#NEXUS [written Thu Sep 21 16:33:36 SGT 2017 by Mesquite version 3.3 (build 854) at 176-46.priv23.nus.edu.sg/172.23.176.46] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=44; TAXLABELS Cadophora_finlandica Cadophora_orientamericana_CTC1 Cadophora_orientamericana_CTC2 Cadophora_orientamericana_CTC4 Cadophora_orientamericana_CTC5 Cadophora_orientamericana_MAC2 Cadophora_orientamericana_MDC1 Cadophora_orientamericana_NHC1 Cadophora_orientamericana_NHC2 Cadophora_orientamericana_NHC3 Cadophora_orientamericana_NYC3 Cadophora_orientamericana_NYC6 Cadophora_orientamericana_NYC9 Cadophora_orientamericana_NYC11 Cadophora_orientamericana_NYC12 Cadophora_orientamericana_VAC1 Cadophora_orientamericana_VTC1 Cadophora_orientamericana_OHC1 Cadophora_spadicis_RIC1 Cadophora_spadicis_111743 Cadophora_spadicis_RIC3 Cadophora_spadicis_QCC1 Cadophora_fastigiata_A168 Cadophora_melinii_A164 Cadophora_melinii_U11 Cadophora_melinii_ONC1 'Cadophora novi-eboraci 101359' 'Cadophora novi-eboraci NYC2' 'Cadophora novi-eboraci NYC1' 'Cadophora novi-eboraci NYC13' 'Cadophora novi-eboraci NYC14' Cadophora_malorum_A167 'Cadophora luteo-olivacea A175' 'Cadophora luteo-olivacea A19' 'Cadophora luteo-olivacea A41' 'Cadophora luteo-olivacea A42' 'Cadophora luteo-olivacea U5' 'Cadophora luteo-olivacea U8' 'Cadophora luteo-olivacea U17' 'Cadophora luteo-olivacea U7' 'Cadophora luteo-olivacea U21' 'Cadophora luteo-olivacea U22' 'Cadophora luteo-olivacea U53' 'Cadophora luteo-olivacea U56' ; END; BEGIN CHARACTERS; TITLE TEF; DIMENSIONS NCHAR=460; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Cadophora_finlandica TCGAGAAGTTCGAGAAGGTAAGAATTCCACCTCGCCGTCGCCT----------------------TTGCACACATTTCCTGCCTTATCGCGATTTGTGCCCCTCGGTGGGGCA-AGGTCGCTTCCCGCAATCAACAAA---TTTTTGCGCCCGGACATTTTTGGCGCGACAACCAGCGTTGTTTGCTGCACAAA----------------AACCA-ACTAATTT------------CT------AC-----------------ACGGCAT--CAATT-TCTCTTGTGCAGCTGCTGACTCGCTCTAAAGGAAGCCGCCGAGTTGGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTAAAGGCTGAGCGTGAGCGTGGTATCACCATCGATATCGCTCTCTGGAAGTTCGAGACCCCCAAGTACTATGTCACCGTCATTGGTAAGTCGCACC Cadophora_orientamericana_CTC1 TCGAGAAGTTCGAGAAGGTAAGAA-ACCATTTTGCTGTT--------------------------TTCTTGTT----CTCGCCTTATCGCAGGTTTTGCCCCTCGGTGGGGCAGATTTCGTTGCCCATAGTCAACA-TTTTTTTCTGCGCCCGTGCATCTTCACCGCAACGCTTCGCATCCGTTGCTGCCCAACC---------------CCTCA-CCTTCCTT------------CTTTCACAACA----ATAACACA----ACAGCACCACAATG-TCT---AGGCAATCACTGACTCCCATAATAGGAAGCCGCCGAGTTGGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGATAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACTATCGATATCGCTCTCTGGAAGTTCGAGACCCCCAAGTACTACGTCACCGTCATTGGTATGTTGCTTC Cadophora_orientamericana_CTC2 TCGAGAAGTTCGAGAAGGTAAGAA-GCCATTTTGCTGTT--------------------------TTCTTGTT----CTCGCCTTATCGCAGGTTTTGCCCCTCGGTGGGGCAGATTTCGTTGCCCATAGTCAACA-TTTTTTTCTGCGCCCGTGCATCTTCACCGCAACGCTTCGCATCCGTTGCTGCCCAACC---------------CCTCA-CCTTCCTT------------CTTTCACAACA----ATAACACA----ACAGCACCACAATG-TCT---AGGCAATCACTGACTCCCATAATAGGAAGCCGCCGAGTTGGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGATAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACTATCGATATCGCTCTCTGGAAGTTCGAGACCCCCAAGTACTACGTCACCGTCATTGGTATGTTGCTTC Cadophora_orientamericana_CTC4 TCGAGAAGTTCGAGAAGGTAAGAA-ACCATTTTGCTGTT--------------------------TTCTTGTT----CTCGCCTTATCGCAGGTTTTGCCCCTCGGTGGGGCAGATTTCGTTGCCCATAGTCAACA-TTTTTTTCTGCGCCCGTGCATCTTCACCGCAACGCTTCGCATCCGTTGCTGCCCAACC---------------CCTCA-CCTTCCTT------------CTTTCACAACA----ATAACACA----ACAGCACCACAATG-TCT---AGGCAATCACTGACTCCCATAATAGGAAGCCGCCGAGTTGGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGATAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACTATCGATATCGCTCTCTGGAAGTTCGAGACCCCCAAGTACTACGTCACCGTCATTGGTATGTTGCTTC