#NEXUS [written Fri Dec 12 13:32:15 IST 2014 by Mesquite version 3.01 (build 658) at AmitSai/192.168.5.183] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=10; TAXLABELS Arabidopsis_thaliana_CAF1ALa Arabidopsis_thaliana_CAF1ALb Oryza_sativa_CAF1AL2 Oryza_sativa_CAF1AL1 Picea_abies_MA_27625g0020 Selaginella_moellendorffii_405999 Physcomitrella_patens_Phpat.003G098500.1.p Homo_sapiens_CAF1A Saccharomyces_cerevisiaeCAF1P90 Chlamydomonas_reinhardtii_Cre12.g550152.t1.1 ; END; BEGIN CHARACTERS; TITLE Histone_chaperone_CAF1A_matrix; DIMENSIONS NCHAR=1894; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX Arabidopsis_thaliana_CAF1ALa ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDEVSTVN---------------------------------------ENENR---------KTMIEPKKLNKRKREPTAIENLTSEEKESQISSLNLEMKGLFDYFREVMDKSKRTDLFSGFSE-CSSLNSMVALLMEEMSLPLSKLVDEIYLKLKEKTES-----VTMVAVKSAVVSVGQRVSYGVLNVDADVLEDDSESC---------------------------------------------------------------------------LWCWETRDLKIMPSSVRGVLKLRRTCRKKIHERITAVSAMLAALQREETEKLWRSDLSKAAEKLGKILSEVDIRSFMDNMMQKNSSEMAEKDS------------------------------------KREEKLLLKQLEKNRCEAEKEKKRMER--------QEKEQKLLQK---------------AIVDENNKEKEETESRKRIKKQQDESEKEQKRREKEQAELKKQLQVQKQASIMERFLKKS------------KDSS-LTQPKLPSSEVTAQELSCTKHENEIGKVVQAIDNAFSTTCEAT-VDDIRREHFASWRQL---------------------------------------------------------------------GHLLSSSKKH-WGMRRQPKSELFPKLKLSTNSG--VTSDG-----EPNMEKQGDGCEENNFDGRQ----------------CKPSSSNRKKSRRVK--QLLQFDKSCRP-------------------------------------------------------------------GFYGIWPSQSQVVKPRRPLQKDP-ELDYEVDSDEEWEE------EEAGESLSDCEKDEDES--LEEGCSKADDEDDSEDDFMVPDGYLSEDEGVQVDRMDIDPSEQDANTTS-----------SKQDQESP-EFCALLQQQK--HLQNLTDHALKKTQPLIICNLTHEKVSLLAAKDLEGTQKVEQICLRALMVRQFPWSSLIEISINDIQDE-------DQEASKFSCSQSTPPSNSKAKIIPDSDLLTVVSTIQ-SCSQGINRVVETLQQKFPDVPKTKLRQKVREISDFEDSRWQVKKEVLTKLGLSPSPDK---------------------------GGKRLPKTISTFFSKRCLPP--S---TKPQPAVEDAAERLENENA------------------------------------------------------------------------------ Arabidopsis_thaliana_CAF1ALb ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDEVSTVN---------------------------------------ENENR---------KTMIEPKKLNKRKREPTAIENLTSEEKESQISSLNLEMKGLFDYFREVMDKSKRTDLFSGFSE-CSSLNSMVALLMEEMSLPLSKLVDEIYLKLKEKTES-----VTMVAVKSAVVSVGQRVSYGVLNVDADVLEDDSESC---------------------------------------------------------------------------LWCWETRDLKIMPSSVRGVLKLRRTCRKKIHERITAVSAMLAALQREETEKLWRSDLSKAAEKLGKILSEVDIRSFMDNMMQKNSSEMAEKDS------------------------------------KREEKLLLKQLEKNRCEAEKEKKRMERQVLKEKLQQEKEQKLLQK---------------AIVDENNKEKEETESRKRIKKQQDESEKEQKRREKEQAELKKQLQVQKQASIMERFLKKS------------KDSS-LTQPKLPSSEVTAQELSCTKHENEIGKVVQAIDNAFSTTCEAT-VDDIRREHFASWRQL---------------------------------------------------------------------GHLLSSSKKH-WGMRRQPKSELFPKLKLSTNSG--VTSDG-----