#NEXUS [written Mon Oct 06 16:47:05 CEST 2014 by Mesquite version 3.01 (build 658) at Joane-PC/134.157.120.89] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=25; TAXLABELS Oistoceras_figulinum Amaltheus_bifurcus Amaltheus_stokesi Amaltheus_talrosei Amaltheus_subbifurvus Amaltheus_repressus Amaltheus_conspectus Amaltheus_viligaensis Amaltheus_wertheri Amauroceras_ferruginum Amaltheus_subnodosus Amaltheus_striatus Amaltheus_gloriosus Amaltheus_gloriosus_morph._W Amaltheus_gibbosus Amaltheus_salebrosus Pleuroceras_becheteri Pleuroceras_transiens Pleuroceras_solare Pleuroceras_quadratum Pleuroceras_apyrenum Pleuroceras_spinatum Pleuroceras_hawskerense Pleuroceras_paucicostatum Pleuroceras_yeovilense ; END; BEGIN CHARACTERS; TITLE 'Amaltheidae with ontogeny'; DIMENSIONS NCHAR=33; FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1 2 3 4 5 6 7 8 9 A B C D E F G H I J K L M N O P Q R S T U V"; CHARSTATELABELS 1 Type_of_shape_growth, 2 Slope_of_Uw, 3 Uw_sigma1, 4 'Uw K (saturation growth law)', 5 'Uw K (linear growth)', 6 WbWh_sigma1, 7 'WbWh k (saturation growth law)', 8 'WbWh k (linear growth)', 9 Size_adult_maximum, 10 'Ventro-lateral edge on adult body chamber', 11 'Ventro-lateral edge on phragmocone', 12 Rounded_venral_area, 13 Sulci, 14 Ribbing_density_sigma1, 15 Ribbing_density_k, 16 Perlatum_stage, 17 Perlatum_stage_extension, 18 Complex_Perlatum_stage_, 19 Type_of_tubercles_in_the_complex_Perlatum_stage, 20 Extension_of_the_complex_Perlatum_stage, 21 Engelhardti_stage, 22 Length_of_Engelhardti_stage, 23 Spiral_ornamentation, 24 Connection_between_chevrons_and_ribs, 25 angle_between_umbilical_and_ventral_segments_of_ribs., 26 Large_chevrons, 27 Chevrons_density, 28 Individualized_keel, 29 Keel_with_chevrons, 30 Cordated_keel_, 31 Accessory_saddle, 32 Complexity_of_the_suture_line_ornamentation, 33 constrictions ; MATRIX Oistoceras_figulinum 00??4??441100LH0????0?010??000100 Amaltheus_bifurcus 117A?85?20100GK0????0?014?0000100 Amaltheus_stokesi 116F?6D?H0100CE0????0?11101010100 Amaltheus_talrosei 01??2??1E0100940????0??1D12010100 Amaltheus_subbifurvus 01??0??0B0100HF0????0??1E13010100 Amaltheus_repressus 01??????C0100110????0??120?010101 Amaltheus_conspectus 01??1??2F0110000????0?11A1?010101 Amaltheus_viligaensis 01??3??370110FG0????0?11F1?010100 Amaltheus_wertheri 111D?02?00000MN0????0?1130?010100 Amauroceras_ferruginum 112C?7G?10000NM0????0?1????010100 Amaltheus_subnodosus 1153?38?30000IJ110??0?10606110100 Amaltheus_striatus 11???13?I000055100??131050?110100 Amaltheus_gloriosus 1101?44?J0000JI110101310B04110100 Amaltheus_gloriosus_morph._W 1135?26?K0000BC111211310C07110100 Amaltheus_gibbosus 1146?57?L0000D9111321310705110100 Amaltheus_salebrosus 118G?90?N00002611133121080?110100 Pleuroceras_becheteri 12AE????D1100AD111341210908110110 Pleuroceras_transiens 129B?CA?51100KL120??1110?0?110110 Pleuroceras_solare 12C4?AC?81100EB120??1110???111010 Pleuroceras_quadratum 12??????91100??120??1110???111010 Pleuroceras_apyrenum 