Cadophora_orientamericana_CTC5 TCGAGAAGTTCGAGAAGGTAAGAA-GCCATTTTGCTGTT--------------------------TTCTTGTT----CTCGCCTTATCGCAGGTTTTGCCCCTCGGTGGGGCAGATTTCGTTGCCCATAGTCAACA-TTTTTTTCTGCGCCCGTGCATCTTCACCGCAACGCTTCGCATCCGTTGCTGCCCAACC---------------CCTCA-CCTTCCTT------------CTTTCACAACA----ATAACACA----ACAGCACCACAATG-TCT---AGGCAATCACTGACTCCCATAATAGGAAGCCGCCGAGTTGGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGATAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACTATCGATATCGCTCTCTGGAAGTTCGAGACCCCCAAGTACTACGTCACCGTCATTGGTATGTTGCTTC Cadophora_orientamericana_MAC2 TCGAGAAGTTCGAGAAGGTAAGAA-ACCATTTTGCTGTT--------------------------TTCTTGTT----CTCGCCTTATCGCAGGTTTTGCCCCTCGGTGGGGCAGATTTCGTTGCCCATAGTCAACA-TTTTTTTCTGCGCCCGTGCATCTTCACCGCAACGCTTCGCATCCGTTGCTGCCCAACC---------------CCTCA-CCTTCCTT------------CTTTCACAACA----ATAACACA----ACAGCACCACAATG-TCT---AGGCAATCACTGACTCCCATAATAGGAAGCCGCCGAGTTGGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGATAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACTATCGATATCGCTCTCTGGAAGTTCGAGACCCCCAAGTACTACGTCACCGTCATTGGTATGTTGCTTC Cadophora_orientamericana_MDC1 TCGAGAAGTTCGAGAAGGTAAGAA-GCCATTTTGCTGTT--------------------------TTCTTGTT----CTCGCCTTATCGCAGGTTTTGCCCCTCGGTGGGGCAGATTTCGTTGCCCATAGTCAACA-TTTTTTTCTGCGCCCGTGCATCTTCACCGCAACGCTTCGCATCCGTTGCTGCCCAACC---------------CCTCA-CCTTCCTT------------CTTTCACAACA----ATAACACA----ACAGCACCACAATG-TCT---AGGCAATCACTGACTCCCATAATAGGAAGCCGCCGAGTTGGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGATAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACTATCGATATCGCTCTCTGGAAGTTCGAGACCCCCAAGTACTACGTCACCGTCATTGGTATGTTGCTTC Cadophora_orientamericana_NHC1 TCGAGAAGTTCGAGAAGGTAAGAA-GCCATTTTGCTGTT--------------------------TTCTTGTT----CTCGCCTTATCGCAGGTTTTGCCCCTCGGTGGGGCAGATTTCGTTGCCCATAGTCAACA-TTTTTTTCTGCGCCCGTGCATCTTCACCGCAACGCTTCGCATCCGTTGCTGCCCAACC---------------CCTCA-CCTTCCTT------------CTTTCACAACA----ATAACACA----ACAGCACCACAATG-TCT---AGGCAATCACTGACTCCCATAATAGGAAGCCGCCGAGTTGGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGATAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACTATCGATATCGCTCTCTGGAAGTTCGAGACCCCCAAGTACTACGTCACCGTCATTGGTATGTTGCTTC Cadophora_orientamericana_NHC2 TCGAGAAGTTCGAGAAGGTAAGAA-GCCATTTTGCTGTT--------------------------TTCTTGTT----CTCGCCTTATCGCAGGTTTTGCCCCTCGGTGGGGCAGATTTCGTTGCCCATAGTCAACA-TTTTTTTCTGCGCCCGTGCATCTTCACCGCAACGCTTCGCATCCGTTGCTGCCCAACC---------------CCTCA-CCTTCCTT------------CTTTCACAACA----ATAACACA----ACAGCACCACAATG-TCT---AGGCAATCACTGACTCCCATAATAGGAAGCCGCCGAGTTGGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGATAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACTATCGATATCGCTCTCTGGAAGTTCGAGACCCCCAAGTACTACGTCACCGTCATTGGTATGTTGCTTC Cadophora_orientamericana_NHC3 TCGAGAAGTTCGAGAAGGTAAGAA-GCCATTTTGCTGTT--------------------------TTCTTGTT----CTCGCCTTATCGCAGGTTTTGCCCCTCGGTGGGGCAGATTTCGTTGCCCATAGTCAACA-TTTTTTTCTGCGCCCGTGCATCTTCACCGCAACGCTTCGCATCCGTTGCTGCCCAACC---------------CCTCA-CCTTCCTT------------CTTTCACAACA----ATAACACA----ACAGCACCACAATG-TCT---AGGCAATCACTGACTCCCATAATAGGAAGCCGCCGAGTTGGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGATAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACTATCGATATCGCTCTCTGGAAGTTCGAGACCCCCAAGTACTACGTCACCGTCATTGGTATGTTGCTTC Cadophora_orientamericana_NYC3 