#NEXUS
[written Mon Sep 01 18:37:16 KST 2014 by Mesquite  version 3.0 (build 644) at Jonathan-Fongs-MacBook-2.local/147.47.212.188]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=18;
	TAXLABELS
		'Penicillium jejuense SFC20140101-M820' 'Penicillium jejuense SFC20140101-M847' 'Penicillium jejuense SFC20140101-M756T' Penicillium_spinulosum_CBS_289.36 Penicillium_subericola_CBS_125096T Penicillium_palmense_CBS_336.79T Penicillium_aurantioviolaceum_CBS_347.59 'Penicillium aurantioviolaceum DTO 225-E4' Penicillium_valentinum_CBS_172.81T Penicillium_valentinum_CBS_381.48 Penicillium_yezoense_CBS_140.72 Penicillium_yezoense_CBS_350.59T Penicillium_thomii_CBS_225.81T Penicillium_patens_CBS_260.87T Penicillium_crocicola_CBS_745.70T Penicillium_purpurascens_CBS_366.48T Penicillium_glabrum_CBS_125543T Penicillium_hirayamae_NRRL_143T 
	;

END;


BEGIN CHARACTERS;
	TITLE  Penicillium_benA_sequences;
	DIMENSIONS  NCHAR=431;
	FORMAT DATATYPE = DNA GAP = - MISSING = ?;
	MATRIX
	'Penicillium jejuense SFC20140101-M820'   TGGTACGTGTTGCAACCACGGTCATCAATTGATCATCAGTTTGACCGACGTACTGACTGAATTCTAGGCAAACCATTGCTGGTGAGCACGGACTTGATGGTGATGGACAGTGAGTTTCAACATCGATGAGATT--GCGAGGTGGAAATGGCGGTCTGACAA-TTTT-TAGCGTCAACGAGGCCTCTGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTCTGG-AAAT-GAAGAAGTATGCATGGTGGCTTCTCTAAT---GGAGATCTGGACAGGCCAGCAGCAACCGTTACGTTCCCCGTGCCGTCCTCGTCGACTTGGAGCCCGGTACCATGGACGCTGTCCGTGCCAGTCCCTTCGGTGGTCTCTTCCGCCCCGACAACTTCGTTTTCGGTCAGTCCGGTGCTGGTAACAACTGG
	'Penicillium jejuense SFC20140101-M847'   TGGTACGTGTTGCAACCACGGTCATCAATTGATCATCAGTTTGACCGACGTACTGACTGAATTCTAGGCAAACCATTGCTGGTGAGCACGGACTTGATGGTGATGGACAGTGAGTTTCAACATCGATGAGATT--GCGAGGTGGAAATGGCGGTCTGACAA-TTTT-TAGCGTCAACGAGGCCTCTGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTCTGG-AAAT-GAAGAAGTATGCATGGTGGCTTCTCTAAT---GGAGATCTGGACAGGCCAGCAGCAACCGTTACGTTCCCCGTGCCGTCCTCGTCGACTTGGAGCCCGGTACCATGGACGCTGTCCGTGCCAGTCCCTTCGGTGGTCTCTTCCGCCCCGACAACTTCGTTTTCGGTCAGTCCGGTGCTGGTAACAACTGG
	'Penicillium jejuense SFC20140101-M756T'  TGGTACGTGTTGCAACCACGGTCATCAATTGATCATCAGTTTGACCGACGTACTGACTGAATTCTAGGCAAACCATTGCTGGTGAGCACGGACTTGATGGTGATGGACAGTGAGTTTCAACATCGATGAGATT--GCGAGGTGGAAATGGCGGTCTGACAA-TTTT-TAGCGTCAACGAGGCCTCTGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTCTGG-AAAT-GAAGAAGTATGCATGGTGGCTTCTCTAAT---GGAGATCTGGACAGGCCAGCAGCAACCGTTACGTTCCCCGTGCCGTCCTCGTCGACTTGGAGCCCGGTACCATGGACGCTGTCCGTGCCAGTCCCTTCGGTGGTCTCTTCCGCCCCGACAACTTCGTTTTCGGTCAGTCCGGTGCTGGTAACAACTGG
