NEXUS
[File created by TreeBASE:  7/26/07  21:13:59]
[Matrix accession#: M2831]

BEGIN TAXA;
	TITLE M2831;
	DIMENSIONS  NTAX=26;
	TAXLABELS
		Tuber_dryophilum_hr01	Tuber_candidum	Tuber_texense_xh02	Tuber_texense_wl01	Tuber_taiyuanense	Tuber_sp._mg02	Tuber_sp._mg01	Tuber_sp._hr02	Tuber_sp._hd01	Tuber_rufum_zq03	Tuber_rufum_zq02	Tuber_rufum_eu01	Tuber_rufum_AY940646	Tuber_rufum_AY112894	Tuber_rufum_AF106892	Tuber_quercicola	Tuber_nitidum	Tuber_liaotongense_mg02	Tuber_liaotongense_mg01	Tuber_liaotongense_fs04	Tuber_huidongense_pzh09	Tuber_huidongense_pzh08	Tuber_huidongense_hd01	Tuber_ferrugineum	Tuber_excavatum	Tuber_dryophilum_hr02
	;
END;

BEGIN CHARACTERS;
	TITLE M2831;
	DIMENSIONS NCHAR=258;
	FORMAT DATATYPE = DNA MISSING = ? GAP = -  ;
	MATRIX
		Tuber_dryophilum_hr01         AATCT-CCGAACGCACAT-GGCGCCCCTTGGCATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAACCCACTCATAAATATTATGGTATTGATGGAAGTGAACGGAA-CCAATCTAT---GTGTCCAG-GTCATCCCATTGAAATGTATAAGCAGGACAA-TCAACCTGTGCAATGGACTTAGTAACTGTCTTGAAAGACATAAACCAGTTTGTTGCTTGG-TT-TTGA-CTTAGCTTCCAT-GGACCTC-CAT
		Tuber_candidum                AATCT-TTGAACGCACATTG-CGCCCCTTGGTATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAACCCGCTCATAAATGTTATGGTATTGATGGAAGTGAACTGTT-GCAACTAAA---GTGTGTGGA-TCACCCCATCGAAATACATAGGCAGGACAA-CAAACCTCTGTAGCTGACTTAGTAACTGTTTTCAA-GACACAAACCAGTCACTTGCTAGG-TT-CTAG-CCTGGCCTC-ATTAGACCTC-CAT
		Tuber_texense_xh02            AATCT-TTGAACGCACATTG-CGCCCCTTGGTATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAACCCGCTCATACATATTATGGTATTGATGGAAGTGGACTGAG-CCTACTAATAATATGCTTAGAGTCACCCCATTGAAATGTATAGGCAGGACAG-TCAACCTCTGCAATGGACTTAGTAACTGTTGTGAAA-ACATAGACCAGTCCTTTGCCTGG-TT-CCAG-CCTGGCCTCCAC-GGACCTC-TAT
		Tuber_texense_wl01            AA-CTCTTGAACGCACATTG-CGCCCCT-GGTTATCCT-G-GGGCATGCCTGTTCGAGCGTCACTGCAAACCCCCTCATAGAAATTATGGTATTGATGGAAGTGAACTAAG-CCTACCAAT---TTGCTTAG-GTCACCCCATCGAAATGCATAGGCAGGACAA-TCAACCTCGGCAATGGACTTAGTAGCTGTTTTGAA-GACATGAATCAGTCCTATGCTAGG-TT-CTGG-CCTGGCCTCCAT-GGACCTC-CAT
		Tuber_taiyuanense             AATCT-CTGAACGCACATTG-CGCCCCTTGGCATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAACCCACTCATAAATATTATGGTATTGATGGAAGTGAACGGAA-CCAATCTAC---GTGTTCAG-GTCATCCCATCGAAATGTATAAGCAGGACAA-TCAACCTGTGCAATGGACTTAGTAACTGTCTTGAA-GACATAAACCAGTTTGTTGCTTGG-TT-TTGA-CTTAGCTTCCAT-GGACCTC-CAT
