#NEXUS [written Fri Sep 05 12:06:09 CAT 2014 by Mesquite version 2.75 (build 564) at TheBeast/137.215.125.197] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=34; TAXLABELS Geobacillus_sp._Y412MC52 Geobacillus_sp._Y412MC61 'Geobacillus sp. C56-T3' Geobacillus_sp._CAMR12739 Geobacillus_sp._GHH01 Geobacillus_sp._WSUCF1 Geobacillus_sp._A8 G._kaustophilus_Blys Geobacillus_sp._MAS1 Geobacillus_sp._CAMR5420 'Geobacillus sp. C56-T2' 'G. stearothermophilus T-6' Geobacillus_sp._JF8 'G. thermodenitrificans NG80-2' Geobacillus_sp._G11MC16 G._thermodenitrificans_DSM465T 'G. thermoglucosidasius C56-YS93' G._caldoxylolyticus_CIC9 Bacillus_sp._2A57CT2 'Bacillus halodurans C-125' Amphibacillus_xylanus_NBRC_15112 Clostridium_ultunense_Esp Paenibacillus_polymyxa_E681 'Paenibacillus terrae HPL-003' 'Paenibacillus sp. Aloe-11' Paenibacillus_lactis_154 Paenibacillus_vortex_V453 Paenibacillus_sp._Y412MC10 Paenibacillus_mucilaginosus_3016 Paenibacillus_mucilaginosus_KNP414 'Paenibacillus sp. JDR-2' Paenibacillus_curdlanolyticus_YK9 Desmospora_sp._8437 Alkaliphilus_metalliredigens_QYMF ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=586; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX Geobacillus_sp._Y412MC52 MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDDRHPCWQKCADVGIDAS-DGMIVLRRDIFANGKSVCRINGKLVTTAVLRDIGATLVDIHGQHEHQELMDPSRHLPLLDEFGGLEAAEALARYRAVYERYEELGNKLKKLSENEQQMAHRLDLLTFQLREIEQAALELGEDERLMEEKVRIVNFQKIYTALQKSYEALSGEGRG---LDSIGEAMRHLDDVAGMDAA-LKDAHETTSNCYYLLEEVMYKLRDQIEEMEYDPERLDAIESRLAEIGQLKRKYGATIADILHYAETIAEEIETIENRETHVHELKQQLALVTDELLTEAKNVTAVRQTYAQRLIERIHQELKDLYMDKTKFDIVFAKREGSLDAPLVDGVPVRFQEDGIDVVEFYISTNVGEPLKPLVKVASGGELSRIMLALKTIFSKHQG-VTSIVFDEVDTGVSGRVAQAMAEKIYRIASQSQVLCISHLPQVAAMADTHLLIAKETDGERTKTVVRKLNEEEKVKEIGRMISGVEMTELTKRHAKELLELAAKMKH------- Geobacillus_sp._Y412MC61 MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDDRHPCWQKCADVGIDAS-DGMIVLRRDIFANGKSVCRINGKLVTTAVLRDIGATLVDIHGQHEHQELMDPSRHLPLLDEFGGLEAAEALARYRAVYERYEELGNKLKKLSENEQQMAHRLDLLTFQLREIEQAALELGEDERLMEEKVRIVNFQKIYTALQKSYEALSGEGRG---LDSIGEAMRHLDDVAGMDAA-LKDAHETTSNCYYLLEEVMYKLRDQIEEMEYDPERLDAIESRLAEIGQLKRKYGATIADILHYAETIAEEIETIENRETHVHELKQQLALVTDELLTEAKNVTAVRQTYAQRLIERIHQELKDLYMDKTKFDIVFAKREGSLDAPLVDGVPVRFQEDGIDVVEFYISTNVGEPLKPLVKVASGGELSRIMLALKTIFSKHQG-VTSIVFDEVDTGVSGRVAQAMAEKIYRIASQSQVLCISHLPQVAAMADTHLLIAKETDGERTKTVVRKLNEEEKVKEIGRMISGVEMTELTKRHAKELLELAAKMKH------- 'Geobacillus sp. C56-T3' MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDDRHPCWQKCADVGIDAS-DGMIVLRRDIFANGKSVCRINGKLVTTAVLRDIGATLVDIHGQHEHQELMDTSRHLPLLDEFGGLEAAEALARYRAVYERYEELGNKLKKLSENEQQMAHRLDLLTFQLREIEQAALEPGEDERLMEEKVRIVNFQKIYTALQKSYEALSGEGRG---LDSIGEAMRHLDDVAGMDAT-LKDAHETTSNCYYLLEEVMYKLRDQIEEMEYDPERLDAIESRLAEIGQLKRKYGATIADILHYAETIAEEIETIENRETHVHELKQQLALVTDELLTEAKNVTAVRQTYAQRLIERIHQELKDLYMDKTKFDIVFAKREGSLDAPLVDGVPVRFQEDGIDVVEFYISTNVGEPLKPLVKVASGGELSRIMLALKTIFSKHQG-VTSIVFDEVDTGVSGRVAQAMAEKIYRIASQSQVLCISHLPQVAAMADTHLLIAKETDGERTKTVVRKLNEEEKVKEIGRMISGVEMTELTKRHAKELLELAAKMKH------- Geobacillus_sp._CAMR12739 MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDDRHPCWQKCADVGIDAS-DGMIVLRRDIFANGKSVCRINGKLVTMAVLRDIGATLVDIHGQHEHQELMDPSRHLSLLDEFGGLEAAEALARYRAVYERYEELGNKLKKLSENEQQMAHRLDLLTFQLREIEQAALEPGEDERLMEEKVRIVNFQKLYTALQKSYEALSGEGRG---LDSIGEAMRHLDDVAGMDAA-LKDAHETTSNCYYLLEEVMYKLRDQIEEMEYDPERLDAIESRLAEIGQLKNEYGATIADILHYAETIAEEIETIENRETHVHELKQQLALVTDELLTEAKNVTAVRQTYAQRLIERIHQELKDLYMDKTKFDIVFAKREGSLDAPLVDGVPVRFQEDGIDVVEFYISTNVGEPLKPLVKVASGGELSRIMLALKTIFSKHQG-VTSIVFDEVDTGVSGRVAQAMAEKIYRIASQSQVLCISHLPQVAAMADTHLLIAKETDGERTKTVVRKLNEEEKVKEIGRMISGVEMTELTKRHAKELLELAAKMKH------- Geobacillus_sp._GHH01 MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDDRHPCWQKCADVGIDAS-DGMIVLRRDIFANGKSVCRINGKLVTTAVLRDIGATLVDIHGQHEHQELMDPSRHLPLLDEFGGLEAAEALARYRAVYERYEELGNKLKKLSENEQQMAHRLDLLTFQLREIEQAALEPGEDERLMEEKVRIVNFQKIYTALQKSYEALSGEGRG---LDSIGEAMRHLDDVAGMDAA-LKDAHETTSNCYYLLEEVMYKLRDQIEEMEYDPERLDAIESRLAEIGQLKRKYGATIADILHYAETIAEEIETIENRETHVHELKQQLALVTDELLTEAKNVTAVRQTYAQRLIERIHQELKDLYMDKTKFDIVFAKREGSLDAPLVDGVPVRFQEDGIDVVEFYISTNVGEPLKPLVKVASGGELSRIMLALKTIFSKHQG-VTSIVFDEVDTGVSGRVAQAMAEKIYHIASQSQVLCISHLPQVAAMADTHLLIAKETDGERTKTVVRKLNEEEKVKEIGRMISGVEMTELTKRHAKELLELAAKMKH------- Geobacillus_sp._WSUCF1 MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDDRHPCWQKCADVGIDAS-DGMIVLRRDIFANGKSVCRINGKLVTTAVLRDIGATLVDIHGQHEHQELMDPSRHLPLLDEFGGLEAAEALARYRAVYERYEELGKKLKKLSENEQQMAHRLDLLTFQLREIEQAALEPGEDERLMEEKVRIVNFQKIYTALQKSYEALSGEGRG---LDSIGEAMRHLDDVAGMDAA-LKDAHETTSNCYYLLEEVMYKLRDQIEEMEYDPERLDAIESRLAEIGQLKRKYGATIADILHYAETIAEEIETIENRETHVHELKQQLALVTDELLTEAKNVTAVRQTYAQRLIERIHQELKDLYMDKTKFDIVFAKREGSLDAPLVDGVPVRFQEDGIDVVEFYISTNVGEPLKPLVKVASGGELSRIMLALKTIFSKHQG-VTSIVFDEVDTGVSGRVAQAMAEKIYHIASQSQVLCISHLPQVAAMADTHLLIAKETDGERTKTVVRKLNEEEKVKEIGRMISGVEMTELTKRHAKELLELAAKMKH------- Geobacillus_sp._A8 MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDDRHPCWQKCADVGIDAS-DGMIVLRRDIFANGKSVCRINGKLVTTAVLRDIGATLVDIHGQHEHQELMDPSRHLPLLDEFGGLEAAEALARYRAVYERYEELGNKLKKLSENEQQMAHRLDLLTFQLREIEQAALEPGEDERLMEEKVRIVNFQKIYTALQKSYEALSGEGRG---LDSIGEAMRHLDDVAGMDAA-LKDAHETTANCYYLLEEVMYKLRDQIEEMEYDPERLDAIESRLAEIGQLKRKYGATIADILHYAETIAEEIETIENRETHVHELKQQLALVTDELLTEAKNVTAVRQTYARRLIERIHQELKDLYMDKTKFDIVFAKREGSLDAPLVDGVPVRFQEDGIDVVEFYISTNVGEPLKPLVKVASGGELSRIMLALKTIFSKHQG-VTSIVFDEVDTGVSGRVAQAMAEKIYRIASQSQVLCISHLPQVAAMADTHLLIAKETDGERTKTVVRKLNEEEKVKEIGRMISGVEMTELTKRHAKELLELAAKMKH------- G._kaustophilus_Blys MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDDRHPCWQKCADVGIDAS-DGMIVLRRDIFANGKSVCRINGKLVTTAVLRDIGATLVDIHGQHEHQELMDPSRHLPLLDEFGGLEAAEALARYRAVYERYEELGNKLKKLSENEQQMAHRLDLLTFQLREIEQAALEPGEDERLMEEKVRIVNFQKIYTALQKSYEALSGEGRG---LDSIGEAMRHLDDVAGMDAA-LKDAHETTANCYYLLEEVMYKLRDQIEEMEYDPERLDAIESRLAEIGQLKRKYGATIADILHYAEMIAEEIETIENRETHVHELKQQLALVTDELLTEAKNVTAVRQTYARRLIERIHQELKDLYMDKTKFDIVFAKREGSLDAPLVDGVPVRFQEDGIDVVEFYISTNVGEPLKPLVKVASGGELSRIMLALKTIFSKHQG-VTSIVFDEVDTGVSGRVAQAMAEKIYRIASQSQVLCISHLPQVAAMADTHLLIAKETDGERTKTVVRKLNEEEKVKEIGRMISGVEMTELTKRHAKELLELAAKMKH------- Geobacillus_sp._MAS1 MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDDRHPCWQKCADVGIDAS-DGMIVLRRDIFANGKSVCRINGKLVTTAVLRDIGATLVDIHGQHEHQELMDPSRHLPLLDEFGGLEAAEALARYRAVYERYEELGNKLKKLSENEQQMAHRLDLLTFQLREIEQAALEPGEDERLMEEKVRIVNFQKIYTALQKSYEALSGEGRG---LDSIGEAMRHLDDVAGMDAA-LKDAHETTANCYYLLEEVMYKLRDQIEEMEYDPERLDAIESRLAEIGQLKRKYGATIADILHYAEMIAEEIETIENRETHVHELKQQLALVTDELLTEAKNVTAVRQTYARRLIERIHQELKDLYMDKTKFDIVFAKREGSLDAPLVDGVPVRFQEDGIDVVEFYISTNVGEPLKPLVKVASGGELSRIMLALKTIFSKHQG-VTSIVFDEVDTGVSGRVAQAMAEKIYRIASQSQVLCISHLPQVAAMADTHLLIAKETDGERTKTVVRKLNEEEKVKEIGRMISGVEMTELTKRHAKELLELAAKMKH------- Geobacillus_sp._CAMR5420 MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDDRHPCWQKCADVGIDAS-DGMIVLRRDIFANGKSVCRINGKLVTTAVLRDIGATLVDIHGQHEHQELMDPSRHLPLLDEFGGLEAAEALARYRAVYERYEELGNKLKKLSENEQQMAHRLDLLTFQLREIEQAALEPGEDERLMEEKVRIVNFQKIYTALQKSYEALSGEGRG---LDSIGEAMRHLDDVAGMDAA-LKDAHETTANCYYLLEEVMYKLRDQIEEMEYDPERLDAIESRLAEIGQLKRKYGATIADILHYAETIAEEIETIENRETHVHELTQQLALVTDELLTEAKNVTAVRQTYARRLIERIHQELKDLYMDKTKFDIVFAKREGSLDAPLVDGVPVRFQEDGIDVVEFYISTNVGEPLKPLVKVASGGELSRIMLALKTIFSKHQG-VTSIVFDEVDTGVSGRVAQAMAEKIYRIASQSQVLCISHLPQVAAMADTHLLIAKETDGERTKTVVRKLNEEEKVKEIGRMISGVEMTELTKRHAKELLELAAKMKH------- 'Geobacillus sp. C56-T2' MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDDRHPCCQTCADAGIDVS-DGMVVLRRDILANGKSVCRINGKLVTTATLREIGATLVDIHGQHEHQELMDPARHLPLLDEFGGAETAAALAAYRAVYERYETLVKKIKKLSENEQQMAHRLDLLTFQLREIEQAALEPGEDERLMEEKVRIANFQKIYTAIQRSYEALAGEGRG---LDSIGEAMRQLADVAAMDAA-LKEAHDATANSYYLLEEVLYKLRDQLEELEYDPLRLDAIESRLADIQQLKRKYGATIADILQYAETIAEEIEAIENRETHVHELERQLAVVTDELLAEAKRLTNVRQAHARQLCERIHQELKDLYMDKTKFDIVFAKREGPLDAPLVDGVPVKFHEDGVDVVEFYLSTNVGEPLKPLAKVASGGELSRIMLALKTIFSKHQG-VTSIIFDEVDTGVSGRVAQAMAEKIYRIANQSQVLCISHLPQVAAMADTHLLIAKETDGERTKTVVRKLDEEEKVKEIGRMISGVEMTELTKRHAKELLELAAKMKQ------- 'G. stearothermophilus T-6' MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSSEFVRFGAEKAEIEGLFLLDDDRHPCCQKCADIGVDVS-DGMVVLRRDILASGKSICRINGKLVTTAVLRDIGSTLVDIHGQHEHQELMDPSRHLPLLDEFGGAETAAALARYRALYEEREALVKKLKKLSENEQQMAHRLDLLTFQLREIEQAGLEIGEDERLMEEKVRIVNFQKIYQAIQHSYEALAGEGRG---LDSVGQAMGHLEDVAAMDAE-LKEAHEMVANSYYLLEEVMYRLRDQLEELEYDPMRLDAIESRLAEIQQLKRKYGATIADILQYAEAIAEEIETIENRDMHVHDLERQLADVTGKLLAEAKKVTSIRQAYARQLIERIQQELKDLYMEKTQFDIVFAKREGPLDAPLVDGVPVKFAEDGIDVVEFYLSTNVGEPLKPLAKTASGGELSRIMLALKTIFSKHQG-VTSIIFDEVDTGVSGRVAQAIAEKIYRIASQSQVLCISHLPQVAAMADTHLLIVKETDGTRTKTAVKKLDEEEKVKEIGRMISGVEMTELTKQHAKELLELAAKMKR------- Geobacillus_sp._JF8 MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDNRHPCCQKCAEVGIDVN-EGMVVLRRDILANGKSVCRINGKLVTTAVLRDIGATLVDIHGQHEHQELMDPSRHLPLLDEFGGAEVAEALARYRAVYKQHEALVKKLKKLSENEQQMAHRLDLLTFQLREIEQATLEPGEDERLMEEKVRIVNFQKIYGAIQKSYEALAGEGRG---LDSIGEAMIQLDDVAAMDAS-LKEAHETVANSYYLLEDVMYKLRDQLEELEYDPARLDAIESRLAEIQQLKRKYGATIADILQYAGAIAEEIETIENRETHVHELERQLAAVTGDLLVEAKHVTNVRQAYARDLIGRIHQELKDLYMEKTQFDILFAKREGPLDAPLVDGVPVKFHEDGIDAVEFYISTNVGEPLKPLVKVASGGELSRIMLALKTIFSKHQG-VTSIIFDEVDTGVSGRVAQAIAEKIYRIASGSQVLCISHLPQVAAMADTHLLIAKETDGTRTKTVVKKLDEEEKVKEIGRMISGVEMTELTKQHAKELLELAAKMKQ------- 'G. thermodenitrificans NG80-2' MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDDRHPCCQKCAEVGIDVS-EGMVVLRRDILANGKSVCRINGKLVTTAILREVGATLVDIHGQHEHQELMDPSRHLPLLDEFGGAEMAEALARYRAVYEQHEALVKKLKKLSENEQQMAHRLDLLTFQLREIEQATLELGEDERLMEEKVRIVNFQKIYSAIQKSYEALSGEGRG---LDSIGEAMGHLDDVAAMDAA-LKEAYETVANSYYLLEEVMYKLRDQLEELEYDPARLDAIESRLAEIQQLKRKYGATIADILQYAEAIAEEIETIENRETHVHELERQLAAVTSDLLMEAENVTNVRRTYARELIERIHQELKDLYMEKTQFDIIFAKREGPLDAPLVDGVPVKFHEDGIDVVEFYISTNVGEPLKPLAKVASGGELSRIMLALKTIFSKHQG-VTSIIFDEVDTGVSGRVAQAIAEKIYRIASGSQVLCISHLPQVAAMADTHLFIAKETDGTRTKTVVKKLDEEEKVKEIGRMISGVEMTELTKQHAKELLELAAKMKQ------- Geobacillus_sp._G11MC16 MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDDRHPCCQKCAEVGIDVS-EGMVVLRRDILANGKSVCRINGKLVTTAILREVGATLVDIHGQHEHQELMDPSRHLPLLDEFGGAEMAEALARYRAVYEQHEALVKKLKKLSENEQQMAHRLDLLTFQLREIEQATLELGEDERLMEEKVRIVNFQKIYSAIQKSYEALSGEGRG---LDSIGEAMGHLDDVAAMDAA-LKEAYETVANSYYLLEEVMYKLRDQLEELEYDPARLDAIESRLAEIQQLKRKYGATIADILQYAEAIAEEIETIENRETHVHELERQLAAVTSDLLMEAENVTNVRRTYARELIERIHQELKDLYMEKTQFDIIFAKREGPLDAPLVDGVPVKFHEDGIDVVEFYISTNVGEPLKPLAKVASGGELSRIMLALKTIFSKHQG-VTSIIFDEVDTGVSGRVAQAIAEKIYRIASGSQVLCISHLPQVAAMADTHLFIAKETDGTRTKTVVKKLDEEEKVKEIGRMISGVEMTELTKQHAKELLELAAKMKQ------- G._thermodenitrificans_DSM465T MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDDRHPCCQKCAEVGIDVS-EGMVVLRRDILANGKSVCRINGKLVTTAILREVGATLVDIHGQHEHQELMDPSRHLPLLDEFGGAEMAEALARYRAVYEQHEALVKKLKKLSENEQQMAHRLDLLTFQLREIEQATLELGEDERLMEEKVRIVNFQKIYSAIQKSYEALSGEGRG---LDSIGEAMGHLDDVAAMDAA-LKEAYETVANSYYLLEEVMYKLRDQLEELEYDPARLDAIESRLAEIQQLKRKYGATIADILQYAEAIAEEIETIENRETHVHELERQLAAVTSDLLMEAENVTNVRRTYARELIERIHQELKDLYMEKTQFDIIFAKREGPLDAPLVDGVPVKFHEDGIDVVEFYISTNVGEPLKPLAKVASGGELSRIMLALKTIFSKHQG-VTSIIFDEVDTGVSGRVAQAIAEKIYRIASGSQVLCISHLPQVAAMADTHLFIAKETDGTRTKTVVKKLDEEEKVKEIGRMISGVEMTELTKQHAKELLELAAKMKQ------- 'G. thermoglucosidasius C56-YS93' LLAELSIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIQLLIGGRGSAEFVRYGEEKAEIEGLFLLDNENHPCYDKCAEVGIDIS-EGMVVLRREIFANGKSVCRVNGKLVTTAILRDIGSTLVDIHGQHEHQELMDPSRHLPLLDEYGGAEIAAALEEYRAVYEKYEQLRKKLKKLNENEQQMAHRLDLLTFQLDEIQKANLQVNEDEQLMEEKVKIMNFQKIYEALKHSYEALSGEHRG---LDWIGLAMSHLEDVTSISPA-LKEAYETIANSYYLLEDITYKLSDELEQLEYDPARLDFIESRLSEINQLKRKYGATIEEILQYAEKIAEEIDELQHRETHIHELQKELKSVTEDLLIEAKNVTNVRQKYAKMLINHIHQELKDLYMEKTQFDIVFTKREGTLDAPLLDGVPVNFHEDGVDEVEFYISTNVGEPLKPLAKIASGGELSRIMLALKSIFSKHQG-VTSIIFDEVDTGVSGRVAQAIAEKIYRVSIGSQVLCISHLPQVAAMADTHLFIAKETDGNRTRTSVKTLSDEEKVKEIGRMISGVEITELTKQHAKELLELAAKIKG------- G._caldoxylolyticus_CIC9 