EPNMEKQGDGCEENNFDGRQ----------------CKPSSSNRKKSRRVK--QLLQFDKSCRP-------------------------------------------------------------------GFYGIWPSQSQVVKPRRPLQKDP-ELDYEVDSDEEWEE------EEAGESLSDCEKDEDES--LEEGCSKADDEDDSEDDFMVPDGYLSEDEGVQVDRMDIDPSEQDANTTS-----------SKQDQESP-EFCALLQQQK--HLQNLTDHALKKTQPLIICNLTHEKVSLLAAKDLEGTQKVEQICLRALMVRQFPWSSLIEISINDIQDE-------DQEASKFSCSQSTPPSNSKAKIIPDSDLLTVVSTIQ-SCSQGINRVVETLQQKFPDVPKTKLRQKVREISDFEDSRWQVKKEVLTKLGLSPSPDK---------------------------GGKRLPKTISTFFSKRCLPP--S---TKPQPAVEDAAERLENENA------------------------------------------------------------------------------ Oryza_sativa_CAF1AL2 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEGGKLLGVAHPEPANNIDADLRYDLGQSRMQVDGPVVLNRS---------AELEPSDSMAIDDVPVEA---------------------------------------SSQPAPAKQSPALMDTIVEVQKQLKRKR-ASSGPALAAADKDALVAGCCQELEGLLEYYREVSGHRMQFEVGN------LSTNAAIGCLLEESSLGLSKLVDEIYEKLKG-MEG-----VSATSVRSSVLLIGQRMMYGQSSPDADVLEDESETA---------------------------------------------------------------------------LWCWEVRDLKVIPLRMRGPLSTRRTARKKIHERITAIYSTLSVLEAPGAEAQVN-DMRKASLKLSKALNLEGIKSLVERATQKSNIERGAKNTGSTAKEPMQEMVKSNNDTGIIENVDDSQLQKNTSTNEKDTQKAQKQVEKELKQKEKEEARMRKQQKKQQEEALREQKRREKEEAEMKKQQRKQEEEAQKEQKRREKEEAETRKQQKKQQEEAEKEQKRREKEAVQLKKQLAIQKQASMMERFFKNK------------KDSEKLEKPGGKDSGVQTTDP-CTTNKEVVPLVTSIIDSSFSQKENWA-LEDLRRLQISGWQKL---------------------------------------------------------------------SSYNRSSR---WGIRNKPKKEAFKELKLQKTSDNMLEEIL-----SPNEDTCHNLSQENEPDKSAND---VDMLPAVELQFHGTNHANPLPTRSIKR-KLLQFDKSNRP-------------------------------------------------------------------AYYGTWRKKSAVVGPRCPLKMDP-DLDYEVDSDDEWEE------GIQIESLLD-DKDE-------------------------------------------------ASSSP-----------PDQCAEVE-EFRALLRQQK--VLNTLTEQALRKSQPLVISNLTHEKAELLTAGDLKGTSKIEQLCLQVLSMRICPGGATIDLPVIDSSSA-------NAEETNQLNVKSSP---AAASAIPDTDLAEIVKVIG-SCRDGINKLVESLHQKFPNVSKSQLKNKVREISEFVDNRWQVKKEVLSKLGLSSSPAS---------------------------SKK--PKSIATYFSKRCLPPEEA---ILASPELRLKSKTTQNVNGDTDIPRINLLPSSQ---------------------------------------------------------------- Oryza_sativa_CAF1AL1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDGDEAKE---------------------------------------SAMDG----------LASETASRIPDVSKKQPKRKRTLVDEEVASAGLQGEIDALFDYYKEVSGYQLKPEEIG-----CSTNDSIVACLLEESSLPYDKLVDEIYRRMEL-RDG-----VTKSFISSAVNNIGQRMSYGISDIHDQVLVDESKSK---------------------------------------------------------------------------LWCWEVYYSYLYCIVIG-------------------LNVDCMLLNLKSVTILMQYVTVDASLKVRKEKELKHIKEK-----------------------------------------------------------------------------------------------------------------AEKEAKRAEREKAEQKKRSKKHQEEVEREQKRRERQQAELKRQASIQKQANFMQHFLRGK------------KGGN-MESLGNHHSMRSPHPNVFSKIEDSS--ATSAMDCTLSEENQLR-SDEIWKLQIARWRKL---------------------------------------------------------------------YHQKELCR---