQV-WFQNRRAKW
KKRK
[58] 'Hydra magnipapillata Otp'
HSKQKRHRTRFTQTQLNELERYFNKTHYPDIFVREELAMRIDLTESRVQV-WFQNRRAKW
KKRR
[59] 'Hydra magnipapillata Rx'
RQKLRRNRTTFTTYQLHQLERSFDKTQYPDVFTRENLALKLDLSEARVQV-WFQNRRAKW
RKRE
[60] 'Trichoplax adhaerens Rx'
---LRRSRTTFTTLQLHQLERAFEKTQYPDVFSREDLAMRLELTEARVQV-WFQNRRAKW
RKQE
[61] 'Tribolium castaneum Rx'
KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQV-WFQNRRAKW
RRQE
[62] 'Mus musculus Rx'
KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQV-WFQNRRAKW
RRQE
[63] 'Danio rerio Rx1'
KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQV-WFQNRRAKW
RRQE
[64] 'Lottia gigantea Rx'
KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAIKINLPEVRVQV-WFQNRRAKW
RRQE
[65] 'Drosophila melanogaster Rx'
KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQV-WFQNRRAKW
RRQE
[66] 'Branchiostoma floridae Rax'
KKKHRRNRTTFTTFQLHELERAFEKSHYPDVYSREELAMKINLPEVRVQV-WFQNRRAKW
RRQE
[67] 'Saccoglossus kowalevskii Rx'
KKKHRRNRTTFTTFQLHELERAFEKSHYPDVYSREELALKVNLPEVRVQV-WFQNRRAKW
RRQE
[68] 'Acropora digitifera Rx'
TKKHRRNRTTFTTFQLHELEQAFEKSHYPDVYTREELALKIDLPEVRVQV-WFQNRRAKW
RRQE
[69] 'Acropora millepora Rx'
TKKHRRNRTTFTTFQLHELEQAFEKSHYPDVYTREELALKIDLPEVRVQV-WFQNRRAKW
RRQE
[70] 'Nematostella vectensis Rx'
KKKLRRNRTTFTTFQLHELERAFEKSHYPDVYTREELALKISLPEVRVQV-WFQNKRAKW
RREE
[71] 'Lottia gigantea Pax6'
RQKLRRNRTTFCQSQLEVLEQEFLKTHYPGVATREDLAVKTGLSEARVQV-WFSNRRAKW
RRNE
[72] 'Acropora digitifera Pax6b'
---LRRNRTTFTSEQLDILEREFEKTHYPGINTREELATKTKLSEARVQV-WFSNRRAKW
RRTQ
[73] 'Saccoglossus kowalevskii Eyegone'
KKKSRRSRTTFSGDQLDVLEKEFDKTHYPCVNTREDLANKTHLSEARVQV-WFSNRRAKW
RRHK
[74] 'Drosophila melanogaster Eyegone'
EPKFRRNRTTFSPEQLEELEKEFDKSHYPCVSTRERLSSRTSLSEARVQV-WFSNRRAKW
RRHQ
[75] 'Nematostella vectensis PaxC'
KRKLRRNRTTFTPDQLEMLEKEFEKSHYPDVATREELANKIDMSEARVQV-WFSNRRAKW
RRHQ
[76] 'Cladonema pacificum ArxC'
KRKQRRYRTTFTQFQLDELERAFDKTHYPDVFMREELAMRISLTEARVQV-RLCSNMVIL
QPCM
[77] 'Cladonema pacificum ArxD'
----RRYRTTFTQLQLDELERAFEKTHYPDVFMREELAMRISLTEARVQV----------
----
[78] 'Cladonema pacificum ArxB'
RRGHRRNRTTFTRQQLEELEKLFDSTHYPDVFAREELATRINLTEARVQV-RLFFSFCIR
KICI
[79] 'Cladonema pacificum ArxA'
PRKLRRSRTTFTTYQLHQLERAFDKTQYPDVFTREELAVRLDLSEARVQV-RIF----LL
TPAQ
[80] 'Acropora millepora 1217446'
RSYQRRNRTKFTPEQIEELESAFKKTQYPDALTREELAERLHISESKIQV----------
----
[81] 'Danio rerio Pax3'
KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQV-WFSNRRARW
RKQA
[82] 'Mus musculus Pax7'
KRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARFQV-WFSNRRARW
RKQA
[83] 'Branchiostoma floridae Pax3/7'
KRKQRRSRTTFTPEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQV-WFSNRRARW
RKQQ
[84] 'Lottia gigantea Pax3/7'
TRKMRRNRTTFSGEQLEELEKVFEKTHYPDIYTREELAQRTKLTEARVQV-WFSNRRARW
RKQV
[85] 'Acropora digitifera Pax3/7a'
ARKQRRSRTKFTHAQLNALEKAFQKTQYPDVYTREELAHRLSLTEARVQV-WFSNRRARL
RKKD
[86] 'Acropora millepora Pax3/7a'
ARKQRRSRTKFTHAQLNALEKAFQKTQYPDVYTREELAHRLSLTEARVQV-WFSNRRARL
RKKD
[87] 'Nematostella vectensis PaxD2'
TRKQRRSRTKFTSKQVDELEKAFLKTQYPDVYTREELAQRLNLTEARVQV-WFSNRRARL
RKKK
[88] 'Drosophila melanogaster Gooseberry'
KRKQRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQV-WFSNRRARL
RKQL
[89] 'Acropora digitifera Pax3/7b'
SRKPRRGRTKFSLKQVDELEKAFAKTHYPDVYTREELAQRLDLSEARVQV-WFSNRRARL
RKEE
[90] 'Acropora millepora Pax3/7b'
SRKPRRGRTKFSLKQVDELEKAFAKTHYPDVYTREELAQRLDLSEARVQV-WFSNRRARL
RKEE
[91] 'Nematostella vectensis PaxD'
CHKPRRSRTRFTVSQTDELERAFRKTHYPDIYAREELAQRLGLSEARVQV-WFSNRRARL
RKER
[92] 'Mus musculus Pax6'
KRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQV-WFSNRRAKW
RREE
[93] 'Danio rerio Pax6'
KRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQV-WFSNRRAKW
RREE
[94] 'Branchiostoma floridae Pax6'
KRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQV-WFSNRRAKW
RREE
[95] 'Saccoglossus kowalevskii Pax6'
KRKLQRNRTSFTQYQIETLEKEFERTHYPDVFARERLAQKIDLPEARIQV-WFSNRRAKW
RREE
[96] 'Acropora digitifera Pax6a'
HKIVRRQRTTFSGEQIEQLEKTFEKTHYPDVFTREKLAQDVDLSEARIQV-WFSNRRAKW
RKQE
[97] 'Acropora millepora Pax6a'
HKIVRRQRTTFSGEQIEQLEKTFEKTHYPDVFTREKLAQDVDLSEARIQV-WFSNRRAKW
RKQE
