#NEXUS [written Tue Aug 12 14:46:48 EDT 2014 by Mesquite version 2.75 (build 566) at Shayla-Salzmans-iMac-2.local/10.0.0.2] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=74; TAXLABELS Costus_afer_M10205 Costus_albiflos_M9968 Costus_allenii_M9563 Costus_amazonicus_M9036 Costus_arabicus_CS98193 Costus_asplundii_R2976 Costus_barbatus_CS01256 Costus_beckii_CS99232 Costus_bracteatus_M9409 Costus_chartaceus_WJK903124 Costus_claviger_M9306 Costus_comosus_var._bakeri_19990126011 Costus_curvibracteatus_M9381 Costus_spicatus_WJK027143 Costus_deistelii_M9298 Costus_dinklagei_TvA3549 Costus_aff._dubius_L920048 Costus_dirzoi_19960228002 Costus_dubius_M10206 Costus_erythrocoryne Costus_erythrophyllus_R2847 Costus_erythrothyrsus_M9317 Costus_gabonensis_M10291 Costus_geothyrsus_BS6782 Costus_glaucus_Delft46325 Costus_guanaiensis_var._guanaiensis_R2666 Costus_guanaiensis_var._macrostrobilus_CS00253 Costus_guanaiensis_var._tarmicus_KMN2811 Costus_laevis_CS01257 Costus_lasius_M9155 Costus_lateriflorus_M10331 Costus_letestui_CS02331 Costus_leucanthus_19961105001 Costus_aff._ligularis_19980923003 Costus_aff._ligularis_20050100003 Costus_liliaceus_M9995 Costus_lima_var._scabremarginatus_BTM750400 Costus_loangensis_M10184 Costus_longibracteolatus_R3003 'Costus lucanusianus (yellow) Breteler5297 ' Costus_maboumiensis_M10227 Costus_aff._afer_WJK943683 Costus_malortieanus_M9791 Costus_montanus_R2972 Costus_nitidus_M9524 Costus_osae_M9501 Costus_phaeotrichus_CS02323 Costus_aff._phyllocephalus_BB870057 Costus_aff._phyllocephalus_M10389 Costus_pictus_WJK943691 Costus_plicatus_WJK945376 Costus_productus_R2693 Costus_pulverulentus_WJK943680 Costus_quasiappendiculatus_CS99233 Costus_ricus_R2970 Costus_scaber_R2253 Costus_spectabilis_WJK976118 Costus_stenophyllus_L750305 Costus_aff._tappenbeckianus_20050100001 Costus_aff._tappenbeckianus_20050100002 Costus_aff._tappenbeckianus_WJK943697 Costus_talbotii_20030109009 Costus_varzearum_WJK945379 Costus_villosissimus_KMN632 Costus_vinosus_M9568 Costus_woodsonii_CS01264 Costus_zingiberoides_BTM860001 Chamaecostus_cuspidatus_RB584184 Chamaecostus_lanceolatus_pulchriflorus_RB550388 Chamaecostus_subsessilis_RB584183 Monocostus_uniflorus_WJK750065 Dimerocostus_strobilaceus_CS01272 Cheilocostus_globosus_CS02351 Tapeinochilos_queenslandia_Davis_B68168 ; END; BEGIN CHARACTERS; TITLE 'Matrix in file "ML tree of Costus_trnLF_131001.nex 3.nex"'; DIMENSIONS NCHAR=1180; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Costus_afer_M10205 ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????AAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATATGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-----------AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGA???????????????????????????????????????????????????????????????????????????????? Costus_albiflos_M9968 ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATATGTACGTATACATACTGACATATCAAACGATTA---ATGACCGSAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-----------AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCC--------------------------------------GTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-T???????????????????????????????????????????????????????????????????????????????????????????? Costus_allenii_M9563 ?????????????????GCTTT-A-GTGGGG--AACCCACT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGGTTTATATTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATATGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-AATAT-----AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAATGGT-CGGG-ATAGCTACAGTTGGTA-GAGCAGAGG Costus_amazonicus_M9036 ?????????????????GCTTT-A-GTGGGGTAAACCCACT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTA--AATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATATGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-AATAT-----AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAATGGT-CGGG-ATAGCTACAGTTGGTA-GAGCAGAGG Costus_arabicus_CS98193 ?GACTTGATTGGATTGAGCTTT-A-GTGGGG-AAACCCACT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-?TGGAATTAAAAATGGGCAATC-TGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATATGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-AATAT-----AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCA???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Costus_asplundii_R2976 ??????????????????????????????????????????????????????????????????????????????????????????????????GAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATATGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-AATAT-----AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTATATTA--ATATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-T???????????????????????????????????????????????????????????????????????????????????????????? Costus_barbatus_CS01256 ????????????????????????????????????????????????????CTTCCAAATTCAGAG-AAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATATGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-AATAT-----AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCAC??????????????????????????????????????????????? Costus_beckii_CS99232 ?GACTTGATTGGATTGAGCTTT-A-GTGGGG-AAACCCACT-AAG-TGGTAACTTCCAAATTCATAG-AAACC-CTGGAATTAAAAATGGGCAATC-TGAGCCAAATCCT-----TATTTTGAGAAAAYAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATACATACTGACATATCAAACGATTA---ATGACGGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-----------AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CTCTT-T?ATTGACATAGAC?C?AGTAC?TT??C??