	Penicillium_spinulosum_CBS_289.36         TGGTACGTGTTGCAACCACGGTCATCAATTGGTGGTCCGTTGAACCGATTTACTGACTGAATTCTAGGCAAACCATTGCTGGTGAGCACGGACTTGATGGCGATGGACAGTGAGTTTCAACATCGATGAGATT--GCGAGGTGGAAATGGCGGTCTGATAA-TTTT-TAGCGTCAACGAGGCCTCTGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTACGTGTAG-AATT-GAAAAAGTATATATGGAGTCTTCTCTAAT---GTTGATCTTGATAGGCCAGCAGCAACCGTTACGTCCCCCGTGCCGTCCTTGTCGACTTGGAGCCCGGTACCATGGACGCTGTCCGTGCTGGTCCCTTCGGCGGTCTCTTCCGCCCCGACAACTTCGTTTTCGGTCAGTCCGGAGCCGGTAACAACTGG
	Penicillium_subericola_CBS_125096T        TGGTACGTGTTGCAACTACGGTCATCAATTGGTAGTCCGTT-GACCGATTTACTGACTGAATTCTAGGCAAACCATTGCTGGTGAGCACGGACTTGATGGCGATGGACAGTGAGTTTCAACATCGATGAGATT--GCAAGGTGGAAATGGCGGTCTGATAA-TTTT-TAGCGTCAACGAGGCCTCTGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTACGTGTAG-AATT-GAAAAATTATATATGGAGTCTTCTCTAAT---ATTGATCTTAATAGGCCAGCAGCAACCGTTACGTCCCCCGTGCCGTCCTAGTCGACTTGGAGCCCGGTACCATGGACGCTGTCCGTGCTGGTCCCTTCGGCGGTCTCTTCCGCCCCGACAACTTCGTTTTCGGTCAGTCCGGAGCTGGTAACAACTGG
	Penicillium_palmense_CBS_336.79T          TGGTACGTGTTTCAACCACGGTCATCAATTGGTAGTCCGTTAAACAGTTTTACTGACTGAATTCTAGGCAAACCATTGCTGGTGAGCACGGACTTGATGGCGATGGACAGTGAGTTTCAACATCGATGAGATT--GCTAGGTGGAAATAGCGGTCTGATAA-TTTT-TAGCGTCAACGAGGCTTCTGACCTCCAATTGGAGCGCATGAACGTCTACTTCAACGAGGTGAGTGTAG-AATT-GAAAGAGTATCTATGGAGTCTTCTCTAAC---TTTAATCTTGATAGGCCAGCAGCAACCGTTACGTTCCCCGTGCCGTCCTTGTCGACTTGGAGCCCGGTACCATGGACGCTGTCCGTGCTGGTCCCTTCGGCGGTCTCTTCCGCCCCGACAACTTCGTTTTCGGTCAGTCCGGAGCTGGTAACAACTGG
	Penicillium_aurantioviolaceum_CBS_347.59  TGGTACGTGTTGCAACCCCAATCATCAATTGGGGATCTGTCTGACCAATATACTGACCGAATTCTAGGCAAACCATTGCTGGTGAGCACGGACTTGATGGCGATGGACAGTGAGTTTCAATATTGATGAGATT--GCGAGGTGGAAATGGCGGTCTGATGA-TTTT-TAGCGTCACCGAGGCTTCTGACCTCCAGCTGGAGCGCATGAACGTCTACTTCAACGAGGTATGCGTGG-AATTGGAACAAGTATGCATGGTGGCTTCTCTAAC---ATTGATCTTGATAGGCCAGCAGCAACCGTTACGTTCCCCGTGCCGTCCTTGTCGACTTGGAGCCCGGTACCATGGACGCTGTCCGTGCCGGTCCCTTCGGTGGTCTCTTCCGCCCCGACAACTTCGTTTTCGGCCAGTCTGGTGCTGGTAACAACTGG
	'Penicillium aurantioviolaceum DTO 225-E4' TGGTACGTGTTGCAACCCCAATCATCAATTGGGGATCTGTCTGACCAATATACTGACCGAATTCTAGGCAAACCATTGCTGGTGAGCACGGACTTGATGGCGATGGACAGTGAGTTTCAATATTGATGAGATT--GCGAGGTGGAAATGGCGGTCTGATGA-TTTT-TAGCGTCACCGAGGCTTCTGACCTCCAGCTGGAGCGCATGAACGTCTACTTCAACGAGGTATGCGTGG-AATTGGAACAAGTATGCATGGTGGCTTCTCTAAC---ATTGATCTTGATAGGCCAGCAGCAACCGTTACGTTCCCCGTGCCGTCCTTGTCGACTTGGAGCCCGGTACCATGGACGCTGTCCGTGCCGGTCCCTTCGGTGGTCTCTTCCGCCCCGACAACTTCGTTTTCGGCCAGTCTGGTGCTGGTAACAACTGG