[98] 'Nematostella vectensis PaxB'
SKMSRRQRTNFTDEQIEKLEKVFEKTHYPDVFTREELAQQVNLSEARIQV-WYSNRRAKW
RKEG
[99] 'Lottia gigantea Dmbx1'
HRKQRRSRTAFTNQQLAALEKTFGKTHYPDVVMRERLAMMTNLPEARIQV-WFKNRRAKF
RKKQ
[100] 'Saccoglossus kowalevskii Dmbx'
HRKQRRSRTAFTNQQLAALEKTFAKTHYPDVVMRERLAMCTNLPEARVQV-WFKNRRAKF
RKQQ
[101] 'Mus musculus Dmbx1a'
HRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQV-WFKNRRAKF
RKKQ
[102] 'Branchiostoma floridae Dmbx'
HRKQRRSRTAFTSQQLAALEKCFQKTHYPDVVMRERLAMCTNLPESRVQV-WFKNRRAKW
RKRQ
[103] 'Danio rerio Dmbx1'
QQKQRRSRTAFSVSQLQALEKAFQQTQYPDVGMRERLAVCINLPEARIQV-WFKNRRAKF
RKGQ
[104] 'Acropora digitifera DmbxB'
RRAPRRSRTAFTHQQLGILEKAFSKTHYPDVELREQLASKTNLQESRIQV-WFKNRRAKY
RKEV
[105] 'Acropora millepora DmbxB'
RRAPRRSRTAFTHQQLGILEKAFSKTHYPDVELREQLASKTNLQESRIQV-WFKNRRAKY
RKEV
[106] 'Nematostella vectensis DmbxB'
RRGSRRTRTAFTHQQLTALEKVFSKTHYPDVEVREQLATSTNLQEARIQV-WFKNRRAKY
RKDQ
[107] 'Nematostella vectensis DmbxA'
RAKHRRTRTAFTHQQLQILESTFSKTHYPDVVMREQLAAYINIPESRIQV-WFKNRRAKY
RKQV
[108] 'Nematostella vectensis DmbxC'
KKKPRRMRTCFTPYQLQVLENTFCNTHYPDVMLREQLASYVNLPEARIQV-WFKNRRAKH
RKND
[109] 'Acropora digitifera DmbxD'
GRKIRRTRTTFNQFQLETLERTFARTHYPDLMLREQLAAYTNLPESRVQV-WFKNRRAKY
RKLK
[110] 'Nematostella vectensis DmbxD'
GRKIRRTRTTFNQFQLDTLERAFSRTHYPDVLLREQLAVYTNLPESRIQV-WFKNRRAKY
RKSK
[111] 'Hydra magnipapillata Dmbx'
GRKHRRVRTAFTHHQLTTLERTFETSHYPDVVLRERLASFTGLAESRIQV-WFKNRRAKY
RKHQ
[112] 'Acropora digitifera OtxA'
PRKQRRERTTFTKAQLEILEELFTKTKYPDIFMREEVAMKINLPESRVQV-WFKNRRAKC
RQLD
[113] 'Acropora millepora OtxA'
PRKQRRERTTFTKAQLEILEELFTKTKYPDIFMREEVAMKINLPESRVQV-WFKNRRAKC
RQLD
[114] 'Acropora millepora OtxB'
PRKQRRERTTFTKAQLEILDELFAKTKYPDIFMREEVAMKINLPESRVQV-WFKNRRAKF
RQQT
[115] 'Acropora digitifera OtxB'
PRKQRRERTTFTKAQLEILDELFAKTKYPDIFMREEVAMKINLPESRVQV-WFKNRRAKF
RQQT
[116] 'Acropora digitifera OtxC'
PRKQRRERTTFTKAQLEILEELFSKTKYPDIFMREEVAMKINLPESRVQV-WFKNRRAKV
RQQS
[117] 'Nematostella vectensis OtxB'
PRKQRRERTTFTKNQLEILEELFAKTRYPDIFMREEVAIKINLPESRVQV-WFKNRRAKA
RQQA
[118] 'Nematostella vectensis OtxC'
PRKQRRERTTFTKNQLEILEELFAKTRYPDIFMREEVAIKINLPESRVQV-WFKNRRAKL
RQLS
[119] 'Nematostella vectensis OtxA'
TRKQRRERTTFTKNQLEVLEELFAKTRYPDIFMREEVAIKINLPESRVQV-WFKNRRAKT
RQLE
[120] 'Cladonema pacificum OtxB'
----RRERTTFTKSQLEILEDLFTKTHYPDIFMREEAARKINLPESRVQV----------
----
[121] 'Hydra magnipapillata OtxB'
PRKQRRERTTFTKSQLEILEELFLKTHYPDIFMREEAARKINLPESRVQV-WFKNRRAKH
RQKA
[122] 'Danio rerio OTX1b'
PRKQRRERTTFTRSQLDILEALFAKTRYPDIFMREEVALKINLPESRVQV-WFKNRRAKC
RQQQ
[123] 'Mus musculus OTX1'
PRKQRRERTTFTRSQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQV-WFKNRRAKC
RQQQ
[124] 'Danio rerio Otx2'
PRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQV-WFKNRRAKC
RQQQ
[125] 'Tribolium castaneum Otx2'
QRKQRRERTTFTRAQLDVLEALFGKTRYPDIFMREEVALKINLPESRVQV-WFKNRRAKC
RQQQ
[126] 'Drosophila melanogaster Otx'
TRKQRRERTTFTRAQLDVLEALFGKTRYPDIFMREEVALKINLPESRVQV-WFKNRRAKC
RQQL
[127] 'Branchiostoma floridae Otx'
PRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQV-WFKNRRAKC
RQQA
[128] 'Lottia gigantea Otx'
PRKQRRERTTFTRAQLDVLESLFQKTRYPDIFMREEVALKINLPESRVQV-WFKNRRAKC
RQQQ
[129] 'Ciona intestinalis OTX'
SRKQRRERTTFTRAQLDILEALFGKTRYPDIFMREEVALKINLPESRVQV-WFKNRRAKC
RQQV
[130] 'Saccoglossus kowalevskii Otx'
PRKQRRERTTFTRAQLDILESLFGKTRYPDIFMREEVALKINLPESRVQV-WFKNRRAKC
RQQE
[131] 'Tribolium castaneum Otx1'
PRKQRRERTTFTRAQLDLLEGLFAKTRYPDIFMREEVAVKINLPESRVQV-WFKNRRAKC
RQQL
[132] 'Acropora digitifera OtxD'
PRKQRRERTTFTKAQLKLLDELFAKTKYPDIFMREELALKINLPESRVQV-WFKNKRAKC
RQQT
[133] 'Hydra magnipapillata OtxA'
PRKQRRERTTFTKFQLEILDNLFKETKYPDVFMREDVARRISLPESRVQV-WFKNRRAKH
RQKS
[134] 'Cladonema pacificum OtxA'
PRKQRRERTTFTKGQLEILENLFRETKYPDVFMREDVARRISLPESRVQV-RFHL-----
----
[135] 'Hydra magnipapillata Otx1/2'
PPKRRRERTTFTKAQLDVLEDMFGKTMYPDVFMREEVAKKINLAEARVQV-WFKNRRAKF
RRSR
[136] 'Tribolium castaneum Pitx1'
TKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEARVRV-WFKNRRAKW
RKRE
[137] 'Drosophila melanogaster Ptx1'
NKRQRRQRTHFTSQQLQELEHTSSRNRYPDMSTREEIAMWTNLTEARVRV-WFKNRRAKW
RKRE
[138] 'Lottia gigantea Pitx2'
