#NEXUS [written Sun Oct 05 20:35:55 ART 2014 by Mesquite version 2.74 (build 550) at Andres-PC/192.168.100.101] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=30; TAXLABELS Ceratocystis_bhutanensis_AY528965 Ceratocystis_bhutanensis_AY528961 Ceratocystis_bhutanensis_AY528964 Ceratocystis_bhutanensis_AY528962 Ceratocystis_microbasis_EU588671 Ceratocystis_microbasis_EU588672 Ceratocystis_moniliformopsis_AY528987 Ceratocystis_moniliformopsis_AY528988 Ceratocystis_omanenisis_DQ074729 Ceratocystis_omanenisis_DQ074733 Ceratocystis_sublaevis_FJ151463 Ceratocystis_sublaevis_FJ151464 Ceratocystis_sublaevis_FJ151465 Ceratocystis_sumatrana_EU588668 Ceratocystis_sumatrana_EU588669 Ceratocystis_tribiliformis_AY528991 Ceratocystis_tribiliformis_AY528992 Ceratocystis_tribiliformis_AY528994 Ceratocystis_moniliformis_FJ151456 Ceratocystis_moniliformis_AY528985 Ceratocystis_moniliformis_AY528986 Ceratocystis_fagacearum_FJ411371 Ceratocystis_fagacearum_FJ411370 BAFC4488 BAFC4489 BAFC4491 BAFC4490 BAFC4492 BAFC4493 BAFC4494 ; END; BEGIN CHARACTERS; TITLE 'Matrix in file "BT_Ceratocystis_decorticans_matrix.nexus"'; DIMENSIONS NCHAR=525; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Ceratocystis_bhutanensis_AY528965 TTCGCTCCTCTGACCAGCCGTGGCGCCCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCCAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACCTGACCTGCTCTGCCATTTTGTAAGTTCCTT---------CTCCCTGCATC---------------------------ATAC------------------------TTGGAGTATCATTCACTAACAT-----------TCATTTTCTCTATAGCCGTGGTAAGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCCCTGTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCGACCTTCGTTGGTAACTCTACTGCCATCCAGGAGCTGTTCAAGCGCATTGGTGAGCAGTTCACTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTA Ceratocystis_bhutanensis_AY528961 TTCGCTCCTCTGACCAGCCGTGGCGCCCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCCAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACCTGACCTGCTCTGCCATTTTGTAAGTTCCTT---------CTCCCTGCATC---------------------------ATAC------------------------TTGGAGTATCATTCACTAACAT-----------TCATTTTCTCTATAGCCGTGGTAAGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCCCTGTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCGACCTTCGTTGGTAACTCTACTGCTATCCAGGAGCTGTTCAAGCGCATTGGTGAGCAGTTCACTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTA Ceratocystis_bhutanensis_AY528964 TTCGCTCCTCTGACCAGCCGTGGCGCCCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCCAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACCTGACCTGCTCTGCCATTTTGTAAGTTCCTT---------CTCCCTGCATC---------------------------ATAC------------------------TTGGAGTATCATTCACTAACAT-----------TCATTTTCTCTATAGCCGTGGTAAGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATTCCCAACAACGTCCAGACCGCCCTGTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCGACCTTCGTTGGTAACTCTACTGCCATCCAGGAGCTGTTCAAGCGCATTGGTGAGCAGTTCACTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTA Ceratocystis_bhutanensis_AY528962 TTCGCTCCTCTGACCAGCCGTGGCGCCCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCCAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACCTGACCTGCTCTGCCATTTTGTAAGTTCCTT---------CTCCCTGCATC---------------------------ATAC------------------------TTAGAGTATCATTCACTAACAT-----------TCATTTTCTCTATAGCCGTGGTAAGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCCCTGTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCGACATTCGTTGGTAACTCTACTGCCATCCAGGAGCTGTTCAAGCGCATTGGTGAGCAGTTCACTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTA Ceratocystis_microbasis_EU588671 