12G0?BE?A1101421?0??1110???111010 Pleuroceras_spinatum 12B8?FB?O11028A130??0??0???111010 Pleuroceras_hawskerense 12F2?DF?M110167120?????0???111010 Pleuroceras_paucicostatum 12E9?G9?6110233130??0??0???111010 Pleuroceras_yeovilense 12D7?E1?G110278130??0??0???111010 ; END; BEGIN ASSUMPTIONS; USERTYPE matrix1 (Stepmatrix) = 17 0 1 2 3 4 5 6 7 8 9 A B C D E F G 0 115 158 192 214 247 259 439 565 586 626 778 794 808 871 911 1000 115 0 43 77 99 132 144 324 450 471 511 663 679 693 756 796 885 158 43 0 34 56 89 101 281 407 428 468 620 636 650 713 753 842 192 77 34 0 22 55 67 247 373 394 434 586 602 616 679 719 808 214 99 56 22 0 33 45 225 351 372 412 564 580 594 657 697 786 247 132 89 55 33 0 12 192 318 339 379 531 547 561 624 664 753 259 144 101 67 45 12 0 180 306 327 367 519 535 549 612 652 741 439 324 281 247 225 192 180 0 126 147 187 339 355 369 432 472 561 565 450 407 373 351 318 306 126 0 21 61 213 229 243 306 346 435 586 471 428 394 372 339 327 147 21 0 40 192 208 222 285 325 414 626 511 468 434 412 379 367 187 61 40 0 152 168 182 245 285 374 778 663 620 586 564 531 519 339 213 192 152 0 16 30 93 133 222 794 679 636 602 580 547 535 355 229 208 168 16 0 14 77 117 206 808 693 650 616 594 561 549 369 243 222 182 30 14 0 63 103 192 871 756 713 679 657 624 612 432 306 285 245 93 77 63 0 40 129 911 796 753 719 697 664 652 472 346 325 285 133 117 103 40 0 89 1000 885 842 808 786 753 741 561 435 414 374 222 206 192 129 89 0 ; USERTYPE matrix2 (Stepmatrix) = 17 0 1 2 3 4 5 6 7 8 9 A B C D E F G 0 2 14 19 20 20 32 38 39 44 62 68 72 87 115 151 1000 2 0 12 17 18 18 30 36 37 42 60 66 70 85 113 149 998 14 12 0 5 6 6 18 24 25 30 48 54 58 73 101 137 986 19 17 5 0 1 1 13 19 20 25 43 49 53 68 96 132 981 20 18 6 1 0 0 12 18 19 24 42 48 52 67 95 131 980 20 18 6 1 0 0 12 18 19 24 42 48 52 67 95 131 980 32 30 18 13 12 12 0 6 7 12 30 36 40 55 83 119 968 38 36 24 19 18 18 6 0 1 6 24 30 34 49 77 113 962 39 37 25 20 19 19 7 1 0 5 23 29 33 48 76 112 961 44 42 30 25 24 24 12 6 5 0 18 24 28 43 71 107 956 62 60 48 43 42 42 30 24 23 18 0 6 10 25 53 89 938 68 66 54 49 48 48 36 30 29 24 6 0 4 19 47 83 932 72 70 58 53 52 52 40 34 33 28 10 4 0 15 43 79 928 87 85 73 68 67 67 55 49 48 43 25 19 15 0 28 64 913 115 113 101 96 95 95 83 77 76 71 53 47 43 28 0 36 885 151 149 137 132 131 131 119 113 112 107 89 83 79 64 36 0 849 1000 998 986 981 980 980 968 962 961 956 938 932 928 913 885 849 0 ; USERTYPE matrix3 (Stepmatrix) = 5 0 1 2 3 4 0 429 546 614 1000 429 0 117 185 571 546 117 0 68 454 614 185 68 0 386 1000 571 454 386 0 ; USERTYPE matrix4 (Stepmatrix) = 5 0 1 2 3 4 0 679 711 745 1000 679 0 32 66 321 711 32 0 34 289 745 66 34 0 255 1000 321 289 255 0 ; USERTYPE matrix5 (Stepmatrix) = 25 0 1 2 3 4 5 6 7 8 9 A B C D E F G H I J K L M N O 0 0 301 301 380 380 380 505 505 505 505 556 556 556 602 643 643 681 699 699 699 699 748 820 1000 0 0 301 301 380 380 380 505 505 505 505 556 556 556 602 643 643 681 699 699 699 699 748 820 1000 301 301 0 0 79 79 79 204 204 204 204 255 255 255 