#NEXUS [written Thu Jan 08 11:31:40 EST 2015 by Mesquite version 2.75 (build 564) at safs-FFKYC2S/10.1.128.119] BEGIN TAXA; TITLE 'COI taxa 8-1-15'; DIMENSIONS NTAX=14; TAXLABELS Py._ramosum_UQ6053 Py._ramosum_UQ6207 Py._ramosum_UQ6214 Py._ramosum_UQ6020 Py._ramosum_UQ6208 Py._ramosum_UQ6209 Py._ramosum_UQ6210 Py._ramosum_UQ6211 Py._ramosum_UQ6212 Py._ramosum_UQ6213 Py._zeae_HQ708452.1 P._irregulare_GU071876.1 Ph._cinnamomi_HQ708267.1 P._myriotylum_HQ708745.1 ; END; BEGIN CHARACTERS; TITLE 'COI matrix 8-1-15'; DIMENSIONS NCHAR=743; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX Py._ramosum_UQ6053 ----GGCTTTTTTCAACAAATCATAAAGATATAGGTACATTATATATAATTTTTGGTGCT Py._ramosum_UQ6207 -----------TTCAACAAATCATAAAGATATAGGTACATTATATATAATTTTTGGTGCT Py._ramosum_UQ6214 AGATGGCTTTTTTCAACAAATCATAAAGATATAGGTACATTATATATAATTTTTGGTGCT Py._ramosum_UQ6020 ----GGCTTTTTTCAACAAATCATAAAGATATAGGTACATTATATATAATTTTTGGTGCT Py._ramosum_UQ6208 -----------TTCAACAAATCATAAAGATATAGGTACATTATATATAATTTTTGGTGCT Py._ramosum_UQ6209 -----------TTCAACAAATCATAAAGATATAGGTACATTATATATAATTTTTGGTGCT Py._ramosum_UQ6210 AGATGGCTTTTTTCAACAAATCATAAAGATATAGGTACATTATATATAATTTTTGGTGCT Py._ramosum_UQ6211 AGATGGCTTTTTTCAACAAATCATAAAGATATAGGTACATTATATATAATTTTTGGTGCT Py._ramosum_UQ6212 ------CTTTTTTCAACAAATCATAAAGATATAGGTACATTATATATAATTTTTGGTGCT Py._ramosum_UQ6213 AGATGGCTTTTTTCAACAAATCATAAAGATATAGGTACATTATATATAATTTTTGGTGCT Py._zeae_HQ708452.1 ------------------AATCATAAAGATATTGGTACATTATATATAATTTTTGGTACT P._irregulare_GU071876.1 ------CTTTTTTCAACAAATCATAAAGACATAGGTACTTTATATTTAATTTTTGGTGCT Ph._cinnamomi_HQ708267.1 ------------------AATCATAAAGATATTGGAACTTTATATTTAATTTTTAGTGCA P._myriotylum_HQ708745.1 ------------------AATCACAAAGATATAGGTACATTATACTTAATTTTTGGTGCC Py._ramosum_UQ6053 TTTGCAGGTCTTATTGGTACAACTTTTTCTCTTCTTATTAGAATGGAATTAGCACAACCA Py._ramosum_UQ6207 TTTGCAGGTCTTATTGGTACAACTTTTTCTCTTCTTATTAGAATGGAATTAGCACAACCA Py._ramosum_UQ6214 TTTGCAGGTCTTATTGGTACAACTTTTTCTCTTCTTATTAGAATGGAATTAGCACAACCA Py._ramosum_UQ6020 TTTGCAGGTCTTATTGGTACAACTTTTTCTCTTCTTATTAGAATGGAATTAGCACAACCA Py._ramosum_UQ6208 