TTCGCTCCTCTGACCAGCCGTGGCGCCCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCTAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACCTGACCTGCTCTGCCATTTTGTAAGTTCCTT---------CTCCCTGTGTC---------------------------ATAT------------------------TTGGAGTATTATTCACTAACAT-----------TCATTTTCTCTATAGCCGTGGTAAGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCCCTGTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCGACCTTCGTTGGTAACTCTACTGCCATCCAGGAGCTGTTCAAGCGCATTGGTGAGCAGTTCACTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTA Ceratocystis_microbasis_EU588672 TTCGCTCCTCTGACCAGCCGTGGCGCCCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCTAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACCTGACCTGCTCTGCCATTTTGTAAGTTCCTT---------CTCCCTGTGTC---------------------------ATAT------------------------TTGGAGTATTATTCACTAACAT-----------TCATTTTCTCTATAGCCGTGGTAAGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCCCTGTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCGACCTTCGTTGGTAACTCTACTGCCATCCAGGAGCTGTTCAAGCGCATTGGTGAGCAGTTCACTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTA Ceratocystis_moniliformopsis_AY528987 TTTGCTCCTCTGACCAGCCGTGGCGCCCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCCAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACCTGACCTGTTCTGCCATCTTGTAAGTTATTTTTGGAGGAACTTTTCGTTTC---------------------------ATAT------------------------TTGGAGCA-CATTGACTAACAT-----------ATATTTTCTCTATAGCCGTGGTAAGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCTCTCTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCCACCTTCGTCGGTAACTCTACTGCTATCCAGGAGCTCTTCAAGCGCATTGGTGAGCAGTTCACTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTA Ceratocystis_moniliformopsis_AY528988 TTTGCTCCTCTGACCAGCCGTGGCGCCCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCCAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACCTGACCTGTTCTGCCATCTTGTAAGTTATTTTTGGAGGAACTTTTCGTTTC---------------------------ATAT------------------------TTGGAGCA-CATTGACTAACAT-----------ATATTTTCTCTATAGCCGTGGTAAGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCTCTCTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCCACCTTCGTCGGTAACTCTACTGCTATCCAGGAGCTCTTCAAGCGCATTGGTGAGCAGTTCACTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTA Ceratocystis_omanenisis_DQ074729 TTCGCTCCTCTGACCAACCGTGGCGCCCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTTACCCAGCAGATGTTCGACCCCAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACCTGACCTGCTCTGCCATTTTGTAAGTTCCTT---------TTCCCTGCATC---------------------------ATAT------------------------TTGGAGTATCATTCACTAACAT-----------TCATTTTCTCTATAGCCGTGGTAAGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCCCTGTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCGACCTTCGTTGGTAACTCTACTGCCATCCAGGAGCTGTTCAAGCGCATTGGTGAGCAGTTCACTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTA Ceratocystis_omanenisis_DQ074733 TTCGCTCCTCTGACCAGCCGTGGCGCCCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTTACCCAGCAGATGTTCGACCCCAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACCTGACCTGCTCTGCCATTTTGTAAGTTCCTT---------TTCCCTGCATC---------------------------ATAT------------------------TTGGAGTATCATTCACTAACAT-----------TCATTTTCTCTATAGCCGTGGTAAGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCCCTGTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCGACCTTCGTTGGTAACTCTACTGCCATCCAGGAGCTGTTCAAGCGCATTGGTGAGCAGTTCACTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTA Ceratocystis_sublaevis_FJ151463 