		Tuber_sp._mg02                AATCT-TTGAACGCACATTG-CGCCCCTTGGCATTCCTTGGGGGCATGCCTGTTCGAGCGTCACTGCAAACCCACTCATAAATATTATGGTATTGATGGAAGTGAACGGAA-CCAATCTAT---GTGTTCAG-GTCATCCCATCGAAATGTATAAGCAGGACAA-TCAACCTGTGCAATGGACTTAGTAACTGTCTTGAA-GACATAAACCAGTTTGTTGCTTGG-TT-TTGA-CTTAGCTTCCAT-GGACCTC-CAT
		Tuber_sp._mg01                AATCT-TTGAACGCACATTG-CGCCCCTTGGCATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAACCCACTCATAAATATTATGGTATTGATGGAAGTGAACGGAA-CCAATCTAT---GTGTTCAG-GTCATCCCATCGAAATGTATAAGCAGGACAA-TCAACCTGTGCAATGGACTTAGTAACTGTCTTGAA-GACATAAACCAGTTTGTTGCTTGG-TT-TTGA-CTTAGCTTCCAT-GGACCTC-CAT
		Tuber_sp._hr02                AATCT-TTGAACGCACATTG-CGCCCCTTGGCATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAACCCACTCATAAATATTATGGTATTGATGGAAGTGAACGGAA-CCAATCTAT---GTGTTCAG-GTCATCCCATCGAAATGTATAAGCAGGACAA-TCAACCTGTGCAATGGACTTAGTAACTGTCTTGAA-GACATAAACCAGTTTGTTGCTTGG-TT-TTGA-CTTAGCTTCCAT-GGACCTC-CAT
		Tuber_sp._hd01                AATCT-TTGAACGCACATTG-CGCCCCTTGGTATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAACCCACTCATAAATATTATGGTATTGATGGAAGTGAACTGAG-TCAAACAAT---GTACTTGG-GTCACCCCGTTGAAATGCATAGGCAGGACAA-TAAACCTCTGCAATGAACTTAGTAACTGTCT-GAAAGACACAAACCAGTTCCTTGTTTGGG-TGCAGA-CCTTGCTTCCAT-GGACCTC-CAT
		Tuber_rufum_zq03              AATCT-TTGAACGCACAT-GGCGCCCCTTGGTATTCCTTGAGGGCATGCCTGTTCGAGCGTCACTACAAACCCTCTCACCAACATTGTGGTATTGATGGAAGTGTACAGTG-GTTACCTAT---GTGTCCACCG-CACTCTGTTGAAATACATTGGTAGAACAA-TTGATCTTTGTAACGAACTTAGTAAATGTTTTTAGA-ACATCAATCAGTTCATTGCAAGAGTC-TTGAACCTG-CCTCCATTGGATCCC-CAT
		Tuber_rufum_zq02              AATCT-TTGAACGCACAT-GGCGCCCCTTGGTATTCCTTGAGGGCATGCCTGTTCGAGCGTCACTACAAACCCTCTCACCAACATTGTGGTATTGATGGAAGTGTACAGTG-GTTACCTAT---GTGTCCACCG-CACTCTGTTGAAATACATTGGTAGAACAA-TTGATCTTTGTAACGAACTTAGTAAATGTTTTTAGA-ACATCAATCAGTTCATTGCAAGAGTC-TTGAACCTG-CCTCCATTGGATCCC-CAT
		Tuber_rufum_eu01              AATCT-TTGAACGCACATTG-CGCCCCTTGGCATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAACCCGCTCATAAATATTATGGTAATGATGGAAGTGAAGTGAG-GACAGTAAT---GTGCCTCG-GTCACCCCATTGAAATGTATTGGCAGGACAA-TTAACCTCTGCAATGGACTTAGTAACTGTATTGAA-GACATCAATCAGTCAATAGCGAGG-TT-CTGG-CCTGGCCCCGAT-GGATTTC-CAT