	Penicillium_valentinum_CBS_172.81T        TGGTACGTGTTGCAAGGACGATCATCAATTGGGGATCTGTTTGACCAATATACTGACTGAATTCTAGGCAAACCATTGCTGGTGAGCACGGACTTGATGGCGATGGACAGTGAGTTTCAACATTGATGAGATT--GCGAGGTGGAAATGGCGGTCTGATAA-ATTT-TAGCGTCAACGAGGCTTCCGACCTCCAGTTGGAGCGTATGAACGTCTACTTCAACGAGGTATGTGTGGACATT-GAACAAGTATGCATGGTGGCTTCTCTAAC---ATTGATCTTGATAGGCCAGCAGCAACCGTTACGTTCCCCGTGCCGTCCTTGTCGACTTGGAGCCCGGTACCATGGACGCTGTCCGTGCCGGTCCCTTCGGTGGTCTCTTCCGCCCCGACAACTTCGTTTTCGGCCAGTCTGGTGCTGGTAACAACTGG
	Penicillium_valentinum_CBS_381.48         TGGTACGTGTTGCAAGGACGATCATCAATTGGGGATCTGTTTGACCAATATACTGACTGAATTCTAGGCAAACCATTGCTGGTGAGCACGGACTTGATGGCGATGGACAGTGAGTTTCAACATTGATGAGATT--GCGAGGTGGAAATGGCGGTCTGATAA-ATTT-TAGCGTCAACGAGGCTTCCGACCTCCAGTTGGAGCGTATGAACGTCTACTTCAACGAGGTATGTGTGGACATT-GAACAAGTATGCATGGTGGCTTCTCTAAC---ATTGATCTTGATAGGCCAGCAGCAACCGTTACGTTCCCCGTGCCGTCCTTGTCGACTTGGAGCCCGGTACCATGGACGCTGTCCGTGCCGGTCCCTTCGGTGGTCTCTTCCGCCCCGACAACTTCGTTTTCGGCCAGTCTGGTGCTGGTAACAACTGG
	Penicillium_yezoense_CBS_140.72           TGGTACGTGTTGCAACCACGATCATCAATTGTGAATCTGTTTGACCGATTTACTGACTGAATTCTAGGCAAACCATTGCTGGTGAGCACGGACTTGATGGTGATGGACAGTGAGTTTCAAAATTGATGAGATT--GCGAGGTGGAAATGGCGGTCTGATAA-TTTT-TAGCGTCAACGAGGCTTCTGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGTGG-AATT-GAACAAGTATACATGGTGGCTTCTCTAAT---GTTGATCTTGATAGGCCAGCAGCAACCGTTACGTTCCCCGTGCCGTCCTTGTCGACTTGGAGCCCGGTACCATGGACGCTGTCCGTGCCGGTCCCTTCGGTGGTCTTTTCCGCCCCGACAACTTCGTTTTCGGCCAGTCTGGTGCTGGTAACAACTGG
	Penicillium_yezoense_CBS_350.59T          TGGTACGTGTTGCAACCACGATCATCAATTGTGAATCTGTTTGACCGATTTACTGACTGAATTCTAGGCAAACCATTGCTGGTGAGCACGGACTTGATGGTGATGGACAGTGAGTTTCAAAATTGATGAGATT--GCGAGGTGGAAATGGCGGTCTGATAA-TTTT-TAGCGTCAACGAGGCTTCTGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGTGG-AATT-GAACAAGTATACATGGTGGCTTCTCTAAT---GTTGATCTTGATAGGCCAGCAGCAACCGTTACGTTCCCCGTGCCGTCCTTGTCGACTTGGAGCCCGGTACCATGGACGCTGTCCGTGCCGGTCCCTTCGGTGGTCTTTTCCGCCCCGACAACTTCGTTTTCGGCCAGTCTGGTGCTGGTAACAACTGG
	Penicillium_thomii_CBS_225.81T            TGGTACGTGTTGCAACCATGACCGTCAATTGGAAATCTGTTTGACCGATTTACTGACTGAATTCTAGGCAAACCATTGCTGGCGAGCACGGACTTGATGGCGATGGACAGTGAGTTTCAACATTGATGAGATT--GCGAGGTGGAAATGGCGGTCTGATAA-TTTT-TAGCGTCAACGAGGCTTCTGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGTGG-AATT-GAACAATTGTACATGGTGGCTTGCCTAAT---TTTTATCTTAATAGGCCAGCAGCAACCGTTACGTTCCCCGTGCCGTCCTTGTCGACTTGGAGCCCGGTACCATGGACGCTGTCCGTGCCGGTCCCTTCGGCGGTCTCTTCCGCCCCGACAACTTCGTTTTCGGCCAGTCTGGTGCTGGTAACAACTGG