TTCGCTCCTCTGACCAGCCGTGGCGCTCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCTAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACCTGACCTGCTCTGCCATCTTGTAAGTTATCT---------TTTCTT-TGAA---------------------------GTAT------------------------TTGGAGCATGATTCACTAACAT-----------ATTTTCTCTCTATAGCCGTGGTAAGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATTCCCAACAACGTCCAGACCGCTCTTTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCGACCTTCGTCGGTAACTCTACTGCCATCCAGGAGCTCTTCAAGCGTATTGGCGAGCAGTTCACTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTA Ceratocystis_sublaevis_FJ151464 TTCGCTCCTCTGACCAGCCGTGGCGCTCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCTAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACCTGACCTGCTCTGCCATCTTGTAAGTTATCT---------TTTCTT-TGAA---------------------------GTAT------------------------TTGGAGCATGATTCACTAACAT-----------ATTTTCTCTCTATAGCCGTGGTAAGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATTCCCAACAACGTCCAGACCGCTCTTTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCGACCTTCGTCGGTAACTCTACTGCCATCCAGGAGCTCTTCAAGCGTATTGGCGAGCAGTTCACTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTA Ceratocystis_sublaevis_FJ151465 TTCGCTCCTCTGACCAGCCGTGGCGCTCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCTAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACCTGACCTGCTCTGCCATCTTGTAAGTTATCT---------TTTCTT-TGAA---------------------------GTAT------------------------TTGGAGCATGATTCACTAACAT-----------ATTTTCTCTCTATAGCCGTGGTAAGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATTCCCAACAACGTCCAGACCGCTCTTTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCGACCTTCGTCGGTAACTCTACTGCCATCCAGGAGCTCTTCAAGCGTATTGGCGAGCAGTTCACTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTA Ceratocystis_sumatrana_EU588668 TTCGCTCCTCTGACCAGCCGTGGTGCCCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCCAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACCTGACCTGCTCTGCCATTTTGTAAGTTCCTT---------CTCCCTGCGTC---------------------------ATAT------------------------CTGGAGTATCATTCACTAACAT-----------TCATTTTCTCTATAGCCGTGGTAAGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCCCTGTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCGACCTTCGTTGGTAACTCTACTGCCATCCAGGAGCTGTTCAAGCGCATTGGTGAGCAGTTCACTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTA Ceratocystis_sumatrana_EU588669 TTCGCTCCTCTGACCAGCCGTGGTGCCCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCCAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACCTGACCTGCTCTGCCATTTTGTAAGTTCCTT---------CTCCCTGCGTC---------------------------ATAT------------------------CTGGAGTATCATTCACTAACAT-----------TCATTTTCTCTATAGCCGTGGTAAGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCCCTGTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCGACCTTCGTTGGTAACTCTACTGCCATCCAGGAGCTGTTCAAGCGCATTGGTGAGCAGTTCACTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTA Ceratocystis_tribiliformis_AY528991 TTCGCTCCTCTGACCAGCCGTGGCGCTCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCTAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACCTGACCTGCTCTGCCATCTTGTAAGTTATCT---------TTTGTT-TGTA---------------------------GGAT------------------------TTGGAGCATGATTCACTAACAT-----------CTTTTCTCTCTATAGCCGTGGTAAGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCTCTTTGCTCCATTCCTCCCCGTGGCCTCAAAATGTCTTCGACCTTCGTCGGTAACTCTACTGCCATCCAGGAGCTTTTCAAGCGCATTGGCGAGCAGTTCACTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTA Ceratocystis_tribiliformis_AY528992 