LLAELSIKNFAIIESLSISFEKGLTVLTGETGAGKSIIIDAIYLLIGGRGSAEFVRYGEEKAEIEGLFLLNDETHPCYGKCAEVGIDIS-EGMVVLRREIFATGKSVCRVNGKLVTTAVLREIGSTLVDIHGQHEHQELMDPARHLPLLDEFGGAEIAEALAEYRSVYEKYEQLRKKLKKLNENEQQMAHRLDLLTFQLNEIQQANLQPNEDEQLMEEKVKIVNFQKIYEALKHSYEALSGEQRG---LDWIGLAMSHLDDVASIDPE-LKEVYETIANSYYLLEDIMYKLRDQLEQLEYDPYRLDLIESRLGEINQLKRKYGPTIEEILQYAEKISEEIDTIRNREIHVDELQKELKSVTEDLLIEAKNVTNVRKKYAKMLIDRIHQELKDLYMEKTQFDIVFAKREGPLDAPLLDGVPVKFHEDGVDVVEFYISTNVGEPLKPLAKIASGGELSRIMLALKSIFSKHQG-VTSIIFDEVDTGVSGRVAQAIAEKIYRISIDSQVLCISHLPQVAAMADTHLFIAKETDGTRTKTLVKALTEEEKVKEIGRMISGVEITELTKKHAKELLELATKIKQ------- Bacillus_sp._2A57CT2 MLNEISIRNFAIIEALSVSFEKGLTVLTGETGAGKSIIIDAIHLLAGGRGSAEFVRHGEDKAEIEGLFILDDLKHPCYKRSAEFGIEIE-DGMIVLRRDISKTGKSVCRVNGKLVTISVLREIGSSLIDIHGQHEHQELMDETFHLPLLDQFGGSKLSAALTEYQDIYRLYENTLKKLKNLSENEQQMAHRLDLIQFQLDEIQSAQLKLNEDEDLIEEKRKLSNFERIFDSLQSGYNALQGEQKG---LDWIGMVMGYMNDAAELDPA-YKEIAENVANSFYLLEDAARSLRNEMDFMEYDPQRLNEIESRLNEINGLKRKYGKTVEEVLEYAAQIEEEIETLLNKETHIDKLQKEVAALKKDLLVEGEELSKLRRKSALKLTKLIHKELKELYMEKTVFEVRFFSDS------------EVFLKNGIDRAEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQG-VTSIIFDEVDTGVSGRVAQAIAEKIHHVSVDSQVLCISHLPQVAAMADTHLFIAKNTKDGRTKTTVKPLTEDEKIKEIGRMISGVEITDLTKEHAKELLHLANQLK-------- 'Bacillus halodurans C-125' MLVELSIKQFAIIEQLTVSFDKGLTVLTGETGAGKSIIIDAIGLLLGGRGSAEYVRYGEKRAEIEGLFILE-PKHPAFAKAEALGIQAD-DGMIVLRRDVTNQGKSICRINGKLVTLGILREIGQSLVDIHGQHEHQTLLHKEQHLSLLDHFAGPPLETVLDEYKELYKQYLALERQLAQLTENEKEMAQKTDLFQYQLKEIEAANLEPGEDKRLEAERLKLANAEKLFKSVHDAYNNLYGEGRG---LEWINNALTHIEDASSYDPE-LGKLQQHVQEQYYLLEEAMFTLRDYLDKLEFDPTRLEMIESRLHELQKLKRKYGDSVDAIVEYASTIEEQLDSILHKDDRIKQLEQSLETMRLDLEVESAALTNIRKQIAMELTESIHEQLRALYMEKTSFEVKFHETAEG---------KKPFRENGVDDVEFYLSTNPGEPVKPLAKVASGGEISRIMLALKTIFSNHQG-VTSVIFDEVDTGVSGRVAQAIAEKIRHISVGSQVLCISHLPQVAAMADTHLYISKKEVGGRVTTEVRALKDEEKVEEIARMIAGVEMTELTKEHAKELLDLATSIKCNH----- Amphibacillus_xylanus_NBRC_15112 MLSELSIQNFTIINQLTISFNDGLTVLTGETGAGKSIIIDAIELLTGGRGSVEYVRHGKNKAVLEGLFTIDNPKHAIYKLFDKYGIEYDQEGMIILHRTISAKGKSICRVNGSLVTLAILREFGQTLIDIHSQHETQSLLDSSRHLSLLDMFNQEHENDRFNDYQRVYNKLKKAKVVYDSLKNNEQESIQRLDLLRFQLNEITQAELSVNEDIELRQEREKLVNFEQIYENVTEAYNSLRGEHKG---LDWLSMGSAALETASSLEPE-LEKLSESYSNQYYMLEEISIQLRNYLDQMSYEPERLAEIESRLNEIQLLIRKYGSNVNEIIEYAAEIEDEIETLENRDQSLQEMADEINELSEDALIEAKQLHDRRVQGAKRLIDVIKAELIDLYMEKTQFETEIEIRAGKPGDPELSGKPVHLGENGFDQVRFLLSTNPGEPVKPLDKVASGGELSRIMLAFKKVFAKHQG-VTSVIFDEVDTGVSGRVAQAIAEKIHTISIDSQVLCITHLPQVAAMADHHLLIEKIASQQETYTRVKQLTEQERIEELARMTTGTSLTDTSVSYAKELISSAKQFKITQ----- Clostridium_ultunense_Esp MIVELTIRNFAIIEEVHLQFHQGLNVLTGETGAGKSILLDALGLLLGGRGSQEMIRYGAERTEVEGLFQIG-ESHPIASMLNEFGIDGE-EGMLILHREMGKSGKSICRINGKLVPLSFLREIGEKILHIHSQEDHHQIMQTTQHLHWLDAYGARTISEKLREYKEIFHQYQRIYSDYEHLRQDEKETVQRIDLLRYQYQEITQASLEPHEEEKLTEERSRLVHAEKITYHGEGAYNALTGENKA---LDWLGMAMGHLEEVAEVEPF-LKEKFQQVEEAFFLLEEVSRDLSAFLDELDVDQGRLSEVEDRLHLIQQLKRKYGDSIHAILEYAATIEEDLERLENKDFLLQKYVKELTELKEELLLAAAELTETRCKAADEMSAAIHQELKHLYLDKAKFRVQVEDIKDDLVG---ASLEIKGGEYGLNKVEFLVATNPGEPLKPLTKIASGGELSRIALALRTVLAKVDD-VDTLVFDEVDTGVSGRISQAIGEKLHHISKERQVLAITHHPQVAAYADKHYLIQKETLGERAITQVKELSEEERIQELARMIGGKEITPSALQHARELRDASRGSGV------- Paenibacillus_polymyxa_E681 