		Tuber_rufum_AY940646          AATCT-TTGAACGCACATTG-CGCCCCTTGGTATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAACCCACTCATAAATATTATGGTAATGGTGGATGTGAAAGGAG-GCTACTAGT---ATGTCTC-AGTCACCCCATTGAAATACATAGGCAGGACAA-TTATCTTTAGCAAAGGACTTAGTAACTGTTATGAA-AACATATATTAGTTTCTTGCTAGGATT--TGGAC-TGACTTCTAT-GGATCTC-CAT
		Tuber_rufum_AY112894          AATCT-TTGAACGCACATTG-CGCCTCTTGGTATTCCTTGA-GGCATGCCTGTTCGAGCGTCACTGCAAACCTACTCATAACTATTATGGTAATGGTGGATGTGAAGAGAG-GCTACTAAT---ATGTCTC-AGTCACCCCATTGAAATATATAGGCAGGACAA-TTATCTTTAGCAAAGAACTTAGTAACTGTTTTGAA-GACATATATTAGTTTCTTGCTAGGACT--TGGAC-TGACTTCTAT-GGATCTC-CAT
		Tuber_rufum_AF106892          AATCT-TTGAACGCACATTG-CGCCCCTTGGCATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAACCCGCTCATAAATATTATGGTAATGATGGAAGTGAAGTGAG-GACAGTAAT---GTGCCTCG-GTCACCCCATTGAAATGTATTGGCAGGACAA-TTAACCTCTGCAATGGACTTAGTAACTGTTTTGAA-GACATCAATCAGTCAATTGCGAGG-TT-CTGG-CCTGGCCCCGAT-GGATTTC-CAT
		Tuber_quercicola              AATCT-TTGAACGCACATTG-CGCCCCTTGGTATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAACCCACTCATAAATATTATGGTACTGATGGAAGTGAACCCTG-GGCACTAAT---ATGCCTAGA-TCATTCCATTGAAATGCATAGGCGGGACGA-TCAACCTTCGCAACTGACTTAGTAACTGTTTTCAA-GACAAAAACCAGTCACTTGCACGG-TT-CCAG-CCCAGCCTCCAT-GGACCTCGCAT
		Tuber_nitidum                 AATCT-TTGAACGCACATTG-CGCCCCTTGGTATTCCTTGAGGGCATGCCTGTTCGAGCGTCACTGCAAACCCCATCATAGAAATTATGGTATTGATGGAAGTGAACTGAG-CCTACCAAT---ATGCCCAG-GTTACCCCATTGAAATGCATAGGCAGGACAA-TTAACCTCTGCAATGGACTTAGTAGCTGTTTTGAAA-ACATGAACCAGTCCCTTGCTAGG-TT-CCAG-CCTGGCCTCCAC-GGACCTC-CAT
		Tuber_liaotongense_mg02       A-TCT-TTGAACGCACATTGGCGCCCCTTGGCATTCCT-GGGGGCATGCCTGTTCGAGCGTCACTGCAAACCCACTCATAAATATTATGGTATAGATGGAAGTGAACGGAA-CCAATCTAT---GTGTTCAG-GTCATCCCATCGAAATGTATAAGCAGGACAA-TCAACCTGTGCAATGGACTTAGTAACTGTCTTGAAAGACATAAACCAGTTTGTTGCTTGG-TT-TAGA-CTTAGCTTCCAT-GGACCTC-CAT
		Tuber_liaotongense_mg01       AATCT-TTGAACGCACATTG-CGCCCCTTGGCATTCCTTGGGGGCATGCCTGTTCGAGCGTCACTGCAAACCCACTCATAAATATTATGGTATTGATGGAAGTGAACGGAA-CCAATCTAT---GTGTTCAG-GTCATCCCATCGAAATGTATAAGCAGGACAA-TCAACCTGTGCAATGGACTTAGTAACTGTCTTGAAAGACATAAACCAGTTTGTTGCTTGG-TT-TTGA-CTTACCTTCCAT-GGACCTC-CAT