KKRQRRQRTHFTSQQLQELEATFARNRYPDMATREEISAWTNLTEARVRV-WFKNRRAKW
RKRE
[139] 'Danio rerio Pitx2'
KKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRV-WFKNRRAKW
RKRE
[140] 'Mus musculus Pitx2'
KKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRV-WFKNRRAKW
RKRE
[141] 'Danio rerio Pitx3'
KKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRV-WFKNRRAKW
RKRE
[142] 'Saccoglossus kowalevskii Pitx2'
NRRQRRQRTHFTSQQLQELEAHFARNRYPDMSTREEISAWTNLTEQRVRV-WFKNRRAKW
RKRE
[143] 'Ciona intestinalis Pitx'
KRRQRRQRTHFTSQQLQELEALFARNRYPDMSTREEISAWTNLTEARVRV-WFKNRRAKW
RKRE
[144] 'Branchiostoma floridae Pitx2'
RRRQRRQRTHFTSQQLQELEASFARNRYPDMATREEIAAWTNLTEARVRV-WFKNRRAKW
RKRE
[145] 'Trichoplax adhaerens Pitx'
KRRPRRQRTHFTSYQLQELEAAFARNRYPDMTTREEIAMWINLNESRVRV-WFKNRRAKW
RKRE
[146] 'Acropora digitifera Pitx'
KRKQRRQRTHFTSYQLQEMEAMFARNRYPDMAVREDIALWTSLTEARVRV-WFKNRRAKW
RKKE
[147] 'Acropora millepora Pitx'
KRKQRRQRTHFTSYQLQEMEAMFARNRYPDMAVREDIALWTSLTEARVRV-WFKNRRAKW
RKKE
[148] 'Nematostella vectensis Pitx'
KRKQRRQRTHFTSFQLQQLEGTFGRNRYPDMQMREEIALYTNLTEARVRV-WFKNRRAKW
RKKE
[149] 'Hydra magnipapillata Pitx'
DNRIRRQRTHFTVTQLHRLETCFARNRYPDMAMREDIAQWCSLTESRVRI-WFKNRRAKW
RKKE
[150] 'Cladonema pacificum Pitx'
DHRIRRQRTHFTVTQLQKLEACFARNRYPDMAMREDIAQWCALSESRVRV-RKHIISQTH
HQYS
[151] 'Acropora digitifera Gsc'
PKRKRRHRTIFTEEQLDLLEGTFQKTHYPDVLLREELAIKVALKEERVEV-WFKNRRAKW
RKQK
[152] 'Acropora millepora Gsc'
PKRKRRHRTIFTEEQLDLLEGTFQKTHYPDVLLREELAIKVALKEERVEV-WFKNRRAKW
RKQK
[153] 'Nematostella vectensis Gsc'
PKRKRRHRTIFTEEQLELLETTFQKTHYPDVLLREELAMKVDLKEERVEV-WFKNRRAKW
RKQK
[154] 'Lottia gigantea Gsc'
QKRKRRHRTIFTEEQLEQLENTFHKTHYPDVLLREELALKVDLKEERVEV-WFKNRRAKW
RKTK
[155] 'Branchiostoma floridae Gsc'
-RRKRRHRTIFTEEQLELLEKTFEKTHYPDVLLREELAMKVELKEERVEV-WFKNRRAKW
RKQQ
[156] 'Tribolium castaneum Gsc'
PKRKRRHRTIFSEEQLEQLEATFEQTHYPDVVLREQLALKVDLKEERVEV-WFKNRRAKW
RKQK
[157] 'Drosophila melanogaster Gsc'
PKRKRRHRTIFTEEQLEQLEATFDKTHYPDVVLREQLALKVDLKEERVEV-WFKNRRAKW
RKQK
[158] 'Ciona intestinalis Gsc'
AKRKRRHRTIFTEDQLEALENMFQKTHYPDVVMREQLAEKVELKEERVEV-WFKNRRAKW
RKQK
[159] 'Danio rerio Gsc'
CRRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEV-WFKNRRAKW
RRQK
[160] 'Mus musculus Gsc'
CRRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEV-WFKNRRAKW
RRQK
[161] 'Trichoplax adhaerens Gsc'
---KRRHRTIFTDEQIAELEKLYEQTQYPDVTMRERIAQKIDLKEERVEV-WFKNRRAKS
RKER
[162] 'Cladonema pacificum Gsc'
STNKRRQRTIFTEHQLHVLEQMFSRTHYPDVLVREEIARVIGLTEEKVEV-SFVN-----
----
[163] 'Hydra magnipapillata Gsc'
HFLKRRHRTIFSDEQLNVLERLFNKTHYPDVIVREEIAGIINLTEEKVEV-WFKNRRARW
RKQK
[164] 'Hydra magnipapillata Arx-like'
IENNKRNRTIFSKKQSCVLEDVFKKTHYPDLKCRYEISQQTKLAENRIQV-WFQNRRAKW
RRTE
;
END;

BEGIN TREES;
	Title 'Trees from "E6-PRD-164.nexus"';
  TREE 'PhyML ML tree' = [PhyML LG+G4, 100 bootstrap replicates]((((((((((('Trichoplax adhaerens 196002946':0.267028,(('Nematostella vectensis Arx':0.02949,('Acropora millepora Arx':0.0,'Acropora digitifera Arx':0.0)95:0.027426)66:0.03212,(('Oscarella carmela Arx-likeA':0.182072,'Oscarella carmela Arx-likeB':0.076275)30:0.050934,('Drosophila melanogaster Alx':0.015076,'Tribolium castaneum Alx':1.0E-6)100:0.042859)18:0.04364)7:0.018259)2:0.007952,((((((((((('Branchiostoma floridae Gsc':0.083516,('Nematostella vectensis Gsc':0.0144,('Acropora millepora Gsc':0.0,'Acropora digitifera Gsc':0.0)100:0.071801)53:2.0E-6)37:0.009957,(('Drosophila melanogaster Gsc':6.98E-4,'Tribolium castaneum Gsc':0.047434)99:0.078976,'Lottia gigantea Gsc':0.048252)23:0.034483)51:0.039931,((('Mus musculus Gsc':0.0,'Danio rerio Gsc':0.0)100:0.260558,'Ciona intestinalis Gsc':0.040393)47:0.021839,(('Hydra magnipapillata Gsc':0.152793,'Cladonema pacificum Gsc':0.350111)95:0.319212,'Trichoplax adhaerens Gsc':0.323896)21:0.078438)25:0.075598)81:0.263564,('Hydra magnipapillata Otx1/2':0.236325,(((((('Acropora millepora OtxA':0.0,'Acropora digitifera OtxA':0.0)100:0.033923,(('Cladonema pacificum OtxA':0.091297,'Hydra magnipapillata OtxA':0.035021)95:0.127798,('Hydra magnipapillata OtxB':0.035868,'Cladonema pacificum