301 342 342 380 398 398 398 398 447 519 699 301 301 0 0 79 79 79 204 204 204 204 255 255 255 301 342 342 380 398 398 398 398 447 519 699 380 380 79 79 0 0 0 125 125 125 125 176 176 176 222 263 263 301 319 319 319 319 368 440 620 380 380 79 79 0 0 0 125 125 125 125 176 176 176 222 263 263 301 319 319 319 319 368 440 620 380 380 79 79 0 0 0 125 125 125 125 176 176 176 222 263 263 301 319 319 319 319 368 440 620 505 505 204 204 125 125 125 0 0 0 0 51 51 51 97 138 138 176 194 194 194 194 243 315 495 505 505 204 204 125 125 125 0 0 0 0 51 51 51 97 138 138 176 194 194 194 194 243 315 495 505 505 204 204 125 125 125 0 0 0 0 51 51 51 97 138 138 176 194 194 194 194 243 315 495 505 505 204 204 125 125 125 0 0 0 0 51 51 51 97 138 138 176 194 194 194 194 243 315 495 556 556 255 255 176 176 176 51 51 51 51 0 0 0 46 87 87 125 143 143 143 143 192 264 444 556 556 255 255 176 176 176 51 51 51 51 0 0 0 46 87 87 125 143 143 143 143 192 264 444 556 556 255 255 176 176 176 51 51 51 51 0 0 0 46 87 87 125 143 143 143 143 192 264 444 602 602 301 301 222 222 222 97 97 97 97 46 46 46 0 41 41 79 97 97 97 97 146 218 398 643 643 342 342 263 263 263 138 138 138 138 87 87 87 41 0 0 38 56 56 56 56 105 177 357 643 643 342 342 263 263 263 138 138 138 138 87 87 87 41 0 0 38 56 56 56 56 105 177 357 681 681 380 380 301 301 301 176 176 176 176 125 125 125 79 38 38 0 18 18 18 18 67 139 319 699 699 398 398 319 319 319 194 194 194 194 143 143 143 97 56 56 18 0 0 0 0 49 121 301 699 699 398 398 319 319 319 194 194 194 194 143 143 143 97 56 56 18 0 0 0 0 49 121 301 699 699 398 398 319 319 319 194 194 194 194 143 143 143 97 56 56 18 0 0 0 0 49 121 301 699 699 398 398 319 319 319 194 194 194 194 143 143 143 97 56 56 18 0 0 0 0 49 121 301 748 748 447 447 368 368 368 243 243 243 243 192 192 192 146 105 105 67 49 49 49 49 0 72 252 820 820 519 519 440 440 440 315 315 315 315 264 264 264 218 177 177 139 121 121 121 121 72 0 180 1000 1000 699 699 620 620 620 495 495 495 495 444 444 444 398 357 357 319 301 301 301 301 252 180 0 ; USERTYPE matrix6 (Stepmatrix) = 9 0 1 2 3 4 5 6 7 8 0 75 94 151 355 564 611 624 1000 75 0 19 76 280 489 536 549 925 94 19 0 57 261 470 517 530 906 151 76 57 0 204 413 460 473 849 355 280 261 204 0 209 256 269 645 564 489 470 413 209 0 47 60 436 611 536 517 460 256 47 0 13 389 624 549 530 473 269 60 13 0 376 1000 925 906 849 645 436 389 376 0 ; USERTYPE matrix7 (Stepmatrix) = 16 0 1 2 3 4 5 6 7 8 9 A B C D E F 0 62 62 62 250 438 688 688 688 688 750 750 750 1000 1000 1000 62 0 0 0 188 376 626 626 626 626 688 688 688 938 938 938 62 0 0 0 188 376 626 626 626 626 688 688 688 938 938 938 62 0 0 0 188 376 626 626 626 626 688 688 688 938 938 938 250 188 188 188 0 188 438 438 438 438 500 500 500 750 750 750 438 376 376 376 188 0 250 250 250 250 312 312 312 562 562 562 688 626 626 626 438 250 0 0 0 0 62 62 62 312 312 312 688 626 626 626 438 250 0 0 0 0 62 62 62 312 312 312 688 626 626 626 438 250 0 0 0 0 62 62 62 312 312 312 688 626 626 626 438 250 0 0 0 0 62 62 62 