#NEXUS [written Sat Dec 27 15:27:18 IST 2014 by Mesquite version 3.01 (build 658) at AmitSai/192.168.5.34] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=14; TAXLABELS Physcomitrella_patens_Phpat.027G005500.1.p Physcomitrella_patens_Phpat.016G064900.1.p Selaginella_moellendorffii_109484 Selaginella_moellendorffii_267866 Arabidopsis_thaliana_HIRALa Picea_abies_MA_44386g0010 Chlamydomonas_reinhardtii_Cre13.g575950.t1.2 Homo_sapiens_HIRA Oryza_sativa_HIRAL Physcomitrella_patens_Phpat.027G005500.2.p Saccharomyces_cerevisiae_HIRA1 Selaginella_moellendorffii_94452 Arabidopsis_thaliana_HIRALb Saccharomyces_cerevisiae_HIRA2 ; END; BEGIN CHARACTERS; TITLE Histone_chaperone_HIRA_matrix; DIMENSIONS NCHAR=1475; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX Physcomitrella_patens_Phpat.027G005500.1.p -MIVEKPTWLRHAG----LQIFSVDTQPNGLRFATAGGDH---KVRIWNMKPLA--------EKE-TDS--DTKLLATLRDHFGSVNCVRWAKCGQKIASGSDDQVVYIHEKRPGSG-TTEFGS-GEPPDVENWKVLLTLRG-HSADVVDLGWSPDD-TQLASCSLDNSIRIWQTSTG-ALLSVLTGHQSLVKGLTWDPIGSFLATQSDDKSVIIWRTSN-----WSMVKKVEGPWEKTVGSTFFRRLGWSPCGHFIATTHGFQ----NPSHTAPVLERGEWM-ASFDFVG-HNAPVVAVRFNHSMFRKVKKAPADGAVDVAGNG-AILGAANGTSSKT-KEPPPYNVIAIGSQDCCISVWTTGS-PRPVFIGKHFFQQSVVDLSWSPDGYTLFCCSLDGSVASFQFERKELGEKISDAEMEEFKKSRYGD------LRVRQATVAESPAQLMLEAAAAKQWGSGNASNANTIDSTKAVSQAENGAVTAEVPKKVLTKPPSAPAPEVPIKVPTKPPSAPALGADVRNGSLVPSVPLLTPRVNPSPVKQTEYRRADGRRR------------------------IIPEPLGPPRGDDVFGN------GALHSTIKNDSVTITADARKEDLGSIGLKSSESAFKRKLPEDYVKPDMPPAKRSNGSALNEALAPAACCSSAAVVAIGVGNEGPPNIASGGVQADVVVPAEKMTTPEGVLSIRIREPEGAGGEDSKNRAPIYLEARPADCTSNLGSVLGSTAPISIRESSAKAKIICSQGGEVRWCDYLVSMPTALAGN--SNFWAVACGDGSLQIYTKAGRRAQPSLMLGSAAAFMDCDENWKLMVVTR-NGSLYLWDLQESRRLLHESLGPLLNS---------------------------------TSANSMLASNGTMKLVSARLSKAGAPLVVLANRHAFIFNSSMCCWLRVAD----------DTFPASNFVSAWP--DADDGELANLQAGVAVAAGPSFLWNRMSLSEEKWQTRVH------------------------------LEVQMSSALALKSASEYRRCLVAYARCLSKESDEARLRELCEELLG-PVGSVG--------------------------------------------------------KLQLSKPDILGMSKRELLKGIVLPAMASNRAIQRLLNEFVDLVTECEAAEKA----------LEPGGSIL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Physcomitrella_patens_Phpat.016G064900.1.p -MIVEKPTWLRHAG----LQIFSVDTQPNGLRFATAGGDH---KVRIWNMRPLA--------EKE-TDS--DTKLLATLRDHFGSVNCVRWAKCGQKIASGSDDQVVLIHEKRPGSG-TTEFGS-GEPPDVENWKVLLTLRG-HSADVVDLGWSPDD-TQLASCSLDNTIRVWQASTG-AVLAVLTGHQSLVKGLTWDPIGSFLATQSDDKSVIIWRTSN-----WSMVKKVEGPWEKTVGSTFFRRLGWSPCGHFIATTHGFQ----NPSHTAPVLERGEWM-ASFDFVG-HNAPVVAVRFNHSMFRKVKKTSVDGTVDGVGNGAASWGGANGTSSKT-KELAPYNVIAIGSQDCCISVWTTGS-PRPVFIGKHFFQQSVVDLSWSPDGYTLFCCSLDGSVASFQFERKELGEKISDAEMEEFKKSRYGD------LRVRQATVAESPAQLMLEAAAAKQWGSGNAPNRDNTDSTKAVPKVANGTVDAEMPKKVPTKPPPAPSTEAHTKVLTKPLPAPVLGIDGRNGSLVPSV---SPPVAPSSVKQTEYRRADGRRR------------------------IIPEPLGPPRGEDGFGN------GALHSSVKYDSFTTTADVRKEDLGGIANIAPETASKRRLPEDYIKPDVPPAKRSNGIALDEALAPAARSSSAAVVAIGLGSERPSNIA-GGSQLDMVVPVERMTTPEGVLSIRIRMPEGVSGEDSKVQAPICLEARPAECTNNLGSALGSAAPTSIRESSAKAKIICSQDGEVRWCDYLVSMPTALSGN--SNFWAVACGDGSLQIYTMAGRRAQPSIMLGSAAAFMDCDENWKLMVVTR-NGLLHLWDLQESKRLLHESLGPLLNS---------------------------------TSANSTLASNGTMKLVSARLSKAGAPLIVLVNRHAFIFNIGMCCWLRVAD----------DSFPASNFVSTWP--DADNGELANLQAGVARAAGPSFLWNRMSLSEEKWQTRVH------------------------------LEVQMSSALALKSASEYSRCLVAYVRCLTKESDEARLRELCEELLG-PVGPVG--------------------------------------------------------KLQSWKPDILGLSKRELLKEFVLPAMAANRAIQRLLNEFIDLVTECEAAEKA----------SQSGGSIL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Selaginella_moellendorffii_109484 -MIVEKPEWLRHEG----LQIFSVDFQPSGQRCATAGGDH---KVRIWNTRPLM--------KEG-EADRGGEKLLATLCDHFGSVNCVRWSKSGLYVASGSDGSLVLIHEKRHGTG-TVEFGS-GEPANVENWKVCASLRG-HTADVVDLAWSPDD-SMLATCSLDNTVRIWKMPGG-SSVAVLTGHSSLVKGVAWDPIGSFLASQSDDKTVMIWQTSD-----WAAVHRAEGPWRKSVGSTFFRRLSWSPCGHFIITTHGYE----NPSHTAQVLERGDWS-GTFNFVG-HNAPVVAVRFNHSMFRKQPLPPPE------NNGEEELLQMD-PKKVP-KEMVPYNVVAMGSQDRNITVWTTAN-PRPVFVGKHFFTQSVVDLSWSPDGYSLFCCSLDGTVASFHFEAKELGHIVSEKEMEEFRRNRYGD------SRSRQESLAESPAQLFIEATAAAKK-VGNSTT--IVSNGNTTSNVSNTTVVTQTNKQVASTTLRAQEHEEAGTTTTVTTPKNGTLEK-------------DQAAAQTPVKQREYRQQDGRRR------------------------IIPE--------------------ALHTEDDGGRKDRESSAEKRKLSPVDASKSEAPSKRLL---------GSGGSGGGGGGGGVRERNGSGASKAIEVSSMERSLGLSSTTNTTVAINVTQASQLRGPDGVLSVQVRISDEES-LDGPAVAPICLEAKPVRVQDAAAG----------RGETGETDLVCSQGGEIRWRDRFAGKVTALTGN--TNFWAVGCEDGSLQVYTMAGRRALPSMVVGSAAAFMDCTRGWELLLLTR-GGTMHVWDLRQSQCLLNESLLPLTLS---------------------------------SSATSSAKESGVMRIISARFSEAGAPLVVLANGHAFLFHTKMRSWLRIAD----------DFFPSSSFVSTWP--PSGDGELAGLQKGAATLGKTNFSWNRTLIN-EKYQTRAH------------------------------LEDQLAAALALKSAEEYKRHLISYTRFLTREADEVRLRELCEDLLG-PLFVPDSEPCYDS-----------------------------------------------QPTTSTWESYVLGMKKRELLKNEVLPAMASNRAVQRLLNEFLDMLSEYEDTQ-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Selaginella_moellendorffii_267866 -MIVEKPEWLRHEG----LQIFSVDFQPSGQRCATAGGDH---KVRIWNTRPLM--------KEG-EADRGGEKLLATLCDHFGSVNCVRWSKSGLYVASGSDGSLVLIHEKRHGTG-TVEFGS-GEPANVENWKVCASLRG-HTADVVDLAWSPDD-SMLATCSLDNTVRIWKMPGG-SSVAVLTGHSSLVKGVAWDPIGSFLASQSDDKTVMIWQTSD-----WAAVHRAEGPWRKSVGSTFFRRLSWSPCGHFIITTHGYE----NPSHTAQVLERGDWS-GTFNFVG-HNAPVVAVRFNHSMFRKQPLPPPE------NNGEEELLQMD-PKKVP-KEMVPYNVVAMGSQDRNITVWTTAN-PRPVFVGKHFFTQSVVDLSWSPDGYSLFCCSLDGTVASFHFEAKELGHIVSEKEMEEFRRNRYGD------SRSRQESLAESPAQLFIEATAAAKK-VGNSTT--IVSN------------------------------DQAAAVAVAAAPLP------------------PPPAKQTPVKQREYRQQDGRRR------------------------IIPE--------------------ALHTEDD------------------DCWEAAAVA--------------------------------VVAELAVFVSGMAPARAKPSK------FQAWRASQLRGPDGVLSVQVRIPDEES-LDGPAVAPICLEAKPVRVQDAAAG----------RGETGETDLVCSQGGEIRWRDRFAGKVTALTGN--TNFWAVGCEDGSLQVYTMAGRRALPSMVVGSAAAFMDCTRGWELLLLTR-GGTMHVWDLRQSQCLLNESLLSLTLS---------------------------------SSATSSAKENGVMRIISARFSEAGAPLVVLANGHAFLFHSKMRSWLRIAD----------DFFPSSSFVSTWP--PSGDGELAGLQKGAATLGKTNFSWNRTLIN-EKYQTRAH------------------------------LEDQLAAALALKSAEEYKRHLISYTRFLTREADEVRLRELCEDLLG-PLFVPDSEPCYDS-----------------------------------------------QPTTSTWESYVLGMKKRELLKNEVLPAMASNRAVQRLLNEFLDMLSEYEDTQ-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Arabidopsis_thaliana_HIRALa -MIAEKPFWVKHEG----LQIFSIDVQPNGERFATGGGDH---KVRIWNMKSVD--------KDL-QNIDTKERLLATLRDHFGSVNCVRWAKNSRYVASGSDDQVIQIHERKPGSG-TTEFGS-GEAPDVENWKAVMTLRG-HTADVVDLNWSPDD-SMLASGSLDNTVHIWNMRTG-MCTTVLRGHLSLVKGVTWDPIGSFIASQSDDKTVIIWRTSD-----WGMAHRTDGHWAKSLGSTFFRRLGWSPCGHFLTTTHGFQ----KPKHSAPVLERGEWS-VAYDFLG-HSAPIIVVRFNHSMFKRIPSSTH------ETKQV---GWSNGTSKSGEKDLQSYNVIAMGSQDRTITVWTTGS-ARPLFVAKHFFGQSVVDLSWSPDGYSLFACSLDGTVAMIHFDPKELGVRLTDTELDELKKSRYGD------VRGRQANLVESPAQLLLETASTKQAGSKRAASDVQQNQVTTKPSVSVESTAK-RRKSQ------VDDRNKAAESTGQTLNKASTL-----------------NRVSSPVNQKVYRRPDGRKR------------------------IIPEAVGVPQQENNI---------MINGESHNFLPASAAAPAKGDSGDFP-VEISNRDLSGKE-----------IVCRNPDLKERSRITARATITESLVIEKVPGTSGRDGVLNVEQSVGIKE----SSSTDLLIRVFDW-----KDGEAAPPVCLEACPREH-ALDTVGAVS------TSMVKETEISCKKSGETLWSDRIMGRVTVLAGN--PNFWAAGCEDGSLQVYTKCGRRAMPTMMMGSAATFIDCDDSWKLLLVTR-KGSLYVWDLFNRKCVLHDSLSSLVSSDVNLSSTVKV------------------ELLSWYEDSSVIDLDCTIKVISVKLSKSGSPLVVLATRHAFLFDTSLMCWLRVAD----------DCFPASNFSSSWNLGSAPCGELAGLQVDVRKYMARKPGWN-RIT-DDGTQTRAH------------------------------LESQLASSLALESPNEYRQCLLAYVRFLAREADESRLREVCESFLGPPTGMAEAASSD---------------------------------------------------TNLSWDPYVLGVKKHKLLRNDILPAMASNRKVQRLLNEFIDLLSEYEDVETADPAPKGSTPTMNCGGVPSSLDQIGSDPPAMTATTPMTIDNDKPVSLENPAALDIGVCEKTGSEDRDKQDQNSRDSGS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Picea_abies_MA_44386g0010 ---------------------------------------M---KVRIWNTKPVG--------KEV-DADQTAHTLLATIRDHFGSVNCVRWAKHGRYVASGSDDKVILIHEKKPGSG-TTEFGS-GEPPDVENWKVVMTLRG-HTADVVDLNWSPDD-SILASCSLDNTVQLWNMSDA-SSIAVLRGHTSLVKGISWDPIGSFLASQSDDKSVIIWRTSD-----WSLEHRTEGHWGKSVGSTFFRRLGWSPCGHFITTTHGFQ----KPSHSAPVLERGDWS-ATFDFLG-HNAPVVAVKFNNFMFRKHQLNGSEL---VDHEQVDTSGRANGAVKLVSKDLSPYNVIAMGSQDCSITVWTTAS-PRPIFVGKHFFSQSVVDLSWSPDGYSLFCCSLDGTVATFHFENKELGDKISDTELDEFKRSRYGD------VRGRQKNLAESPAQLFLEAVAAKQSGSKKAITGSQRGNLSGKPYTNSGNSIGGQLPTKSSDIQVLEVGKKTSGSILGGVNKTAS------------------LKATSPVKQREYRRPDGRKR------------------------IIPEAVGVPVQQDIPNGTHGAMLELISPNSGQRKDDQGVASRDGTTVEVGQKRPLPDGAKNYP-----------NKRCHCATEDPVGVTARASIAEGLTIEMGQSSADRDARGNLTNAELVTVLNSQNPKGILSIIVYDT-----DRESENTPTCLEARPSIN---NTIETTN------TAESKETEVICTKEAVILWRDKLAGKVTVLAGN--SNFWAVGCEDGSLQVYTKCGRRALPTMMVGSAPTFIDCDDSWKLLLVTQ-RGSIYLWDLFRWKCLLHDSLAPLVTS-----------------------------------ATGSFKGSGVIKVTSAKFSRSGAPLVVLATCHAFLFHMGMKCWLRVAD----------DCFPASNFTSSWPVSSLQDGELAALQADAGKFAMRNISWS-STSSEDKMQTRAH------------------------------LEAQIASAMALKSPIEYRQCLLSYTRCLAREADELRLREVCEGLLGPPAGMITSVPSDSIATSWDPHILVSHAFYSPSFWEADELRLREVCEGLLGPPAGMITSVPSDSIATSWDPHILGMKKHDLLRDDVLPALASNRKVQRLLNEFLDLLSEYKTREPS-----LHNEQVKVSDAYTGL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Chlamydomonas_reinhardtii_Cre13.g575950.t1.2 MPFFDKPEWIQHAGG---VSIMGVDLDPSGVRMATCGSDN---RIRIWAMRPVL--------SEVAEQDPAVPKQLAVLCDALTPINAIRFAPSSQLLAAGTDDSEGLVYELREGRG-SAVFGS-GESANIENWRLRIKLRG-HASNVLDVAWAPDS-RRLATCSVDNKVKVWDTTNG-HCLRTLEGHVGHVKGVAWDPFDFFLASQGD-REAIVWRLED-----GSQVAIIREPFEKAPIVSFGLRPGWSPDGQTLALPNGYD----KGMHTVPLIKRNSWVPGEFCLVG-HKGPVTAIRYNPHLYTP--------------------AHKPGAAPTSPDDEAAGSIITAGSTDKTFSIWAPCAGDEPLAVARGFFGGMVNDVAWSADGRVMVVAAYDGSVATALFADGELGKRVPQAEVEALLAQLYGD------PALRAGAAGREGGGGMGLGGRGGHSGLAAAPELMALEARARAEVEREERLNSRLRADGAAAAAAGAGAVVGAGTSGAAGPAAAG-----------------AAGLRPPLGAATGLARAAMPP------------------------TAPAAARVPLAVTQN---------GVGSAGRGAGVGSNSPAKAGAGGARGGPAGTSGRDADQPPAKRIAVQPVGSAATAMGARAGAATAATTATAPPGVAAGAGAGAGGHGAGGGSAAASPVLVPVEALHAHFSFLIHAQ-----PGSTGEGQVELQALNTGR---------------DARGRPAGELLCLVGGQRCWGDSVQGAVVALAGS--SRLAAAATSNGDLMIYSSAGRRLFPPIRLGWPAAFLTVAPGSSLLLALLTDGSLKLWDFGAGECLLESSVAPLLLPPG--------------------------AGVPGLAAAVAAAQPPVLKVTAVRITASGAPLVVLSNAHAYVHHGGLRTWVRVAD----------DAFPASAFTTNLT--SAATGELSKLQAAVAQRRHPADVMTTSALHAARPAAAARSEQA-------------------------VLEHNLASAAALQSPAEWRLWLITYVRRLAADEDESRLRDLISELLGPLRWTPATHAAAAAGSSRAG-----------------GANAPAAAAAAAATSSSWEPALGSSVSGGRWAPVFLGFDKRRLLREVVLKEVARNRSYQQLVAEVLEQLKQVDAAAAAAAAVQQPHARGQADGVNAPAGDGAAAPAGAASSQPMVMG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Homo_sapiens_HIRA -MKLLKPTWVNHNG----KPIFSVDIHPDGTKFATGGQGQDSGKVVIWNMSPVL--------QEDDEKDENIPKMLCQMDNHLACVNCVRWSNSGMYLASGGDDKLIMVWKRATYIGPSTVFGSSGKLANVEQWRCVSILRN-HSGDVMDVAWSPHD-AWLASCSVDNTVVIWNAVKFPEILATLRGHSGLVKGLTWDPVGKYIASQADDRSLKVWRTLD-----WQLETSITKPFDECGGTTHVLRLSWSPDGHYLVSAHAMN----NSGPTAQIIEREGWK-TNMDFVG-HRKAVTVVKFNPKIFKKKQKNGS-----------------------SAKPSCPYCCCAVGSKDRSLSVWLTCL-KRPLVVIHELFDKSIMDISWTLNGLGILVCSMDGSVAFLDFSQDELGDPLSEEEKSRIHQSTYGKSLAIMTEAQLSTAVIENPEMLKYQRRQQQQQLDQKSAATREMGSATSVAGVVNGESLEDIRKNLLKKQVETRTADGRRRITPLCIAQLDTGDFSTAFFNSIPLSGSLAGTMLSSHSSPQLLPLDSSTPNSFGASKPCTEPVVAASARPAGDSVNKDSMNATSTPAALSPSVLTTPSKIEPMKAFDSRFTERSKATPGAPALTSMTPTAVERLKEQNLVKELRPRDLLESSSDSDEKVPLAKASSLSKRKLELEVETVEKKKKGRPRKDSRLMPVSLSVQSPAALTAEKEAMCLSAPALALKLPIPSPQRAFTLQVSSDPSMYIEVENEVTVVGGVKLSRLKCNREGK-EWETVLTSRILTAAGS--CDVVCVACEKRMLSVFSTCGRRLLSPILLPSPISTLHCTGSYVMALTAA--ATLSVWDVHRQVVVVKEESLHSILAG------------------------------------------SDMTVSQILLTQHGIPVMNLSDGKAYCFNPSLSTWNLVSD----------KQDSLAQCADFRSSLPSQDAMLCSGPLAIIQGRTSNSGRQAARLFSVPHVVQQETTLA-------------------------YLENQVAAALTLQSSHEYRHWLLVYARYLVNEGFEYRLREICKDLLGPVHYSTG----------------------------------------------------------SQWESTVVGLRKRELLK-ELLPVIGQNLRFQRLFTECQEQLDILRDK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Oryza_sativa_HIRAL -MITEKPSWIRHEG----LQIFSIDIQPGGIRFATGGGDQ---KIRIWSMKSVA--------KDN-DSDDSSQRLLATIRDHFGTVNCVRWAHHGRYLASGSDDQVIQIHERKAGTG-TSEFGS-GEPPDVENWKVVMTLRG-HTADVVDLNWSPDD-STLASGSLDNTVHIWSMANG-ICTAVLRGHSSLVKGVTWDPIGSFIASQSDDKTVIIWRTSD-----WSLAHRTEGHWSKSLGSTFFRRLAWSPCGHFITTTHGFQ----KPRHSAPVLERGEWS-ATFDFLG-HNAPVVVVKFNHSMFRKHLSSGQ------DAKAAPA-GWANGASKASSKEHQPYNVIAIGSQDRTITVWTTAS-ARPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGSVATFHFEAKELGYRLRDAELDELKKNRYGD------VRGRQSNIAESPAQLLLEEASAKQSASKKVSS-VQQFQSPPKVSTDAPNPST-SVPNQKAPEALPEDEKKTAGSTADDINKAP--------------------RLSSPVKQREYRRPDGRKR------------------------IIPEAVGFPSNQD------------MSNRSQNQGVDFSSLDQRMILGENG-TRPS-YSASGN--------------CNNCGVRERSGITARTNISESLVIQKASAGAGSDGRLSIEQSGSVVPG-SLASCSSLSIHVFNK-----KDNEDSLPVRLEAKPVERSAGDMIGLGG------AFSTKETEITCTRGTETLWSDRISAKVTVLAGN--ANFWAVGCEDGCLQVYTKCGRRAMPAMMMGSAAVFIDCDECWKLLLVTR-RGLMYIWDLYTRTCVLHDSLASLVTS----------------------------------PDEAAGKDTGTVKVISAKFSRCGSPLVVLASRHAFLYDTSLKCWLRIAD----------DCFPASNFASSF--SSTQGGELGKLQIDIGKFMARKPIWS-RVT-DDGVQTRSH------------------------------LETQLAASLALKSPQEYRQCLLSYIRFLAREADESRLREVCESFLGPPMGMVDAASSADL-------------------------------------------------KNPSWDPDVLGMKKHKLLREDILPSMATNRKVQRLLNEFMDLLSEYEAAETN-------VEQMDVTPTPP-------PPPPAAATE----GNNNGAS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Physcomitrella_patens_Phpat.027G005500.2.p -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MVKKVEGPWEKTVGSTFFRRLGWSPCGHFIATTHGFQ----NPSHTAPVLERGEWM-ASFDFVG-HNAPVVAVRFNHSMFRKVKKAPADGAVDVAGNG-AILGAANGTSSKT-KEPPPYNVIAIGSQDCCISVWTTGS-PRPVFIGKHFFQQSVVDLSWSPDGYTLFCCSLDGSVASFQFERKELGEKISDAEMEEFKKSRYGD------LRVRQATVAESPAQLMLEAAAAKQWGSGNASNANTIDSTKAVSQAENGAVTAEVPKKVLTKPPSAPAPEVPIKVPTKPPSAPALGADVRNGSLVPSVPLLTPRVNPSPVKQTEYRRADGRRR------------------------IIPEPLGPPRGDDVFGN------GALHSTIKNDSVTITADARKEDLGSIGLKSSESAFKRKLPEDYVKPDMPPAKRSNGSALNEALAPAACCSSAAVVAIGVGNEGPPNIASGGVQADVVVPAEKMTTPEGVLSIRIREPEGAGGEDSKNRAPIYLEARPADCTSNLGSVLGSTAPISIRESSAKAKIICSQGGEVRWCDYLVSMPTALAGN--SNFWAVACGDGSLQIYTKAGRRAQPSLMLGSAAAFMDCDENWKLMVVTR-NGSLYLWDLQESRRLLHESLGPLLNS---------------------------------TSANSMLASNGTMKLVSARLSKAGAPLVVLANRHAFIFNSSMCCWLRVAD----------DTFPASNFVSAWP--DADDGELANLQAGVAVAAGPSFLWNRMSLSEEKWQTRVH------------------------------LEVQMSSALALKSASEYRRCLVAYARCLSKESDEARLRELCEELLG-PVGSVG--------------------------------------------------------KLQLSKPDILGMSKRELLKGIVLPAMASNRAIQRLLNEFVDLVTECEAAEKA----------LEPGGSIL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Saccharomyces_cerevisiae_HIRA1 -MKVVKFPWLAHREESRKYEIYTVDVSHDGKRLATGGLDG---KIRIWSIDSILRCMELESLTPEIPLPQDLQMPLCSMSRHTGSITCVKFSPDGKYLASGSDDRILLIWALDEEQSSQPAFGS---EHEREHWTVRKRLVA-HDNDIQDICWAPDS-SILVTVGLDRSVIVWNGSTF-EKLKRFDVHQSLVKGVVFDPANKYFATTSDDRTMKIFRYHKTGDISFTIEHIITEPFKESPLTTYFRRPSWSPDGQHIAVPNATN----GPVSSVAIVNRGTWD-TNVSLIG-HDAPTEVARFNPRLFERNAGVKQK-----KDDDPENALVGQNDDKVHHFDKNIDSVVATAGQDKSLAVWSTSR-PRPILVAFDIANKSITDMSWNPDGSLLFVASLDSSITLFKFENNELGKPIPLEKNMEQLYRYGVDKDSLDFPESINQLLLEDQTKSFKHTKISTSKLGENHPTLATNSASNQKDNNDASVSRSEHINILIPKRKKDAILNKAVTLKSGKKRVAPTLIS---------------TSSSSPFSNGIKKPTLDSKR------------------------IENNVKSSTKTINSKNT-------LLNVPEGVEKKISISSFPLPRLGIHSLIMGTKERSAWKIS---------NSELENDDADNAGGKGSDGTSNSIDDIAVLSEEENDFHRMTLNAKLTQEKIWSEEPTTRCLLQSDVIPDTDVVVLEGGSLDDIAVLEIRNGVERSIQFDS-----EALLDNPTRILGYQGGKRTIETFIPEVIICAIGSKDCKCWCLASANGSIYILSYNGQQRIPKICLGHKVIKMVTSSKYLLVLTER--GLFFAWDLLDLKLVLRNVPILPILNGQ-------------------------------PIHGNKVRINKVIKCFRLDGSSCDLLLEVGDPKNVYKWTKDLGCWSLYK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Selaginella_moellendorffii_94452 ----------------------------------------------MAETRAIPP-------HCEDPSLVISYPAHRGGRMHFSGVSSICFRPYMKHLVSGGADGNVLMWGLQSCHE------------SRRQIRRPYCLQG-HKAPICSVAVSPLD-TVVASGSKDKTVRLWIPRVY-AKSTVIKGHSGTVRSIAFNPSGEYLLSASDDKCMKVWDVET-----------EKFAFALLGHLNWVRSAEFNNDGRSIVSGS--------DDKTIRLWDVESRQ-CIHQYID-ILGMVRSARFHP----------------------------------------EGKCIASCGTDECIQIWDTRS--KRLVQHYAADAGTVNTVSFHPSGDYLLSTCDDGGLRLWDLREGQLLYMLKGHEGSTNCAEFCKS------------------GDFFASGSADEQVMNFKT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Arabidopsis_thaliana_HIRALb -MIAEKPFWVKHEG----LQIFSIDVQPNGERFATGGGDH---KVRIWNMKSVD--------KDL-QNIDTKERLLATLRDHFGSVNCVRWAKNSRYVASGSDDQVIQIHERKPGSG-TTEFGS-GEAPDVENWKAVMTLRG-HTADVVDLNWSPDD-SMLASGSLDNTVHIWNMRTG-MCTTVLRGHLSLVKGVTWDPIGSFIASQSDDKTVIIWRTSD-----WGMAHRTDGHWAKSLGSTFFRRLGWSPCGHFLTTTHGFQ----KPKHSAPVLERGEWS-VAYDFLG-HSAPIIVVRFNHSMFKRIPSSTH------ETKQV---GWSNGTSKSGEKDLQSYNVIAMGSQDRTITVWTTGS-ARPLFVAKHFFGQSVVDLSWSPDGYSLFACSLDGTVAMIHFDPKELGVRLTDTELDELKKSRYGD------VRGRQANLVESPAQLLLETASTKQAGSKRAASDVQQNQVTTKPSVSVESTAK-RRKSQ------VDDRNKAAESTGQTLNKASTL-----------------NRVSSPVNQKVYRRPDGRKR------------------------IIPEAVGVPQQENNI---------MINGESHNFLPASAAAPAKGDSGDFP-VEISNRDLSGKE-----------IVCRNPDLKERSRITARATITESLVIEKVPGTSGRDGVLNVEQSVGIKE----SSSTDLLIRVFDW-----KDGEAAPPVCLEACPREH-ALDTVGAVS------TSMVKETEISCKKSGETLWSDRIMGRVTVLAGN--PNFWAAGCEDGSLQVYTKCGRRAMPTMMMGSAATFIDCDDSWKLLLVTR-KGSLYVWDLFNRKCVLHDSLSSLVSSDVNLSSTVKVKRMKNWYLLIFLVGDLVVELLSWYEDSSVIDLDCTIKVISVKLSKSGSPLVVLATRHAFLFDTSLMCWLRVAD----------DCFPASNFSSSWNLGSAPCGELAGLQVDVRKYMARKPGWN-RIT-DDGTQTRAH------------------------------LESQLASSLALESPNEYRQCLLAYVRFLAREADESRLREVCESFLGPPTGMAEAASSD---------------------------------------------------TNLSWDPYVLGVKKHKLLRNDILPAMASNRKVQRLLNEFIDLLSEYEDVETADPAPKGSTPTMNCGGVPSSLDQIGSDPPAMTATTPMTIDNDKPVSLENPAALDIGVCEKTGSEDRDKQDQNSRDSGS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Saccharomyces_cerevisiae_HIRA2 -MRLLKYPLDIHNEQVN-------ALAALGPYIILAGSGG---HVMAWRQQQLV--------------DTAFDRVMIKDLKPEVSFQVDQDTTGDIFFITGDLETLYIGSEHRLWGYSGWLCRDTNNINSVEKMNSKLLFECKSPSTITDVKYDINLGILFVLLSNENKILLFRHKTFDKLSEITIDKASKPITGIIDPTGQTFTVMTSDRSILVYQINK-----TGTHKLINKLTQHVQMYPLHYRISMSPQADILPVINSVKGVPNNATSCTALLDRNNNYKVTKTLVTPSSNGCRVLVYSPAFYEKPNLKKG-------------------------TSTRYNLIATSGSTDGTILVWNTKR-MKPLFNALQVSSTAINDMSWSQDGFTLFAISNDATLYTFAFQEKDLGVALPQTEIKSLQEVNKKLP-------KLEEPLAEQIPKSFPENIKLEESASAAPIPNDIGRSAVGKKPTKKKTANNQTNGIKTIQSTSMEFNTPSYTVPRDLKRKPKE-------------------ATPSNIAPGSKKQKKELQP--------------------------------------------------------------------------------------------------------------------IDFLDTGLLLPNTSFSRIRLATPKIRSTFKYSPINNPNLILDVKNGSGNEQRPTIVKLTSKVLDQ------------------------------------DQVLFQDFIPKLITICTAG--DTFWSFCSEDGSIYIYSDSGRKLMAPLVLGVSISFLEACGTYLLCLTSI--GELYCWNIEQKKLAFPTNTIYPLLNPS--------------------------------LRYSDDILTRAENITLCSITKKGVPLVTLSNGDGYLFDKNMETWLLVSDGWWAYGSQYWDTTNTTGLSSSKANTDSFNGSESNINEIVSDIKNDNQSIINFLECKTNDELNRKGRIKNLQRFARTILMKEGFENMEEIVTLSHLENKILISIRLEEPEEFSKLMMVYCIRLSELGYMDRLNDVFQWLYDDLPISGTG-------------------------------------------------------------SAFADKDFKRNLLKKILIACGDIRQVQRVTTRYAKEMNIIS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1475; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1475; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 