OtxB':0.004484)72:0.052264)31:0.07442)11:0.006617,'Acropora digitifera OtxC':0.023276)10:0.012534,('Acropora digitifera OtxD':0.080006,('Acropora digitifera OtxB':0.0,'Acropora millepora OtxB':0.0)98:0.015501)58:0.028685)8:0.016626,('Nematostella vectensis OtxB':0.017005,('Nematostella vectensis OtxC':0.013767,'Nematostella vectensis OtxA':0.063396)44:0.022301)64:0.051241)18:0.037721,((('Saccoglossus kowalevskii Otx':0.031719,'Lottia gigantea Otx':0.016376)33:0.015183,(('Ciona intestinalis OTX':0.047219,'Drosophila melanogaster Otx':4.0E-6)45:0.031689,'Tribolium castaneum Otx2':3.2E-5)47:0.016357)12:0.014827,('Tribolium castaneum Otx1':0.069227,(('Branchiostoma floridae Otx':0.01545,'Danio rerio Otx2':1.0E-6)35:1.0E-6,('Mus musculus OTX1':1.0E-6,'Danio rerio OTX1b':0.014787)47:0.014979)21:1.0E-6)15:2.0E-6)62:0.057824)43:0.077438)82:0.253665)20:0.071046,('Branchiostoma floridae Dmbx':0.041145,((('Lottia gigantea Dmbx1':0.037152,(((('Hydra magnipapillata Dmbx':0.20308,('Nematostella vectensis DmbxD':0.055202,'Acropora digitifera DmbxD':0.087669)98:0.224451)47:0.043112,'Nematostella vectensis DmbxC':0.35432)20:0.030694,('Nematostella vectensis DmbxB':0.120415,('Acropora millepora DmbxB':0.0,'Acropora digitifera DmbxB':0.0)100:0.13188)82:0.141381)20:0.014047,'Nematostella vectensis DmbxA':0.12533)42:0.207377)5:0.021828,'Saccoglossus kowalevskii Dmbx':4.0E-6)5:0.036186,('Danio rerio Dmbx1':0.271999,'Mus musculus Dmbx1a':2.0E-6)49:0.03572)10:0.021366)34:0.149707)11:0.083072,(((('Nematostella vectensis PaxB':0.20718,('Acropora millepora Pax6a':0.0,'Acropora digitifera Pax6a':0.0)100:0.113099)90:0.171732,('Saccoglossus kowalevskii Pax6':0.027606,('Branchiostoma floridae Pax6':0.0,('Danio rerio Pax6':0.0,'Mus musculus Pax6':0.0)38:0.0)98:0.024806)98:0.203706)35:0.093664,('Nematostella vectensis PaxC':0.112897,(('Lottia gigantea Pax6':0.284253,('Drosophila melanogaster Eyegone':0.22613,'Saccoglossus kowalevskii Eyegone':0.161215)67:0.068159)22:0.020804,'Acropora digitifera Pax6b':0.142309)61:0.058474)69:0.094603)25:0.106428,(((('Acropora millepora Pax3/7a':0.0,'Acropora digitifera Pax3/7a':0.0)100:0.145055,('Nematostella vectensis PaxD2':0.02033,('Nematostella vectensis PaxD':0.237206,('Acropora millepora Pax3/7b':0.0,'Acropora digitifera Pax3/7b':0.0)100:0.083922)88:0.127258)49:0.040325)60:0.114191,'Drosophila melanogaster Gooseberry':0.224276)40:0.059564,('Branchiostoma floridae Pax3/7':0.010348,('Lottia gigantea Pax3/7':0.135976,('Mus musculus Pax7':0.015545,'Danio rerio Pax3':0.031294)65:2.0E-6)31:0.024387)54:0.061497)40:0.054754)16:0.05336)0:0.062997,(('Nematostella vectensis Pitx':0.110896,(('Cladonema pacificum Pitx':0.422247,'Hydra magnipapillata Pitx':0.0)97:0.377123,('Acropora millepora Pitx':0.0,'Acropora digitifera Pitx':0.0)99:0.058411)33:0.034913)23:0.0475,('Trichoplax adhaerens Pitx':0.099812,(('Branchiostoma floridae Pitx2':0.035165,(('Ciona intestinalis Pitx':0.006972,'Saccoglossus kowalevskii Pitx2':0.04406)82:0.022154,'Lottia gigantea Pitx2':0.019385)48:0.015515)57:0.018022,(('Danio rerio Pitx3':0.014253,('Mus musculus Pitx2':0.0,'Danio rerio Pitx2':0.0)66:1.0E-6)74:0.031159,('Drosophila melanogaster Ptx1':0.059471,'Tribolium castaneum Pitx1':0.008239)58:0.007951)35:0.020925)56:0.018993)35:0.011593)94:0.311099)1:0.032897,(('Danio rerio Alx1':0.030796,'Mus musculus ALX1':6.0E-6)96:0.126487,('Branchiostoma floridae Alx-like':0.064729,(('Saccoglossus kowalevskii Alx':0.064663,('Acropora millepora Alx':0.0,'Acropora digitifera Alx':0.0)98:0.015655)37:2.0E-6,'Nematostella vectensis Alx':0.051199)46:1.2E-5)71:0.036569)73:0.094436)0:0.02094,((((('Hydra magnipapillata Unc4.1':0.358192,('Branchiostoma floridae Unc4':1.3E-5,('Drosophila melanogaster Unc4':0.165442,((('Mus musculus Uncx4.1':0.0,'Danio rerio Uncx4.1':0.0)100:0.070046,'Lottia gigantea Unc4.1':3.0E-6)39:0.024814,'Saccoglossus kowalevskii Unc4.1':0.061444)77:0.06915)44:0.063643)56:0.051918)21:0.025409,('Nematostella vectensis Unc4.1':0.159175,('Acropora millepora Unc4.1':0.0,'Acropora digitifera