TCGAGAAGTTCGAGAAGGTAAGAA-ACCATTTTGCTGTT--------------------------TTCTTGTT----CTCGCCTTATCGCAGGTTTTGCCCCTCGGTGGGGCAGATTTCGTTGCCCATAGTCAACA-TTTTTTTCTGCGCCCGTGCATCTTCACCGCAACGCTTCGCATCCGTTGCTGCCCAACC---------------CCTCA-CCTTCCTT------------CTTTCACAACA----ATAACACA----ACAGCACCACAATG-TCT---AGGCAATCACTGACTCCCATAATAGGAAGCCGCCGAGTTGGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGATAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACTATCGATATCGCTCTCTGGAAGTTCGAGACCCCCAAGTACTACGTCACCGTCATTGGTATGTTGCTTC Cadophora_orientamericana_NYC6 TCGAGAAGTTCGAGAAGGTAAGAA-GCCATTTTGCTGTT--------------------------TTTTTGTT----CTCGCCTTATCGCAGGTTTTGCCCCTCGGTGGGGCAGATTTCGTTGCCCATAGTCAACA-TTTTTTTCTGCGCCCGTGCATCTTCACCGCAACGCTTCGCATCCGTTGCTGCCCAACC---------------CCTCA-CCTTCCTT------------CTTTCACAACA----ATAACACA----ACAACACCACAATG-TCT---AGGCAATCACTGACTCCCATAATAGGAAGCCGCCGAGTTGGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGATAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACTATCGATATCGCTCTCTGGAAGTTCGAGACCCCCAAGTACTACGTCACCGTCATTGGTATGTTGCTTC Cadophora_orientamericana_NYC9 TCGAGAAGTTCGAGAAGGTAAGAA-GCCATTTTGCTGTT--------------------------TTTTTGTT----CTCGCCTTATCGCAGGTTTTGCCCCTCGGTGGGGCAGATTTCGTTGCCCATAGTCAACA-TTTTTTTCTGCGCCCGTGCATCTTCACCGCAACGCTTCGCATCCGTTGCTGCCCAACC---------------CCTCA-CCTTCCTT------------CTTTCACAACA----ATAACACA----ACAACACCACAATG-TCT---AGGCAATCACTGACTCCCATAATAGGAAGCCGCCGAGTTGGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGATAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACTATCGATATCGCTCTCTGGAAGTTCGAGACCCCCAAGTACTACGTCACCGTCATTGGTATGTTGCTTC Cadophora_orientamericana_NYC11 TCGAGAAGTTCGAGAAGGTAAGAA-ACCATTTTGCTGTT--------------------------TTCTTGTT----CTCGCCTTATCGCAGGTTTTGCCCCTCGGTGGGGCAGATTTCGTTGCCCATAGTCAACA-TTTTTTTCTGCGCCCGTGCATCTTCACCGCAACGCTTCGCATCCGTTGCTGCCCAACC---------------CCTCA-CCTTCCTT------------CTTTCACAACA----ATAACACA----ACAGCACCACAATG-TCT---AGGCAATCACTGACTCCCATAATAGGAAGCCGCCGAGTTGGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGATAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACTATCGATATCGCTCTCTGGAAGTTCGAGACCCCCAAGTACTACGTCACCGTCATTGGTATGTTGCTTC Cadophora_orientamericana_NYC12 TCGAGAAGTTCGAGAAGGTAAGAA-GCCATTTTGCTGTT--------------------------TTTTTGTT----CTCGCCTTATCGCAGGTTTTGCCCCTCGGTGGGGCAGATTTCGTTGCCCATAGTCAACA-TTTTTTTCTGCGCCCGTGCATCTTCACCGCAACGCTTCGCATCCGTTGCTGCCCAACC---------------CCTCA-CCTTCCTT------------CTTTCACAACA----ATAACACA----ACAACACCACAATG-TCT---AGGCAATCACTGACTCCCATAATAGGAAGCCGCCGAGTTGGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGATAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACTATCGATATCGCTCTCTGGAAGTTCGAGACCCCCAAGTACTACGTCACCGTCATTGGTATGTTGCTTC Cadophora_orientamericana_VAC1 TCGAGAAGTTCGAGAAGGTAAGAA-ACCATTTTGCTGTT--------------------------TTCTTGTT----CTCGCCTTATCGCAGGTTTTGCCCCTCGGTGGGGCAGATTTCGTTGCCCATAGTCAACA-TTTTTTTCTGCGCCCGTGCATCTTCACCGCAACGCTTCGCATCCGTTGCTGCCCAACC---------------CCTCA-CCTTCCTT------------CTTTCACAACA----ATAACACA----ACAGCACCACAATG-TCT---AGGCAATCACTGACTCCCATAATAGGAAGCCGCCGAGTTGGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGATAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACTATCGATATCGCTCTCTGGAAGTTCGAGACCCCCAAGTACTACGTCACCGTCATTGGTATGTTGCTTC Cadophora_orientamericana_VTC1 TCGAGAAGTTCGAGAAGGTAAGAA-ACCATTTTGCTGTT--------------------------TTCTTGTT----CTCGCCTTATCGCAGGTTTTGCCCCTCGGTGGGGCAGATTTCGTTGCCCATAGTCAACA-TTTTTTTCTGCGCCCGTGCATCTTCACCGCAACGCTTCGCATCCGTTGCTGCCCAACC---------------CCTCA-CCTTCCTT------------CTTTCACAACA----ATAACACA----ACAGCACCACAATG-TCT---AGGCAATCACTGACTCCCATAATAGGAAGCCGCCGAGTTGGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGATAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACTATCGATATCGCTCTCTGGAAGTTCGAGACCCCCAAGTACTACGTCACCGTCATTGGTATGTTGCTTC