	Penicillium_patens_CBS_260.87T            TGGTACGTGTTGCAACCATGACCGTCAATTGGAAATCTGTTTGACCGATTTACTGACTGAATTCTAGGCAAACCATTGCTGGCGAGCACGGACTTGATGGCGATGGACAGTGAGTTTCAACATTGATGAGATT--GCGAGGTGGAAATGGCGGTCTGATAA-TTTT-TAGCGTCAACGAGGCTTCTGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGTGG-AATT-GAACAACTGTACATGGTGGCTTGCCTAAT---TTTTATCTTAATAGGCCAGCAGCAACCGTTACGTTCCCCGTGCCGTCCTTGTCGACTTGGAGCCCGGTACCATGGACGCTGTCCGTGCCGGTCCCTTCGGCGGTCTCTTCCGCCCCGACAACTTCGTTTTCGGCCAGTCTGGTGCTGGTAACAACTGG
	Penicillium_crocicola_CBS_745.70T         TGGTACGTGTTGCAATCACGATCATCAATTGATCCTCTGTTTGACCGGTTTACTGACTGAATTCTAGGCAAACCATTGCTGGTGAGCACGGACTTGATGGCGATGGACAGTGAGTTTCAGCATTGATGAGATT--GCGAGGTGGAAATGGCGGTCTGATAAGTTTT-TAGCGTCAACGAGGCTTCTGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGTGG-ACGT-GACACATTATAAATGGTGGCTTCTCTAAT---TTTGATCTTGATAGGCCAGCAGCAACCGTTACGTTCCCCGTGCCGTCCTTGTCGACTTGGAGCCCGGTACCATGGACGCTGTCCGTGCCGGTCCCTTCGGCGGTCTCTTCCGCCCCGACAACTTCGTTTTCGGTCAGTCCGGTGCTGGTAACAACTGG
	Penicillium_purpurascens_CBS_366.48T      TGGTACGTGTTGCGACCACGATCACCAATTGGTAGCCTGTTGGACCAAATCACTGACTGATTTCTAGGCAAACAATTGCTGGCGAGCACGGACTTGATGGTGATGGACAGTGAGTTTCGACATGGATGAGATT--GCGAGGTGGAAATGGCGGTCTGATAA-TTTT-TAGCGTCAACGAGGCTTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTATGG-AATT-GAGACCCTACATTAGGGGGCTTCTCTAAT---TTTGATCTCGATAGGCCAGCAGCAACCGTTACGTTCCCCGTGCCGTCCTTGTCGACTTGGAGCCCGGTACCATGGACGCTGTCCGTGCCGGTCCCTTCGGTGGTCTCTTCCGCCCCGACAACTTCGTTTTCGGTCAGTCCGGTGCTGGTAACAACTGG
	Penicillium_glabrum_CBS_125543T           TGGTACGTGTTGCATCCACGATAACCAATTGATAGCCTGTTGGACCGAATCACTAACTGATTTCTAGGCAAACCATTGCTGGCGAGCACGGACTTGATGGTGATGGACAGTGAGTTTCAACATCGATGAGATT--GCGAGGTGGAAATGGCGGTCTGATAA-TTTT-TAGCGTCAACGAGGCTTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGTGG-AATT-GAAGCTAGAAGTATAAAGGCTTCTCTAAT---GTTGATCTTGATAGGCCAGCAGCAACCGTTACGTTCCCCGTGCCGTCCTTGTCGACTTGGAGCCCGGTACCATGGACGCTGTCCGTGCCGGTCCCTTCGGTGGTCTCTTCCGCCCCGACAACTTCGTTTTCGGCCAGTCCGGTGCTGGTAACAACTGG
	Penicillium_hirayamae_NRRL_143T           --GACTTTACCTTGCCTCAGGTAGTCAATTGTTGAACC-CAGGAGCCTTATGCTAACCTACTTCCAGGCAGAACATTGCTAGTGAGCATGGCCTTGATGGCGAGGGCCAGTAAGTATCAATACGAGTGGGATTGGGTGATGTGAGAACGGCGGTCTGATAT-TTTTCTAGCTTTACTGGCCAGTCTGACCTCCAGCTCGAGCGCATGAACGTCTACTTCAACCACGTAAGTGTGG-AATCGATACCCGTAACGTTTAAACCTCGTCTAATACAATTGATTTTCATAGGCCAGCGGTGACCGTTACGTTCCCCGTGCCGTCCTGGTCGACTTGGAGCCTGGTACCATGGACGCTGTCCGTGCCGGTCCCTTTGGAAAGCTTTTCCGTCCCGACAACTTTGTTTTCGGTCAGTCCGGTGCCGGTAACAACTGG

