#NEXUS [written Thu Dec 25 18:14:15 IST 2014 by Mesquite version 3.01 (build 658) at AmitSai/192.168.5.34] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=12; TAXLABELS Selaginella_moellendorffii_267866 Chlamydomonas_reinhardtii_Cre13.g575950.t1.2 Saccharomyces_cerevisiae_CAF1p60 Physcomitrella_patens_Phpat.001G056500.1.p Arabidopsis_thaliana_CAF1BLa Picea_abies_MA_6422g0020 Oryza_sativa_CAF1BL Arabidopsis_thaliana_CAF1BLc Selaginella_moellendorffii_109484 Physcomitrella_patens_Phpat.001G056500.2.p Arabidopsis_thaliana_CAF1BLb Homo_sapiens_CAF1B ; END; BEGIN CHARACTERS; TITLE Histone_chaperone_CAF1B_Matrix; DIMENSIONS NCHAR=1146; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX Selaginella_moellendorffii_267866 -MIVEKPEWLRHEG-LQIFSVDFQ----PSGQRCATAGGDHKVRIWNTRP--LMKEGE-ADRGGEKLLATLCDHFGSVNCVRWSKSGLYVASGSDGSLVLIHEKRHGTGTVEFG----------SGEPANVENWKVCASLRG-----HTADVVDLAWSPDDSMLATCSLDNTVRIWKMPGGSSVAVLTGHSSLVKGVAWDPIGSFLASQSDDKTVMIWQTS--------------------------------------DWAAVHRAEGPWRKSVGSTFFRRLSWSPCGHFIITTHG------YENPSHTAQVLERG--------DWS-GTFNFVGHNAPVVAVRFNHSMFRKQPLPPPENNGEEELLQMDPKKVPKEMVPYNVVAMGSQDRNITVWT-TANPRPVFVGKHFFTQSVVDLSWSPDGYSLFCCSLDGTVASFHFEAKELGHIVSEKEMEEFRRNRYGD-------------------SRSRQESLAESPAQLFIEATAAAKKVGN---STTIVSN------------------------------DQAAAVAVAAAPLP-----PPPAKQTPVKQREYRQQDGRRRIIPEALHTEDDDCWEAAAVA-----------------------------------------VVAELAVFVSGMAPARAKPSK------FQAWRASQLRGPDGVLSVQVRIPDEESLDGP----AVAPICLEAKPVRVQDAAAGRGETG--ETDLVCSQGGEIRWRDRFAGKVTALTGNTNFWAVGCEDGSLQVYTMAGRRALPSMVVGSAAAFMDCTRG-WELLLLTRGGTMHVWDLRQSQCLLNESLLSLTLSS-------SATSSAKENGVMRIISARFSEAGAPLVVLANGHAFLFHSKMRSWLRIADDFFPSSSFVSTWPPSGDGELAGLQKGAATLGKTNFSWNRTLINEK------YQTRAHLEDQLAAALALKSAEEYKRHLISYTRFLTREADEVRLRELCEDLLGPLFVPDS-------------------------------EPCYDSQPTTSTWESYVLGMKKRELLKNEVLPAMASNRAVQRLLNEFLDMLSEYEDTQ----------------------------------------- Chlamydomonas_reinhardtii_Cre13.g575950.t1.2 MPFFDKPEWIQHAGGVSIMGVDLD----PSGVRMATCGSDNRIRIWAMRP--VLSEVAEQDPAVPKQLAVLCDALTPINAIRFAPSSQLLAAGTDDSEGLVYELREGRGSAVFG----------SGESANIENWRLRIKLRG-----HASNVLDVAWAPDSRRLATCSVDNKVKVWDTTNGHCLRTLEGHVGHVKGVAWDPFDFFLASQGD-REAIVWRLE--------------------------------------DGSQVAIIREPFEKAPIVSFGLRPGWSPDGQTLALPNG------YDKGMHTVPLIKRN--------SWVPGEFCLVGHKGPVTAIRYNPHLYTPAHKPGAAPTS------------PDDEAAGSIITAGSTDKTFSIWAPCAGDEPLAVARGFFGGMVNDVAWSADGRVMVVAAYDGSVATALFADGELGKRVPQAEVEALLAQLYGDPALRAGAAGREGGGGMGLGGRGGHSGLAAAPELMALEARARAEVEREERLNSRLRADGAAAAAAGAGAVVGAGTSGAAGPAAAGAAGLRPPLGAATGLARAAMPPTAPAAARVPLAVTQNGVGSAGRGAGVGSNSPAKAGAGGARGGPAG------------------TSGRDADQPPAKRIAVQPVGSAATAMGARAGAATAATTATAPPGVAAGAGAGAGGHGAGGGSAAASPVLVPVEALHAHFSFLIHAQPGSTGEGQVELQALNTGRDARGRPAGELLCLVGGQRCWGDSVQGAVVALAGSSRLAAAATSNGDLMIYSSAGRRLFPPIRLGWPAAFLTVAPGSSLLLALLTDGSLKLWDFGAGECLLESSVAPLLLPPGAGVPGLAAAVAAAQPPVLKVTAVRITASGAPLVVLSNAHAYVHHGGLRTWVRVADDAFPASAFTTNLTSAATGELSKLQAAVAQRRHPADVMTTSALHAARPAAAARSEQAVLEHNLASAAALQSPAEWRLWLITYVRRLAADEDESRLRDLISELLGPLRWTPATHAAAAAGSSRAGGANAPAAAAAAAATSSSWEPALGSSVSGGRWAPVFLGFDKRRLLREVVLKEVARNRSYQQLVAEVLEQLKQVDAAAAAAAAVQQPHARGQADGVNAPAGDGAAAPAGAASSQPMVMG