Cadophora_orientamericana_OHC1 TCGAGAAGTTCGAGAAGGTAAGAA-GCCATTTTGCTGTT--------------------------TTTTTGTT----CTCGCCTTATCGCAGGTTTTGCCCCTCGGTGGGGCAGATTTCGTTGCCCATAGTCAACA-TTTTTTTCTGCGCCCGTGCATCTTCACCGCAACGCTTCGCATCCGTTGCTGCCCAACC---------------CCTCA-CCTTCCTT------------CTTTCACAACA----ATAACACA----ACAACACCACAATG-TCT---AGGCAATCACTGACTCCCATAATAGGAAGCCGCCGAGTTGGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGATAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACTATCGATATCGCTCTCTGGAAGTTCGAGACCCCCAAGTACTACGTCACCGTCATTGGTATGTTGCTTC Cadophora_spadicis_RIC1 TCGAGAAGTTCGAGAAGGTAAGAA-GCCATTTCGCTGTCCCCT----------------------CTCTTCATC---CTCGCCTTATCGCAGATTTTGCCCCTCGGTGGGGCAGATTTCGCTACCCACAATCAACA--TTTTTTTTGCGCCCGTGCATCTTCACCGCAACGCCT-------GATGCTGCCCAACC---------------CCTCA-CCTTCCT-------------CTTTCACAACA---CAAAACACA-------ACACTACGATG-TCTCC--GATAATCACTAACTCCCATAACAGGAAGCCGCCGAGTTGGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACCCCCAAGTACTACGTCACCGTCATTGGTATGTCGCTTC Cadophora_spadicis_111743 TCGAGAAGTTCGAGAAGGTAAGAA-GCCATTTCGCTGTCCCCT----------------------CTCTTCATC---CTCGCCTTATCGCAGATTTTGCCCCTCGGTGGGGCAGATTTCGCTACCCACAATCAACA--TTTTTTTTGCGCCCGTGCATCTTCACCGCAACGCCT-------GATGCTGCCCAACC---------------CCTCA-CCTTCCT-------------CTTTCACAACA---CAAAACACA-------ACACTACGATG-TCTCC--GATAATCACTAACTCCCATAACAGGAAGCCGCCGAGTTGGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACCCCCAAGTACTACGTCACCGTCATTGGTATGTCGCTTC Cadophora_spadicis_RIC3 TCGAGAAGTTCGAGAAGGTAAGAA-GCCATTTCGCTGTCCCCT----------------------CTCTTCATC---CTCGCCTTATCGCAGATTTTGCCCCTCGGTGGGGCAGATTTCGCTACCCACAATCAACA--TTTTTTTTGCGCCCGTGCATCTTCACCGCAACGCCT-------GATGCTGCCCAACC---------------CCTCA-CCTTCCT-------------CTTTCACAACA---CAAAACACA-------ACACTACGATG-TCTCC--GATAATCACTAACTCCCATAACAGGAAGCCGCCGAGTTGGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACCCCCAAGTACTACGTCACCGTCATTGGTATGTCGCTTC Cadophora_spadicis_QCC1 TCGAGAAGTTCGAGAAGGTAAGAA-GCCATTTCGCTGTCCCCT----------------------CTCTTCATC---CTCGCCTTATCGCAGATTTTGCCCCTCGGTGGGGCAGATTTCGCTACCCACAATCAACA--TTTTTTTTGCGCCCGTGCATCTTCACCGCAACGCCT-------GATGCTGCCCAACC---------------CCTCA-CCTTCCT-------------CTTTCACAACA---CAAAACACA-------ACACTACGATG-TCTCC--GATAATCACTGACTCCCATAACAGGAAGCCGCCGAGTTGGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACCCCCAAGTACTACGTCACCGTCATTGGTATGTCTCTTC Cadophora_fastigiata_A168 TCGAGAAGTTCGAGAAGGTAAGAA-GACATTTCGTTGTTCCCT----------------------CTCTTCGTC-TCCTCGCCTTATCGCAGATTTTGCCCCTCGGTGGGGCAAATTTCGGTACCCACAATCAACA---TTTTTTTGCGCCCGCGCATCTTCACCGCAACGGCTCGCCTCCGTTGCGGCCCAACC---------------CCTCA-CCTTCCT-------------CTTTCACATCACAACAAAACACAACAGACAGTACTATAATG-TCT----GACAATTACTGACTCCCATAACAGGAAGCCGCCGAGTTGGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCTCTCTGGAAGTTCGAGACCCCCAAGTACTACGTCACCGTCATTGGTATGTTGCTTC Cadophora_melinii_A164 TCGAGAAGTTCGAGAAGGTAAGAA-GACATTTCGTTGTTCCCT----------------------CTCTTCGTC-TCCTCGCCTTATCGCAGATTTTGCCCCTCGGTGGGGCAAATTTCGGTACCCACAATCAACA---TTTTTTTGCGCCCGCGCATCTTCACCGCAACGGCTCGCCTCCGTTGCGGCCCAACC---------------CCTCA-CCTTCCT-------------CTTTCACATCACAACAAAACACAACAGACAGTACTATAATG-TCT----GACAATTACTGACTCCCATAACAGGAAGCCGCCGAGTTGGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCTCTCTGGAAGTTCGAGACCCCCAAGTACTACGTCACCGTCATTGGTATGTTGCTTC Cadophora_melinii_U11 