-----?AA?GATGC?CAGGAAATGAAATGGT-CGGG-?TAGCT-CA?TTGG???????????? Costus_bracteatus_M9409 ??????????????????????????????????????????AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGGTTTATATTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATATGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-AATAT-----AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCCCTCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAAAAT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-T-ATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAA???????????????????????????????????? Costus_chartaceus_WJK903124 ?????????????????GCTTT-A-CTGGGG-AAACCCACT-AAG-TGGTAACTTCCAAATTCAGAGTAAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATATGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-AATAT-----AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTTT-CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAA-GGT-CGGGCATAGCT-CAGTTGGTA-GAGCAGAGG Costus_claviger_M9306 ???????????????????????????????????????????????GGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATATGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-AATAT-----AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAATGGTGCGGG-ATAGCT-CAGTTGGTAAGAG?????? Costus_comosus_var._bakeri_19990126011 ?????????????????????????????????????CGCT-AAG-TGGTAACTTCCAAATTCAGAG-AAACCACTGGAATTCAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGG--CATAAATAA--GAGAGAGGAACGTTGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATACATACTGACATATCAAACGATTAATCATGACCGGAATCC------ATATATA---------TATAGTTA----------------------T----------------------------------------------------------------------AATATGAATGT-----TATAAT-TGAATGTTCT--AATATGAAAAATTCAGATA-TATAAGCGAGAGGAACGTTTCCAATAGAAGTTTCTTTAATAATAGAATATGATATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTCAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTGACTTCCTAAGTCTTTATCC-TCTTTTTTTTT-CATCAGTGGTTAGTGGTTCAGTTCAAACAAA-ATTGACTTTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTCAAATCCTTGG-----ATCTTATCCCAATTTGGATAGATACAATACCTGTACAAATGAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGTCAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACGGGAAATGAAATGGT-CGGG-ATAGCT-CA????????????????? Costus_curvibracteatus_M9381 ?????????????????GCTTT-A-GTGGGG--AACCCACT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATATGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-AATAT-----AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAATGGT-CGGG-ATAGCTACAGTTGGTA-GAGCAGAGG Costus_spicatus_WJK027143 ??????????????????????????????G-GAACCCGCT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTCAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGG--CATAAATAA--GAGAG?GGAACG?TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATAC?TACTGACATATCAAACGATTAATCATGACCGGAATCC------ATATATA---------TATA----GTTAT---------AATATGAA-------------------------------------------------------------------------------TGT-----TATAAT-TGAATGTTCT--AATATGAAAAATTCAGA-TATATAAGCGAGAGGAACGTTTCCAATAGAAGTTTCTTTAATAATAGAATATGATATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTGATAGTCAGAGGAAAATCCGTCGACTTTAGAAATCG?GAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTGACTTCCTAAGTCTTTATCC-TCTTTTTTTTT-CATCAGTGGTTAGTGGTTCAGTTCAAACAAA-ATTGACTTTACTATCTTTCTCATTCACTCTATT?TTTCACAAATGGAT-C-CGAACTCAAATCCTTGG-----ATCTTATCCCAATTTGGATAGATACAATACCTGTACAAATGAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAG?CAAATTTTTGACTACTTTTGAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACGGGAAATGAAATGGT-CGGG-ATAGCT-CAG???????????????? Costus_deistelii_M9298 ?????????????????GCTTT-A-GTGGGG--AACCCACT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCACAATGACAGAAAAGATATTCCTATATACCTAATATGTACGTATACATACTGACATATCAGACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-----------AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAR------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACWACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAATGGT-CGGG-ATAG-T-CAG-TGGTA-GAGCAGAG? Costus_dinklagei_TvA3549 ????????????????????????????????????????T-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTAAAAATGGGC?ATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATATGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-----------AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAAT???????????????????????????????????????? Costus_aff._dubius_L920048 ?????????????????GCTTT-A-GTGGG--AAACCC-CT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATATGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-----------AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA???????????????????????????????????????????????????????????????? Costus_dirzoi_19960228002 ?????????????ATGAGCTTT-A-GTGTGG--AACCCGCT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATGAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGG--CATAAATAA--GAGAGAGGAACGTTGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATACATACTGACATATCAAACGATTAATCATGACCGGAATCC------ATATATA---------TATA----GTTAT---------AATATGAA-------------------------------------------------------------------------------TGT-----TATAAT-TGAATGTTCT--AATATGAAAAATTCAGA-TATATAAGCGAGAGGAACGTTTCCAATAGAAGTTTCTTTAATAATATCATATTCTATTATTAAATCATTCATTC------TTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTCAGAGGAAAATCCGTCGACTTTAGAAATCG?GAGGGTTCAAGTCCCTC??TCCCCAATAAAAAGCCCATTTGACTTCCTAAGTCTTTATCC-TCTTTTTTTTT-CATCAGTGGTTAGTGGTTCAGTTCAAACAAA-ATTGACTTTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTCAAATCCTTGG-----ATCTTATCCCAATTTGGATAGATACAATACCTGTACAAATGAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGTCAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACGGGAAATGAAATGGT-CGGG-ATAGCT-CA????????????????? Costus_dubius_M10206 ?????????????????????????????????AACCCACT-WAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATATGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-----------AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAAKGAAAT??????????????????????????????????? Costus_erythrocoryne ??????????????????????????TGGGG-AAACCCACT-AAGCTGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATATGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-AATAT-----AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAA???????????????????????????????????? Costus_erythrophyllus_R2847 ????????????????????????????????????CCACT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTAAAAATGGGCAATCCKGASCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATATGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-----------AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAATGGT-CGGG-ATAGCT-CAG???????????????? Costus_erythrothyrsus_M9317 ??????????????TGAGCTTT-A-GTGTGG-AAACCCGCT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTCAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGG--CATAAATAA--GAGAGAGGAACGTTGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATACATACTGACATATCAAACGATTAATCATGACCGGAATCC------ATATATA---------TATAGTTA----------------------T----------------------------------------------------------------------AATATGAATGT-----TATAAT-TGAATGTTCT--AATATGAAAAATTCAGA-TATATAAGCGAGAGGAACGTTTCCAATAGAAGTTTCTTTAATAATATCATATTCTATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTCAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTGACTTCCTAAGTCTTTATCC-TCTTTTTTTT--CATCAGTGGTTAGTGGTTCAGTTCAAACAAA-ATTGACTTTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTCAAATCCTTGG-----ATCTTATCCCAATTTGGATAGATACAATACCTGTACAAATGAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGTCAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACGGGAAATGAAATGGT-CGGG-ATAGCT-CAG???????????????? Costus_gabonensis_M10291 ??????GATTGGATTGAGCTTT-A-GTGTGG-AAACCCGCT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGG--CATAAATAA--GAGAGAGGAACGTTGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATACATACTGACATATCAAACGATTAATCATGACCGGAATCC------ATATATA---------TATAGTTA----------------------T----------------------------------------------------------------------AATATGAATGT-----TATAAT-GGAATGTTCT--AATATGAAAAATTAAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTTCTTTAATAATAGAATATTCCATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAA-------CGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTGACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATCAGTGGTTAGTGGTTCAGTTCAAACAAA-ATTGACTTTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTCAAATCCTTGG-----ATCTTATCCCAATTTGGATAGATACAATACCTGTACAAATGAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCC-----------CTTAT--------ATTAGTCACATTTTTTACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACGGGAAATGAAATGGT-CGGG-ATAGCT-CA????????????????? Costus_geothyrsus_BS6782 ????????????????????????????????????????????????GTAACTTCCAAATTCAGAG-AAACC-CTGGAATGAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGG--CGTAAATAATAGAGA--GGAACGTTGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGGTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGACAAGATATTCCTATATACCTAATACGTACGTATACATACTGACATATCAAACGATTAATCATGACCGGAATCC------ATATATA---------TATA----GTTA------------------T----------------------------------------------------------------------AATATGAATGT-----TATAAT-TGAATGTTCT--AATATGAAAAATTCAGA-TATATAAGCGAGAGGAACGTTTCCAATAGAAGTTTCTTTAATAATAGAATATGATATTATTAAATCATTCATTC------TTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTCAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAAAACCCCATTTGACTTCCTAAGTCTTTATCC-TCTTTTTTTT--CATCAGTGGTTAGTGGTTCAGTTCAAACAAA-ATTGACTTTACTATCTTTCTCATTCACTCTATTCTTTCACAAAAGGAT-C-CGAACTCAAATCCTTGG-----ATCTTATCCCAATTTGGATAGATACAATACCTGTACAAATGAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTC----------TCCTTAT--------ATTAGTCAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACGGGAAATGAAAT??????????????????????????????????? Costus_glaucus_Delft46325 ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????TATTT-GAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGG--CATAAATAA--GAGAGAGGAACGTTGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATACATACTGACATATCAAACGATTAATCATGACCGGAATCC------ATATATA---------TATAGTTA----------------------T----------------------------------------------------------------------AATATGAATGT-----TATAAT-TGAATGTTCT--AATATGAAAAATTCAGA-TATATAAGCGAGAGGAACGTTTCCAATAGAAGTTTCTTTAATAATAGAATATGATATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTCAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTCTTTATCC-TCTTTTTTTT--CATCAGTGGTTAGTGGTTCAGTTCAAACAAA-ATTGACTTTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTCAAATCCTTGG-----ATCTTATCCCAATTTGGATAGATACAATACCTGTACAAATGAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGTCAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACGGGAAATGAAATGGT-CGGG-ATAGCT-CAGTTGG?A?-AGCA?AG? Costus_guanaiensis_var._guanaiensis_R2666 ??????????????????CTTT-A-GTGGGG-AAACCCACT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATATGCACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-AATAT-----AATATGCAAAATTCA-AGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACGTCCTAAGCATTTATCC-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTTTCATTCCCTC-ATTCTTTCCCAAATGGATACGCGAACTAAAATCCT-GGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAATGGT-CGGG-ATAGCTCCAGTTGGTAAGAGCAGTGG Costus_guanaiensis_var._macrostrobilus_CS00253 ????????????????????????????????????????????G-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTCAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGG--CATAAATAA--GAGAGAGGAACGTTGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATACATACTGACATATCAAACGATTAATCATGACCGGAATCC------ATATATA---------TATAGTTA----------------------T----------------------------------------------------------------------AATATGAATGT-----TATAAT-TGAATGTTCT--AATATGAAAAATTCAGA-TATATAAGCGAGAGGAACGTTTCCAATAGAAGTTTCTTTAATAATATCATATTCTATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTCAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTGACTTCCTAAGTCTTTATCC-TCTTTTTTTT--CATCAGTGGTTAGTGGTTCAGTTCAAACAAA-ATTGACTTTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTCAAATCCT-----TGGATCTTATCCCAATTTGGATAGATACAATACCTGTACAAATGAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGTCAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACGGGAAATGAAATGGT-CGGG-ATAGCTC??????????????????? Costus_guanaiensis_var._tarmicus_KMN2811 ??????????????????????????TGGGG-AAACCCACT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATATGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-AATAT-----AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAG------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAATGGT-CGGG-ATAGC-ACAGTTGGTA-GAGCAGAGG Costus_laevis_CS01257 ?????????????????GCTTT-A-GTGGGGTAAACCC-CT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGACCTACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATATGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-AATAT-----AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAATGGT-CGGG-ATAGCTACAGTTGGTA-GAGCAGAGG Costus_lasius_M9155 ??????????????????????????TGGGG--AACCCACT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATATGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGTTATAATATAATAT-AATAT-----AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAATGGT-CGGG-ATAG?????????????????????? Costus_lateriflorus_M10331 ????????TTGG---GGGCTTT-TGGTGGGG-GAACCCACT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTTTAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTATAATATGAATAATATGAAT-------------ATA-------------------------------------------------TGAATAATATGAATGT-----TATAATAT-----------AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTGACTTCCTAAGTATTTATCC-TCTTTTTTT---CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTCAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTGTGACTACTTTTTAGT-----------------------------CCCTTTTAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAATGGT-CGGG-AAAGCTTCAGTTT-TA-GA??????? Costus_letestui_CS02331 ??????????????????CTTT-A-GTGGGG-AAACCCACT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATGAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-----------AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTGACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TGACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTAGAATGAGAATGATGCACAGGAAATGAAATGGT-CGGG-ATAGCT-CAGTTGGTA-GAG?????? Costus_leucanthus_19961105001 ????????????????????????????????????????????????????CTTCCAAATTCAGAG-AAACC-CTGGAATTTAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATATGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-AATATAATATAATATGCAAAATTCARAGT-TAT-TGTGA----ATCC?TTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCMGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGT?GACTTTAGAAATCGKGAGGGTTCAAGTCCCTCYATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTTTTCATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTA?TATCTTTCTCATTCACTYTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACC?GT?CAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAA????????????????????????????????????????? Costus_aff._ligularis_19980923003 ??????????????????????????????????????????????????AACTTCCAAATTCAGAG-AAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-----------AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CTCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATG??????????????????????????????????????? Costus_aff._ligularis_20050100003 ???????????????????????????????????????CT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-----------AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CTCTT-TAATTGACATAGACAC????????????????????????????????????????????????????????????????????????????? Costus_liliaceus_M9995 ???????????GATTGAGCTTT-A-GTGGGG-AAACCCACT-AAG-TG-TA-CTTCCAAAT-CAGAG-AAACC--T-GAATGAAAAWT-GGCAAT-CTGAGCCAAATCCT-----TATTTTGAGAAA-CAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGRAAGCTGTTYTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-----------AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTGACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TGACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCC???????????????????????????????????????????????????????????????????????????????????????????????? Costus_lima_var._scabremarginatus_BTM750400 ???????????????????????A-GTGTGG-AA-CCCGCT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATGAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGG--CATAAATAA--GAGAGAGGAACGTTGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATACATACTGACATATCAAACGATTAATCATGACCGGAATCC------ATATATA---------TATA----GTTAT---------AATATGAA-------------------------------------------------------------------------------TGT-----TCTAAT-TGAATGTTCT--AATATGAAAAATTCAGA-TATATAAGCGAGAGGAACGTTTCCAATAGAAGTTTCTTTAATAATAGAATATGATATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTCAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTGACTTCCTAAGTCTTTATCC-TCTTTTTTTT--CATCAGTGGTTAGTGGTTCAGTTCAAACAAA-ATTGACTTTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTCAAATCCTTGG-----ATCTTATCCCAATTTGGATAGATACAATACCTGTACAAATGAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGTCAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACGGGAAATGAAATGGT-CGGG-ATAGCT-CAGT??????????????? Costus_loangensis_M10184 ?GACTTGATTGGATTGAGCTTT-A-GTGGGG-AAACCCACT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTTAAAATGGGCAATC-TGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-----------AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTTTTCATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTARGAAAATTTTTGACTACTTTTTAGT-----------------------------CTCTT-TAATTGACATAGACACAAGT????????????????????????????????????????????????????????????????????????? Costus_longibracteolatus_R3003 GGACTTGATTGGATTGAGCTTT-A-GTGKGG-AAACCCGCT-AAG-TGGTAACTTCCAAAT?CAGAG-AAACC-CTGGAATGAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGG--CATAAATAA--GAGAGAGGAACGTTGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATACATACTGACATATCAAACGATTAATCATGACCGGAATCC------ATATATA---------TATA----GTTAT---------AATATGAA-------------------------------------------------------------------------------TGT-----TATAAT-TGAATGTTCT--AATATGAAAAATTCAGA-TATATAAGCGAGAGGAACGTTTCCAATAGAAGTTTCTTTAATAATAGAATATGATATTATTAAATCATTCATTC------TTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTCAGAGGAAA------CGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTGACTTCCTAAGTCTTTATCC-TCTTTTTTTTT-CATCAGTGGTTAGTGGTTCAGTTCAAACAAA-ATTGACTTTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTCAAATCCTTGG-----ATCTTATCCCAATTTGGATAGATACAATACCTGTACAAATGAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGTCAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACGGGAAATGAAATGGT-CGGG-ATAGCT-CA?TTGGTA-GAGCAGAGG 'Costus lucanusianus (yellow) Breteler5297 ' ?????????????????GCTTT-A-GTGGGG--AACCCACT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACTAATGAAGCTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCACAATGACAGAAAAGATATTCCTATATACCTAATATGTACGTATACATACTGACATATCAGACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-----------AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAG------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACWACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATGGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAA???????????????????????????????????? Costus_maboumiensis_M10227 ?????TGATTGGATTGAGCTTT-AG-TGGGG-?A?CC-ACT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATATGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-----------AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATGAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTTTTCATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAATGGT-CGGG-ATAGCT-CAGTTGGTA?????????? Costus_aff._afer_WJK943683 ??????????????????CTTT-A--TGGGG-AAACCCACT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATATGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-----------AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAATGGT-CGGG??????????????????????????? Costus_malortieanus_M9791 ?????????????????????????????????????????????????????????????????AG-AAACC-CTGGAATGAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGG--CATAAATAA--GAGAGAGGAACGTTGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATACATACTGACATATCAAACGATTAATCATGACCGGAATCC------ATATATA---------TATA----GTTAT---------AATATGAA-------------------------------------------------------------------------------TGT-----TATAAT-TGAATGTTCT--AATATGAAAAATTCAGA-TATATAAGCGAGAGGAACGTTTCCAATAGAAGTTTCTTTAATAATAGAATATGATATTATTAAATCATTCATTC------TTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTCAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTGACTTCCTAAGTCTTTATCC-TCTTTTTTTT--CATCAGTGGTTAGTGGTTCAGTTCAAACAAA-ATTGACTTTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTCAAATCCTTGG-----ATCTTATCCCAATTTGGATAGATACAATACCTGTACAAATGAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTGAT--------ATTAGTCACATTTTTTACTACTTTTTAGT-----------------------------CCCTT-TAATTGGCATAGACACAAGTAC??????????????????????????????????????????????????????????????????????? Costus_montanus_R2972 ??????????????????????????TGGGG-AAACCCACT-AAG-TGGTAACTTCCAAATTCAGAGTAAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATATGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-AATAT-----AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAATCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAAGG---CGGG-ATAG?????????????????????? Costus_nitidus_M9524 ?GACTTGATTGGA-TGAGCTTT-A-GTGTGG-AAACC-G?T-AAG-TGGTAACTTCCAA-TTCAGAG-AAACC-CTGGAATGAAAAAKGG-CAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGG--CATAAATAA--GAGAGAGGAACGTTGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATACATACTGACATATCAAACGATTAATCATGACCGGAATCC------ATATATA---------TATAGTTA----------------------T----------------------------------------------------------------------AATATGAATGT-----TATAAT-TGAATGTTCT--AATATGAAAAATTCAGA-TATATAAGCGAGAGGAACGTTTCCAATAGAAGTTTCTTTAATAATAGAATATGATATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTCAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTGACTTCCTAAGTCTTTATCC-TCTTTTTTTT--CATCAGTGGTTAGTGGTTCAGTTCAAACAAA-ATTGACTTTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTCAAATCCTTGG-----ATCTTATCCCAATTTGGATAGATACAATACCTGTACAAATGAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGTCAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACGGGAA?????????????????????????????????????????? Costus_osae_M9501 ????????????????????????????????????????????????????CTTCC?AATTCAGAG-AAACC-CTGGAATTAA?AATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTAT?TACCTAATATGTACGTATACATACTGAC?TATC?AACGATTA---ATGACCGGAATCCAT----ATATATA-----------TAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-AA?AT-----?ATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTTT-CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTYTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATG??????????????????????????????????????? Costus_phaeotrichus_CS02323 ?????????????????GCTTT-A-GTGGGG-AAACCCACT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCCAT----ATATATA--GAATTAGTATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-----------AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTT---CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAATGGT-CGGG-ATAGCT-CAGTTG????????????? Costus_aff._phyllocephalus_BB870057 ?????????????????????????????????????CACT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATAC?TACTGAC?TATCAAACGATTA---ATGACCGGAATCCAT----ATATATA-----------TAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATA-G----------AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCG?GAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTTT-CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTGGACTACTTTTTAGT-----------------------------CTCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAATGGT-CGGG-ATAGCT-CA????????????????? Costus_aff._phyllocephalus_M10389 ??????????????TGAGCTTT-A-GTGTGG-AA-CCCGCT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGG--CATAAATAA--GAGAGAGGAACGTTGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATACATACTGACATATCAAACGATTAATCATGACCGGAATCCAT----ATATATA---------------TAGTTAT---------AATATGAA-------------------------------------------------------------------------------TGT-----TATAAT-TGAATGTTCT--AATATGAAAAATGAAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTTCTTTAATAATAG-----TCTATTATTAAATCATTCATTC------TTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAA-------CGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTGACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATCAGTGGTTAGTGGTTCAGTTCAAACAAA-ATTGACTTTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTCAAATCCTTGG-----ATCTTATCCCAATTTGGATAGATACAATACCTGTACAAATGAACATATATGGGCAAAGAATCTCTATTATTTAATCATTCACAGTCC-----------CTTAT--------ATGAGTCACATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACGGGAAATGAAATGGT-CGGG-ATAGCT-CAGTTGGTA-GA??????? Costus_pictus_WJK943691 ?????????????????GCTTT-A-GTGGGG-AAACCCACT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATATGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGTTATAATATAATAT-AATAT-----AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTTT-CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAATGGT-CGGG-ATAGCT-CAGTTGGTA-GAGCAGAGG Costus_plicatus_WJK945376 ?????????????????GCTTT-A-GTGGGG-AAACCCACT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTTAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-----------AATATGAAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTGACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAATGGT-CGGG-ATAGCTACAGTTGGTA-GAGCAGAGG Costus_productus_R2693 ????????????????????????????????????????T-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTCAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGG--CATAAATAA--GAGAGAGGAACGTTGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATACATACTGACATATCAAACGATTAATCATGACCGGAATCC------ATATATA---------TATA----GTTAT---------AATATGAA-------------------------------------------------------------------------------TGT-----TATAAT-TGAATGTTT---AATATGAAAAATTCAGA-TATATAAGCGAGAGGAACGTTTCCAATAGAAGTTTCTTTAATAATATCATATTCTATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTCAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTGACTTCCTAAGTCTTTATCC-TCTTTTTTTT--CATCAGTGGTTAGTGGTTCAGTTCAAACAAA-ATTGACTTTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTCAAATCCTTGG-----ATCTTATCCCAATTTGGATAGATACAATACCTGTACAAATGAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGTCAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACGGGAAATGAAATGG????????????????????????????????? Costus_pulverulentus_WJK943680 ?????????????????GCTTT-A-GTGGGG-AAACCCACT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTTAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-----------AATATGAAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTGACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAATGGT-CGGG-ATAGCTACAGTTGGTA-GAGCAGAGG Costus_quasiappendiculatus_CS99233 ?????????????????????????????????????????????????????????????????????????????????TAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATATGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-----------AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTTT-CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTYTCATTCACTCTATTCTTTC?CAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAATGGT-C?????????????????????????????? Costus_ricus_R2970 ?????????TGGATTGAGCTTT-A-GTGGGG-AAACCCACT-AAG-TKGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATATGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-AATAT-----AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAATCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAATGGT-CGGG-ATAGCT-CA????????????????? Costus_scaber_R2253 ??????????????????????????????????????ACT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATATGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-AATAT-----AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTTT-CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTYTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAATGGT-CGGG-ATA??????????????????????? Costus_spectabilis_WJK976118 ??????????????????CTTTTA-GTGGGG-AAACCCACT-AAG-TGGTAACTTCCAAATTCAG---AAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCTTATTTTATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-----------AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAAAACAAAAACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTGACTTCCTAAGTATTTATCT-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTCAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATTATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGTCCCTTTAATTGACTTGACTACTTTTTAGTCCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAATGGT-CGGG-ATAG?????????????????????? Costus_stenophyllus_L750305 ??????????????????CTTTTA-GTGGGG-AAACCCACTGAAG-TGGTAACTTCCAAATTCAGAATAAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG---T--AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATATGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-AATAT-----AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTTT-CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAATGGT-CGGG-ATAGCTCCAGTTGGTAGGAGCAGAGG Costus_aff._tappenbeckianus_20050100001 ????????????????????????????????????????????????????????CAAATTCAGAG-AAACC-CTGGAATTTAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-----------AATATGAAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTCATAATCGAATATTCAATTATGAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTGACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAAT??????????????????????????????????? Costus_aff._tappenbeckianus_20050100002 GGACTTGATTGGATTGAGCTTT-A-GTGGGG-AAACCCACT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATATAGAATTAGTATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-----------AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTCATAATCGAATATTCAATTATGAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAATGGT-CGGG-ATAGCT-CAGTTGGTA-GAGCAGAGG Costus_aff._tappenbeckianus_WJK943697 ??????????????????????????TGGGG-AAACCCACT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTTAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG---T--AATAAAT-AGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-----------AATATGAAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTGACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATC-------AG-GGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAATGGT-CGGG-ATAGCT-CAGTTGGTA-GAGCAG-GG Costus_talbotii_20030109009 ?????????????????GCTTT-A--TGGGG--AACCCACT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTCAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATATATAGTTAT---------AATATGAAT------------AATATGAA-TA----TAATA---------------------------------TGAATAATATGAATGT-----TATAATAT-----------AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTGACTTCCTAAGTATTTATCC-TCTTTTTTTTT-CATC-------AGTAGTTCAGTTCAAACAAA-AT-----TGACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTATATTAGG-TATTAGGAAAATTTTTGCCTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAATGGT-CGGG-ATAGCT-CAGTTGGTA-GAGCAGAGG Costus_varzearum_WJK945379 ??????????????????????????????????????????????TGGTAACTTCCAAATTCAGAGTAAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATATGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-AATAT-----AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAATGGT-CGGG-ATAGCT-CAGTTGGTA-GAG?????? Costus_villosissimus_KMN632 ??????????????????CTTTTA-GTGGGG-AAACCCACT-AAGCTGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATATGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-AATAT-----AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGCATTTATCC-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAATGGT-CGGG-ATAGCT-CAGTTGGTA-G???????? Costus_vinosus_M9568 ???????????????????????????????????CCCACT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTAAAAATGGGC?ATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATACATACTGACATATCAAACGATTA---ATGACGGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-----------AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTT--CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CTCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCATAGGAAATGAAATGGT-CGGG-ATAGCT-CAGTT?????????????? Costus_woodsonii_CS01264 ??????????????????CTTTTA-GTGGGG-AAACCCACT-AA--TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTAAAAATGGGCAATCCTG-GCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATATGTACGTATACATACTGACATATCAAACGATTA---ATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-AATAT-----AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCA-GTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATTTATCC-TCTTTTTTTTT-CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACAGGAAATGAAAGGG--CGGG-ATAGCT-CAGTTGGTA-GAGCGGAGG