TTTGCAGGTCTTATTGGTACAACTTTTTCTCTTCTTATTAGAATGGAATTAGCACAACCA Py._ramosum_UQ6209 TTTGCAGGTCTTATTGGTACAACTTTTTCTCTTCTTATTAGAATGGAATTAGCACAACCA Py._ramosum_UQ6210 TTTGCAGGTCTTATTGGTACAACTTTTTCTCTTCTTATTAGAATGGAATTAGCACAACCA Py._ramosum_UQ6211 TTTGCAGGTCTTATTGGTACAACTTTTTCTCTTCTTATTAGAATGGAATTAGCACAACCA Py._ramosum_UQ6212 TTTGCAGGTCTTATTGGTACAACTTTTTCTCTTCTTATTAGAATGGAATTAGCACAACCA Py._ramosum_UQ6213 TTTGCAGGTCTTATTGGTACAACTTTTTCTCTTCTTATTAGAATGGAATTAGCACAACCA Py._zeae_HQ708452.1 TTTGCTGGTATTTTAGGAACAACTTTTTCTTTAATGATAAGAATGGAATTAGCACAACCT P._irregulare_GU071876.1 TTTTCAGGTGTAGTTGGTACTACATTATCTGTTTTAATTAGAATGGAATTAGCACAACCC Ph._cinnamomi_HQ708267.1 TTTGCTGGTATTGTTGGTACAACTTTATCACTTTTAATTAGAATGGAATTAGCACAACCA P._myriotylum_HQ708745.1 TTTTCAGGTGTAGTTGGTACAACTTTATCTGTTTTAATTAGAATGGAATTAGCACAACCA Py._ramosum_UQ6053 GGTAATCAAATTTTTCAAGGAAATTACCAATTATATAATGTAATAGTTACAGCTCATGCA Py._ramosum_UQ6207 GGTAATCAAATTTTTCAAGGAAATTACCAATTATATAATGTAATAGTTACAGCTCATGCA Py._ramosum_UQ6214 GGTAATCAAATTTTTCAAGGAAATTACCAATTATATAATGTAATAGTTACAGCTCATGCA Py._ramosum_UQ6020 GGTAATCAAATTTTTCAAGGAAATTACCAATTATATAATGTAATAGTTACAGCTCATGCA Py._ramosum_UQ6208 GGTAATCAAATTTTTCAAGGAAATTACCAATTATATAATGTAATAGTTACAGCTCATGCA Py._ramosum_UQ6209 GGTAATCAAATTTTTCAAGGAAATTACCAATTATATAATGTAATAGTTACAGCTCATGCA Py._ramosum_UQ6210 GGTAATCAAATTTTTCAAGGAAATTACCAATTATATAATGTAATAGTTACAGCTCATGCA Py._ramosum_UQ6211 GGTAATCAAATTTTTCAAGGAAATTACCAATTATATAATGTAATAGTTACAGCTCATGCA Py._ramosum_UQ6212 GGTAATCAAATTTTTCAAGGAAATTACCAATTATATAATGTAATAGTTACAGCTCATGCA Py._ramosum_UQ6213 GGTAATCAAATTTTTCAAGGAAATTACCAATTATATAATGTAATAGTTACAGCTCATGCA Py._zeae_HQ708452.1 GGTGATCAAATTTTCCAAGCAAATTATCAATTATATAATGTTGTAGTTACAGCACACGCT P._irregulare_GU071876.1 GGTAATCAAATTTTTGCGGGTAATCATCATTTATATAATGTTGTGGTTACTGCACATGCA Ph._cinnamomi_HQ708267.1 GGTAATCAAATTTTAATGGGAAATCATCAATTATATAATGTAGTTGTAACTGCACATGCT P._myriotylum_HQ708745.1 GGTAATCAAATTTTTATGGGAAATCATCAATTATATAATGTTGTTGTTACTGCTCATGCT Py._ramosum_UQ6053 TTTCTTATGATCTTTTTTATGGTAATGCCTATTTTAATAGGTGGTTTTGGTAATTGGTTT Py._ramosum_UQ6207 TTTCTTATGATCTTTTTTATGGTAATGCCTATTTTAATAGGTGGTTTTGGTAATTGGTTT