TCGAGAAGTTCGAGAAGGTAAGAA-GACATTTCGTTGTTCCCT----------------------CTCTTCGTC-TCCTCGCCTTATCGCAGATTTTGCCCCTCGGTGGGGCAAATTTCGGTACCCACAATCAACA---TTTTTTTGCGCCCGCGCATCTTCACCGCAACGGCTCGCCTCCGTTGCGGCCCAACC---------------CCTCA-CCTTCCT-------------CTTTCACATCACAACAAAACACAACAGACAGTACTATAATG-TCT----GACAATTACTGACTCCCATAACAGGAAGCCGCCGAGTTGGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCTCTCTGGAAGTTCGAGACCCCCAAGTACTACGTCACCGTCATTGGTATGTTGCTTC Cadophora_melinii_ONC1 TCGAGAAGTTCGAGAAGGTAAGAA-GACATTTCGTTGTTCCCT----------------------CTCTTCGTC-TCCTCGCCTTATCGCAGATTTTGCCCCTCGGTGGGGCAAATTTCGGTACCCACAATCAACA---TTTTTTTGCGCCCGCGCATCTTCACCGCAACGGCTCGCCTCCGTTGCGGCCCAACC---------------CCTCA-CCTTCCT-------------CTTTCACATCACAACAAAACACAACAGACAGTACTATAATG-TCT----GACAATTACTGACTCCCATAACAGGAAGCCGCCGAGTTGGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCTCTCTGGAAGTTCGAGACCCCCAAGTACTACGTCACCGTCATTGGTATGTTGCTTC 'Cadophora novi-eboraci 101359' TCGAGAAGTTCGAGAAGGTAAGAA-GCCATTTTGCTGTCCCCT----------------------CTCTTCATCGTCTTCGCCTTATCGCAGATTTTGCCCCTCGGTGGGGCAGATTTCGGTACCCGCAATCAACA-TTTTTTTTTGCGCCCGTGCATCTTCACCGCAACGCCTCGCATCTGTTGCTGCCCAACCACC------------------TCCTTCAT------------CTTTCTCAACACCAG----------ACACAACATCACAATG-CTTCTT-GACCATTACTGACTCTCATAACAGGAAGCCGCCGAGTTGGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAACTAAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCTCTCTGGAAGTTCGAGACCCCTAAGTACTACGTTACCGTCATTGGTATGTTGCTTC 'Cadophora novi-eboraci NYC2' TCGAGAAGTTCGAGAAGGTAAGAA-GCCATTT-GCTGTCCCCT----------------------CTCTTCATCCTCTTCGCCTTATCGCAGATTTTGCCCCTCGGTGGGGCAGATTTCGGTACCCGCAATCAACAATTTTTTTTTGCGCCCGTGCATCTTCACCGCAACGCCTCGCATCTGTTGCTGCCCAACC---------------------CCCTCCGT------------CTTTCACAACACC------------ACACAACATCGCAATG-CTTTTT-GACCATTACTGACTCCCATAACAGGAAGCCGCCGAGTTGGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAACTAAAGGCCGAGCGTGAGCGTGGTATCACCATTGATATCGCTCTCTGGAAGTTCGAGACCCCCAAGTACTACGTCACCGTCATTGGTATGTTGCTTC 'Cadophora novi-eboraci NYC1' TCGAGAAGTTCGAGAAGGTAAGAA-GCCATTT-GCTGTCCCCT----------------------CTCTTCATCCTCTTCGCCTTATCGCAGATTTTGCCCCTCGGTGGGGCAGATTTCGGTACCCGCAATCAACAATTTTTTTTTGCGCCCGTGCATCTTCACCGCAACGCCTCGCATCTGTTGCTGCCCAACC---------------------CCCTCCGT------------CTTTCACAACACC------------ACACAACATCGCAATG-CTTTTT-GACCATTACTGACTCCCATAACAGGAAGCCGCCGAGTTGGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAACTAAAGGCCGAGCGTGAGCGTGGTATCACCATTGATATCGCTCTCTGGAAGTTCGAGACCCCCAAGTACTACGTCACCGTCATTGGTATGTTGCTTC 'Cadophora novi-eboraci NYC13' TCGAGAAGTTCGAGAAGGTAAGAA-GCCATTT-GCTGTCCCCT----------------------CTCTTCATCCTCTTCGCCTTATCGCAGATTTTGCCCCTCGGTGGGGCAGATTTCGGTACCCGCAATCAACAATTTTTTTTTGCGCCCGTGCATCTTCACCGCAACGCCTCGCATCTGTTGCTGCCCAACC---------------------CCCTCCGT------------CTTTCACAACACC------------ACACAACATCGCAATG-CTTTTT-GACCATTACTGACTCCCATAACAGGAAGCCGCCGAGTTGGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAACTAAAGGCCGAGCGTGAGCGTGGTATCACCATTGATATCGCTCTCTGGAAGTTCGAGACCCCCAAGTACTACGTCACCGTCATTGGTATGTTGCTTC 'Cadophora novi-eboraci NYC14' TCGAGAAGTTCGAGAAGGTAAGAA-GCCATTT-GCTGTCCCCT----------------------CTCTTCATCCTCTTCGCCTTATCGCAGATTTTGCCCCTCGGTGGGGCAGATTTCGGTACCCGCAATCAACAATTTTTTTTTGCGCCCGTGCATCTTCACCGCAACGCCTCGCATCTGTTGCTGCCCAACC---------------------CCCTCCGT------------CTTTCACAACACC------------ACACAACATCGCAATG-CTTTTT-GACCATTACTGACTCCCATAACAGGAAGCCGCCGAGTTGGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAACTAAAGGCCGAGCGTGAGCGTGGTATCACCATTGATATCGCTCTCTGGAAGTTCGAGACCCCCAAGTACTACGTCACCGTCATTGGTATGTTGCTTC Cadophora_malorum_A167 