MLVTLSIRNLAVVEAVDVHFYKGFHVLSGETGAGKSIIIDALGLIAGGRGSADLVRYGCDKAEMEALFELP-VKHPVWNTLEEQGIKANAEEHLLIRRELTVQGKSSSRINGQMVNLTMLREVGEQLVNIHGQHEHQSLLRADRHLALLDTFGDSVIGPVKTLYRERYNAFVKAEKEVRELQSSSQKAYQLLDMYRFQLEEIAAAELKLGEDELLAEERVKLSHSEKMMDGISGAYELLSGR-GG---LDTINNVLSRLNDVQSYDNKSLQPIAEQIQSAFYQLEDAAFQLRSYREDIEFNPGKLHEVEQRLNQITGLQRKYGDSIEQILEYYSRIEQETDLLENKDERLEQLIAKRDELLSDLLEISEELTEAREICAEELAEQVEQELKDLQMERTSLKVRIDPIEDP-RGYEYKGLKVRPTKQGIDNAEFLISPNPGEPLRPLGKIASGGELSRIMLAMKSIFARHDQ-IPVLIFDEVDTGVSGRAAQSIAEKLYRLSSVCQVFSITHLPQVACMADHQYLIEKNVHDGRTMTQIEGLTEDGRVKELARMLGGVEITEKTLHHAQEMLNLAEGKKA------- 'Paenibacillus terrae HPL-003' MLVTLSIRNLAVVEAVDVHFYKGFHVLTGETGAGKSIIIDALGLIAGGRGSADLVRYGCDKAEMEALFELP-VKHPVWATLEEQGIKANAEEHLLIRRELTVQGKSSSRINGQMVNLTMLREVGEQLVNIHGQHEHQSLLRADRHLALLDTFGDSVIGPVKTLYRERYNAFVKAEKEVRELQSSSQKAYQLLDMYRFQLEEIAAAELKLGEDELLAEERVKLSHSEKMMDGISGAYDLLSGR-GG---LDMINNVLSRLNDVQSYDSKSLQPIAEQIQSAFYQLEDAAFQLRSYREDIEFNPGKLHEVEQRLNQITGLQRKYGDSIEQILEYYSRIEQETDMLENKDERLEQLIAKRDELLSDLLQIAEELTEAREICAEELAEQVEQELKDLQMERTSLKVRIDPIEDP-RGYEYKGRRVRPTKQGIDNAEFLISPNPGEPLRPLGKIASGGELSRIMLAMKSIFARHDQ-IPVLIFDEVDTGVSGRAAQSIAEKLYRLSSVCQVFSITHLPQVACMADHQYLIEKNVHDERTMTQIEALNEDGRVKELARMLGGVEITEKTLHHAQEMLNLAEGKKA------- 'Paenibacillus sp. Aloe-11' MLVTLSIRNLAVVEAVDVHFFKGFHVLSGETGAGKSIIIDALGLIAGGRGSADLVRYGCDKAEMEALFELP-ANHPVWSTLEQQGIKANAEEHLLIRRELTVQGKSSSRINGQMVNLTMLREVGEQLVNIHGQHEHQSLLRADRHLALLDTFGDTVIGPVKALYRERYNAFVKAEKEVRELQSSSQKAYQLLDMYRFQLEEIAAAELKLGEDELLAEERVKLSHSEKMMDGISGAYELLNGK-GG---LDVINDVLSRLNDVQNYDSKSLQPIAEQIQSAFYQLEDAAFQLRSYREDIEFNPGKLYEVEQRLNQITGLQRKYGDSIEQILEYYSRIEQETDLLENKDERLEQLIANRDQLLADLLEIAEELTEAREICAEELAEQVEQELKDLQMERTSLKVRMDAIEDP-RGYEYKGLRVRPTKQGIDNAEFLISPNPGEPLRPLGKIASGGELSRIMLAMKSIFARHDQ-IPVLIFDEVDTGVSGRAAQSIAEKLYRLSSVCQVFSITHLPQVACMADHQYLIEKNVYDGRTMTQIEGLTEEGRVKELARMLGGVEITEKTLHHAQEMLNLAEGKKA------- Paenibacillus_lactis_154 MLNTLSIRNLAVVESVDVQFYPGFHVLTGETGAGKSIIIDALGLIAGGRGSADLIRYGCDKAEIEALFDLP-PAHPVWQTLTHLGIEADTEEHLLIRRELTSQGKSTSRINGQLVNLSMLREVGEKLINIHGQHEHQSLLRSEQHMSLLDTYGEKIIGPAKRKYQELYSEFSKVEQELKELQETSQKAYQMLDMYRFQLEEIAAAQLKPGEDEELSEERVKLSHSEKMMDSVAGAYELLYGS-SG---LEAVSRALSRLEDVSAYDEKGLKPLVEQLQSAYYQLEDAVFQLRDYRDGIEFNPERLNEIELRLDMISGLRRKYGDNVEQILEYYGRIQQETDMLENKDEFIQGLEKRRDELLAVALEAAKKLSDARKRCARDLATQVERELKDLQMERTRFEVRLELQDAP-DGYEYEGQRIRLTKQGIDAAEFLISANPGEPLRPLAKIASGGEMSRIMLAMKSIFARHDQ-IPVLIFDEVDTGVSGRAAQSIAEKLFLLAKTCQVFSITHLPQVACMADHQYLIEKKVVSSRTMTQVQNLSEEGRIKELARMLGGVEITEKTLHHAQEMLNLAAAQKASRTASGQ Paenibacillus_vortex_V453 