312 312 312 750 688 688 688 500 312 62 62 62 62 0 0 0 250 250 250 750 688 688 688 500 312 62 62 62 62 0 0 0 250 250 250 750 688 688 688 500 312 62 62 62 62 0 0 0 250 250 250 1000 938 938 938 750 562 312 312 312 312 250 250 250 0 0 0 1000 938 938 938 750 562 312 312 312 312 250 250 250 0 0 0 1000 938 938 938 750 562 312 312 312 312 250 250 250 0 0 0 ; USERTYPE matrix8 (Stepmatrix) = 5 0 1 2 3 4 0 90 90 565 1000 90 0 0 474 908 90 0 0 474 909 565 474 474 0 433 1000 908 909 433 0 ; USERTYPE matrix9 (Stepmatrix) = 24 0 1 2 3 4 5 6 7 8 9 A B C D E F G H I J K L M N 0 13 25 53 60 121 132 166 188 229 244 320 324 330 342 357 365 408 421 428 593 619 890 1000 13 0 12 40 47 108 119 153 175 216 231 307 311 317 329 344 352 395 408 415 580 606 877 987 25 12 0 28 35 96 107 141 163 204 219 295 299 305 317 332 340 383 396 403 568 594 865 975 53 40 28 0 7 68 79 113 135 176 191 267 271 277 289 304 312 355 368 375 540 566 837 947 60 47 35 7 0 61 72 106 128 169 184 260 264 270 282 297 305 348 361 368 533 559 830 940 121 108 96 68 61 0 11 45 67 108 123 199 203 209 221 236 244 287 300 307 472 498 769 879 132 119 107 79 72 11 0 34 56 97 112 188 192 198 210 225 233 276 289 296 461 487 758 868 166 153 141 113 106 45 34 0 22 63 78 154 158 164 176 191 199 242 255 262 427 453 724 834 188 175 163 135 128 67 56 22 0 41 56 132 136 142 154 169 177 220 233 240 405 431 702 812 229 216 204 176 169 108 97 63 41 0 15 91 95 101 113 128 136 179 192 199 364 390 661 771 244 231 219 191 184 123 112 78 56 15 0 76 80 86 98 113 121 164 177 184 349 375 646 756 320 307 295 267 260 199 188 154 132 91 76 0 4 10 22 37 45 88 101 108 273 299 570 680 324 311 299 271 264 203 192 158 136 95 80 4 0 6 18 33 41 84 97 104 269 295 566 676 330 317 305 277 270 209 198 164 142 101 86 10 6 0 12 27 35 78 91 98 263 289 560 670 342 329 317 289 282 221 210 176 154 113 98 22 18 12 0 15 23 66 79 86 251 277 548 658 357 344 332 304 297 236 225 191 169 128 113 37 33 27 15 0 8 51 64 71 236 262 533 643 365 352 340 312 305 244 233 199 177 136 121 45 41 35 23 8 0 43 56 63 228 254 525 635 408 395 383 355 348 287 276 242 220 179 164 88 84 78 66 51 43 0 13 20 185 211 482 592 421 408 396 368 361 300 289 255 233 192 177 101 97 91 79 64 56 13 0 7 172 198 469 579 428 415 403 375 368 307 296 262 240 199 184 108 104 98 86 71 63 20 7 0 165 191 462 572 593 580 568 540 533 472 461 427 405 364 349 273 269 263 251 236 228 185 172 165 0 26 297 407 619 606 594 566 559 498 487 453 431 390 375 299 295 289 277 262 254 211 198 191 26 0 271 381 890 877 865 837 830 769 758 724 702 661 646 570 566 560 548 533 525 482 469 462 297 271 0 110 1000 987 975 947 940 879 868 834 812 771 756 680 676 670 658 643 635 592 579 572 407 381 110 0 ; USERTYPE matrix10 (Stepmatrix) = 24 0 1 2 3 4 5 6 7 8 9 A B C D E F G H I J K L M N 0 6 16 34 63 65 71 72 75 83 120 126 126 136 140 156 187 222 234 254 254 319 759 1000 6 0 10 28 57 59 65 66 69 77 114 120 120 130 134 150 181 216 228 248 248 313 753 994 16 10 0 18 47 49 55 56 59 67 104 110 110 120 124 