#NEXUS
[written Wed Oct 01 13:41:49 EDT 2014 by Mesquite  version 3.01 (build 658) at naama-mendas-macbook-4.local/192.168.1.146]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=7;
	TAXLABELS
		Solanum_lycopersicum_Heinz1706 Solanum_lycopersicum_GH13 'Solanum_lycopersicum_Yellow_Pear' Solanum_lycopersicum_BTI87 Solanum_galapagense_LA0436 Solanum_pimpinellifolium_LA1589 Solanum_chilense_LA2779 
	;

END;


BEGIN TREES;
	Title Imported_trees;
	LINK Taxa = Taxa;
	TRANSLATE
[0] 		1 Solanum_lycopersicum_Heinz1706,
[1] 		2 Solanum_lycopersicum_GH13,
[2] 		3 'Solanum_lycopersicum_Yellow_Pear',
[3] 		4 Solanum_lycopersicum_BTI87,
[4] 		5 Solanum_galapagense_LA0436,
[5] 		6 Solanum_pimpinellifolium_LA1589,
[6] 		7 Solanum_chilense_LA2779;
	TREE Imported_tree_1 = (((((1,2)0.24,(3,4)0.24)0.11,(5,6)0.41),7));

END;





BEGIN CHARACTERS;
	TITLE  Character_Matrix;
	LINK TAXA = Taxa;
	DIMENSIONS  NCHAR=311;
	FORMAT DATATYPE = DNA GAP = - MISSING = ?;
	MATRIX
	Solanum_lycopersicum_Heinz1706    AAATACCTCATCTACCTTTGATAGTACGCTCCGAGAACATTTATTAATATTGCTTTCAGCCATTATCTAGACTCAAACCACAAATTATTTTACCAGGCTCCAGTGTAAAACAATCTTTAATCTTTGCTCGAATTGTTATTTTATTTTCCTTTTGCTGACTTTTCTTGTTTTGTGTTACAATGTTTATTTGCTTAAAAAAAATCGTAGGGAGGAGAGCTCAACTCTACTGCTCAGGTGAATAATAATGTAAACTCAGCACAACAAGAGGTACAAATACCTTTCCTGCCTTTAACTATGCCAGAACATCTAAA
	'Solanum_lycopersicum_Yellow_Pear' AAATACCTCATCTACCTTTGATAGTACGCTCCGAGAACATTTATTAATATTGCTTTCAGCCATTATCTAGACTCAAACCACAAATTATTTTACCAGGCTCCAGTGTAAAACAATCTTTAATCTTTGCTCGAATTGTTATTTTATTTTCCTTTTGCTGACTTTTCTTGTTTTGTGTTACAATGTTTATTTGCTTAAAAAAAATCGTAGGGAGGAGAGCTCAACTCTACTGCTCAGGTGAATAATAATGTAAACTCAGCACAACAAGAGGTACAAATACCTTTCCTGCCTTTAACTATGCCAGAACATCTAAA
	Solanum_lycopersicum_GH13         AAATACCTCATCTACCTTTGATAGTACGCTCCGAGAACATTTATTAATATTGCTTTCAGCCATTATCTAGACTCAAACCACAAATTATTTTACCAGGCTCCAGTGTAAAACAATCTTTAATCTTTGCTCGAATTGTTATTTTATTTTCCTTTTGCTGACTTTTCTTGTTTTGTGTTACAATGTTTATTTGCTTAAAAAAAATCGTAGGGAGGAGAGCTCAACTCTACTGCTCAGGTGAATAATAATGTAAACTCAGCACAACAAGAGGTACAAATACCTTTCCTGCCTTTAACTATGCCAGAACATCTAAA
	Solanum_lycopersicum_BTI87        AAATACCTCATCTACCTTTGATAGTACGCTCCGAGAACATTTATTAATATTGCTTTCAGCCATTATCTAGACTCAAACCACAAATTATTTTACCAGGCTCCAGTGTAAAACAATCTTTAATCTTTGCTCGAATTGTTATTTTATTTTCCTTTTGCTGACTTTTCTTGTTTTGTGTTACAATGTTTATTTGCTTAAAAAAAATCGTAGGGAGGAGAGCTCAACTCTACTGCTCAGGTGAATAATAATGTAAACTCAGCACAACAAGAGGTACAAATACCTTTCCTGCCTTTAACTATGCCAGAACATCTAAA
	Solanum_galapagense_LA0436        AAATACCTCATCTACCTTTGATAGTACGCTCCGAGAACATTTATTAGTATTGCTTTCAGCCATTATCTAGACTCAAACCACAAATTATTTTACCAAGCTCCAGTGTAAAACAATCTTTAATCTTTGCTCGAATTGTTATTTTATTTTCCTTTTGCTGACTTTTCTTGTTTTGTGTTACAATGTTTATTTGCTTAAAAAAAATCGTAGGGAGGAGAGCTCAACTCTACTGCTCAGGTGAATAATAATGTAAACTCAGCACAACAAGAGGTACAAATACCTTTCCTGCCTTTAACTATGCCAGAACATCTAAA
	Solanum_pimpinellifolium_LA1589   AAATACCTCATCTACCTTTGATAGTACGCTCCGAGAACATTTATTAATATTGCTTTCAGCCATTATCTAGACTCAAACCACAAATTATTTTACCAAGCTCCAGTGTAAAACAATCTTTAATCTTTGCTCGAATTGTTATTTTATTTTCCTTTTGCTGACTTTTCTTGTTTTGTGTTACAATGTTTATTTGCTTAAAAAAAATCGTAGGGAGGAGAGCTCAACTCTACTGCTCAGGTGAATAATAATGTAAACTCAGCACAACAAGAGGTACAAATACCTTTCCTGCCTTTAACTATGCCAGAACATCTAAA
	Solanum_chilense_LA2779           AAATACCTCATCTACCTTTGATAGTACGCTCCGAGAACATTTATTAATATTGCTTTCAGCCATTATCTAGACTCAAACCACAAATTATTTTAACAAGCTCCAATGTAAAACAATCTTTAATCTTTGCTAGAATTGTTATTTTATTTTCCTTTTGCTGACTTTTCTTGTTTTATGTTACAATGTTTATTTGCTTAAAAAAAATCGTAGGGAGGAGAGCTCAACTCTACTGCTCAGGTGAACAATAATGTAAACTCAGCACAACAAGAGGTACAAATACCTTTCCTGCCTTTAACTATGCCAAAACATCTAAA