TTCGCTCCTCTGACCAGCCGTGGCGCTCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCTAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACCTGACCTGCTCTGCCATCTTGTAAGTTATCT---------TTTGTT-TGTA---------------------------GGAT------------------------TTGGAGCATGATTCACTAACAT-----------CTTTTCTCTCTATAGCCGTGGTAAGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCTCTTTGCTCCATTCCTCCCCGTGGCCTCAAAATGTCTTCGACCTTCGTCGGTAACTCTACTGCCATCCAGGAGCTTTTCAAGCGCATTGGCGAGCAGTTCACTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTA Ceratocystis_tribiliformis_AY528994 TTCGCTCCTCTGACCAGCCGTGGCGCTCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCTAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACCTGACCTGCTCTGCCATCTTGTAAGTTATCT---------TTTGTT-TGTA---------------------------GGAT------------------------TTGGAGCATGATTCACTAACAT-----------CTTTTCTCTCTATAGCCGTGGTAAGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCTCTTTGCTCCATTCCTCCCCGTGGCCTCAAAATGTCTTCGACCTTCGTCGGTAACTCTACTGCCATCCAGGAGCTTTTCAAGCGCATTGGCGAGCAGTTCACTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTA Ceratocystis_moniliformis_FJ151456 TTCGCTCCTCTGACCAGCCGTGGCGCTCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCTAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACCTGACCTGCTCTGCCATCTTGTAAGTTATCT---------TTTCTT-TGTA---------------------------GTAT------------------------TTGGAGCATGATTCACTAACAT-----------ATTTTCTCTCTATAGCCGTGGTAAGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATTCCCAACAACGTCCAGACCGCTCTTTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCGACCTTCGTCGGTAACTCTACTGCCATCCAGGAGCTCTTCAAGCGTATTGGCGAGCAGTTCACTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTA Ceratocystis_moniliformis_AY528985 TTCGCTCCTCTGACCAGCCGTGGCGCTCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCTAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACCTGACCTGCTCTGCCATCTTGTAAGTTATCT---------TTTCTT-TGTA---------------------------GTAT------------------------TTGGAGCATGATTCACTAACAT-----------ATTTTCTCTCTATAGCCGTGGTAAGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATTCCCAACAACGTCCAGACCGCTCTTTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCGACCTTCGTCGGTAACTCTACTGCCATCCAGGAGCTCTTCAAGCGTATTGGCGAGCAGTTCACTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTA Ceratocystis_moniliformis_AY528986 TTCGCTCCTCTGACCAGCCGTGGCGCTCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCTAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACCTGACCTGCTCTGCCATCTTGTAAGTTATCT---------TTTCTT-TGTA---------------------------GTAT------------------------TTGGAGCATGATTCACTAACAT-----------ATTTTCTCTCTATAGCCGTGGTAAGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATTCCCAACAACGTCCAGACCGCTCTTTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCGACCTTCGTCGGTAACTCTACTGCCATCCAGGAGCTCTTCAAGCGTATTGGCGAGCAGTTCACTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTA Ceratocystis_fagacearum_FJ411371 TTCGCTCCCCTCACTAGCCGTGGCGCCCACTCTTTCCGTGCTGTCAGCGTTCCCGAGCTCACCCAGCAGATGTTTGACCCCAAGAACATGATGGCTGCTTCTGACTTCCGCAACGGTCGCTACCTGACTTGCTCTGCCATCTTGTGAGTTTACA---------TCTCCTTTTCT---------------------------CAATCTTTGTCTGTCCATTTGACATGTATCGATGTAATGCTAACTAACCA-----------TTATTCACCAAATAGCCGTGGTAAGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCGTCGTACTTTGTTGAGTGGATCCCCAACAACGTCCAGACTGCCCTGTGCTCTATTCCCCCTCGCGGCCTCAAGATGTCGTCGACCTTTGTCGGTAACTCGACTGCTATCCAGGAGCTCTTCAAGCGTATTGGCGAGCAGTTCACTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTG Ceratocystis_fagacearum_FJ411370 TTCGCTCCCCTCACTAGCCGTGGCGCTCACTCTTTCCGTGCTGTCAGCGTTCCCGAGCTCACCCAGCAGATGTTTGACCCCAAGAACATGATGGCTGCTTCTGACTTCCGCAACGGTCGCTACCTGACTTGCTCTGCCATCTTGTGAGTTTACA---------TCTCCTTTTCT---------------------------CAATCTTTGTCTGTCCATTTGACATGTATCGATGTAATGCTAACTAACCA-----------TTATTCACCAAATAGCCGTGGTAAGGTTGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCGTCGTACTTTGTTGAGTGGATCCCCAACAACGTCCAGACTGCCCTGTGCTCTATTCCCCCTCGCGGCCTCAAGATGTCGTCGACCTTTGTCGGTAACTCGACTGCTATCCAGGAGCTCTTCAAGCGTATTGGCGAGCAGTTCACTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTG BAFC4488 TTCGCTCCCCTGACCAGCCGTGGTGCTCACTCTTTCCGCGCTGTCAGCGTGCCTGAGCTCACTCAGCAAATGTTCGACCCCAAGAACATGATGGCCGCCTCCGATTTCCGCAACGGTCGCTACCTGACCTGCTCTGCCATTTTGTAAGTTTTTG---------GCCCCTATGTGCTGAACGATATATATATAGGACTCCATATATATATATAGGCGTGTAATGTACGCTCCGACGAACACGATGCTAACAATTATTACCT--TCTCTCTCAATATAGCCGTGGTAAGGTTGCCATGAAGGAGGTCGAGGACCAGATGCGTAACGTCCAGAACAAGAACTCGTCCTACTTCGTCGAGTGGATTCCCAACAACGTCCAGACCGCCCTGTGCTCTATTCCTCCCCGCGGCCTCAAGATGTCGTCGACCTTCGTCGGTAACTCCACCGCCATCCAGGAGCTCTTCAAGCGTATTGGTGAGCAGTTCACTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTG BAFC4489 TTCGCTCCCCTGACCAGCCGTGGTGCTCACTCTTTCCGCGCTGTCAGCGTGCCTGAGCTCACTCAGCAAATGTTCGACCCCAAGAACATGATGGCCGCCTCCGATTTCCGCAACGGTCGCTACCTGACCTGCTCTGCCATTTTGTAAGTTTTTG---------GCCCCTATGTGCTGAACGATATATATATAGGACTCCATATATATATATAGGCGTGTAATGTACGCTCCGACGAACACGATGCTAACAATTATTACCT--TCTCTCTCAATATAGCCGTGGTAAGGTTGCCATGAAGGAGGTCGAGGACCAGATGCGTAACGTCCAGAACAAGAACTCGTCCTACTTCGTCGAGTGGATTCCCAACAACGTCCAGACCGCCCTGTGCTCTATTCCTCCCCGCGGCCTCAAGATGTCGTCGACCTTCGTCGGTAACTCCACCGCCATCCAGGAGCTCTTCAAGCGTATTGGTGAGCAGTTCACTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTG BAFC4491 ?????????????????????GGTGCTCACTCTTTCCGCGCTGTCAGCGTGCCTGAGCTCACTCAGCAAATGTTCGACCCCAAGAACATGATGGCCGCCTCCGATTTCCGCAACGGTCGCTACCTGACCTGCTCTGCCATTTTGTAAGTTTTTG---------GCCCCTATGTGCTGAACGATATATATATAGGACTCCATATATATATATAGGCGTGTAATGTACGCTCCGACGAACACGATGCTAACAATTATTACCT--TCTCTCTCAATATAGCCGTGGTAAGGTTGCCATGAAGGAGGTCGAGGACCAGATGCGTAACGTCCAGAACAAGAACTCGTCCTACTTCGTCGAGTGGATTCCCAACAACGTCCAGACCGCCCTGTGCTCTATTCCTCCCCGCGGCCTCAAGATGTCGTCGACCTTCGTCGGTAACTCCACCGCCATCCAGGAGCTCTTCAAGCGTATTGGTGAGCAGTTCACTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTG BAFC4490 TTCGCTCCCCTGACCAGCCGTGGTGCTCACTCTTTCCGCGCTGTCAGCGTGCCTGAGCTCACCCAGCAAATGTTCGACCCCAAGAACATGATGGCCGCCTCCGATTTCCGCAACGGTCGCTACCTGACCTGCTCTGCCATTTTGTAAGTTTTTG---------GCCCCTATGTGCTGAACGATATATATATAGGACTCC--ATATATATATAGGCGTGTAATGCACGCTCCGACGAACACGATGCTAACAATTATTACCTTCTCTCTCTCAATATAGCCGTGGTAAGGTTGCCATGAAGGAGGTCGAGGACCAGATGCGTAACGTCCAGAACAAGAACTCGTCCTACTTCGTCGAGTGGATTCCCAACAACGTCCAGACCGCCCTGTGCTCTATTCCTCCCCGCGGCCTCAAGATGTCGTCGACCTTCGTCGGTAACTCCACCGCCATCCAGGAGCTCTTCAAGCGTATTGGTGAGCAGTTCACTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTG BAFC4492 TTCGCTCCCCTGACCAGCCGTGGTGCTCACTCTTTCCGCGCTGTCAGCGTGCCTGAGCTCACCCAGCAAATGTTCGACCCCAAGAACATGATGGCCGCCTCCGATTTCCGCAACGGTCGCTACCTGACCTGCTCTGCCATTTTGTAAGTTTTTG---------GCCCCTATGTGCTGAACGATATATATATAGGACTCC--ATATATATATAGGCGTGTAATGCACGCTCCGACGAACACGATGCTAACAATTATTACCTTCTCTCTCTCAATATAGCCGTGGTAAGGTTGCCATGAAGGAGGTCGAGGACCAGATGCGTAACGTCCAGAACAAGAACTCGTCCTACTTCGTCGAGTGGATTCCCAACAACGTCCAGACCGCCCTGTGCTCTATTCCTCCCCGCGGCCTCAAGATGTCGTCGACCTTCGTCGGTAACTCCACCGCCATCCAGGAGCTCTTCAAGCGTATTGGTGAGCAGTTCACTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTG BAFC4493 ?????????????????????GGTGCTCACTCTTTCCGCGCTGTCAGCGTGCCTGAGCTCACCCAGCAAATGTTCGACCCCAAGAACATGATGGCCGCCTCCGATTTCCGCAACGGTCGCTACCTGACCTGCTCTGCCATTTTGTAAGTTTTTG---------GCCCCTATGTGCTGAACGATATATATATAGGACTCC--ATATATATATAGGCGTGTAATGCACGCTCCGACGAACACGATGCTAACAATTATTACCTTCTCTCTCTCAATATAGCCGTGGTAAGGTTGCCATGAAGGAGGTCGAGGACCAGATGCGTAACGTCCAGAACAAGAACTCGTCCTACTTCGTCGAGTGGATTCCCAACAACGTCCAGACCGCCCTGTGCTCTATTCCTCCCCGCGGCCTCAAGATGTCGTCGACCTTCGTCGGTAACTCCACCGCCATCCAGGAGCTCTTCAAGCGTATTGGTGAGCAGTTCACTGCCATGTTCCGTCGCA?GGCTTTCTTGCATTGGTACACTG BAFC4494 