WSDRKNPKIELFKELKLQKCPATAPSEYV-----STPSKEQSSQMEHQGSLNFSKL---LDQSYDENADTSKTTNANTSSSVWRVK-KLLQFDKSHRP-------------------------------------------------------------------AYYGTWTMKSSTVSARHPFKVDP-LLDYDVDSDEEWEE------EEPGENLSDFDNDDEEA--MGEKDSKHDAEEETDNSFVVPNDYLSEDEGVQFEPLSG--KLDDTCRLL-----------SIPRVAIE-ELDVVLQQQK--ALHSFTEHALKKDRPLVIYNLDHGKAYLLDAEAITGILKVEQLCLQALCMKEYLGAPIIDVPVDINFPI-------KDLEIGRLN-RKGPSTPVASKSISGSDLPEFVKIIS-SCPYGIGKLVESLRVQFPCVPKLQLKNKIWEIADFTNNRWQVKKDILDWCGLSLPPDR---------------------------GIQQMQPDESGDSVQPSPQP---------GAKLEIHKHQIDA--------------------------------------------------------------------------------- Picea_abies_MA_27625g0020 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MTEAAPMSGIVEGGKVENDENVPPFSVVNTEEKSFKLAATGSEKPFYNPLPRSRGRPPKHSVNSSPNCKGNRKDSLPLKSPRPRGRRPKNAVTLLPSSDGMKPDQSPLNLSSSPGLATENTTMPLNLSRSPGLAAENTTMPLPKPKNMKLDSLPLKS?PAEFKQSGNLNEPKASEEQYVLCTDDIVMTPVNPNSPVKASGTSDSKIRVSSTSCTPSTKKGSKRKRSLFLETLDSESKAARIHQFEQEITSLFQYFNEGFENNSSAGSDEIVDMGNNTTNVIVARLLEESRLPYSKLVQQIYEKLKNKIDQSGGTEISPAAVRSSVLLIGQRPFYGIPNADADVLEDESETC---------------------------------------------------------------------------LWCWEVKDTKLLAKSQRDLISIRRRCRKKIHERITAISAMLSALSSLESEGSGNIDVAKAEELLAKADDEMSIRATVADLLQKNHAQIMVKQA------------------------------------KMKEKEAIKEKERNERKSEMEQKRLER--------ELKREKIQ-----------------QEREQVRAQKEAIIQEKEKKRQQEEAEKEQKRREKEEAEMKKQLAIQKQATLMDRFLNSK------------KDTP--NTQTVPTVLDETTHNSLQQNAQICSGVMMSMDQILLQAAETE-TGDLLRSHLEAWHNI---------------------------------------------------------------------NWRVSAQRHISWGIRRKPKVALFNELRLQGASAEAEAVALTKVQSSTNKKRTYVDIEDQEFMAKNLANDWEEVSSDSLLGNNGSTTAHRETRLHNKRRKLLQFDHSHRP-------------------------------------------------------------------AYYGTFSKKSDGIRPRNPFRKDS-SLDYENDSDEEWEE------EDPGESLSDCDKDDEEEKIEAETDKFKSEEDDDSDGFFVPDGYLSEDEGVCLDDIESDMEEDMQDDLPRYSV-SQNG-GNNQRLETESEWHAFERQQK--VLENATEQALRSNHVFIITNLHNTKSEHSPP-EPNARHRLEQICLQALRIQICLPEILIELPSEPRTEA-------SPKEDRELSKRQKK----NYTVFPDSDVPELIRTIQ-SSTQGMNKIVESLLNKFPSIPKKQLKSKIREISDFVENRWQVKKEVLEKLSIFPPVQVSEVTSTPTLNASEVTKTPTLKTLEVTETPTKKIKGITTYFSKRCLPPEAAGMNVQSSPDIDSSEKLKNMLPAMVDECKVDML-------------------------------------------------------------------- Selaginella_moellendorffii_405999 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDQEKEAQKEKKRLAKEEAERKRNAVIQKQAGIMNKFFVKE------------KPPAPLERSP-------------VKEAPKENVVMSAMDRVLATIHTEANEVEVFRRHFDEWRTS---------------------------------------------------------------------RRQKKFVT---WGLRREPKVDVLKQPKLQRDVDVSNEISP------------------------------------------------TALPSGTPCMKLLQFHKCFRP-------------------------------------------------------------------AYYGTHSKKSNVIGARHPLRKEP-SLDYAVDSDDEWEEVARLVLEEPGENLSDLDEPEEEE---------KMDDDDSADDFVVPDGYFSADEGLDMDTCE------------------------NQNSCSSSQVPNTENVKN--ILDSVAERALKHNCPFVLRNFTAN----STSQDSDSVSPYRDSCLKALEIRVLAEDISIEPVTEEYEAY-------PQEVKTPITGVRRR----RKRELADSALPEIVRFLQESSTLGMKKIVESLSQRFPGIPKSTLTSKVREISTYTDNHWKVKDEVLALLQPQK------------------------------------------------------------KKSLDDEGETLLL--------------------------------------------------------------------------------- Physcomitrella_patens_Phpat.003G098500.1.p ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MVISKKTPKEKQPHSIPAEREKLKREKAERK---------------------------------------------------------------------------AEKLRIRAEKEAARAER--------------------ELKKQQEEAEKEQRRKDRELRKKNEEEKKQLDDVEKEQRR----------------------------------------------------------------------------------------------------------------KEKEAIEAEKELKRKERELRRQQEEVEKEQKRKEKEVAEKKRQLLLQKQATIMDRLFRRKESI---TPVAHEKQSPAQGVSSPSPAHQTPEGISTSRTEPSTVEMVMRLDEGLKVPCTLT-EEEILRGHVSSWQEK---------------------------------------------------------------------WKRRSLEPFRRWGVRMAPKVTVYRELRLQGASASFPRRVESAGNAVSSSTLEAQAPSLKRSREDFESIRDCKVEDDCILLNEDPIDSPPRKKQCNTRWKLLQFDKSHRP-------------------------------------------------------------------AYYGTFSKLSSTVGPRHPLRKDP-SLDYEVDSDEEWEE------EDPGESLSDCEDKEED----------------------------------------------------------------------------VEKVDS--ELDEDAADGFVVPDGYLSE--------------------NEGVHLEETDVEDTEKAAEVKAPCESGTGA-------ECMVSVDPMVRKQQ---------------HLIRLLDNVTKHALQRNRPFLVSDLLERPSEKSTENQTERLCFQALRMCVVAPNLLIGSI------------------------------------------------------------------------------------------------------------------------------------------------------------ Homo_sapiens_CAF1A ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLEELECGAPGARGAATAMDCKDRPAFPVKKLIQARLPFKRLNLVPKGKADDMSDDQGTSVQSKSPDLEAS--------------------------------LDTLENNCHVGSDIDFRPKLVNGKGPLDNFLRNRIETSIGQSTVIIDLTEDSNEQPDSLVDHNKLNSEASPSREAINGQREDTGDQQGLLKAIQNDKLAFPGETLSDIPCKTEEEGVG-----CGGAGRRGDSQECSPRSCPELTSGPRMCPRKEQDSW---------------------------------------------------------------------------SEAGGILFKGKVPMVVLQDILAVRPPQIKSLPATPQGKNMTPESEVLESFPEEDSVLSHSSLSSPSSTSSPEGPPAPPKQHSSTSPFPTSTPLR-----------------------------------RITKKFVKGSTEKNKLRLQRDQERLGK--------------------------------QLKLRAEREEKEKLKEEAKRAKEEAKKKKEEEKELKEKERREKREKDEKEKAEKQRLKEERR-----------KERQEALEAKLEEKRKKEEEKRLREEEKRIKAEKAEITRFFQKPKTPQ-APKTLAGSCGKFAPF---------------------------------------------------------------------EIKEHMVLAPRRRTAFHPDLCSQLDQLLQQQSGEFSFLKDLKGRQPLRSGPTHVSTRNADIFNSD------------VVIVERGKGDGVPERRKFGRMKLLQFCENHRP-------------------------------------------------------------------AYWGTWNKKTALIRARDPWAQDTKLLDYEVDSDEEWEE------EEPGESLSHSEGDDDDD---------MGEDEDEDDGFFVPHGYLSEDEGVTEECADPENHKVRQKLKAKEWD-EFLAKGKRFRVLQPVKIGCVWAADR--DCAGDDLKVLQQFAACFLETLPAQEEQTPKASKRERRDEQILAQLLPLLHGNVNGSKVIIREFQEHCRRGLLSNHTGSPRSPSTTYLHTPTPSEDAAIPSKSRLKRLISENSVYEKRPDFRMCWYVHPQVLQSFQQEHLPVPCQWSYVTSVPSAPKEDSGSVPSTGPSQGTPISLKRKSAGSMCITQFMKKRRHDGQIGAEDMDGFQADTEEEEEEEGDCMIVDVPDAAEVQAPCGAASGAGGGVGVDTGKATLTSSPLGAS----------------------------------------------------------- Saccharomyces_cerevisiaeCAF1P90 