Saccharomyces_cerevisiae_CAF1p60 --MEASHLQIYWHDSQPVYSLTFQKNSAN--DKLFTAGGDNKVRIWKLNRDENGQNGGVRKIESLDFLGSLTHHEQAINVIRFNSKGDVLASAGDDGQVLLWKQEDPNTQQESVVRPFGMDAETSEADENKEKWVVWKRLRGGSGATAAAEIYDLAWSPDNRNIVVACMDNSIRLFDVGAGMLVCGQSDHGHYVQGVAWDPLNQFILSQSADRSLHVYGVI-------LSSAGVVTGLKLRSKIAKAELPC---------PGDVLRTNYLFHNETLPSFFRRCSISPCGGLVVIPSGVYKVAG-DEVANCVYVYTRSGILNSAGGVKNRPAIRIPSLKKPALMAAFSPVFYET-------------------CQKSVLKLPYKLVFAIATTNEVLVYD-TDVLEPLCVVGNIHYSPITDLAWSEDGSTLLISSTDGFCSYVSIDTETQFGSRIEPPAMHAEP-----------------------------------------------------------------------------------------------------------------------LDTDESAVAAKNQREAGG---------------------------------------------------------------------------------IVNMLPVKKIPCNS------------------------------SDSKKRRIHPTPVDL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Physcomitrella_patens_Phpat.001G056500.1.p --MKGATVQIAWHGSEPVLSLDFH----PHSGLLATAGADHDIKVVLHRH-IWSVHQKESGSPTVEFEADLCYHSKAVNVLRFSPSGQLLASGGDGGEILIWKP--------------------IERADKKPSWKVLKTLQL-----HVRDVLDLAWSPDSLSLMSGSVDNQCMIWDVVSGKVLQVLNDHQHFVQGVAWDPAGEFLTSISSDRTCRIYSRQSVPKSKKRKLAVVQNMFTCKQVLAKSDALPSKTNITIDADGRVAKASQLFHDETLPSFFRRLAWSPDSSFLVVPSGLHRIAHEAPSCNVSFIFSRS--------DLSRPCIHLPAPTKPVVAVRFCPVIFSLRENETE------------KGSSSGFALPYRLVFAVATLDSLYVYD-TQRSEPIVIFAGIHYAAITDIAWSADAQYVAVSSQDGYCSLLIFHGNELGTKLSSGDVPANIAKFLPE---------------------------------------------------------------------NLLGKPQESLPNSTELSQVSEPVGLMNEEQSSP----------IVICPRPLKHRRITPTALPATCSPIVQKQ---------------------------------------------IADQTSITVSDKKLQRITPIALTEDGPSSSGNCLDTETVHTPSSTQNSLSAVQAADAAETPDSSTCEASSPGAKKRLRINPIPILAGEGALNSGGNVIPRRRPTDCDQSASIAKFRSLESCLQEQGVAGPATVSTE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Arabidopsis_thaliana_CAF1BLa --MKGGTIQISWHDGKPVLTVDFH----PISGLLATAGADYDIKLWLI-----NSGQAEKKVPSVSYQSSLTYHGCAVNTIRFSPSGELLASGADGGELFIWK---------------------LHPSETNQSWKVHKSLSF-----HRKDVLDLQWSPDDAYLISGSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAWDPLAKYVASLSSDRTCRIYANK--PQTK-SKGVEKMN-YVCQHVIMKADQQR-------GDETKT-IKTHLFHDETLPSFFRRLSWSPDGSFLLIPAGSFKVSPTSEAVNATYVFSRK--------DLSRPALQLPGASKPVVVVRFCPVAFKLRGSSSE---------------EGFFKLPYRLVFAIATLNSVYIYD-TECVAPIAVLAGLHYAAITDITWSPNASYLALSSQDGYCTLVEFEDKELGEAVSISG-----------------------------------------------------------------------------------------------------------------------------------------LLLVLSLLNLPE------------------------------------------------PD----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Picea_abies_MA_6422g0020 --------------------MKFW----SLHESESKK-----------------------ENPRASYESSLSYHSSAVNVLRFSPSGEQLGSGADGGELLIWK---------------------LHYTENGNSWKVLRTLSF-----HRKDILDIQWSPDGAFLISGSVDNSCIIWDANKGAVQQILDAHLHYVQGVAWDPAGQYVASLSSDRTCRIYINK--PQTARAKNQEKLN-YVCQHVIAKAELQK-------QDDGSS-TKFHLFHDETLPSFFRRLEWSPDGSFLVVPAGIHKFSADSSASNTSYIFSRK--------DFSRPALQLPGASKPIVAVRFCPVIFTLHATRS----------------DAPFKLPYRMVFAIATLNSLYIYD-TESSSPIAIMAGLHYASITDIAWSSDAKFLAVSSQDGYCTVVEFENGDLGSPASISEIPSYVASYLPQ---------------------------------------------------------------------VTLDSTNSNGERMDVDISVVDGKDMNKESKISTVEGVKTAQAMGPKQSEAVREENLNLSNVPVLVTSISGSL---------------------------------------------SNGEKSTSSQEKQEQNLQPIADS----AAKTGPAKAETEKPSRRRITPIAVKTAQDIGQNQSEAVRAENLNLSNDPVLVASISGSLSNGQESTSIQQKQEQSVQPIADAADMTGPITAEPGKPSRRRIVPIAVEKP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Oryza_sativa_CAF1BL --MRGGTVQINWHEQQPVLTLDFH----PVSRRLATGGSDHDIKIWVI-----ASDDSDKKLPTATYHSSLSSHSSAVNVLRFSPSGENLASGADGGGIIIWK---------------------LHSTDDGEAWKVQKTLLF-----HHKDVLDLQWSQDGAFLVSASVDNSCIVWDAIKGSVQQKLEGHLHYVQGVAWDPLGQYIASLSSDRTCRIYANK--PQGK-SKNTDRMN-FVCQHTLVKAEHQN-------HDESKPPVRAHLFHDETLPSFFRRLAWSPDGSFLVLPAGLCKYS--SEVINTAYVMSRR--------DLSRPAIQLPGASKAIVAVRFCPVLFKLRGSQS----------------DCFFKLPYRVIFAVATLNSLYVYD-TESVAPILIHAGLHYAAITDIAWSSDAKYLAVSSRDCFCTIIEFENEELGLPYNLSGT-------------------------------------------------------------------------------------------------------------------------------KELDEGNTNCENMKPLKVDSMEID---------------------------------------------AGSSKAKIKASSAAVEVTPSPPV----LAQNNILMTKDVAEG----NATSENDRPSAVDNMEVDVGENKAKMEVTPVAVQVTAPPVSTKNSASS---------------------------KPTKKRITPIAIN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Arabidopsis_thaliana_CAF1BLc ---------------MDVLSIPFV----FLH-LVCIR--------------------------------------------------ELLASGADGGELFIWK---------------------LHPSETNQSWKVHKSLSF-----HRKDVLDLQWSPDDAYLISGSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAWDPLAKYVASLSSDRTCRIYANK--PQTK-SKGVEKMN-YVCQHVIMKADQQR-------GDETKT-IKTHLFHDETLPSFFRRLSWSPDGSFLLIPAGSFKVSPTSEAVNATYVFSRK--------DLSRPALQLPGASKPVVVVRFCPVAFKLRGSSSE---------------EGFFKLPYRLVFAIATLNSVYIYD-TECVAPIAVLAGLHYAAITDITWSPNASYLALSSQDGYCTLVEFEDKELGEAVSISVG----------------------------------------------------------------------------------------------------------------------------KKPVDGEEKKHDLEKGDELMTETT------------------------------------------------PDESKKQAELEQNEESKQPLPSK----ITTDG-------------------KEKEHIMQKTDDEVMTETRHEEENQPLQSKVNTPVSN---------------------------------KPARKRITPMAIDP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Selaginella_moellendorffii_109484 -MIVEKPEWLRHEG-LQIFSVDFQ----PSGQRCATAGGDHKVRIWNTRP--LMKEGE-ADRGGEKLLATLCDHFGSVNCVRWSKSGLYVASGSDGSLVLIHEKRHGTGTVEFG----------SGEPANVENWKVCASLRG-----HTADVVDLAWSPDDSMLATCSLDNTVRIWKMPGGSSVAVLTGHSSLVKGVAWDPIGSFLASQSDDKTVMIWQTS--------------------------------------DWAAVHRAEGPWRKSVGSTFFRRLSWSPCGHFIITTHG------YENPSHTAQVLERG--------DWS-GTFNFVGHNAPVVAVRFNHSMFRKQPLPPPENNGEEELLQMDPKKVPKEMVPYNVVAMGSQDRNITVWT-TANPRPVFVGKHFFTQSVVDLSWSPDGYSLFCCSLDGTVASFHFEAKELGHIVSEKEMEEFRRNRYGD-------------------SRSRQESLAESPAQLFIEATAAAKKVGN---STTIVSNGNTTSNVSNTTVVTQTNKQVASTTLRAQEHEEAGTTTTVTTPKNGTLEKDQAAAQTPVKQREYRQQDGRRRIIPEALHTEDDGGRKDRESSAEKRKLSPVDASKSEAPSKRLLGSGGSGGGGGGGGVRERNGSGASKAIEVSSMERSLGLSSTTNTTVAINVTQASQLRGPDGVLSVQVRISDEESLDGP----AVAPICLEAKPVRVQDAAAGRGETG--ETDLVCSQGGEIRWRDRFAGKVTALTGNTNFWAVGCEDGSLQVYTMAGRRALPSMVVGSAAAFMDCTRG-WELLLLTRGGTMHVWDLRQSQCLLNESLLPLTLSS-------SATSSAKESGVMRIISARFSEAGAPLVVLANGHAFLFHTKMRSWLRIADDFFPSSSFVSTWPPSGDGELAGLQKGAATLGKTNFSWNRTLINEK------YQTRAHLEDQLAAALALKSAEEYKRHLISYTRFLTREADEVRLRELCEDLLGPLFVPDS-------------------------------EPCYDSQPTTSTWESYVLGMKKRELLKNEVLPAMASNRAVQRLLNEFLDMLSEYEDTQ----------------------------------------- Physcomitrella_patens_Phpat.001G056500.2.p --MKGATVQIAWHGSEPVLSLDFH----PHSGLLATAGADHDIKVVLHRH-IWSVHQKESGSPTVEFEADLCYHSKAVNVLRFSPSGQLLASGGDGGEILIWKP--------------------IERADKKPSWKVLKTLQL-----HVRDVLDLAWSPDSLSLMSGSVDNQCMIWDVVSGKVLQVLNDHQHFVQGVAWDPAGEFLTSISSDRTCRIYSRQSVPKSKKRKLAVVQNMFTCKQVLAKSDALPSKTNITIDADGRVAKASQLFHDETLPSFFRRLAWSPDSSFLVVPSGLHRIAHEAPSCNVSFIFSRS--------DLSRPCIHLPAPTKPVVAVRFCPVIFSLRENETE------------KGSSSGFALPYRLVFAVATLDSLYVYD-TQRSEPIVIFAGIHYAAITDIAWSADAQYVAVSSQDGYCSLLIFHGNELGTKLSSGDVPANIAKFLPE---------------------------------------------------------------------NLLGKPQESLPNSTELSQVSEPVGLMNEEQSSP----------IVICPRPLKHRRITPTALPATCSPIVQKQ---------------------------------------------IADQTSITVSDKKLQRITPIALTEDGPSSSGNCLDTETVHTPSSTQNSLSAVQAADAAETPDSSTCEASSPGAKKRLRINPIPILAGEGALNSGGNVIPRRRPTDCDQSASIAKFRSLESCLQEQGVAGPATVSTE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Arabidopsis_thaliana_CAF1BLb --MKGGTIQISWHDGKPVLTVDFH----PISGLLATAGADYDIKLWLI-----NSGQAEKKVPSVSYQSSLTYHGCAVNTIRFSPSGELLASGADGGELFIWK---------------------LHPSETNQSWKVHKSLSF-----HRKDVLDLQWSPDDAYLISGSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAWDPLAKYVASLSSDRTCRIYANK--PQTK-SKGVEKMN-YVCQHVIMKADQQR-------GDETKT-IKTHLFHDETLPSFFRRLSWSPDGSFLLIPAGSFKVSPTSEAVNATYVFSRK--------DLSRPALQLPGASKPVVVVRFCPVAFKLRGSSSE---------------EGFFKLPYRLVFAIATLNSVYIYD-TECVAPIAVLAGLHYAAITDITWSPNASYLALSSQDGYCTLVEFEDKELGEAVSISVG----------------------------------------------------------------------------------------------------------------------------KKPVDGEEKKHDLEKGDELMTETT------------------------------------------------PDESKKQAELEQNEESKQPLPSK----ITTDG-------------------KEKEHIMQKTDDEVMTETRHEEENQPLQSKVNTPVSN---------------------------------KPARKRITPMAIDP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Homo_sapiens_CAF1B --MKVITCEIAWHNKEPVYSLDFQHGTAGRIHRLASAGVDTNVRIWKVEKGPDGK-------AIVEFLSNLARHTKAVNVVRFSPTGEILASGGDDAVILLWKVNDNKEPEQIAFQ------DEDEAQLNKENWTVVKTLRG-----HLEDVYDICWATDGNLMASASVDNTAIIWDVSKGQKISIFNEHKSYVQGVTWDPLGQYVATLSCDRVLRVYSIQ-------KKRVAFNVSKMLSGIGAEGEA----------------RSYRMFHDDSMKSFFRRLSFTPDGSLLLTPAGCVESG--ENVMNTTYVFSRK--------NLKRPIAHLPCPGKATLAVRCCPVYFELRPVVE--------------TGVELMSLPYRLVFAVASEDSVLLYD-TQQSFPFGYVSNIHYHTLSDISWSSDGAFLAISSTDGYCSFVTFEKDELGIPLKEKPVLNMRT-----------------------------------------------------------------------------------------------------------------------PDTAKKTKSQTHRGSSPGPRPVEGTPA---------------------------------------------SRTQDPSSPGTTPPQARQAPAPTVIRDPPSITPAVKSPLPGPSEEKTLQPSSQNTKAHPSRRVTLNTLQAWSKTTPRRINLTPLKTDTPPSSVPTSVISTPSTEEIQSETPGDAQGSPPELKRPRLDENKGGTESLDP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1146; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1146; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 1146; END; BEGIN TREES; Title Histone_chaperone_CAF1B_Tree; LINK Taxa = Taxa; TRANSLATE [0] 1 Selaginella_moellendorffii_267866, [1] 2 Chlamydomonas_reinhardtii_Cre13.g575950.t1.2, [2] 3 Saccharomyces_cerevisiae_CAF1p60, [3] 4 Physcomitrella_patens_Phpat.001G056500.1.p, [4] 5 Arabidopsis_thaliana_CAF1BLa, [5] 6 Picea_abies_MA_6422g0020, [6] 7 Oryza_sativa_CAF1BL, [7] 8 Arabidopsis_thaliana_CAF1BLc, [8] 9 Selaginella_moellendorffii_109484, [9] 10 Physcomitrella_patens_Phpat.001G056500.2.p, [10] 11 Arabidopsis_thaliana_CAF1BLb, [11] 12 Homo_sapiens_CAF1B; TREE Imported_tree_1 = (((((((11,8)0.9770,5)1.0000,7)0.8040,6)0.9930,(4,10)1.0000)0.9980,(12,3)0.7340)1.0000,(2,(9,1)1.0000)1.0000); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1419511455090; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 8840962261171011620; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8392959985167996928; mqVersion 301; checksumv 0 3 1069180925 null getNumChars 1146 numChars 1146 getNumTaxa 12 numTaxa 12 short false bits 1048575 states 1048575 sumSquaresStatesOnly 6.3069266162764E13 sumSquares 6.3069266162764E13 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 184; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1304 690; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #8840962261171011620 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1251.1419510619534.2810414143093669181; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1120 618; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8392959985167996928 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 246; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1120 618; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;