1475; END; BEGIN TREES; Title Histone_chaperone_HIRA_tree; LINK Taxa = Taxa; TRANSLATE [0] 1 Physcomitrella_patens_Phpat.027G005500.1.p, [1] 2 Physcomitrella_patens_Phpat.016G064900.1.p, [2] 3 Selaginella_moellendorffii_109484, [3] 4 Selaginella_moellendorffii_267866, [4] 5 Arabidopsis_thaliana_HIRALa, [5] 6 Picea_abies_MA_44386g0010, [6] 7 Chlamydomonas_reinhardtii_Cre13.g575950.t1.2, [7] 8 Homo_sapiens_HIRA, [8] 9 Oryza_sativa_HIRAL, [9] 10 Physcomitrella_patens_Phpat.027G005500.2.p, [10] 11 Saccharomyces_cerevisiae_HIRA1, [11] 12 Selaginella_moellendorffii_94452, [12] 13 Arabidopsis_thaliana_HIRALb, [13] 14 Saccharomyces_cerevisiae_HIRA2; TREE Imported_tree_1 = ((((((((((5:0.0,13:0.0)1.0000:0.15262269,9:0.05886931)0.8570:0.11305327,6:0.02686219)0.6570:0.08105292,(1:0.0,(2:0.0,10:0.0)0.3040:0.0)1.0000:0.13529038)0.2890:0.05877507,(3:0.0,4:0.0)1.0000:0.11843963)0.9910:0.42039781,8:0.72739735)0.7260:0.2715154,11:0.55492149)0.4950:0.18291278,14:1.38453562)0.3120:0.20708715,7:0.56596491)0.0000:0.37077202,12:1.96239479); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1419674239067; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 2981183050107495812; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 5662002050937204057; mqVersion 301; checksumv 0 3 333993167 null getNumChars 1475 numChars 1475 getNumTaxa 14 numTaxa 14 short false bits 1048575 states 1048575 sumSquaresStatesOnly 9.3190145942809E13 sumSquares 9.3190145942809E13 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 184; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1304 690; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #2981183050107495812 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlockInt 0; toggleUseWeights off; endTell; setAssignedID 1589.1419513344699.8035517906184826408; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1120 618; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 0; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; makeTreeWindow #2981183050107495812 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1611.1419674223701.3982314117475485748; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1120 618; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #5662002050937204057 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 179; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1120 618; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;