		Tuber_liaotongense_fs04       AATCT-TTGAACGCACATTG-CGCCCCTTGGCATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAACCCACTCATAAATATTATGGTATTGATGGAAGTGAACGGAA-CCAATCTAT---GTGTTCAG-GTCATCCCATCGAAATGTATAAGCAGGACAA-TCAACCTGTGCAATGGACTTAGTAACTGTCTTGAA-GACATAAACCAGTTTGTTGCTTGG-TT-TTGA-CTTAGCTTCCAT-GGACCTC-CAT
		Tuber_huidongense_pzh09       AATCT-TTGAACGCACATTG-CGCCCCTTGGTATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAACCCACTCATAAATATCATGGTATTGATGGAAGTGAACTGAG-TCAAACAAT---GTACTTGGG-TCACCCCGTTGAAATGCATAGGCAGGACAA-TAAACCTCTGCAATGAACTTAGTAACTGTCT-GAAAGACACAAACCAGTTCCTTGTTGGG-TT-CAGA-CCTTGCTTCCAT-GGACCTC-CAT
		Tuber_huidongense_pzh08       AATCT-TTGAACGCACATTG-CGCCCCTTGGTATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCATACCCACTCATAAATATCATGGTATTGATGGAAGTGAACTGAG-TCAAACAAT---GTACTTGGG-TCACCCCGTTGAAATGCATAGGCAGGACAA-TAAACCTCTGCAATGAACTTAGTAACTGTCT-GAAAGACACAAACCAGTTCCTTGTTGGG-TT-CAGA-CCTTGCTTCCAT-GGACCTC-CAT
		Tuber_huidongense_hd01        AATCT-TTGAACGCACATTG-CGCCCCTTGGTATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAACCCACTCATAAATATTATGGTATTGATGGAAGTGAACTGAG-TCAAACAAT---GTACTTGGGGTCACCCCGTTGAAATGCATAGGCAGGACAA-TAAACCTGTACAATGAACTTAGTAACTGTCT-GAAAGACACAAACCAGTTCCTTGTTGGG-TTACAGA-CCTTGCTTCACT-G-ACCTC-CAT
		Tuber_ferrugineum             AATCT-TTGAACGCACATTG-CGCCCCTTGGCATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAACCCGCTCATAAATATTATGGTAATGATGGAAGTGAAGTGAG-GACAGTAAT---GTGCCTCG-GTCACCCCATTGAAATGTATTGGCAGGACAA-TTAACCTCTGCAATGGACTTAGTAACTGTTTTGAA-GACATCAATCAGTCAATTGCGAGG-TT-CTGG-CCTGGCCCCGAT-GGATTTC-CAT
		Tuber_excavatum               AATCT-TTGAACGCACATTG-CGCCCTTTGGCATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAGCAACCTCCTCACGGATCCCGTGGTAATGGCGGAAGCTTTCGCTGTTGTCCCTTGGACAGCGGTGCAGCTCCGCTGAAATGAATAAGCAGGACAAAAACAGGCCCCGGCGA-GCGACTTAGTAAGTGTCGTGAA-GACGTAGACCAGTCAGCAGCCAGGCCTTGCCCTGCCCACCCAGATCTCCCCCGTCTG
		Tuber_dryophilum_hr02         AATCTTTGCAACGCACATTG-CGCCCCTTGGCATTCCTGG-GGGCATGCCTGTTCGAGCGTCACTGCAAACCCACTCATAAATATTATGGTATTGATGGAAGTGAACGGAAACCAATCTAT---GTGTTCAG-GTCATCCCATTGAAATGTATAAGCAGGACAA-TCAACCTGTGCAATGGACTTAGTAACTGTCTTGAAAGACATAAACCAGTTTGTTGCTTGG-TT-TTGA-CTTAGCTTCCAT-GGACCTC-CAT
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 258 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;