Py._ramosum_UQ6214 TTTCTTATGATCTTTTTTATGGTAATGCCTATTTTAATAGGTGGTTTTGGTAATTGGTTT Py._ramosum_UQ6020 TTTCTTATGATCTTTTTTATGGTAATGCCTATTTTAATAGGTGGTTTTGGTAATTGGTTT Py._ramosum_UQ6208 TTTCTTATGATCTTTTTTATGGTAATGCCTATTTTAATAGGTGGTTTTGGTAATTGGTTT Py._ramosum_UQ6209 TTTCTTATGATCTTTTTTATGGTAATGCCTATTTTAATAGGTGGTTTTGGTAATTGGTTT Py._ramosum_UQ6210 TTTCTTATGATCTTTTTTATGGTAATGCCTATTTTAATAGGTGGTTTTGGTAATTGGTTT Py._ramosum_UQ6211 TTTCTTATGATCTTTTTTATGGTAATGCCTATTTTAATAGGTGGTTTTGGTAATTGGTTT Py._ramosum_UQ6212 TTTCTTATGATCTTTTTTATGGTAATGCCTATTTTAATAGGTGGTTTTGGTAATTGGTTT Py._ramosum_UQ6213 TTTCTTATGATCTTTTTTATGGTAATGCCTATTTTAATAGGTGGTTTTGGTAATTGGTTT Py._zeae_HQ708452.1 TTTTTAATGATTTTTTTTATGGTAATGCCTATTTTAATTGGTGGTTTTGGTAATTGGTTT P._irregulare_GU071876.1 TTTATTATGATTTTTTTTATGGTTATGCCTGTATTAATAGGTGGTTTTGGTAATTGGTTT Ph._cinnamomi_HQ708267.1 TTTATAATGGTTTTCTTTTTAGTTATGCCAGCTTTAATTGGTGGTTTCGGTAATTGGTTT P._myriotylum_HQ708745.1 TTTATTATGATTTTCTTTATGGTTATGCCTGTTTTAATAGGTGGTTTTGGTAACTGGTTT Py._ramosum_UQ6053 GTACCTTTAATGATAGGAGCACCTGATATGGCTTTTCCTAGAATGAACAATATTAGTTTT Py._ramosum_UQ6207 GTACCTTTAATGATAGGAGCACCTGATATGGCTTTTCCTAGAATGAACAATATTAGTTTT Py._ramosum_UQ6214 GTACCTTTAATGATAGGAGCACCTGATATGGCTTTTCCTAGAATGAACAATATTAGTTTT Py._ramosum_UQ6020 GTACCTTTAATGATAGGAGCACCTGATATGGCTTTTCCTAGAATGAACAATATTAGTTTT Py._ramosum_UQ6208 GTACCTTTAATGATAGGAGCACCTGATATGGCTTTTCCTAGAATGAACAATATTAGTTTT Py._ramosum_UQ6209 GTACCTTTAATGATAGGAGCACCTGATATGGCTTTTCCTAGAATGAACAATATTAGTTTT Py._ramosum_UQ6210 GTACCTTTAATGATAGGAGCACCTGATATGGCTTTTCCTAGAATGAACAATATTAGTTTT Py._ramosum_UQ6211 GTACCTTTAATGATAGGAGCACCTGATATGGCTTTTCCTAGAATGAACAATATTAGTTTT Py._ramosum_UQ6212 GTACCTTTAATGATAGGAGCACCTGATATGGCTTTTCCTAGAATGAACAATATTAGTTTT Py._ramosum_UQ6213 GTACCTTTAATGATAGGAGCACCTGATATGGCTTTTCCTAGAATGAACAATATTAGTTTT Py._zeae_HQ708452.1 ATACCTTTAATGATAGGAGCACCTGATATGGCTTTTCCTAGAATGAATAATATAAGTTTT P._irregulare_GU071876.1 GTACCTTTAATGATTGGTGCACCTGATATGGCTTTTCCTCGTATGAATAATATAAGTTTT Ph._cinnamomi_HQ708267.1 GTTCCTTTAATGATTGGTGCTCCAGATATGGCTTTTCCACGTATGAATAATATCAGTTTT P._myriotylum_HQ708745.1 