140 171 206 218 238 238 303 743 984 34 28 18 0 29 31 37 38 41 49 86 92 92 102 106 122 153 188 200 220 220 285 725 966 63 57 47 29 0 2 8 9 12 20 57 63 63 73 77 93 124 159 171 191 191 256 696 937 65 59 49 31 2 0 6 7 10 18 55 61 61 71 75 91 122 157 169 189 189 254 694 935 71 65 55 37 8 6 0 1 4 12 49 55 55 65 69 85 116 151 163 183 183 248 688 929 72 66 56 38 9 7 1 0 3 11 48 54 54 64 68 84 115 150 162 182 182 247 687 928 75 69 59 41 12 10 4 3 0 8 45 51 51 61 65 81 112 147 159 179 179 244 684 925 83 77 67 49 20 18 12 11 8 0 37 43 43 53 57 73 104 139 151 171 171 236 676 917 120 114 104 86 57 55 49 48 45 37 0 6 6 16 20 36 67 102 114 134 134 199 639 880 126 120 110 92 63 61 55 54 51 43 6 0 0 10 14 30 61 96 108 128 128 193 633 874 126 120 110 92 63 61 55 54 51 43 6 0 0 10 14 30 61 96 108 128 128 193 633 874 136 130 120 102 73 71 65 64 61 53 16 10 10 0 4 20 51 86 98 118 118 183 623 864 140 134 124 106 77 75 69 68 65 57 20 14 14 4 0 16 47 82 94 114 114 179 619 860 156 150 140 122 93 91 85 84 81 73 36 30 30 20 16 0 31 66 78 98 98 163 603 844 187 181 171 153 124 122 116 115 112 104 67 61 61 51 47 31 0 35 47 67 67 132 572 813 222 216 206 188 159 157 151 150 147 139 102 96 96 86 82 66 35 0 12 32 32 97 537 778 234 228 218 200 171 169 163 162 159 151 114 108 108 98 94 78 47 12 0 20 20 85 525 766 254 248 238 220 191 189 183 182 179 171 134 128 128 118 114 98 67 32 20 0 0 65 505 746 254 248 238 220 191 189 183 182 179 171 134 128 128 118 114 98 67 32 20 0 0 65 505 746 319 313 303 285 256 254 248 247 244 236 199 193 193 183 179 163 132 97 85 65 65 0 440 681 759 753 743 725 696 694 688 687 684 676 639 633 633 623 619 603 572 537 525 505 505 440 0 241 1000 994 984 966 937 935 929 928 925 917 880 874 874 864 860 844 813 778 766 746 746 681 241 0 ; USERTYPE matrix11 (Stepmatrix) = 17 0 1 2 3 4 5 6 7 8 9 A B C D E F G 0 169 233 266 276 289 316 335 354 395 395 584 600 656 698 737 1000 169 0 64 97 107 120 147 166 185 226 226 415 431 487 529 568 831 233 64 0 33 43 56 83 102 121 162 162 351 367 423 465 504 767 266 97 33 0 10 23 50 69 88 129 129 318 334 390 432 471 734 276 107 43 10 0 13 40 59 78 119 119 308 324 380 422 461 724 289 120 56 23 13 0 27 46 65 106 106 295 311 367 409 448 711 316 147 83 50 40 27 0 19 38 79 79 268 284 340 382 421 684 335 166 102 69 59 46 19 0 19 60 60 249 265 321 363 402 665 354 185 121 88 78 65 38 19 0 41 41 230 246 302 344 383 646 395 226 162 129 119 106 79 60 41 0 0 189 205 261 303 342 605 395 226 162 129 119 106 79 60 41 0 0 189 205 261 303 342 605 584 415 351 318 308 295 268 249 230 189 189 0 16 72 114 153 416 600 431 367 334 324 311 284 265 246 205 205 16 0 56 98 137 400 656 487 423 390 380 367 340 321 302 261 261 72 56 0 42 81 344 698 529 465 432 422 409 382 363 344 303 303 114 98 42 0 39 302 737 568 504 471 461 448 421 402 383 342 342 153 137 81 39 0 263 1000 831 767 734 724 711 684 665 646 605 605 416 400 344 302 263 0 ; USERTYPE matrix12 (Stepmatrix) = 17 0 1 2 3 4 5 6 7 8 9 A B C D E F G 0 24 68 156 276 280 292 345 379 420 573 