Unc4.1':0.0)100:0.064372)98:0.255127)32:0.087701,(('Nematostella vectensis Unc4c':0.019753,('Acropora millepora Unc4c':0.0,'Acropora digitifera Unc4c':0.0)100:0.033241)68:0.019989,('Saccoglossus kowalevskii Unc4c-like':0.062377,'Branchiostoma floridae Unc4c':0.08452)68:0.039239)90:0.112179)44:0.135402,'Acropora millepora 1217446':0.635317)26:7.0E-6,(((('Nematostella vectensis Rx':0.072674,('Acropora millepora Rx':0.0,'Acropora digitifera Rx':0.0)99:0.043701)42:0.009849,(('Saccoglossus kowalevskii Rx':0.015652,('Drosophila melanogaster Rx':0.0,('Danio rerio Rx1':0.0,('Mus musculus Rx':0.016349,'Tribolium castaneum Rx':0.0)4:1.0E-6)10:2.0E-6)47:0.015114)51:0.015209,('Branchiostoma floridae Rax':1.0E-6,'Lottia gigantea Rx':0.031063)30:2.0E-6)61:0.026678)96:0.211429,'Mnemiopsis leidyi PRD61':0.054367)11:0.020516,('Trichoplax adhaerens Rx':0.107946,'Hydra magnipapillata Rx':0.119012)56:0.121379)7:0.02241)0:2.0E-6)0:0.016027,'Danio rerio Arx-like':1.0E-6)0:0.015411,('Branchiostoma floridae Q50':0.016337,'Ciona intestinalis 118343665':0.047501)32:0.015014)0:2.0E-6)0:0.01757,('Oscarella carmela Arx-likeC':0.08191,(((('Cladonema pacificum ArxC':3.0E-6,('Cladonema pacificum ArxA':0.382978,'Cladonema pacificum ArxB':0.447703)32:0.105642)32:0.05421,'Cladonema pacificum ArxD':0.018655)58:0.310222,'Amphimedon queenslandica Arx-likeA':0.157597)7:4.0E-6,'Amphimedon queenslandica Arx-likeB':0.133606)6:0.016267)3:0.035541)0:2.7E-5,'Mnemiopsis leidyi PRD43':0.18115)5:0.140847,('Hydra magnipapillata Otp':0.130286,((((('Acropora millepora Otp':2.0E-6,'Acropora digitifera Otp':0.0)100:0.386119,'Cladonema pacificum Otp':0.060014)14:2.0E-6,('Drosophila melanogaster Otp':0.039385,'Saccoglossus kowalevskii Otp':0.069277)20:0.027171)0:2.0E-6,('Nematostella vectensis Otp':0.087079,(('Mus musculus OTP':0.0,'Danio rerio OtpB':0.0)85:0.032563,'Lottia gigantea Otp':0.017616)36:0.031996)1:0.016602)8:3.0E-6,('Ciona intestinalis Otp':0.167707,'Trichoplax adhaerens Otp':0.11215)37:0.032488)30:0.014628)89:0.202143)8:0.105269,(('Hydra magnipapillata Arx-like':1.063773,'Branchiostoma floridae Rx':6.0E-6)5:0.049876,'Saccoglossus kowalevskii Rx-like':0.154582)6:0.100119)6:0.2406,'Amphimedon queenslandica Arx-likeC':0.028876)72:0.676698,'Mus musculus MixerL1':0.309597)71:0.281768,'Danio rerio Mixer':0.060416)100:1.05579,'Nematostella vectensis Mixer-like':0.373721)92:0.227873,'Acropora millepora Mixer-like':2.2E-5,'Acropora digitifera Mixer-like':0.028045);
  TREE 'IQPNNI ML consensus tree' = [IQPNNI WAG+G4, 100 bootstrap replicates, relative majority consensus]('Acropora digitifera Mixer-like':0.03151,(((((('Mus musculus Pax6':0.00001,'Danio rerio Pax6':0.00001,'Branchiostoma floridae Pax6':0.00001)85:0.05952,'Saccoglossus kowalevskii Pax6':0.00001)96:0.52719,((('Acropora digitifera Pitx':0.00001,'Acropora millepora Pitx':0.00001)100:0.05658,('Hydra magnipapillata Pitx':0.03220,'Cladonema pacificum Pitx':0.51581)97:0.42579)54:0.10638,((('Danio rerio Pitx2':0.00001,'Mus musculus Pitx2':0.00001)72:0.00001,'Danio rerio Pitx3':0.01645)71:0.03535,('Tribolium castaneum Pitx1':0.01567,'Drosophila melanogaster Ptx1':0.07261)66:0.00248,((('Saccoglossus kowalevskii Pitx2':0.05582,'Ciona intestinalis Pitx':0.00001)77:0.05533,'Lottia gigantea Pitx2':0.00001)48:0.01799,'Branchiostoma floridae Pitx2':0.05378)40:0.03547)49:0.05739,'Trichoplax adhaerens Pitx':0.13043,'Nematostella vectensis Pitx':0.19319)96:0.44784,('Tribolium castaneum Alx':0.00001,'Drosophila melanogaster Alx':0.01794)93:0.16691,(((('Tribolium castaneum Rx':0.00001,'Danio rerio Rx1':0.00001,'Drosophila melanogaster Rx':0.00001)55:0.00001,'Mus musculus Rx':0.01828,'Lottia gigantea Rx':0.03538)41:0.03509,'Branchiostoma floridae Rax':0.00001,'Saccoglossus kowalevskii Rx':0.03574)52:0.02990,(('Acropora digitifera Rx':0.00001,'Acropora millepora Rx':0.00001)98:0.04608,'Nematostella vectensis Rx':0.08129)41:0.01776)89:0.28540,(('Acropora digitifera Pax6a':0.00001,'Acropora millepora Pax6a':0.00001)100:0.14320,'Nematostella vectensis PaxB':0.20309)79:0.49888,(('Acropora digitifera