TTCGCTCCCCTGACCAGCCGTGGTGCTCAGTCTTTCCGCGCTGTCAGCGTGCCTGAGCTCACCCAGCAAATGTTCGACCCCAAGAACATGATGGCCGCCTCCGATTTCCGCAACGGTCGCTACCTGACCTGCTCTGCCATTTTGTAAGTTTTTG---------GCCCCTATGTGCTGAACGATATATATATAGGACTCC--ATATATATATAGGCGTGTAATGCACGCTCCGACGAACACGATGCTAACAATTATTACCTTCTCTCTCTCAATATAGCCGTGGTAAGGTTGCCATGAAGGAGGTCGAGGACCAGATGCGTAACGTCCAGAACAAGAACTCGTCCTACTTCGTCGAGTGGATTCCCAACAACGTCCAGACCGCCCTGTGCTCTATTCCTCCCCGCGGCCTCAAGATGTCGTCGACCTTCGTCGGTAACTCCACCGCCATCCAGGAGCTCTTCAAGCGTATTGGTGAGCAGTTCACTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTG ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 525; END; BEGIN TREES; Title 'Trees from "bt_ceratocystis_decorticans_mltree.tre"'; LINK Taxa = Taxa; TRANSLATE 2 Ceratocystis_bhutanensis_AY528965, 4 Ceratocystis_bhutanensis_AY528961, 3 Ceratocystis_bhutanensis_AY528964, 1 Ceratocystis_bhutanensis_AY528962, 10 Ceratocystis_microbasis_EU588671, 9 Ceratocystis_microbasis_EU588672, 12 Ceratocystis_moniliformopsis_AY528987, 11 Ceratocystis_moniliformopsis_AY528988, 6 Ceratocystis_omanenisis_DQ074729, 5 Ceratocystis_omanenisis_DQ074733, 15 Ceratocystis_sublaevis_FJ151463, 13 Ceratocystis_sublaevis_FJ151464, 14 Ceratocystis_sublaevis_FJ151465, 8 Ceratocystis_sumatrana_EU588668, 7 Ceratocystis_sumatrana_EU588669, 19 Ceratocystis_tribiliformis_AY528991, 20 Ceratocystis_tribiliformis_AY528992, 21 Ceratocystis_tribiliformis_AY528994, 16 Ceratocystis_moniliformis_FJ151456, 17 Ceratocystis_moniliformis_AY528985, 18 Ceratocystis_moniliformis_AY528986, 29 Ceratocystis_fagacearum_FJ411371, 30 Ceratocystis_fagacearum_FJ411370, 24 BAFC4488, 22 BAFC4489, 23 BAFC4491, 25 BAFC4490, 26 BAFC4492, 27 BAFC4493, 28 BAFC4494; TREE 'PHYLIP 1+' = (((((((4:0.002194,(3:0.002194,(1:0.004462,2:0.0)0.5000:0.0)0.4100:0.0)0.7400:0.002203,(5:0.0,6:0.0)0.9300:0.004431)0.6700:0.002314,(7:0.0,8:0.0)0.9600:0.004448)0.8500:0.003578,(9:0.0,10:0.0)0.9800:0.003124)0.9600:0.006734,((11:0.0,12:0.0)1.0000:0.020342,(((15:0.0,(13:0.0,14:0.0)0.2400:0.0)0.7100:0.002217,(16:0.0,(17:0.0,18:0.0)0.2000:0.0)0.6600:0.0)1.0000:0.002549,(19:0.0,(20:0.0,21:0.0)0.3500:0.0)1.0000:0.014125)0.9900:0.029748)0.5600:0.026433)0.9800:0.071649,((24:0.0,(22:0.0,23:0.0)0.2900:0.0)0.7300:0.002356,(25:0.0,(26:0.0,(27:0.0,28:0.002369)0.1200:0.0)0.0700:0.0)0.1000:0.0)1.0000:0.109313)1.0000:0.001208,(29:0.0,30:0.004612)1.0000:0.13855)[% ] [%unrooted = on ]; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 525; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 525; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1412552155883; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 5814378611680310972; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6957914072632259625; mqVersion 274; checksumv 0 2 945870834 null getNumChars 525 numChars 525 getNumTaxa 30 numTaxa 30 short true bits 15 states 15 sumSquaresStatesOnly 317847.0 sumSquares 317847.0 NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1366 650; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #5814378611680310972 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #5814378611680310972; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1266 583; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #5814378611680310972 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 900.1412552120407.3813453295948144171; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1266 583; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #6957914072632259625 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 210; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1266 583; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;