GTACCTTTAATGATTGGTGCTCCAGATATGGCTTTTCCAAGAATGAATAATATTAGTTTT Py._ramosum_UQ6053 TGGTTATTACCTCCTTCATTATTATTATTATTATCTTCAGCACTAGTAGAATCTGGTGCA Py._ramosum_UQ6207 TGGTTATTACCTCCTTCATTATTATTATTATTATCTTCAGCATTAGTAGAATCTGGTGCA Py._ramosum_UQ6214 TGGTTATTACCTCCTTCATTATTATTATTATTATCTTCAGCATTAGTAGAATCTGGTGCA Py._ramosum_UQ6020 TGGTTATTACCTCCTTCATTATTATTATTATTATCTTCAGCACTAGTAGAATCTGGTGCA Py._ramosum_UQ6208 TGGTTATTACCTCCTTCATTATTATTATTATTATCTTCAGCATTAGTAGAATCTGGTGCA Py._ramosum_UQ6209 TGGTTATTACCTCCTTCATTATTATTATTATTATCTTCAGCATTAGTAGAATCTGGTGCA Py._ramosum_UQ6210 TGGTTATTACCTCCTTCATTATTATTATTATTATCTTCAGCATTAGTAGAATCTGGTGCA Py._ramosum_UQ6211 TGGTTATTACCTCCTTCATTATTATTATTATTATCTTCAGCATTAGTAGAATCTGGTGCA Py._ramosum_UQ6212 TGGTTATTACCTCCTTCATTATTATTATTATTATCTTCAGCATTAGTAGAATCTGGTGCA Py._ramosum_UQ6213 TGGTTATTACCTCCTTCATTATTATTATTATTATCTTCAGCATTAGTAGAATCTGGTGCA Py._zeae_HQ708452.1 TGGTTATTACCACCATCATTATTATTATTATTATCTTCAGCTTTAGTTGAATCTGGTGCT P._irregulare_GU071876.1 TGGTTATTACCACCATCATTATTATTATTAGTATCTTCAGCAATTGTTGAGTCTGGAGCT Ph._cinnamomi_HQ708267.1 TGGTTATTACCTCCAGCTTTATTATTATTAGTTTCATCTGCAATCGTTGAATCAGGTGCT P._myriotylum_HQ708745.1 TGGTTATTACCCCCATCTTTATTATTATTAGTGTCTTCTGCTATTGTAGAATCTGGTGCT Py._ramosum_UQ6053 GGTACTGGTTGGACTGTATATCCTCCTTTATCAAGTATACAAGCACATTCAGGTCCTTCA Py._ramosum_UQ6207 GGTACTGGTTGGACTGTATATCCTCCTTTATCAAGTATACAAGCACATTCAGGTCCATCA Py._ramosum_UQ6214 GGTACTGGTTGGACTGTATATCCTCCTTTATCAAGTATACAAGCACATTCAGGTCCATCA Py._ramosum_UQ6020 GGTACTGGTTGGACTGTATATCCTCCTTTATCAAGTATACAAGCACATTCAGGTCCTTCA Py._ramosum_UQ6208 GGTACTGGTTGGACTGTATATCCTCCTTTATCAAGTATACAAGCACATTCAGGTCCATCA Py._ramosum_UQ6209 GGTACTGGTTGGACTGTATATCCTCCTTTATCAAGTATACAAGCACATTCAGGTCCATCA Py._ramosum_UQ6210 GGTACTGGTTGGACTGTATATCCTCCTTTATCAAGTATACAAGCACATTCAGGTCCATCA Py._ramosum_UQ6211 GGTACTGGTTGGACTGTATATCCTCCTTTATCAAGTATACAAGCACATTCAGGTCCATCA Py._ramosum_UQ6212 GGTACTGGTTGGACTGTATATCCTCCTTTATCAAGTATACAAGCACATTCAGGTCCATCA Py._ramosum_UQ6213 GGTACTGGTTGGACTGTATATCCTCCTTTATCAAGTATACAAGCACATTCAGGTCCATCA Py._zeae_HQ708452.1 GGTACTGGTTGGACAGTATATCCACCATTATCAAGTGTTCAAGCACATTCAGGTCCTTCA