;



END;

BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1 -  311;

END;

BEGIN NOTES;

	TAXABITS   TAXA = Taxa NAME = newlyAddedTaxon on =  1 -  7;

END;

BEGIN CODONS;
	CODESET * UNTITLED   =  universal:  1 -  311;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Jukes-Cantor':  1 -  311;
END;

Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		timeSaved 1412185309573;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			setID 0 779694954180787868;
		endTell;
		getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
		tell It;
			setID 0 7534222707663889439;
			mqVersion 301;
			checksumv 0 3 1085677865 null  getNumChars 311 numChars 311 getNumTaxa 7 numTaxa 7   short true   bits 15   states 15   sumSquaresStatesOnly 55838.0 sumSquares 55838.0 longCompressibleToShort false usingShortMatrix true   NumFiles 1 NumMatrices 1 errorReportedDuringRun;
			mqVersion;
		endTell;
		getWindow;
		tell It;
			suppress;
			setResourcesState false false 191;
			setPopoutState 400;
			setExplanationSize 0;
			setAnnotationSize 0;
			setFontIncAnnot 0;
			setFontIncExp 0;
			setSize 700 472;
			setLocation 8 22;
			setFont SanSerif;
			setFontSize 10;
			getToolPalette;
			tell It;
			endTell;
			desuppress;
		endTell;
		getEmployee  #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			showTaxa #779694954180787868 #mesquite.lists.TaxonList.TaxonList;
			tell It;
				setTaxa #779694954180787868;
				getWindow;
				tell It;
					newAssistant  #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition;
					getTable;
					tell It;
						rowNamesWidth 193;
					endTell;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					setSize 509 400;
					setLocation 8 22;
					setFont SanSerif;
					setFontSize 10;
					getToolPalette;
					tell It;
						setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam;
					endTell;
					setActive;
				endTell;
				showWindow;
				getEmployee #mesquite.lists.ColorTaxon.ColorTaxon;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel;
				tell It;
					togglePanel off;
				endTell;
			endTell;
			showTaxa #779694954180787868 #mesquite.lists.TaxonList.TaxonList;
			tell It;
				setTaxa #779694954180787868;
				getWindow;
				tell It;
					newAssistant  #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition;
					getTable;
					tell It;
						rowNamesWidth 224;
					endTell;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					setSize 509 400;
					setLocation 8 22;
					setFont SanSerif;
					setFontSize 10;
					getToolPalette;
					tell It;
						setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam;
					endTell;
				endTell;
				showWindow;
				getEmployee #mesquite.lists.ColorTaxon.ColorTaxon;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel;
				tell It;
					togglePanel off;
				endTell;
			endTell;
		endTell;
		endTell;
end;