Costus_zingiberoides_BTM860001 ??????TGATTGGATGAGCTTT-A-GTGKGG-GAACC-ACT-AAG-TGGT?ACTTCCAAATTCAGAG-AAACC-CTGGAATTMAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTGGGTAGTTGGAATCCGTCTCTCAMAATGACAGAAAAGATATTCCTATATACCTAATATGYMCGTATMCATACTGACATATCARACGATTA---ATGACCGGAATCC------ATAYMTA---------TATMATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-AATAT-----AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTMTTAAATCMTTCATTCCRGARTTTGATWKRTCTTTTGAAA------AACTAAGTMATCGGACGAGAATAARGATMGAGTCCCATTYYACATGTCAATACCGACAACAATGAAATYTATRGWAAGAGGAAAATCYKTCGACTTTRGRAAKSKTGAGGGTCCWAGTCCCTCTATCCCCAAYAAAAAGCCCATTTTACTTCCTAAGYATCTATYC-TY?TTTTTTTTTCATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTYTCATTCMMTYYATTCTTTYACAAAWGGAT-C-SGAACTAAAATCCWWGSCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCAC?GGAAATGAAATGGT-CGGG-ATAGCT???????????????????? Chamaecostus_cuspidatus_RB584184 ????????????????????????????????????????????????????CTTCCAATTCCAGTG---ACC-CTGGTGTTC-GGGTGGG-AATCCTGAG-GAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAGAATTAGAATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATACATACTGACATATCAAACGATTAATCATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-----------AATATGAAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAATTGATTTCATAATCGAATATTCAATTATGAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCAGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTGACTTCCTAAGTATTTATCC-TCTTTTTTTTT--ATC-------AGTGGTTCAGTTCAAACAAA-AT-----TGACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTCAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCATAGTCCATATCATTATCCTTAT--------ATTA????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Chamaecostus_lanceolatus_pulchriflorus_RB550388 ????????????????????????????????????????????????????????????????????AAACC-CTGGAATTTAAAATGGGCAATCCTGAGCCAAATCC------TATTTTGAAAAAACAAAGG------TTTATAAAACTAGAATTAGAATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATACATACTGACATATCAAACGATTAATCATGATCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-----------AATATTCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAATTGATTTCATAATCGAATATTCAATTATGAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCAGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTTACTTCCTAAGTATCTATCC-TCTTTTTTTT---ATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATTATTCATAGTCCATATCATTATCCTTATATTAGGATATTAGGAAA--------CTACTTTT-AGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACGG????????????????????????????????????????????? Chamaecostus_subsessilis_RB584183 ??????????????????????????????????????????????????AACTTCCAAATTCAGAG-AAACC-CTGGAATTTAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAGAATTAGAATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATACGTCTCTAAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATACATACTGACATATCAAACGATTAATCATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATAT-AATATG----AATATGAAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAATTGATTTCATAATCGAATATTCAATTATGAAATAATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCAGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTGACTTCCTAAGTATTTATCC-TCTTTTTTTTT--ATC-------AGTGGTTCAGTTCAAACAAA-AT-----TGACTATCTTTCTCATTCACCCTATTCTTTCACAAATGGAT-C-CGAACTCAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCATAGTCCATATCATTATCCTTAT--------ATTAGGAAA--------CTACTTTT-AGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACGGGAAATGAAATGGT-C?????????????????????????????? Monocostus_uniflorus_WJK750065 ???????????????????????????????????????????AG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTTAAAATGGGCAATCCTGAGCCAAATCCTTATTTT-TTTTGAGAAAACAAAGG------TTTATAAAACTAGAATTAGAATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCCATATACCTAATACGTACGTATACATACTGACATATCAAACGATTAATCATGACCGGAATCCAT----ATATATA---------TATAATTAGTTAT-------------TGAAT----------------------------------------------------------------------AATATGAATGT-----TATAATA-G----------AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAATTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCAGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTGACTTCCTAAGTATTTATCC-TCTTTTTTTT---ATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAAC------AATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATTATTATCCTTAT--------ATTAGGAAA-TT-------ACTTTT-AGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACGGGAAATAAAATGGT-C?????????????????????????????? Dimerocostus_strobilaceus_CS01272 ??????????????????????????????????????GCT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAACAAAGG------TTTATAAAACTAGAATTAGAATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCCATATACCTAATACGTACGTATACATACTGACATATCAAACGATTAATCATGACCGGAATCCATAATTATATATA---------TATAATTAGTTAT----TGAATAATATGAATTAGTTATTGAATAATATGAA-------------------------------------TTAGTTATTGAATAATATGAATGT-----TATAATAT-----------AATATGCAAAATTCAGAGT-TAT-TGTGA----ATCCATTCCAATAGAAATTTATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCAGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTGACTTCCTAAGTATTTATCC-TCTTTTTTTT---ATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTTCATATCATTATCCTTAT--------ATTAGGAAA-TT-------A---------------------------------------CTTT-TAGT????????????????????????????????????????????????????????????????????????????????????????? Cheilocostus_globosus_CS02351 ?????????????????GCTTT-A-GTGGGG-AAACCCGCT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAAGCAAAGG------TTTATAAAACTAG------AATAGATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGACCTACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATACATACTGACATATCAAACGATTAATCATGACCGGAATCC------ATATATA---------TATAATTAGTTAT---------AATATGAAT------------AATATGAAATATGAATAATATGAATGTTATAATATAATATATGAAT--GTTATT-AATA-TATGAATGT-----TATAATAT-----------AATATGAAAAATTCAGAAT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTGACTTCCTAAGTATTTATC----TTTT------CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAAGATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATGATCCTTATATTAG--TATTAGGAAAATTTTTGACTACTTTTGAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACGGGAAATGAAATGGT-CGGG-ATAGCT-CAGTTGGTA-GAGCAGAGG Tapeinochilos_queenslandia_Davis_B68168 ?????????????????GCTTT-A-GTGGGT-AA-CCCGCT-AAG-TGGTAACTTCCAAATTCAGAG-AAACC-CTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCT-----TATTTTGAGAAA?CAAAGG------TTTATAAAACTAG------AATAAATAAGGATAGGTGCA---------GAGA-CTCAA---TGGAAGCTGTTCTAACGAATGAAGTTGAC-TACGTTTCGTTG-GTAGTTGGAATCCGTCTCTCAAAATGACAGAAAAGATATTCCTATATACCTAATACGTACGTATACATACTGACATATCAAACGATTAATCATGACCGGAATCCATAT--ATATATA----ATTAG----ATTAGTTAT---------AATATGAAT------------AATATGAA-T---------------GTTATAATATAAT---------------------ATATGAATGT-----TATAATAT-----------AATATGAAAAATTCAGAAT-TAT-TGTGA----ATCCATTCCAATAGAAGTTGATTTAATAATCGAATATTCAATTATTAAATCATTCATTCCAGAGTTTGATAGATCTTTTGAAA------AACTAAGTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATACCGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAATAAAAAGCCCATTTGACTTCCTAAGTATTTATC----TTTT------CATC-------AGTGGTTCAGTTCAAACAAA-AT-----TTACTATCTTTCTCATTCACTCTATTCTTTCACAAATGGAT-C-CGAACTAAAATCCTTGGCTTGGATCTTATCCCAATTTGAATAGATACAATACCTGTACAAATAAACATATATGGGCAAAGAATCTCTATTATTGAATCATTCACAGTCCATATCATTATCCTTAT--------ATTAGGAAAATTTTTGACTACTTTTTAGT-----------------------------CCCTT-TAATTGACATAGACACAAGTACTTTACTA------GAATGATGCACGGGAAATGAAATGGT-CGGG-ATAGCA-CAGTTGGTA-GAGCAGAGG ; END; BEGIN TREES; Title 'Trees from "ML tree of Costus_trnLF_131001.nex 3.nex"'; LINK Taxa = Taxa; TRANSLATE 1 Costus_afer_M10205, 2 Costus_albiflos_M9968, 3 Costus_allenii_M9563, 4 Costus_amazonicus_M9036, 5 Costus_arabicus_CS98193, 6 Costus_asplundii_R2976, 7 Costus_barbatus_CS01256, 8 Costus_beckii_CS99232, 9 Costus_bracteatus_M9409, 10 Costus_chartaceus_WJK903124, 11 Costus_claviger_M9306, 12 Costus_comosus_var._bakeri_19990126011, 13 Costus_curvibracteatus_M9381, 14 Costus_spicatus_WJK027143, 15 Costus_deistelii_M9298, 16 Costus_dinklagei_TvA3549, 17 Costus_aff._dubius_L920048, 18 Costus_dirzoi_19960228002, 19 Costus_dubius_M10206, 20 Costus_erythrocoryne, 21 Costus_erythrophyllus_R2847, 22 Costus_erythrothyrsus_M9317, 23 Costus_gabonensis_M10291, 24 Costus_geothyrsus_BS6782, 25 Costus_glaucus_Delft46325, 26 Costus_guanaiensis_var._guanaiensis_R2666, 27 Costus_guanaiensis_var._macrostrobilus_CS00253, 28 Costus_guanaiensis_var._tarmicus_KMN2811, 29 Costus_laevis_CS01257, 30 Costus_lasius_M9155, 31 Costus_lateriflorus_M10331, 32 Costus_letestui_CS02331, 33 Costus_leucanthus_19961105001, 34 Costus_aff._ligularis_19980923003, 35 Costus_aff._ligularis_20050100003, 36 Costus_liliaceus_M9995, 37 Costus_lima_var._scabremarginatus_BTM750400, 38 Costus_loangensis_M10184, 39 Costus_longibracteolatus_R3003, 40 'Costus lucanusianus (yellow) Breteler5297 ', 41 Costus_maboumiensis_M10227, 42 Costus_aff._afer_WJK943683, 43 Costus_malortieanus_M9791, 44 Costus_montanus_R2972, 45 Costus_nitidus_M9524, 46 Costus_osae_M9501, 47 Costus_phaeotrichus_CS02323, 48 Costus_aff._phyllocephalus_BB870057, 49 Costus_aff._phyllocephalus_M10389, 50 Costus_pictus_WJK943691, 51 Costus_plicatus_WJK945376, 52 Costus_productus_R2693, 53 Costus_pulverulentus_WJK943680, 54 Costus_quasiappendiculatus_CS99233, 55 Costus_ricus_R2970, 56 Costus_scaber_R2253, 57 Costus_spectabilis_WJK976118, 58 Costus_stenophyllus_L750305, 59 Costus_aff._tappenbeckianus_20050100001, 60 Costus_aff._tappenbeckianus_20050100002, 61 Costus_aff._tappenbeckianus_WJK943697, 62 Costus_talbotii_20030109009, 63 Costus_varzearum_WJK945379, 64 Costus_villosissimus_KMN632, 65 Costus_vinosus_M9568, 66 Costus_woodsonii_CS01264, 67 Costus_zingiberoides_BTM860001, 68 Chamaecostus_cuspidatus_RB584184, 69 Chamaecostus_lanceolatus_pulchriflorus_RB550388, 70 Chamaecostus_subsessilis_RB584183, 71 Monocostus_uniflorus_WJK750065, 72 Dimerocostus_strobilaceus_CS01272, 73 Cheilocostus_globosus_CS02351, 74 Tapeinochilos_queenslandia_Davis_B68168; TREE ML_tree = (43:0.011137,45:0.0,(37:0.002441,(39:0.0,(24:0.016191,((12:0.002712,25:0.002697):0.0,(14:0.007486,((52:0.002575,(18:0.006123,(22:0.0,27:0.0):0.0):0.0):0.006149,((23:0.007124,49:0.007692):0.004132,((73:0.011587,74:0.005345):0.003265,((71:0.009763,72:0.012596):0.010117,(((62:0.012354,(32:0.0,36:0.0):0.00244):0.002405,(57:0.007722,(((38:0.002605,(35:0.0,(8:0.004925,65:0.002629):0.002452):0.0):0.0,(34:0.0,48:0.00264):0.0):0.002421,(47:0.0,(60:0.004742,((46:0.0,(55:0.002486,(1:0.0,17:0.0):0.0):0.0):0.0,(11:0.0,(5:0.0,(7:0.002767,(6:0.0,(9:0.0,((41:0.002457,(20:0.0,(66:0.0,44:0.002581):4.0E-6):0.004928):0.0,(16:0.0,((30:0.0,(28:0.0,(15:0.0,40:0.007875):0.0050):0.002458):0.0,(21:0.0,(63:0.0,(3:0.0,(4:0.0,(13:0.0,(29:0.0,(50:0.0,((58:0.004863,((56:0.0,19:0.0):0.0,(42:0.0,(33:0.003181,(54:0.0,10:1.0E-6):1.0E-6):2.0E-6):1.0E-6):0.002807):0.0,(64:0.0,(2:0.0,(26:0.011003,67:0.014925):0.005916):0.0):0.005462):0.003603):0.001919):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.002642):0.0):0.0):0.00262):0.0):0.0,(31:0.022221,((59:0.0,(69:0.020858,(68:0.03204,70:0.011589):0.00532):0.011534):0.005454,(51:0.0,(53:0.0,61:0.0):0.0):0.0):0.002477):0.002713):0.005261):0.002723):0.041665):0.022023):0.004892):0.0):0.004549):0.0):0.0):0.0); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1180; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1180; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1180; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1407869209163; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 2871956064082311216; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 7427332419059549582; mqVersion 275; checksumv 0 3 588822683 null getNumChars 1180 numChars 1180 getNumTaxa 74 numTaxa 74 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 1592384.0 sumSquares -1.9830249879237765E20 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 184; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 627 1204; setLocation 1334 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #2871956064082311216 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #2871956064082311216; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 443 1137; setLocation 1334 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #2871956064082311216 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 2617.1407868589518.5310214210419977292; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 443 1137; setLocation 1334 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #7427332419059549582 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 443 1137; setLocation 1334 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;