OtxA':0.00001,'Acropora millepora OtxA':0.00001)100:0.05953,('Hydra magnipapillata OtxA':0.05211,'Cladonema pacificum OtxA':0.10941)86:0.24125,('Cladonema pacificum OtxB':0.03000,'Hydra magnipapillata OtxB':0.03012)76:0.16393,(('Nematostella vectensis OtxC':0.01528,'Nematostella vectensis OtxA':0.07805)52:0.02581,'Nematostella vectensis OtxB':0.02140)52:0.07852,(('Acropora millepora OtxB':0.00001,'Acropora digitifera OtxB':0.00001)99:0.01924,'Acropora digitifera OtxD':0.09829)51:0.03665,(('Danio rerio OTX1b':0.01894,'Mus musculus OTX1':0.00001)44:0.01928,('Drosophila melanogaster Otx':0.00001,'Ciona intestinalis OTX':0.06156)39:0.06264,'Danio rerio Otx2':0.00001,'Tribolium castaneum Otx2':0.03952,'Branchiostoma floridae Otx':0.02033,'Lottia gigantea Otx':0.03971,'Saccoglossus kowalevskii Otx':0.08109,'Tribolium castaneum Otx1':0.08495)49:0.14502,'Acropora digitifera OtxC':0.03636,'Hydra magnipapillata Otx1/2':0.40462)78:0.74392,(('Danio rerio Gsc':0.00001,'Mus musculus Gsc':0.00001)100:0.28358,('Cladonema pacificum Gsc':0.44299,'Hydra magnipapillata Gsc':0.18611)84:0.45566,(('Acropora digitifera Gsc':0.00001,'Acropora millepora Gsc':0.00001)100:0.07643,('Tribolium castaneum Gsc':0.04362,'Drosophila melanogaster Gsc':0.00924)89:0.12055,'Nematostella vectensis Gsc':0.01683,'Lottia gigantea Gsc':0.09816,'Branchiostoma floridae Gsc':0.09580)39:0.14011,'Ciona intestinalis Gsc':0.06810,'Trichoplax adhaerens Gsc':0.42158)70:0.71452,(('Danio rerio OtpB':0.00001,'Mus musculus OTP':0.00001)96:0.07961,(('Acropora digitifera Otp':0.00001,'Acropora millepora Otp':0.00001)100:0.33109,'Nematostella vectensis Otp':0.00001)86:0.12556,('Cladonema pacificum Otp':0.02368,'Hydra magnipapillata Otp':0.12303)67:0.06641,'Lottia gigantea Otp':0.05854,'Saccoglossus kowalevskii Otp':0.09240,'Drosophila melanogaster Otp':0.10945,'Trichoplax adhaerens Otp':0.19898,'Ciona intestinalis Otp':0.25349)67:0.46248,((('Acropora digitifera Unc4.1':0.00001,'Acropora millepora Unc4.1':0.00001)100:0.10981,'Nematostella vectensis Unc4.1':0.16464)95:0.38197,(('Branchiostoma floridae Unc4c':0.09860,'Saccoglossus kowalevskii Unc4c-like':0.08449)56:0.03783,(('Acropora digitifera Unc4c':0.00001,'Acropora millepora Unc4c':0.00001)100:0.04141,'Nematostella vectensis Unc4c':0.02438)53:0.04528)78:0.25223,((('Danio rerio Uncx4.1':0.00001,'Mus musculus Uncx4.1':0.00001)98:0.08409,'Lottia gigantea Unc4.1':0.00001)46:0.04517,'Saccoglossus kowalevskii Unc4.1':0.05790)55:0.13162,'Branchiostoma floridae Unc4':0.04904,'Drosophila melanogaster Unc4':0.21594,'Hydra magnipapillata Unc4.1':0.51145)63:0.38165,((('Saccoglossus kowalevskii Eyegone':0.14184,'Drosophila melanogaster Eyegone':0.28164)60:0.09236,'Lottia gigantea Pax6':0.33671,'Acropora digitifera Pax6b':0.20728)51:0.11401,'Nematostella vectensis PaxC':0.07254)61:0.37763,(('Acropora digitifera DmbxB':0.00001,'Acropora millepora DmbxB':0.00001)100:0.19422,'Nematostella vectensis DmbxB':0.09254)61:0.89791,(('Acropora digitifera Arx':0.00001,'Acropora millepora Arx':0.00001)96:0.05355,'Nematostella vectensis Arx':0.01090)59:0.09739,(('Mus musculus ALX1':0.00001,'Danio rerio Alx1':0.03646)89:0.15982,(('Acropora digitifera Alx':0.00001,'Acropora millepora Alx':0.00001)99:0.01863,'Nematostella vectensis Alx':0.05936,'Saccoglossus kowalevskii Alx':0.07580,'Branchiostoma floridae Alx-like':0.07454)53:0.03725)55:0.15228,('Branchiostoma floridae Rx':0.09417,'Saccoglossus kowalevskii Rx-like':0.16319)52:0.33606,(('Mus musculus Dmbx1a':0.00001,'Danio rerio Dmbx1':0.32541)41:0.03728,'Lottia gigantea Dmbx1':0.05893,'Saccoglossus kowalevskii Dmbx':0.03829,'Branchiostoma floridae Dmbx':0.08816)51:0.57431,(('Danio rerio Pax3':0.03476,'Mus musculus Pax7':0.01714)77:0.00001,'Branchiostoma floridae Pax3/7':0.03526,'Lottia gigantea Pax3/7':0.15689)44:0.35711,(('Acropora digitifera DmbxD':0.17749,'Nematostella vectensis DmbxD':0.00001)97:0.16314,'Hydra magnipapillata Dmbx':0.51785)44:0.72819,(('Cladonema pacificum ArxC':0.02702,'Cladonema pacificum ArxD':0.04952,'Cladonema pacificum ArxB':0.68296)62:0.24749,'Cladonema