MLNTLSIRNLAVVESVDVQFYPGFHVLTGETGAGKSIIIDALGLIAGGRGSAELIRYGCDKAEIEALFELP-IDHPVWNTLKELGVEADREEHLLIRRELTAQGKSTSRINGQLLNLSMLREVGEKLINIHGQHEHQSLLRSEQHMSLLDTYGDKVIGPAKRKYQGLYSEFSKVERELRDLQETSQKAYQMLDMYRFQLEEIAAAELKTGEDEELSDERTKLSHSEKMMDSVAGAYDLLYGA-SG---LESVSRALSKLEDVSAYDEKGLKPLVEQLQSAYYQLEDAVFQLRDYRDGIEFNPERLNDIELRLDMISGLRRKYGDNVEQILEYYVRIQQETDMLENKDEFIQALEQRRDELLSVLLVSAKELSIARKQCAQDLARQVEGELKDLQMERTSLEVRLELQVDP-NGYEYEGHRVRLTKQGMDTAEFLISANPGEPLRPLAKIASGGEMSRIMLAMKSIFARHDQ-IPVLIFDEVDTGVSGRAAQSIAEKLFLLAKTCQVFSITHLPQVACMADHQYLIEKKLEASRTMTQVENLTEEGRVKELARMLGGVEITEKTLHHAQEMLNLAAAQKASRKALGQ Paenibacillus_sp._Y412MC10 MLNTLSIRNLAVVESVDVHFYPGFHVLTGETGAGKSIIIDALGLIAGGRGSAELIRYGCDKAEIEALFELP-AEHPVWSTLKKLGVEADPEEHLLIRRELTSQGKSTSRINGQLLNLSMLREVGEKLINIHGQHEHQSLLRSEQHMSLLDTYGDKTIGPAKRKYQELYGEFSKVEKELKDLQETSQKAYQMLDMYRFQLEEIAAAGLKTGEDEALSEERTKLSHSEKMMDSVAGAYDLLYGS-SG---LESVSRALSRLEDVSGYDEKGLKPLVEQLQSAYYQLEDAVFQLRDYRDGIEFNPERLNEIELRLDMISGLRRKYGDNVEQILEYYVRIQQETDMLENKDEFIQALEQRRDELLSVLLVSAKELSHARKQCAQDLARQVEGELKDLQMERTSLEVRLELQLDP-NGYEYEGQKVRLTRQGMDTAEFLISANPGEPLRPLAKIASGGEMSRIMLAMKSIFARHDQ-IPVLIFDEVDTGVSGRAAQSIAEKLFLLAKTCQVFSITHLPQVACMADHQYLIEKKLEASRTMTQVENLNEEGRVKELARMLGGVEITEKTLHHAQEMLNLAAAQKASRKALGQ Paenibacillus_mucilaginosus_3016 MLLELSIRHLAVIEHVELHCKRGFHVLTGETGAGKSIIIDALSLIAGGRSSTDLVRYGSDKAAIEALFQIA-SDHPVWGVVERIGIEPGEDEHLIIRREITAAGKSTSRVNGHLVNLATLKEIGEWLVNIHGQHEHQSLFKIEEHIRWLDLFGESRILPVKREYQQAFDAYQAVRRQVRELQETSKQALQMLDLYRFQVEEIRSAKLKAGEDEALGDEKRKLANAERLYQNASDAYDLLYGG-KG---LDAVSKAVQKLQDIAQLDTAKLGPLVEQVQSAFYQLEDAAYQVRDYREEIEFDPVRLDFIEQRLDTISSLRRKYGENVAEILAHADKIERELDLIENKDEKLQQLQKEEAKARETVDRLADKLTVERMAVAEELAGEIVSELRGLHMERTQFKVNFAPH---------EGERRKLTREGGDLVEFLISANPGEPLRSLSKIASGGEISRVMLALKSIFARVDR-IPVLVFDEVDTGVSGRAAQAIAEKMSKLADACQVFSITHLPQVACMADVHYLIHKRVDGNRTYTNIDDLNETGRIHELARMLGGVEVTDKTLQHAQEMLGLANDKKARMV---- Paenibacillus_mucilaginosus_KNP414 MLLELSIRHLAVIEHVELHCKRGFHVLTGETGAGKSIIIDALSLIAGGRSSTDLVRYGSDKAAIEALFQIA-SDHPVWGVVERIGIEPGEDEHLIIRREITAAGKSTSRVNGHLVNLATLKEIGEWLVNIHGQHEHQSLFKIEEHIRWLDLFGESRILPVKREYQQAFDAYQAVRRQVRELQETSKQALQMLDLYRFQVEEIRSAKLKAGEDEALGDEKRKLANAERLYQNASDAYDLLYGG-KG---LDAVSKAVQKLQDIAQLDTAKLGPLVEQVQSAFYQLEDAAYQVRDYREEIEFDPVRLDFIEQRLDTISSLRRKYGENVAEILAHADKIERELDLIENKDEKLQQLQKEEAKARETVDRLADKLTVERMAVAEELAGEIVSELRGLHMERTQFKVNFAPH---------EGERRKLTREGGDLVEFLISANPGEPLRSLSKIASGGEISRVMLALKSIFARVDR-IPVLVFDEVDTGVSGRAAQAIAEKMSKLADACQVFSITHLPQVACMADVHYLIHKRVDGNRTYTNIDDLNETGRIHELARMLGGVEVTDKTLQHAQEMLGLANDKKARMV---- 'Paenibacillus sp. JDR-2' MLRELSIRNLAVIEEVNVSFHHGFHVLTGETGAGKSILIDALSLIVGGRGSADMVRYGCDKAEMEAMFDLP-SQHPVWAVMERLGVQAPREEMLVIRRELTAHGKSSSRVNGQLVTMTMLREIGECLVNIHGQHEHQSLLRTEQHLEWLDLFAGDLLIERKTAYKAVYQQLQQARSSVRELEETTRHNVQMLDLYRYQIEEITNANLKDGEDEHLLEERRKLQYAGKRMDSVSEAYALLYNG-KG---LDAISKAISKLTDIQSYDPAVLTPMLEQLQSAYYQAEDAVFQLRDYRDSIDSDPGQLSVIEDRLDLINGLKRKYGETIPDILQYLDRITEERDKIENRDEYLDKLRKDELRLYLQAHELAQELSELRSHASERLAAAIELELKQLQMGNTIFRVQLDHPTAS-E----TSEMAALNANGIDEAIFMLSTNPGEPLKPLNKIASGGEMSRIMLALKAIFAEIDQ-VPVLVFDEVDTGVSGRAAQAIAEKMSQLSSKCQIFSITHLPQVACMADHHYEIKKHIIEQRTSTNVTKLVEHSRIEELARMLGGVEVTEKTRHHAQEMLVLADRQKGA------ Paenibacillus_curdlanolyticus_YK9 