586 652 746 783 837 1000 24 0 44 132 252 256 268 321 355 396 549 562 628 722 759 813 976 68 44 0 88 208 212 224 277 311 352 505 518 584 678 715 769 932 156 132 88 0 120 124 136 189 223 264 417 430 496 590 627 681 844 276 252 208 120 0 4 16 69 103 144 297 310 376 470 507 561 724 280 256 212 124 4 0 12 65 99 140 293 306 372 466 503 557 720 292 268 224 136 16 12 0 53 87 128 281 294 360 454 491 545 708 345 321 277 189 69 65 53 0 34 75 228 241 307 401 438 492 655 379 355 311 223 103 99 87 34 0 41 194 207 273 367 404 458 621 420 396 352 264 144 140 128 75 41 0 153 166 232 326 363 417 580 573 549 505 417 297 293 281 228 194 153 0 13 79 173 210 264 427 586 562 518 430 310 306 294 241 207 166 13 0 66 160 197 251 414 652 628 584 496 376 372 360 307 273 232 79 66 0 94 131 185 348 746 722 678 590 470 466 454 401 367 326 173 160 94 0 37 91 254 783 759 715 627 507 503 491 438 404 363 210 197 131 37 0 54 217 837 813 769 681 561 557 545 492 458 417 264 251 185 91 54 0 163 1000 976 932 844 724 720 708 655 621 580 427 414 348 254 217 163 0 ; TYPESET * UNTITLED = unord: 1 - 2 10 - 12 16 18 - 21\3 23 - 24 26 28 - 33, ord: 13 17 19 - 22\3, matrix1: 3, matrix2: 4, matrix3: 5, matrix4: 8, matrix5: 9, matrix6: 27, matrix7: 25, matrix8: 20, matrix9: 14, matrix10: 15, matrix11: 6, matrix12: 7; TYPESET mytypes = unord: 1 - 12 14 - 16 18 20 - 21 23 - 33, ord: 13 17 19 - 22\3; WTSET * UNTITLED = 1000: 1 - 2 10 - 13 16 - 19 21 - 24 26 28 - 33 , 1: 3 - 9 14 - 15 20 25 27; WTSET myweighs = 1000: 1 - 2 10 - 13 16 - 19 21 - 24 26 28 - 33 , 1: 3 - 9 14 - 15 20 25 27; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 33; END; BEGIN TREES; Title 'Trees from "amalt1.nex"'; LINK Taxa = Taxa; TRANSLATE [0] 1 Oistoceras_figulinum, [1] 2 Amaltheus_bifurcus, [2] 3 Amaltheus_stokesi, [3] 4 Amaltheus_talrosei, [4] 5 Amaltheus_subbifurvus, [5] 6 Amaltheus_repressus, [6] 7 Amaltheus_conspectus, [7] 8 Amaltheus_viligaensis, [8] 9 Amaltheus_wertheri, [9] 10 Amauroceras_ferruginum, [10] 11 Amaltheus_subnodosus, [11] 12 Amaltheus_striatus, [12] 13 Amaltheus_gloriosus, [13] 14 Amaltheus_gloriosus_morph._W, [14] 15 Amaltheus_gibbosus, [15] 16 Amaltheus_salebrosus, [16] 17 Pleuroceras_becheteri, [17] 18 Pleuroceras_transiens, [18] 19 Pleuroceras_solare, [19] 20 Pleuroceras_quadratum, [20] 21 Pleuroceras_apyrenum, [21] 22 Pleuroceras_spinatum, [22] 23 Pleuroceras_hawskerense, [23] 24 Pleuroceras_paucicostatum, [24] 25 Pleuroceras_yeovilense; TREE With_ontogeny = (1,2,((3,(((4,5),(7,8)),6)),((9,10),(11,((12,(14,(15,(16,(17,(18,(19,20,((21,23),(22,(24,25)))))))))),13))))); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1412606826066; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1614250924419646737; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8609146450172342304; mqVersion 301; checksumv 0 3 4245260152 null getNumChars 33 numChars 33 getNumTaxa 25 numTaxa 25 short false bits 33554431 states 33554431 sumSquaresStatesOnly 5.62974291659713E14 sumSquares 5.62974291659713E14 