pacificum ArxA':0.35061)42:0.36396,(('Acropora digitifera Pax3/7a':0.00001,'Acropora millepora Pax3/7a':0.00001)100:0.20106,(('Acropora digitifera Pax3/7b':0.00001,'Acropora millepora Pax3/7b':0.00001)100:0.07168,'Nematostella vectensis PaxD':0.29155)79:0.12497,'Nematostella vectensis PaxD2':0.05952)41:0.38538,'Oscarella carmela Arx-likeB':0.22399,'Danio rerio Arx-like':0.04862,'Branchiostoma floridae Q50':0.05813,'Mnemiopsis leidyi PRD61':0.16392,'Ciona intestinalis 118343665':0.10972,'Oscarella carmela Arx-likeA':0.38162,'Trichoplax adhaerens 196002946':0.34955,'Amphimedon queenslandica Arx-likeB':0.22453,'Oscarella carmela Arx-likeC':0.17542,'Mnemiopsis leidyi PRD43':0.28418,'Amphimedon queenslandica Arx-likeA':0.28723,'Amphimedon queenslandica Arx-likeC':0.58190,'Hydra magnipapillata Rx':0.33957,'Trichoplax adhaerens Rx':0.33390,'Acropora millepora 1217446':0.79328,'Drosophila melanogaster Gooseberry':0.68801,'Nematostella vectensis DmbxA':0.96893,'Nematostella vectensis DmbxC':0.93250,'Hydra magnipapillata Arx-like':1.53244)58:1.26833,'Mus musculus MixerL1':0.23273)58:0.38410,'Danio rerio Mixer':0.14058)99:1.05741,'Nematostella vectensis Mixer-like':0.39233)86:0.25938,'Acropora millepora Mixer-like':0.00001);
  TREE 'BioNJ consensus tree' = [BioNJ WAG+G4, 100 bootstrap replicates, relative majority consensus]('Acropora digitifera Mixer-like':0.03121,(((((('Mus musculus Pax6':0.00001,'Danio rerio Pax6':0.00001)98:0.00001,'Branchiostoma floridae Pax6':0.00001)97:0.05885,'Saccoglossus kowalevskii Pax6':0.00001)100:0.58064,('Tribolium castaneum Alx':0.00001,'Drosophila melanogaster Alx':0.01780)97:0.14263,(('Acropora digitifera Rx':0.00001,'Acropora millepora Rx':0.00001)98:0.05472,(('Tribolium castaneum Rx':0.00001,'Mus musculus Rx':0.01808)51:0.00001,'Danio rerio Rx1':0.00001,'Lottia gigantea Rx':0.03503,'Drosophila melanogaster Rx':0.00001,'Branchiostoma floridae Rax':0.03474,'Saccoglossus kowalevskii Rx':0.03527)63:0.07521,'Nematostella vectensis Rx':0.09231)96:0.32306,((('Hydra magnipapillata Pitx':0.03691,'Cladonema pacificum Pitx':0.49947)96:0.37943,('Acropora digitifera Pitx':0.00001,'Acropora millepora Pitx':0.00001)81:0.10872)60:0.12170,(('Saccoglossus kowalevskii Pitx2':0.05516,'Ciona intestinalis Pitx':0.00019)68:0.03563,'Lottia gigantea Pitx2':0.01714)48:0.03493,(('Danio rerio Pitx2':0.00001,'Mus musculus Pitx2':0.00001)78:0.00001,'Danio rerio Pitx3':0.01629)47:0.03502,'Tribolium castaneum Pitx1':0.01729,'Drosophila melanogaster Ptx1':0.07263,'Branchiostoma floridae Pitx2':0.09174,'Trichoplax adhaerens Pitx':0.16291,'Nematostella vectensis Pitx':0.23404)94:0.55770,(('Lottia gigantea Dmbx1':0.05389,'Saccoglossus kowalevskii Dmbx':0.01891)59:0.04194,'Mus musculus Dmbx1a':0.02682,'Branchiostoma floridae Dmbx':0.07927,'Danio rerio Dmbx1':0.33912)82:0.51582,(('Acropora digitifera Pax6a':0.00001,'Acropora millepora Pax6a':0.00001)100:0.14292,'Nematostella vectensis PaxB':0.19910)79:0.52127,(('Acropora digitifera OtxA':0.00001,'Acropora millepora OtxA':0.00001)98:0.05891,('Acropora millepora OtxB':0.00001,'Acropora digitifera OtxB':0.00001)92:0.05522,('Hydra magnipapillata OtxA':0.05120,'Cladonema pacificum OtxA':0.10816)85:0.23576,('Cladonema pacificum OtxB':0.02992,'Hydra magnipapillata OtxB':0.02938)57:0.16086,(('Danio rerio OTX1b':0.01860,'Mus musculus OTX1':0.00001)57:0.01893,'Danio rerio Otx2':0.00001,'Tribolium castaneum Otx2':0.03878,'Drosophila melanogaster Otx':0.06173,'Branchiostoma floridae Otx':0.02008,'Lottia gigantea Otx':0.03897,'Ciona intestinalis OTX':0.08487,'Saccoglossus kowalevskii Otx':0.07974,'Tribolium castaneum Otx1':0.08370)54:0.14293,('Nematostella vectensis OtxB':0.02489,'Nematostella vectensis OtxC':0.03513)50:0.07444,'Acropora digitifera OtxC':0.03605,'Nematostella vectensis OtxA':0.18031,'Acropora digitifera OtxD':0.13647,'Hydra magnipapillata Otx1/2':0.39834)77:0.74827,(('Acropora digitifera Arx':0.00001,'Acropora millepora Arx':0.00001)96:0.04957,'Nematostella vectensis Arx':0.01594)72:0.07418,(('Tribolium castaneum