TCGAGAAGTTCGAGAAGGTAAGAA---TATTTCGTTGCTGTCTCAAATTTACCCCTCACCTCTCTGCCTTCTT---GCTGGGCTTATCGCAAAATTTGCCCCTCGGTGGGGCA---------TCCCACAATCGA-----TTTTTTTGCGCCCGAGCGTTTACACCGCAACGCCTCGCCGCAATTGCTGCCCAACAACAACACAACA----CTTCA-CCCTTTCCAAGTCGA---CACCATCACATCACTGCATCATA---------GCATCGCAATGGTCTTCT--ACAT--GCTGACTCCCATAACAGGAAGCCGCCGAGTTGGGCAAGGGTTCATTCAAGTATGCGTGGGTTCTTGACAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCTCTCTGGAAGTTCGAGACCCCAAAGTACTACGTCACCGTCATTGGTATGTTGTCCC 'Cadophora luteo-olivacea A175' TCGAGAAGTTCGAGAAGGTAAGAA---TATTTCGTCGCTGTCTCAAATTTACCCCTCACCTCT--GCCTTGTT---GCTGGGCTTATCGCAAAATTTGCCCCTCGGTGGGGCA---------ACCCACAATCAA-----TTTTTTTGCGCCCGAGCGTTTACACCGCAACGCCTCGCCGCAATTGCTGCCCAACAACAACACAACAA---CTTCA-CCCTTTGCAAGTCGA---CATCATCACATCACTGCATCATA----TCATAGCATTACGATG-TCCTCT--ACATATGCTGACTCTCATAACAGGAAGCCGCCGAGTTGGGCAAGGGTTCATTCAAGTATGCGTGGGTTCTTGACAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCTCTCTGGAAGTTCGAGACCCCAAAGTACTACGTCACCGTCATTGGTATGTTACCTC 'Cadophora luteo-olivacea A19' TCGAGAAGTTCGAGAAGGTAAGAA---TATTTCGTCGCTGTCTCAAATTTACCCCTCACCTCT--GCCTTGTT---GCTGGGCTTATCGCAAAATTTGCCCCTCGGTGGGGCA---------ACCCACAATCAA-----TTTTTTTGCGCCCGAGCGTTTACACCGCAACGCCTCGCCGCAATTGCTGCCCAACAACAACACAACAA---CTTCAATCCCTTCCAAGTCGA---CATCATCACATCACTGCATCATA----TTATAGCATTACGATG-TCCTCT--ACATATGCTGACTCTCATAACAGGAAGCCGCCGAGTTGGGCAAGGGTTCATTCAAGTATGCGTGGGTTCTTGACAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCTCTCTGGAAGTTCGAGACCCCAAAGTACTACGTCACCGTCATTGGTATGTTACCTC 'Cadophora luteo-olivacea A41' TCGAGAAGTTCGAGAAGGTAAGAA---TATTTCGTCGCTGTCTCAAATTTACCCCTCACCTCT--GCCTTGTT---GCTGGGCTTATCGCAAAATTTGCCCCTCGGTGGGGCA---------ACCCACAATCAA-----TTTTTTTGCGCCCGAGCGTTCACACCGCA--------CCGCAATTGCTGCCCAACAAC------ACAACAACTTCAACCCTTTCCAATTCGACAGCATCATCACATCACTGCA---------TCATAGCATTACGATG-TCCTCT--ACATATGCTGACTGTCATAACAGGAAGCCGCCGAGTTGGGCAAGGGTTCATTCAAGTATGCGTGGGTTCTTGACAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCTCTCTGGAAGTTCGAGACCCCAAAATACTACGTCACCGTCATTGGTATGTTACCTC 'Cadophora luteo-olivacea A42' TCGAGAAGTTCGAGAAGGTAAGAA---TATTTCGTCGCTGTCTCAAATTTACCCCTCACCTCT--GCCTTGTT---GCTGGGCTTATCGCAAAATTTGCCCCTCGGTGGGGCA---------ACCCACAATCAA-----TTTTTTTGCGCCCGAGCGTTCACACCGCA--------CCGCAATTGCTGCCCAACAAC------ACAACAACTTCAACCCTTTCCAATTCGACAGCATCATCACATCACTGCA---------TCATAGCATTACGATG-TCCTCT--ACATATGCTGACTGTCATAACAGGAAGCCGCCGAGTTGGGCAAGGGTTCATTCAAGTATGCGTGGGTTCTTGACAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCTCTCTGGAAGTTCGAGACCCCAAAATACTACGTCACCGTCATTGGTATGTTACCTC 'Cadophora luteo-olivacea U5' TCGAGAAGTTCGAGAAGGTAAGAA---TATTTCGTCGCTGTCTCAAATTTACCCCTCACCTCT--GCCTTGTT---GCTGGGCTTATCGCAAAATTTGCCCCTCGGTGGGGCA---------ACCCACAATCAA-----TTTTTTTGCGCCCGAGCGTTTACACCGCAACGCCTCGCCGCAATTGCTGCCCAACAACAACAACACAACAACTTCAATCATTTCCAAGTCGA---CATCATCACATCACTGCATCATA----TCATAGCATTACAATG-CCCTCT--ACATATGCTGACTCTCATAACAGGAAGCCGCCGAGTTGGGCAAGGGTTCATTCAAGTATGCGTGGGTTCTTGACAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCTCTCTGGAAGTTCGAGACCCCAAAGTACTACGTTACCGTCATTGGTATGTTACCGC 'Cadophora luteo-olivacea U8' TCGAGAAGTTCGAGAAGGTAAGAA---TATTTCGTCGCTGTCTCAAATTTACCCCTCACCTCT--GCCTTGTT---GCTGGGCTTATCGCAAAATTTGCCCCTCGGTGGGGCA---------ACCCACAATCAA-----TTTTTTTGCGCCCGAGCGTTTACACCGCAACGCCTCGCCGCAATTGCTGCCCAACAACAACAACACAACAACTTCAATCATTTCCAAGTCGA---CATCATCACATCACTGCATCATA----TCATAGCATTACAATG-CCCTCT--ACATATGCTGACTCTCATAACAGGAAGCCGCCGAGTTGGGCAAGGGTTCATTCAAGTATGCGTGGGTTCTTGACAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCTCTCTGGAAGTTCGAGACCCCAAAGTACTACGTTACCGTCATTGGTATGTTACCGC 'Cadophora luteo-olivacea