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1680 932; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #1614250924419646737 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #1614250924419646737; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1580 860; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; showTrees 0 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 1; getWindow; tell It; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1580 860; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TreesList.TreesListWindow.ibeam; endTell; endTell; showWindow; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8609146450172342304 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1580 860; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.NoColor.NoColor; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges on; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames on; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize on; toggleColorsPanel off; toggleDiagonal on; setDiagonalHeight 80; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.categ.SmallStateNamesEditor.SmallStateNamesEditor; tell It; panelOpen true; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; showCharacters #8609146450172342304 #mesquite.lists.CharacterList.CharacterList; tell It; setData 0; getWindow; tell It; newAssistant #mesquite.lists.DefaultCharOrder.DefaultCharOrder; newAssistant #mesquite.lists.CharListInclusion.CharListInclusion; newAssistant #mesquite.lists.CharListPartition.CharListPartition; newAssistant #mesquite.parsimony.CharListParsModels.CharListParsModels; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1580 860; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.CharacterList.CharacterListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.CharListAnnotPanel.CharListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharModels.ManageCharModels; tell It; showModels #mesquite.lists.ModelsList.ModelsList; tell It; getWindow; tell It; newAssistant #mesquite.lists.ModelsListType.ModelsListType; newAssistant #mesquite.lists.ModelsListParadigm.ModelsListParadigm; newAssistant #mesquite.lists.ModelsListWhole.ModelsListWhole; newAssistant #mesquite.lists.ModelsListDatatype.ModelsListDatatype; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1580 860; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; endTell; getEmployee #mesquite.parsimony.StepMatrixCurator.StepMatrixCurator; tell It; editModel matrix1 #mesquite.minimal.WindowBabysitter.WindowBabysitter; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1580 860; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; endTell; endTell; endTell; getEmployee #mesquite.parsimony.ManageTypesets.ManageTypesets; tell It; showList 0 #mesquite.parsimony.TypesetList.TypesetList; tell It; setData 0; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1580 860; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; endTell; endTell; endTell; end;