MLRELSIRNLAVIEEVTVSFHNGFHVLTGETGAGKSILIDALSLVVGGRGHAELVRHGCDRSEIEAVFDMA-ATHPVWDVLNRNGLSASPEELLVIRRELNAQGKSVSRINGQTVNLSILREAGECLVNIHGQHEHQSLFRTEKHLEWLDAYAGEPLGDRKRTYSSLYRQYESARSALRELEETSRKQMQMLDLYRFQLEEISSAQLQVGEDESLAEEKRKLTYAERLRDNAAEAYELLYGQ-QG---LDAIGKAVSKLEDICSFDKSAIGPLLEQLQSAFYQAEDAGYSLRDYRDSIEADPERLAWIDDRLNMIHHLKRKYGETTADILTYYNKIKTECEWLENRDERLQQLREEEQRLYSNAVTLAHELSSLRAHAAGRLSTAIESELQQLQMGGTMFRVALEQTYKD-D----QA-EVKLGPHGMDEAVFLLAPNPGEPLKPLAKIASGGEMSRVMLALKSIFAAIDQ-IPVLIFDEVDTGVSGRAAQSIAEKLSLLSNGCQVFSITHLPQVACMADHHYEIRKSVIENRTRTSVTELTLIGRIEELARMLGGVEVTEKTRHHAQEMLDLAHQRKGA------ Desmospora_sp._8437 MLREISIRDFAIIEQVHVTFDNGFHVLTGETGAGKSILFDALSLVTGGRGSTDFIGHHAKKAMVEALFELG-ESHPVRPVLSELGLEP-EDPHLLIRREISSSGKSTCRINGQMVTLAMLKQVGTHLVEIHGQHEHQKLLQVEEHLRWLDAFGGAPLKKRLQAYQEIYREYRDVVNQLERIDADEKEVSRRIDMLTFQRDEIAAARLEAGEDEVLEQEHNRLAHAERLMQNAADSYEALYGENRG---AESINRAVRDLEEIVPYDES-LSGVLELIQSAYYQVEEAARQLGRYRDELEFDPARLAQVEERLRLVDDLKRKYGETVHEILAYGQRVEAELEKLEHRDERKAELEAKRDQLITRLTEQAEELSTLRRTAATELEGLVELQLSDLNMKGTRFSVAFHQTDAS-----------DFTPHGIDQVEFLISPNPGEPLRPLVKIASGGELSRIMLAMQSIFSKVEGAADTLIFDEVDTGVSGRAAQAIAEKIARLARNCQVLCVTHLPQVACMADVHFQIFKETLGESTRTRVKLLTEEGRTMELARMLGGVEVTDTTKNHALEMLRLAEQTKKAI----- Alkaliphilus_metalliredigens_QYMF MLLELEVSNFALIDQLHIQFENGLNILTGETGAGKSIIIDAVNMVIGARADRELVRTGANKCTIQGIFSLE-NKVELVRMLSNYGVDIDEEENLIITREIYASGRSICRLNGVIVPLNILNKATRRLIDIHGQHEHQSLLETHNHIDMLDAYGGEKTADYLSKINERYQRLIQVQNKLKSICYDEMERERQIDLLRFQIEEIDMAALIPGEEEDLSKQKEIVANSEKIFSTLSNVYNNLYGGTSDSAIVDTLATIIIGIEQIASYDPA-LREFHESLQELQYKIEDITMGVRNYRDTIDFDPLLLEDIEQRLDTINHLKRKYGVSIKEILNYRHNIQAELEQYENNEFEIIGLKDEIVLMKNELKELALAMSQLRIKTADIFEKQITAILETLNMGKVSFEVSIIQRQDHLG-------EMLFTSKGINDVEFLISTNLGEPLKSLSKIASGGEMSRIMLAFKTILADVDH-MPTLIFDEIDTGISGRTAQIVGEKLYDISKKHQVLCITHLPQIASMANYHYLIEKKEKNDTTQTTISKLDKEHRVQELGRLLGG-ELTEITLKHAEEMINQAYLKRNA------ ; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 586; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 586; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 586; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1409911569392; linkFile Fig4.nex; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4677371222176691863; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2995471711753428847; mqVersion 275; checksumv 0 3 3594758576 null getNumChars 586 numChars 586 getNumTaxa 34 numTaxa 34 short false bits 1048575 states 1048575 sumSquaresStatesOnly 1.7629721310538E14 sumSquares 1.7629721310538E14 longCompressibleToShort false usingShortMatrix false NumFiles 2 NumMatrices 1 errorReportedDuringRun; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 368 34; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #2995471711753428847 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 235; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -67; setLocation 368 34; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;