P._irregulare_GU071876.1 GGTACTGGTTGGACAGTATATCCACCTTTATCTAGTGTACAAGCACATTCAGGTCCATCA Ph._cinnamomi_HQ708267.1 GGTACTGGTTGGACTGTTTATCCACCATTATCAAGCGTTCAAGCACATTCAGGACCTTCA P._myriotylum_HQ708745.1 GGTACTGGTTGGACAGTATATCCTCCATTATCAAGTGTTCAAGCACACTCAGGACCTTCA Py._ramosum_UQ6053 GTAGATCTCGCTATTTTTAGTATACATTTATCAGGTATATCTTCATTATTAGGTGCTATT Py._ramosum_UQ6207 GTAGATCTTGCTATTTTTAGTATACATTTATCAGGTATATCTTCATTATTAGGTGCTATT Py._ramosum_UQ6214 GTAGATCTTGCTATTTTTAGTATACATTTATCAGGTATATCTTCATTATTAGGTGCTATT Py._ramosum_UQ6020 GTAGATCTCGCTATTTTTAGTATACATTTATCAGGTATATCTTCATTATTAGGTGCTATT Py._ramosum_UQ6208 GTAGATCTTGCTATTTTTAGTATACATTTATCAGGTATATCTTCATTATTAGGTGCTATT Py._ramosum_UQ6209 GTAGATCTTGCTATTTTTAGTATACATTTATCAGGTATATCTTCATTATTAGGTGCTATT Py._ramosum_UQ6210 GTAGATCTTGCTATTTTTAGTATACATTTATCAGGTATATCTTCATTATTAGGTGCTATT Py._ramosum_UQ6211 GTAGATCTTGCTATTTTTAGTATACATTTATCAGGTATATCTTCATTATTAGGTGCTATT Py._ramosum_UQ6212 GTAGATCTTGCTATTTTTAGTATACATTTATCAGGTATATCTTCATTATTAGGTGCTATT Py._ramosum_UQ6213 GTAGATCTTGCTATTTTTAGTATACATTTATCAGGTATATCTTCATTATTAGGTGCTATT Py._zeae_HQ708452.1 GTAGATTTAGCTATTTTTAGTTTACATTTATCTGGTATTTCATCTATGTTAGGAGCAATT P._irregulare_GU071876.1 GTAGATTTAGCTATTTTTAGTTTACATCTGTCTGGTATTTCTTCATTATTAGGTGCTATT Ph._cinnamomi_HQ708267.1 GTAGATTTAGCTATTTTTAGTTTACATTTAACAGGTATTTCATCATTATTAGGTGCCATT P._myriotylum_HQ708745.1 GTGGATTTAGCTATTTTTAGTTTACATTTATCTGGTATCTCATCTTTATTAGGTGCTATA Py._ramosum_UQ6053 AATTTTTTATCAACAATAATTAATATGAGAATACCTGGTTTAACTTTTTATAGATTACCT Py._ramosum_UQ6207 AATTTTTTATCAACAATAATTAATATGAGAATACCTGGTTTAACTTTTTATAGATTACCT Py._ramosum_UQ6214 AATTTTTTATCAACAATAATTAATATGAGAATACCTGGTTTAACTTTTTATAGATTACCT Py._ramosum_UQ6020 AATTTTTTATCAACAATAATTAATATGAGAATACCTGGTTTAACTTTTTATAGATTACCT Py._ramosum_UQ6208 AATTTTTTATCAACAATAATTAATATGAGAATACCTGGTTTAACTTTTTATAGATTACCT Py._ramosum_UQ6209 AATTTTTTATCAACAATAATTAATATGAGAATACCTGGTTTAACTTTTTATAGATTACCT Py._ramosum_UQ6210 AATTTTTTATCAACAATAATTAATATGAGAATACCTGGTTTAACTTTTTATAGATTACCT Py._ramosum_UQ6211 AATTTTTTATCAACAATAATTAATATGAGAATACCTGGTTTAACTTTTTATAGATTACCT Py._ramosum_UQ6212 