U17' TCGAGAAGTTCGAGAAGGTAAGAA---TATTTCGTCGCTGTCTCAAATTTACCCCTCACCTCT--GCCTTGTT---GCTGGGCTTATCGCAAAATTTGCCCCTCGGTGGGGCA---------ACCCACAATCAA-----TTTTTTTGCGCCCGAGCGTTTACACCGCAACGCCTCGCCGCAATTGCTGCCCAACAACAACAACACAACAACTTCAATCATTTCCAAGTCGA---CATCATCACATCACTGCATCATA----TCATAGCATTACAATG-CCCTCT--ACATATGCTGACTCTCATAACAGGAAGCCGCCGAGTTGGGCAAGGGTTCATTCAAGTATGCGTGGGTTCTTGACAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCTCTCTGGAAGTTCGAGACCCCAAAGTACTACGTCACCGTCATTGGTATGTTACCGC 'Cadophora luteo-olivacea U7' TCGAGAAGTTCGAGAAGGTAAGAA---TATTTCGTCGCTGTCTCAAATTTACCCCTCACCTCT--GCCTTGTT---GCTGGGCTTATCGCAAAATTTGCCCCTCGGTGGGGCA---------ACCCACAATCAA-----TTTTTTTGCGCCCGAGCGTTTACACCGCAACGCCTCGCCGCAATTGCTGCCCAACAACAACAACACAACAACTTCAATCATTTCCAAGTCGA---CATCATCACATCACTGCATCATA----TCATAGCACTACAATG-CCCTCT--ACATATGCTGACTCTCATAACAGGAAGCCGCCGAGTTGGGCAAGGGTTCATTCAAGTATGCGTGGGTTCTTGACAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCTCTCTGGAAGTTCGAGACCCCAAAGTACTACGTCACCGTCATTGGTATGTTACCGC 'Cadophora luteo-olivacea U21' TCGAGAAGTTCGAGAAGGTAAGAA---TATTTCGTCGCTGTCTCAAATTTACCCCTCACCTCT--GCCTTGTT---GCTGGGCTTATCGCAAAATTTGCCCCTCGGTGGGGCA---------ACCCACAATCAA-----TTTTTTTGCGCCCGAGCGTTTACACCGCAACGCCTCGCCGCAATTGCTGCCCAACAACAACAACACAACAACTTCAATCATTTCCAAGTCGA---CATCATCACATCACTGCATCATA----TCATAGCATTACAATG-CCCTCT--ACATATGCTGACTCTCATAACAGGAAGCCGCCGAGTTGGGCAAGGGTTCATTCAAGTATGCGTGGGTTCTTGACAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCTCTCTGGAAGTTCGAGACCCCAAAGTACTACGTTACCGTCATTGGTATGTTACCGC 'Cadophora luteo-olivacea U22' TCGAGAAGTTCGAGAAGGTAAGAA---TATTTCGTCGCTGTCTCAAATTTACCCCTCACCTCT--GCCTTGTT---GCTGGGCTTATCGCAAAATTTGCCCCTCGGTGGGGCA---------ACCCACAATCAA-----TTTTTTTGCGCCCGAGCGTTTACACCGCAACGCCTCGCCGCAATTGCTGCCCAACAACAACAACACAACAACTTCAATCATTTCCAAGTCGA---CATCATCACATCACTGCATCATA----TCATAGCATTACAATG-CCCTCT--ACATATGCTGACTCTCATAACAGGAAGCCGCCGAGTTGGGCAAGGGTTCATTCAAGTATGCGTGGGTTCTTGACAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCTCTCTGGAAGTTCGAGACCCCAAAGTACTACGTTACCGTCATTGGTATGTTACCGC 'Cadophora luteo-olivacea U53' TCGAGAAGTTCGAGAAGGTAAGAA---TATTTCGTCGCTGTCTCAAATTTACCCCTCACCTCT--GCCTTGTT---GCTGGGCTTATCGCAAAATTTGCCCCTCGGTGGGGCA---------ACCCACAATCAA-----TTTTTTTGCGCCCGAGCGTTTACACCGCAACGCCTCGCCGCAATTGCTGCCCAACAACAACAACACAACAACTTCAATCATTTCCAAGTCGA---CATCATCACATCACTGCATCATA----TCATAGCATTACAATG-CCCTCT--ACATATGCTGACTCTCATAACAGGAAGCCGCCGAGTTGGGCAAGGGTTCATTCAAGTATGCGTGGGTTCTTGACAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCTCTCTGGAAGTTCGAGACCCCAAAGTACTACGTTACCGTCATTGGTATGTTACCGC 'Cadophora luteo-olivacea U56' TCGAGAAGTTCGAGAAGGTAAGAA---TATTTCGTCGCTGTCTCAAATTTACCCCTCACCTCT--GCCTTGTT---GCTGGGCTTATCGCAAAATTTGCCCCTCGGTGGGGCA---------ACCCACAATCAA-----TTTTTTTGCGCCCGAGCGTTTACACCGCAACGCCTCGCCGCAATTGCTGCCCAACAACAACAACACAACAACTTCAATCATTTCCAAGTCGA---CATCATCACATCACTGCATCATA----TCATAGCATTACAATG-CCCTCT--ACATATGCTGACTCTCATAACAGGAAGCCGCCGAGTTGGGCAAGGGTTCATTCAAGTATGCGTGGGTTCTTGACAAGCTAAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCTCTCTGGAAGTTCGAGACCCCAAAGTACTACGTTACCGTCATTGGTATGTTACCGC ; END; BEGIN LABELS; CHARGROUPLABEL Character_Matrix; END; BEGIN SETS; CHARSET Character_Matrix = 1 - 460; CHARPARTITION * UNTITLED = Character_Matrix : 1 - 460; CHARPARTITION matrices = Character_Matrix : 1 - 460; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 460; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 460; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 460; END; BEGIN TREES; Title TEF; ID 015ea391933366; LINK Taxa = Taxa; TRANSLATE [0] 1 Cadophora_finlandica, [1] 2 Cadophora_orientamericana_CTC1, [2] 3 Cadophora_orientamericana_CTC2, [3] 4 Cadophora_orientamericana_CTC4, [4] 5 Cadophora_orientamericana_CTC5, [5] 6 