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEQHLKSIPLQDDTKKKGILSFFQNTTTVKSNK-----------------FLTKEKDVITLDDPKEDVSG--------------------PMIETVKQETMKSINKECADEMKTTPKKA---------------------------------------------------------------------------NAEDKLLCYKNSP------------------------------IQSTKYDRNTNKQVPNGNIIAIETKSRSSSPCS------------------------------------------------------------------------------------------------------------------KRELSSSKKEEAKREKELKKQQRAEEKHRKELLRQEEKKKKELKVEEERQRRAELKKQKEE------EKRRKEEARLEAKRRKEEERLKKEEEIRLKEEAKERAQSRIGNFFKKLSDSNTPVVEKSDYEKFFLPF---------------------------------------------------------------------YAKDGVRVSNKWKLTKVELEGSKRKIDDELLNSKDKTSSDDLLNWLQSRRLPRGHKIKRKAVDVLQQMP-----------LKEKTDDELQSLLAQVPHKYIKFYENVRP-------------------------------------------------------------------PFIGTYS-MDFTLPPNDPFSTKGTGFNYDYDSDVEWVNEEE---EGEVDNLESGEEEEEEE--------------------------------------------------------------DDEDVPSEGEFDGFLDSEENSDLDGLPCAKRKFVGPLIPTICLKSNFENLSEENKRYLQQLKAEVIIETDGPIDPFKEPKTSSLPSKRSN-------SDLQAQTASQSQSPEKKQKAMITDPMDLLRLFDGVQ-DSTFSLGTVTEIAQKNLPQYNKQTIKNTIKEYAIRSSGKGDLPRKWVIKDAQNWENLR---------------------------------------------------------ANANMPTPSL----------------------------------------------------------------------------------- Chlamydomonas_reinhardtii_Cre12.g550152.t1.1 MLGLCALAAPAYLRERLVATLAAADALAAHAVLLEPPAAGAKPPTAAARRTSESRAAKAWNRLCRLATRAAVEETYRSAASSLMTAGGSAAATLARKERERKEKEDAKQRQKEEKEEAKARAKEEEAKAKEAKRLAEEEARRKAKEVKTAAKEAAKAGFASSTGLKKSQNLMDTFFKRSGFKPAGGAAAAPVPATDLAAAVPAASADGDGGAVSDLQQRQQQQQQPGASGPAGTPQPRAGATPPGRGAPEASAGVAPAAAAGGGAPATGGGTGGAAAGPRMMFNFNKVERRIPDAAVVAAMDADAARLPLPASELAVDFRAAHGRWRQQRADRRRMLGVPPTWARRPGAPTDLRALAAAYYGDVGALGLEPTALRTWRRKLIAFPKEESVRPPYYGSFSRTSAAVTGRRPFGRDTGVDYEVASDDEWEEEPEGESLSDSGDEADSQAGGGGGGGGEEEEEDGFIVGDDHLSDDEGAQLSGDEDAMDVDGAAKTPRAAAAAAVTSGHVRFMDPRLQQLEAAIDRVRSNNRPILLVRPPPPAAALGADGGQAVAAAAAALRAEPRPGLNTGLDPGLLGALRPVVHRPDVALAPPLELDVYSAYAAAATGGGAAAAAGWDGAVAVAAAAPAAREDAGAGVAVGAARVSMGGAGAVGGSAARAGGGGAGRGGGRPASAPLGEAELTALALYMSACQDKRADKIVEGFLASLPPAAPGAKQPAKVKLRDAVKRLGAWSASAKRWLLHGGDVAAAVAAAVAAALAAQQQQQQQQQQAAAAAAAAAAAAAVGSGVSPLPALTPHGSLTPLAAGAGGGGGGNGSTPLGVGGTPLLPPGPPAPTPMPQLRAPLPSPMTGQGPLLLAPACTPAEHAAAAAANTTPHNHHQQQQPLPSPALLQPPLGAGAVPPSQLAQALARTAAEAVAAPLPTPSPAPSAGGRQPTPTTSGLGNGRSAPAAVAGSRSILDLFNRTKARASSGGGGAATAAAAGAAPGATAADAAQQPMECDGAGDGAGPAERQQQLQQQPAAASGRAEGAGGGAADTGGGGGQSDAHMEVCGESGQCQPSIAGQQQQQPQQPQEQGEGQAAPRDATRQQSQLSGGVGAAGTTPSANADGDRRRAAAEEEEQAERGSAGRRDEAEEQEDREPAAASGAEAPAAARGPIARPMPPPLPPVPEFERHGTAHPYWRALTTWILGGGRSSSCSGGGGGGGRGGSSSKAAGWHDVQEVLAVFDAAELRPRLRAGAVPLDLVRALLAVCQHVRPSHLRSGAFKALGNLAVALVEEEEAQAAAAAAQGGAATPAGGASPAAGRRPGASSHAVLGGSAGGAASSPDSVSRKRSRGGEQEQPPPQLPPTSSAELQPAASGQQPELLQPQVPQQLLQLQPGLLQLQPGLLQPGRCRPAPVSLLALYRLPSLLPALVRGVAQSEVCSEKDKAARGAAKTLAALVGPGVPPLRSNAPFAYQRQQQQQQQQQGEGGSPDPGQLQPREEGGPPLPAELLAAAAAFRLRVASHPDLHERLRAAATKPPATAASCAATVYGATALQGLQRLLRDPAAAVVVTKTAKRVAREAEAAAEGWPAPPPVAADTASQWAARLFVNTVKASRNALHEGTRKGLVQVAVALLDHPHLQAALPPPPSPLTSNFPAGDVGNDSTLQPLHPAAAGGGGGGGSGLRALAAALNGQDPRTQLPAACVGLLVAELEHVAQRALEAAARAEAAAEAEAADDDDGEALDAPARRSTRLRRRRAAAAAATAAAVAATGGDDGGAAASPAAAAATPPPPAPLQFASDGGGGGGYQVDKCTRVRLLLALHAAERALRYLRSEAEAAAARRGSSGGGGGGYGGGGRRRALHEQEDTAVAIRQLLEQLGEAADALSRPHDPQLQQLASTVGCLAEDLTQQQ ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1894; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1894; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 1894; END; BEGIN TREES; Title Histone_chaperone_CAF1A_tree; LINK Taxa = Taxa; TRANSLATE [0] 1 Arabidopsis_thaliana_CAF1ALa, [1] 2 Arabidopsis_thaliana_CAF1ALb, [2] 3 Oryza_sativa_CAF1AL2, [3] 4 Oryza_sativa_CAF1AL1, [4] 5 Picea_abies_MA_27625g0020, [5] 6 Selaginella_moellendorffii_405999, [6] 7 Physcomitrella_patens_Phpat.003G098500.1.p, [7] 8 Homo_sapiens_CAF1A, [8] 9 Saccharomyces_cerevisiaeCAF1P90, [9] 10 Chlamydomonas_reinhardtii_Cre12.g550152.t1.1; TREE Imported_tree_1 = (((((((1:0.0,2:0.0)1.0000:0.43038765,(3:0.28100948,4:0.50911336)0.8490:0.09170818)0.9510:0.20389282,5:0.37458323)0.4920:0.10842904,6:0.6718503)0.8630:0.27467854,7:0.70547739)0.9200:0.48504441,(8:1.36294184,9:1.52549086)0.5380:0.2150821)0.0000:0.23638372,10:1.97695668); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1418371335836; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1376259389618286678; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 4111857489478603327; mqVersion 301; checksumv 0 3 3982937015 null getNumChars 1894 numChars 1894 getNumTaxa 10 numTaxa 10 short false bits 1048575 states 1048575 sumSquaresStatesOnly 4.5750932301658E13 sumSquares 4.5750932301658E13 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 184; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1014 500; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #1376259389618286678 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 922.1418370177731.8521140571919055512; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 830 428; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.ornamental.CircularTree.CircularTree; tell It; setEdgeWidth 6; getEmployee #mesquite.ornamental.NodeLocsCircular.NodeLocsCircular; tell It; branchLengthsToggle off; toggleScale on; endTell; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #4111857489478603327 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 184; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 830 428; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;