#NEXUS [MacClade 4.05 registered to Susumu Takamatsu, Faculty of Bioresources, Mie University] BEGIN DATA; DIMENSIONS NTAX=6 NCHAR=591; FORMAT DATATYPE=DNA MISSING=? GAP=- INTERLEAVE ; MATRIX [ 10 20 30 40 50 60 70 80 90 100] [ . . . . . . . . . .] Phyllactinia_moricola_ex_Morus_AB080540 CTGAGCGTGAAGACTCTCGGTCCCCCGCCCCATTGG-TGCAAGCCAGTGCGAGGGGGG-----AGCATGGCCGGAGTCGACCCTCCCACCCGTGTCGATA [94] Phyllactinia_pyri_serotinae_ex_Aria_MUMH3511 -----CGTGaAGAcTCTCGGGcCCCCCA--GCCATGGCGCAAGCCAGTGCGGCGAGGGGGGGGAATCATGCCGGAGTCGACCCTCCCACCCGTGTCGATG [93] Phyllactinia_pyri_serotinae_ex_Pyrus_AB080521 CTGAGCGTGAAGACTCTCGGGCCCCCCC--GCCATGGCGCAAGCCAGTGCGGCGAGGGGGGCGAATCATGCCGGAGTCGACCCTCCCACCCGTGTCGATG [98] Phyllactinia_mali_ex_Crataegus_AB080523 CAGAGCGTGAAGACTCTCGGCCCCCTCCCATCCATGGCGCAAGCCGGTGCGAAGGCAGGGG--AAACATGCCGGAGTCGACCCTCCCACCCGTGTCGATG [98] Phyllactinia_mali_ex_Mespilus_AB080556 CAGAGCGTGAAGACTTT-GGCCCCCTCCCATCCATGGCGCAAGCCGGTGCGAAGGCAGGGGG-AAACATGCCGGAGTCGACCCTCCCACCCGTGTCGATG [98] Phyllactinia_mali_ex_Crataegus_AB080559 CAGAGCGTGAAGACTCTCGGCCCCCTCCCATCCATGGCGCAAGCCGGTGCGAAGGCAGGGGG-AAACATGCCGGAGTCGACCCTCCCACCCGTGTCGATG [99] [ 110 120 130 140 150 160 170 180 190 200] [ . . . . . . . . . .] Phyllactinia_moricola_ex_Morus_AB080540 AAAACGTCTGTTGCTTTGGTAGGCCGGGGCCCGCCTGGCGGATCCCGCTGGCCTTTGAT--GGCTGGAGCGTGCCTGCCAGAGAAA-GTTGGACAA-TCG [190] Phyllactinia_pyri_serotinae_ex_Aria_MUMH3511 TTATCTCCTGTTGCTTTGGTGGGCCGGGGGCCGCCTAGCGGACCCCGCTGGCCCTGCGC-GGGCTAGAGCGTGCCTGCCAGAGAAA-TCTTGACAACTCG [191] Phyllactinia_pyri_serotinae_ex_Pyrus_AB080521 TTATCTCCTGTTGCTTTGGTGGGCCGGGGGCCGCCTAGCGGACCCCGCTGGCCCTGCGC-GGGCTAGAGCGTGCCTGCCAGAGAAA-TCTTGACAA-TCG [195] Phyllactinia_mali_ex_Crataegus_AB080523 TTATCTCCTGTTGCTTTGGTGGGCCGGGGGCCGCCTAGCGGACCCCGCTGGCCCTGCGAGGGGCTAGAGCGTGCCTGCCAGAGAAAATTTTGACAA-TCG [197] Phyllactinia_mali_ex_Mespilus_AB080556 TTATCTCCTGTTGCTTTGGTGGGCCGGGGGCCGCCTAGCGGACCCCGCTGGCCCTGCGAGGGGCTAGAGCGTGCCTGCCAGAGAAAATTTTGACAA-TCG [197] Phyllactinia_mali_ex_Crataegus_AB080559 TTATCTCCTGTTGCTTTGGTGGGCCGGGGGCCGCCTAGCGGACCCCGCTGGCCCTGCGAGGGGCTAGAGCGTGCCTGCCAGAGAAAATTTTGACAA-TCG [198] [ 210 220 230 240 250 260 270 280 290 300] [ . . . . . . . . . .] Phyllactinia_moricola_ex_Morus_AB080540 TGTGATT-GATGAAGTCTGAGCAA---CC-AAGTGGGAAA------TT-AGTTAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACG [278] Phyllactinia_pyri_serotinae_ex_Aria_MUMH3511 TTTGATTTGAGGAAGTCTGAGCAA-CCCCAGTGGGGGAACACACAATTTAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACG [290] Phyllactinia_pyri_serotinae_ex_Pyrus_AB080521 TTTAATTTGAGGAAGTCTGAGCAAGCCCCCATGGGCGAACACACAATTTAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACG [295] Phyllactinia_mali_ex_Crataegus_AB080523 TTTGATTGGAGGAAGTCTGAGCA-GCCCCAGTGGGGGAACACACAATTTAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACG [296] Phyllactinia_mali_ex_Mespilus_AB080556 TTTGATTGGAGGAAGTCTGAGCA-GCCCCAGTGGGGGAACACACAATTTAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACG [296] Phyllactinia_mali_ex_Crataegus_AB080559 TTTGATTGGAGGAAGTCTGAGCA-GCCCCAGTGGGGGAACACACAATTTAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACG [297] [ 310 320 330 340 350 360 370 380 390 400] [ . . . . . . . . . .] Phyllactinia_moricola_ex_Morus_AB080540 CAGCGAAATGCGATAAGTAATGTGAATTGCAGAATCTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTT [378] Phyllactinia_pyri_serotinae_ex_Aria_MUMH3511 CAGCGAAATGCGATAAGTAATGTGAATTGCAGAATCTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTT [390] Phyllactinia_pyri_serotinae_ex_Pyrus_AB080521 CAGCGAAATGCGATAAGTAATGTGAATTGCAGAATCTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTT [395] Phyllactinia_mali_ex_Crataegus_AB080523 CAGCGAAATGCGATAAGTAATGTGAATTGCAGAATCTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTT [396] Phyllactinia_mali_ex_Mespilus_AB080556 CAGCGAAATGCGATAAGTAATGTGAATTGCAGAATCTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTT [396] Phyllactinia_mali_ex_Crataegus_AB080559 CAGCGAAATGCGATAAGTAATGTGAATTGCAGAATCTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTT [397] [ 410 420 430 440 450 460 470 480 490 500] [ . . . . . . . . . .] Phyllactinia_moricola_ex_Morus_AB080540 CGAGCGTCAAAACAACCCCTCAAGTCGCTCTGGCTTGGTCTTGGGGCCCGCCCGCGACAGCGTGGCGGCCCTTAAATCTAGTGGCGGTGCCGGTGGTGCT [478] Phyllactinia_pyri_serotinae_ex_Aria_MUMH3511 CGAGCGTCAAAACAACCCCTCAAGCCAGTCTGGCTTGGTCTTGGGGTCCGCCCGCGGCTGCGCGGCGGCCCTTAAAGCCAGTGGCGGTACCGGTAGTGCT [490] Phyllactinia_pyri_serotinae_ex_Pyrus_AB080521 CGAGCGTCAAAACAACCCCTCAAGCCAGTCTGGCTTGGTCTTGGGGTCCGCCCGCGGCTGCGCGGCGGCCCTTAAAGCCAGTGGCGGTACCGGTAGTGCT [495] Phyllactinia_mali_ex_Crataegus_AB080523 CGAGCGTCAAAACAACCCCTCAAGCCAGTCTGGCTTGGTCTTGGGGTCCGCCCGCGGCTGTGCGGCGGCCCTTAAATCCAGTGGCGGTACCGGTAGTGCT [496] Phyllactinia_mali_ex_Mespilus_AB080556 CGAGCGTCAAAACAACCCCTCAAGCCAGTCTGGCTTGGTCTTGGGGTCCGCCCGCGGCTGCGCGGCGGCCCTTAAATCCAGTGGCGGTACCGGTAGTGCT [496] Phyllactinia_mali_ex_Crataegus_AB080559 CGAGCGTCAAAACAACCCCTCAAGCCAGTCTGGCTTGGTCTTGGGGTCCGCCCGCGGCTGCGCGGCGGCCCTTAAATCCAGTGGCGGTACCGGTAGTGCT [497] [ 510 520 530 540 550 560 570 580 590] [ . . . . . . . . . ] Phyllactinia_moricola_ex_Morus_AB080540 CTCCGTGTAGTCACGTTCTCGCGACAGGGCAGCACTGGACCCAGCCAAAA--GACA-AC-C-TG-TGCGTCTGTCGCACGCTATCT-ATGG [562] Phyllactinia_pyri_serotinae_ex_Aria_MUMH3511 CTCCGCGTAGTCACGATCTCGCGGCAGGGTGGCACTGGATCCAGCCAGAAGACGATGACGCCGCCCTCGGTGCGGTGTCTGTTTCACATGG [581] Phyllactinia_pyri_serotinae_ex_Pyrus_AB080521 CTCCGCGTAGTCACGATCTCGCGGCAGGGTAGCACTGGATCCAGCCAGAAGACGATGACGCCGCCTTCGGTGCGGTGTCTGTTTCA-ATGG [585] Phyllactinia_mali_ex_Crataegus_AB080523 CTCCGCGTAGTCACGATCTCGCGATAGGGTGGCGCTGGATCCAGCCAGAAGACGA?GACGCCGCCCCTGTGCGGTGCCTTCTTTCA-ATGG [586] Phyllactinia_mali_ex_Mespilus_AB080556 CTCCGCGTAGTCACGATCTCGCGATAGGGTGGCGCTGGATCCAGCCAGAAGACGACGACGCCGCCTTTGTGCGGTGCCTTCTTTCA-ATGG [586] Phyllactinia_mali_ex_Crataegus_AB080559 CTCCGCGTAGTCACGATCTCGCGATAGGGTGGCGCTGGATCCAGCCAGAAGACGACGACGCCGCCTT-GTGCGGTGCCTTCTTTCA-ATGG [586] ; END; BEGIN TREES; TRANSLATE 1 Phyllactinia_moricola_ex_Morus_AB080540, 2 Phyllactinia_pyri_serotinae_ex_Aria_MUMH3511, 3 Phyllactinia_pyri_serotinae_ex_Pyrus_AB080521, 4 Phyllactinia_mali_ex_Crataegus_AB080523, 5 Phyllactinia_mali_ex_Mespilus_AB080556, 6 Phyllactinia_mali_ex_Crataegus_AB080559 ; TREE * PAUP_3 = [&R] (1,((2,3),(4,5,6))); END; BEGIN CODONS; CODONPOSSET * CodonPositions = N: 1-591; CODESET * UNTITLED = Universal: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; END; BEGIN MacClade; Version 4.0 84; LastModified -1213206153; FileSettings editor '0' '0' '1' '1'; Singles 000; Editor 0001100111111110010001001 '1' '24' Geneva '9' '226' '1' all; EditorPosition '42' '6' '691' '945'; TreeWindowPosition '42' '6' '701' '974'; ListWindow Characters closed Geneva '9' '50' '10' '265' '399' 000; ListWindow Taxa closed Geneva '9' '50' '10' '153' '462' 100000; ListWindow Trees closed Geneva '9' '50' '25' '121' '379' ; ListWindow TypeSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow ExSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow TaxSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharPartitions closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharPartNames closed Geneva '9' '50' '10' '276' '490' ; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ; ChartWindowPosition '50' '30' '688' '964'; StateNamesSymbols closed Geneva '9' '10' '50' '30' '148' '220'; WindowOrder Data; OtherSymbols &/ 00 ?-; Correlation '0' '0' '1000' '0' '0' 10011010; Salmo 00000001; EditorFile '2'; ExportHTML _ MOSS '100' 110000; PrettyPrint 10; EditorToolsPosition '575' '46' '115' '165'; TreeToolsPosition '582' '9' '126' '138'; TreeWindowProgram 10; TreeWindow 0000; Continuous '0' '3' 1; Calculations 0000001; SummaryMode '0' '0' 0; Charts Geneva '9' (normal) 0010; NexusOptions '0' '0' '100' 101011000; TipLabel '1'; TreeFont Geneva '9' (normal); TreeShape 1.0 1.0 0100; TraceLabels 0101; ChartColors '0' '0' '65535' '9' '0' 1; ChartBiggestSpot 1; ChartPercent 10; ChartBarWidth '10' 1; ChartVerticalAxis 10101; ChartMinMax '0'; TraceAllChangesDisplay '1' 1; BarsOnBranchesDisplay '0' '0' '60000' '10000' '10000' '10000' '10000' '60000' '65000' '65000' '65000' '6' '1' 0000101; ContinuousBranchLabels 0; AllStatesBranchLabels 1; IndexNotation '2' 1; PrintTree 10.00 '2' '2' '2' '2' '2' '2' '2' '2' '2' '2' '2' Geneva '9' (normal) Geneva '10' (normal) Geneva '9' (normal) Geneva '9' (normal) Geneva '9' (bold ) Geneva '9' (normal) Geneva '9' (normal) '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '1' '1' '1' '1' '30' '243' '-39' '4' '-40' '0' '1' '2' '1' '8' '0' '0' '0' '2' 1000111000000000000100000111000; MatchChar 00 .; EntryInterpretation 01; ColorOptions 00; TreeTools '0' '5' '4' '0' '10' '4' '0' 00100111111101110; EditorTools '0' '0' '0' '1000' '0' '0' '6' '3' '0' 100000101110001; PairAlign '2' '2' '3' '2' '1' '1' '2' '1' '3' 1010; BothTools '1'; END;