;



END;

BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1 -  431;

END;

BEGIN CODONS;
	CODESET * UNTITLED   =  universal:  1 -  431;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Jukes-Cantor':  1 -  431;
END;

BEGIN TREES;
	Title benA_ML_analysis;
	LINK Taxa = Taxa;
	TRANSLATE
[0] 		1 'Penicillium jejuense SFC20140101-M820',
[1] 		2 'Penicillium jejuense SFC20140101-M847',
[2] 		3 'Penicillium jejuense SFC20140101-M756T',
[3] 		4 Penicillium_spinulosum_CBS_289.36,
[4] 		5 Penicillium_subericola_CBS_125096T,
[5] 		6 Penicillium_palmense_CBS_336.79T,
[6] 		7 Penicillium_aurantioviolaceum_CBS_347.59,
[7] 		8 'Penicillium aurantioviolaceum DTO 225-E4',
[8] 		9 Penicillium_valentinum_CBS_172.81T,
[9] 		10 Penicillium_valentinum_CBS_381.48,
[10] 		11 Penicillium_yezoense_CBS_140.72,
[11] 		12 Penicillium_yezoense_CBS_350.59T,
[12] 		13 Penicillium_thomii_CBS_225.81T,
[13] 		14 Penicillium_patens_CBS_260.87T,
[14] 		15 Penicillium_crocicola_CBS_745.70T,
[15] 		16 Penicillium_purpurascens_CBS_366.48T,
[16] 		17 Penicillium_glabrum_CBS_125543T,
[17] 		18 Penicillium_hirayamae_NRRL_143T;
	TREE Imported_tree_1 = (18:0.3270458084033193,(17:0.003029621489268835,(16:0.041256213581540274,((6:0.040383228207520286,(4:0.006021297129848889,5:0.017679428005986843)55:0.004173851915181014)93:0.026781679140738875,((15:0.034081147836672945,(2:0.00000131687555889016,(1:0.00000131687555889016,3:0.00000131687555889016):0.00000131687555889016)16:0.051589697269996564)100:0.004915803056645594,((13:0.00000131687555889016,14:0.00251494180001795)100:0.03539114479669387,((11:0.00000131687555889016,12:0.00000131687555889016)100:0.01036123442494585,((7:0.00000131687555889016,8:0.00000131687555889016)100:0.024218927033104028,(9:0.00000131687555889016,10:0.00000131687555889016)100:0.01707120371119381)52:0.015753525616479497)34:0.00000131687555889016)43:0.01195258063697989)55:0.011291854914702863)37:0.03358716542544869)37:0.029977996315864213)33:0.3270458084033193);

END;


Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		timeSaved 1409564236228;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			setID 0 705352543326168382;
		endTell;
		getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
		tell It;
			setID 0 3226448053050073815;
			mqVersion 300;
			checksumv 0 3 1797500598 null  getNumChars 431 numChars 431 getNumTaxa 18 numTaxa 18   short true   bits 15   states 15   sumSquaresStatesOnly 174203.0 sumSquares 174203.0 longCompressibleToShort false usingShortMatrix true   NumFiles 1 NumMatrices 1;
			mqVersion;
		endTell;
		getWindow;
		tell It;
			suppress;
			setResourcesState true false 100;
			setPopoutState 400;
			setExplanationSize 0;
			setAnnotationSize 0;
			setFontIncAnnot 0;
			setFontIncExp 0;
			setSize 700 464;
			setLocation 39 141;
			setFont SanSerif;
			setFontSize 10;
			getToolPalette;
			tell It;
			endTell;
			setActive;
			desuppress;
		endTell;
		endTell;
end;