Gsc':0.04204,'Drosophila melanogaster Gsc':0.01034)91:0.09666,('Cladonema pacificum Gsc':0.43530,'Hydra magnipapillata Gsc':0.18728)86:0.52011,(('Acropora digitifera Gsc':0.00001,'Acropora millepora Gsc':0.00001)100:0.07611,'Nematostella vectensis Gsc':0.01114)82:0.02285,(('Danio rerio Gsc':0.00001,'Mus musculus Gsc':0.00001)100:0.31928,'Ciona intestinalis Gsc':0.00001)52:0.18236,'Lottia gigantea Gsc':0.08029,'Branchiostoma floridae Gsc':0.10626,'Trichoplax adhaerens Gsc':0.51477)70:0.60634,((('Acropora digitifera Otp':0.00001,'Acropora millepora Otp':0.00001)100:0.47871,'Cladonema pacificum Otp':0.09014)65:0.00001,('Danio rerio OtpB':0.00001,'Mus musculus OTP':0.00001)63:0.09218,'Lottia gigantea Otp':0.06853,'Saccoglossus kowalevskii Otp':0.09552,'Drosophila melanogaster Otp':0.09670,'Trichoplax adhaerens Otp':0.18078,'Ciona intestinalis Otp':0.25988,'Nematostella vectensis Otp':0.11651,'Hydra magnipapillata Otp':0.18266)67:0.46321,('Branchiostoma floridae Rx':0.10438,'Saccoglossus kowalevskii Rx-like':0.14948)65:0.35817,(('Mus musculus ALX1':0.00001,'Danio rerio Alx1':0.03611)98:0.14362,((('Acropora digitifera Alx':0.00001,'Acropora millepora Alx':0.00001)91:0.01844,'Nematostella vectensis Alx':0.05884,'Saccoglossus kowalevskii Alx':0.07502)55:0.00889,'Branchiostoma floridae Alx-like':0.06726)79:0.04858)61:0.16254,('Hydra magnipapillata Rx':0.15544,'Trichoplax adhaerens Rx':0.11402)59:0.23939,((('Acropora digitifera Unc4.1':0.00001,'Acropora millepora Unc4.1':0.00001)78:0.07299,'Nematostella vectensis Unc4.1':0.18851)97:0.34631,(('Acropora digitifera Unc4c':0.00001,'Acropora millepora Unc4c':0.00001)98:0.04281,'Branchiostoma floridae Unc4c':0.17526,'Saccoglossus kowalevskii Unc4c-like':0.12768,'Nematostella vectensis Unc4c':0.02724)85:0.18648,(((('Danio rerio Uncx4.1':0.00001,'Mus musculus Uncx4.1':0.00001)96:0.08306,'Lottia gigantea Unc4.1':0.00001)48:0.04461,'Saccoglossus kowalevskii Unc4.1':0.05745)67:0.12557,'Branchiostoma floridae Unc4':0.04427,'Drosophila melanogaster Unc4':0.20867)47:0.12826,'Hydra magnipapillata Unc4.1':0.45238)58:0.25527,(('Acropora digitifera Pax3/7a':0.00001,'Acropora millepora Pax3/7a':0.00001)100:0.19914,(('Acropora digitifera Pax3/7b':0.00001,'Acropora millepora Pax3/7b':0.00001)95:0.07084,'Nematostella vectensis PaxD':0.28644)72:0.13255,'Nematostella vectensis PaxD2':0.04883,'Drosophila melanogaster Gooseberry':0.41805)49:0.40752,((('Cladonema pacificum ArxC':0.02672,'Cladonema pacificum ArxB':0.67701)72:0.00001,'Cladonema pacificum ArxA':0.56595)64:0.04200,'Cladonema pacificum ArxD':0.02819)49:0.51636,(('Acropora digitifera DmbxD':0.10736,'Nematostella vectensis DmbxD':0.07003)95:0.29136,(('Acropora digitifera DmbxB':0.00001,'Acropora millepora DmbxB':0.00001)97:0.10686,'Nematostella vectensis DmbxB':0.18617)69:0.23788,'Nematostella vectensis DmbxA':0.23056,'Nematostella vectensis DmbxC':0.40377,'Hydra magnipapillata Dmbx':0.34077)48:0.81225,(('Saccoglossus kowalevskii Eyegone':0.15332,'Drosophila melanogaster Eyegone':0.26946)68:0.10484,'Lottia gigantea Pax6':0.32715,'Acropora digitifera Pax6b':0.21315,'Nematostella vectensis PaxC':0.15395)47:0.50944,((('Danio rerio Pax3':0.03441,'Mus musculus Pax7':0.01696)59:0.00001,'Branchiostoma floridae Pax3/7':0.03496)59:0.00001,'Lottia gigantea Pax3/7':0.15524)46:0.37005,'Oscarella carmela Arx-likeB':0.24914,'Danio rerio Arx-like':0.02106,'Branchiostoma floridae Q50':0.03873,'Mnemiopsis leidyi PRD61':0.17435,'Ciona intestinalis 118343665':0.07895,'Oscarella carmela Arx-likeA':0.34145,'Trichoplax adhaerens 196002946':0.32497,'Amphimedon queenslandica Arx-likeB':0.23256,'Oscarella carmela Arx-likeC':0.16138,'Mnemiopsis leidyi PRD43':0.25629,'Amphimedon queenslandica Arx-likeA':0.27698,'Amphimedon queenslandica Arx-likeC':0.61873,'Acropora millepora 1217446':0.85980,'Hydra magnipapillata Arx-like':1.67117)52:1.42352,('Danio rerio Mixer':0.26881,'Mus musculus MixerL1':0.48042)52:0.00001)100:1.00979,'Nematostella vectensis Mixer-like':0.39892)65:0.24625,'Acropora millepora Mixer-like':0.00001);
END;