NEXUS
[File created by TreeBASE:  7/26/07  21:13:59]
[Matrix accession#: M2833]

BEGIN TAXA;
	TITLE M2833;
	DIMENSIONS  NTAX=24;
	TAXLABELS
		Tuber_texense_xh02	Tuber_texense_xh01	Tuber_taiyuanense_bj02	Tuber_taiyuanense_bj01	Tuber_sp._mg02	Tuber_sp._mg01	Tuber_rufum_eu01	Tuber_rufum_AY940646	Tuber_rufum_AY112894	Tuber_rufum_AF106892	Tuber_quercicola	Tuber_liaotongense_mg02	Tuber_liaotongense_mg01	Tuber_liaotongense_fs04	Tuber_liaotongense_fs01	Tuber_huidongense_pzh09	Tuber_huidongense_pzh08	Tuber_huidongense_hd01	Tuber_ferrugineum	Tuber_excavatum	Tuber_dryophilum	Tuber_candidum	Tuber_californicum	Tuber_borchii
	;
END;

BEGIN CHARACTERS;
	TITLE M2833;
	DIMENSIONS NCHAR=243;
	FORMAT DATATYPE = DNA MISSING = ? GAP = -  ;
	MATRIX
		Tuber_texense_xh02            CACAAACCCTCTCTGCGTATCAATCCATGT-TGCTTT-CCCAGG-TG---------------------------CTCGCT--------------------------CTCCTGGG-AGAGGGCCTATCCATAGCG-AAT-TA-TTGAATCAGCTGTCTGAGTTGGCCCAGTGCCATATTC--TTTGAATAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAG
		Tuber_texense_xh01            CACAAACCCTCTCTGCGTATCAATCCATGT-TGCTTT-CCCAGG-TG---------------------------CTCGCT--------------------------CTCCTGGG-AGAGGGCCTATCCATAGCG-AAT-TA-TTGAATCAGCTGTCTGAGTTGGCCCAGTGCCATATTC--TTTGAATAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAG
		Tuber_taiyuanense_bj02        CACAAACCCTCTCTGCGTATCAATCCATGT-TGCCTT-CCCCGGGTG---------------------------CTCGCT--------------------------CTCCTGGG-AGAGGGCCTATCCATAGCG-AAT-TA-TTGAATCAGCTGTCTGAGTTGGCCCAGTGCCATATTC--TTTGAATAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAG
		Tuber_taiyuanense_bj01        TC------------------CAATCCATGT-TGCTTT-CCCAGG-TGTTTGGT-----------------------------------------------------CATCTGGG-AAAGTGTCCTTTCAAAACG-AAT-TA-TTGAATCAGCTGTCTGAGTTGGCCCAGTGCCTTATTC--TTTAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAG
		Tuber_sp._mg02                TC------------------CAATCCATGT-TGCTTT-CCCAGGGTGTTTGGT-----------------------------------------------------CATCTGGG-AAAGTGTCCTTTCAAAACG-AAT-TA-TTGAATCAGCTGTCTGAGTTGGCCCAGTGCCTTATTC--TTTAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAG
		Tuber_sp._mg01                TC------------------CAATCCATGT-TGCTTT-CCCAGG-TGTTTGGT-----------------------------------------------------CATCTGGG-AAAGTGTCCTTTCAAAACG-AAT-TA-TTGAATCAGCTGTCTGAGTTGGCCCAGTGCCTTATTC--TTTAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAG
		Tuber_rufum_eu01              TACAAACCCTCTCTGTGTACCAATCCATGT-TGCTTT-CCCAGG-TGGTTGGTTTCAGTTGATGTCCAATCCTGCATGCTAGCTGAGTTAATATCACTAAGTGGGT-CCCTGGG-AAAGGGCCTTACCAATGC-AAA-C-ATTTGAATCAGCCGTCTGAGTTGGCCCAGTGCCGTATTA--TTTGAATAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAG
		Tuber_rufum_AY940646          CCCAAATCCTCTTTGTGTACTTATCCATGT-TGCTTT-CCCAGG-TGGTTGGTTTTACTAGTTGTTTAACCCTTCCTGCTAGTTGAGTTAACTTTACTATGTAGG-CTCCTGGG-AGAGGGCCTATTTCAAGC-AAA-CTA-TTAAATCAGTTGTCTGAGTTGGCCTAGTGTCATATCTT-TTTAAATAAATTAAAACTTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAG
		Tuber_rufum_AY112894          CCCAAATCCTCTTTGTGTACTTATCCATGT-TGCTTT-CCCAGG-TGGTTGGTTTTACTAGTTGTTTAACCCTTCCTGCTAGTTGAATTTACTTTACTATGTAGG-CTCCTGGG-AGAGGGTCTGTTCAAAGC-AAA-CTA-TTGAATCAGCAGTCTGAGTTGGCCCAGTGCCATATTTT-TTTGAATGAATTAAAACTTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAG
		Tuber_rufum_AF106892          TACAAACCCTCTCTGTGTACCAATCCATGT-TGCTTT-CCCAGG-TGGTTGGTTTCAGTTGATGTCCAATCCTGCATGCTAGCTGAGTTAATATCACTAAGTGGGT-CCCTGGG-AAAGGGCCTTACCAATGC-AAA-C-ATTTGAATCAGCCGTCTGAGTTGGCCCAGTGCCGTATTA--TT-GAATAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAG
		Tuber_quercicola              GCTA-----TTATTGAAACTTGGAACCTGA-CACTTT-CCCGATAGTGTGAGCTTTAATGAGTCAGCAAGCTCAATTGTTATCCGTCGGGATGAGCTATTC-AGGT-CCCTGGG-AAAGGGCCTATCCAAAGTT-AA-C-ACTTCAATCAGCTGTCTGAGTTGGCCGAGTGCCATATTC--TTTGAACAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAG
		Tuber_liaotongense_mg02       TCTGAACACTTTCTGCGTACCAATCCAGGT-TGCTTT-CCCAGG-TGTTTGGT-----------------------------------------------------CATCTGGG-AAAGTGTCCTTTCAAAACG-AAT-TA-TTGAATCAGCTGTCTGAGTTGGCCCAGTGCCTTATTC--TTTAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAG
		Tuber_liaotongense_mg01       TCTGAACACTTTCTGCGTACCAATCCAGGT-TGCTTTTCCCAGG-TGTTTGGT-----------------------------------------------------CATCTGGGGAAAGTGTCCTTTCAAAACG-AAT-TA-TTGAATCAGCTGTCTGAGTTGGCCCAGGGCCTTATTC--TTTAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAG
		Tuber_liaotongense_fs04       TC------------------CAATCCATGT-TGCTTT-CCCAGG-TGTTTGGT-----------------------------------------------------CATCTGGG-AAAGTGTCCTTTCAAAACG-AAT-TA-TTGAATCAGCTGTCTGAGTTGGCCCAGTGCCTTATTC--TTTAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAG
		Tuber_liaotongense_fs01       TC------------------CAATCCATGT-TGCTTT-CCCAGG-TGTTTGGT-----------------------------------------------------CATCTGGG-AAAGTGTCCTTTCAAAACG-AAT-TA-TTGAATCAGCTGTCTGAGTTGGCCCAGTGCCTTATTC--TTTAAATAAGTTAAA-CTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAG
		Tuber_huidongense_pzh09       TCTAAACTCCCTCTGTGTACCAATCCATGT-TGCTTT-CCCAGA-TG------------------------------------------------------CGGGTCATCTGGG-AAAGGATCTCTT-AAAACCAAATCAA-TTGAATCAGCTGTCTGAGTTGGCCCAGTGCCATATATGGTTTAAACAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAG
		Tuber_huidongense_pzh08       TCTAAACTCCCTCTGTGTACCGATCCATGT-TGCTTT-CCCAGA-TG------------------------------------------------------CGGGTCATCTGGG-AAAGGATCTCTT-AAAACCAAATCAA-TTGAATCAGCTGTCTGAGTTGGCCCAGTGCCATATATGGTTTAAACAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAG
		Tuber_huidongense_hd01        TCTAAACTCCCTCTGTGTACCAATCCATGT-TGCTTT-CCCAGA-TG------------------------------------------------------CGGGTCATCTGGG-AAAGGATCTCTT-AAAACCAAATCAA-TTGAATCAGCTGTCTGAGTTGGCCCAGCGCCATATATGGTTTAAACAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAG
		Tuber_ferrugineum             TACAAACCCTCTCTGTGTACCAATCCATGT-TGCTTT-CCCAGG-TGGTTGGTTTCAGTTGATGTCCAATCCTGCATGCTAGCTGAGTTAATATCACTAAGTGGGT-CCCTGGG-AAAGGGCCTTACCAATGC-AAA-C-ATTTGAATCAGCCGTCTGAGTTGGCCCAGTGCCGTATTA--TTTGAATAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAG
		Tuber_excavatum               GTCCC-------CGAGATCAAACCTCCCCGAGTACCCATCCATGTTGCTTCCCTAGGCCAGCAGCCATTGCTGCCCGTCCGACCCTGCCCGGTCACAGGACGGAGGTGCCTGGG-GAGGGGCCCAACCAAAAAGGAAACTATTGCACACAGCTGTCTGAGTTGGCCACGTGTCCAGTGA--ATTGAGCAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAG
		Tuber_dryophilum              TC------------------CAATCCATGT-TGCTTT-CCCAGG-TGTTTGGT-----------------------------------------------------CATCTGGG-AAAGTGTCCTTTCAAAACG-AAT-TA-TTGAATCAGCTGTCTGAGTTGGCCCAGTGCCTTATTC--TTTAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAG
		Tuber_candidum                GTTAA-------CTTGGAGTTTGATCT-ATTTTACTGATGGGTTAAGCTTTAAT-GGG--TCAG-C-GAGCTTAAT-TTATATCTATCAGGATCAGC-TATGTAGGCCCCTGGG-AAAGGGTCCATCGC-AAGTGAA--TATTTCAATCAGCTGTCTGAGTTGGCCGAGTGCCATATTC--TTTGAACAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAG
		Tuber_californicum            TC------------------CAATCCATGT-TGCTTT-CCCAGG-TGTTTGGT-----------------------------------------------------CATCTGGG-AAAGTGTCCTTTCAAAACG-AAT-TA-TTGAATCAGCTGTCTGAGTTGGCCCAGTGCCTTATTC--TTTAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCAATGAAGAACGCA-
		Tuber_borchii                 TC------------------CAATCCATGT-TGCTTT-CCCAGG-TGTTTGGT-----------------------------------------------------CATCTGGG-AAAGTGTCCTTTCAAAACG-AAT-TA-TTGAATCAGCTGTCTGAGTTGGCCCAGTGCCTTATTC--TTTAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCAATGAAGAACGCA-
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 243 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;