Cadophora_orientamericana_MAC2, [6] 7 Cadophora_orientamericana_MDC1, [7] 8 Cadophora_orientamericana_NHC1, [8] 9 Cadophora_orientamericana_NHC2, [9] 10 Cadophora_orientamericana_NHC3, [10] 11 Cadophora_orientamericana_NYC3, [11] 12 Cadophora_orientamericana_NYC6, [12] 13 Cadophora_orientamericana_NYC9, [13] 14 Cadophora_orientamericana_NYC11, [14] 15 Cadophora_orientamericana_NYC12, [15] 16 Cadophora_orientamericana_VAC1, [16] 17 Cadophora_orientamericana_VTC1, [17] 18 Cadophora_orientamericana_OHC1, [18] 19 Cadophora_spadicis_RIC1, [19] 20 Cadophora_spadicis_111743, [20] 21 Cadophora_spadicis_RIC3, [21] 22 Cadophora_spadicis_QCC1, [22] 23 Cadophora_fastigiata_A168, [23] 24 Cadophora_melinii_A164, [24] 25 Cadophora_melinii_U11, [25] 26 Cadophora_melinii_ONC1, [26] 27 'Cadophora novi-eboraci 101359', [27] 28 'Cadophora novi-eboraci NYC2', [28] 29 'Cadophora novi-eboraci NYC1', [29] 30 'Cadophora novi-eboraci NYC13', [30] 31 'Cadophora novi-eboraci NYC14', [31] 32 Cadophora_malorum_A167, [32] 33 'Cadophora luteo-olivacea A175', [33] 34 'Cadophora luteo-olivacea A19', [34] 35 'Cadophora luteo-olivacea A41', [35] 36 'Cadophora luteo-olivacea A42', [36] 37 'Cadophora luteo-olivacea U5', [37] 38 'Cadophora luteo-olivacea U8', [38] 39 'Cadophora luteo-olivacea U17', [39] 40 'Cadophora luteo-olivacea U7', [40] 41 'Cadophora luteo-olivacea U21', [41] 42 'Cadophora luteo-olivacea U22', [42] 43 'Cadophora luteo-olivacea U53', [43] 44 'Cadophora luteo-olivacea U56'; TREE 'PAUP_1' = (1:0.1662305,((32:0.013032,(((33:0.002485,34:0.007297):0.0,(35:0.0,36:0.0):0.010612):0.002093,(40:0.002416,(39:0.0,(44:0.0,(43:0.0,(42:0.0,(41:0.0,(37:0.0,38:0.0):0.0):0.0):0.0):0.0):0.002415):0.0):0.015508):0.019851):0.175948,((27:0.024494,(31:0.0,(30:0.0,(28:0.0,29:0.0):0.0):0.0):0.008079):0.042653,(((22:0.002818,(21:0.0,(19:0.0,20:0.0):0.0):0.002743):0.022987,(26:0.0,(25:0.0,(23:0.0,24:0.0):0.0):0.0):0.04195):0.00308,((18:0.0,(15:0.0,(12:0.0,13:0.0):0.0):0.0):0.00374,((10:0.0,(9:0.0,(8:0.0,(7:0.0,(3:0.0,5:0.0):0.0):0.0):0.0):0.0):0.0,(2:0.0,(4:0.0,(6:0.0,(11:0.0,(14:0.0,(16:0.0,17:0.0):0.0):0.0):0.0):0.0):0.0):0.002695):0.00167):0.052638):0.00000343997):0.017937):0.1662305)[% ] [% ] [% setBetweenBits = selected ]; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1505982817033; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 8198995115495764722; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2608539841570533479; mqVersion 330; checksumv 0 3 3897727466 null getNumChars 460 numChars 460 getNumTaxa 44 numTaxa 44 short true bits 15 states 15 sumSquaresStatesOnly 386500.0 sumSquares 386500.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1 errorReportedDuringRun; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 180; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1100 626; setLocation 46 45; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #8198995115495764722 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 015ea391933366; toggleUseWeights off; endTell; setAssignedID 9275.1505982794007.1795156593113007048; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 920 554; setLocation 46 45; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.arrow; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow bootstrapFrequency; toggleShow posteriorProbability; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #2608539841570533479 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 920 554; setLocation 46 45; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;