AATTTTTTATCAACAATAATTAATATGAGAATACCTGGTTTAACTTTTTATAGATTACCT Py._ramosum_UQ6213 AATTTTTTATCAACAATAATTAATATGAGAATACCTGGTTTAACTTTTTATAGATTACCT Py._zeae_HQ708452.1 AATTTTATATCAACTATTTTAAATATGAGAATTCCTGGCTTAAATTTTTATAGATTACCT P._irregulare_GU071876.1 AATTTTTTATCTACTATTTATAATATGAGAGCTCCAGGTTTAAGTTTTCATAGATTACCT Ph._cinnamomi_HQ708267.1 AATTTTATTTCAACTATTTATAATATGAGAGCTCCTGGTTTAAGTTTTCATAGATTACCT P._myriotylum_HQ708745.1 AATTTTTTATCTACCATTTATAATATGAGAGCTCCTGGTTTAAGCTTCCATAGATTACCT Py._ramosum_UQ6053 CTATTTGTTTGGGCTGTTTTTATAACTGCTTTTTTATTATTATTAACTTTACCTGTTTTA Py._ramosum_UQ6207 CTATTTGTTTGGGCTGTTTTTATAACTGCTTTTTTATTATTATTAACTTTACCTGTTTTA Py._ramosum_UQ6214 CTATTTGTTTGGGCTGTTTTTATAACTGCTTTTTTATTATTATTAACTTTACCTGTTTTA Py._ramosum_UQ6020 CTATTTGTTTGGGCTGTTTTTATAACTGCTTTTTTATTATTATTAACTTTACCTGTTTTA Py._ramosum_UQ6208 CTATTTGTTTGGGCTGTTTTTATAACTGCTTTTTTATTATTATTAACTTTACCTGTTTTA Py._ramosum_UQ6209 CTATTTGTTTGGGCTGTTTTTATAACTGCTTTTTTATTATTATTAACTTTACCTGTTTTA Py._ramosum_UQ6210 CTATTTGTTTGGGCTGTTTTTATAACTGCTTTTTTATTATTATTAACTTTACCTGTTTTA Py._ramosum_UQ6211 CTATTTGTTTGGGCTGTTTTTATAACTGCTTTTTTATTATTATTAACTTTACCTGTTTTA Py._ramosum_UQ6212 CTATTTGTTTGGGCTGTTTTTATAACTGCTTTTTTATTATTATTAACTTTACCTGTTTTA Py._ramosum_UQ6213 CTATTTGTTTGGGCTGTTTTTATAACTGCTTTTTTATTATTATTAACTTTACCTGTTTTA Py._zeae_HQ708452.1 TTATATGTTTGGGCTATTTTTATAACATCTTTTTTATTAATTCTAACATTACCTGTTTTA P._irregulare_GU071876.1 TTATTTGTTTGGGCTATATTTATTACAGCTTTCTTATTATTATTAACTTTACCTGTATTA Ph._cinnamomi_HQ708267.1 TTATTTGTATGGTCTGTATTAATTACCGCATTTCTTTTATTATTAACTTTACCTGTATTA P._myriotylum_HQ708745.1 TTATTTGTATGGTCTGTATTTATTACTGCTTTCTTATTATTATTAACATTACCTGTATTA Py._ramosum_UQ6053 GCAGGAGCTCTTACAATGTTATTAACAGATAGAAACTTTAATACATCTTTTTATGATCCT Py._ramosum_UQ6207 GCAGGAGCTCTTACAATGTTATTAACAGATAGAAATTTTAATACATCTTTTTATGATCCT Py._ramosum_UQ6214 GCAGGAGCTCTTACAATGTTATTAACAGATAGAAATTTTAATACATCTTTTTATGATCCT Py._ramosum_UQ6020 GCAGGAGCTCTTACAATGTTATTAACAGATAGAAACTTTAATACATCTTTTTATGATCCT Py._ramosum_UQ6208 GCAGGAGCTCTTACAATGTTATTAACAGATAGAAATTTTAATACATCTTTTTATGATCCT Py._ramosum_UQ6209 GCAGGAGCTCTTACAATGTTATTAACAGATAGAAATTTTAATACATCTTTTTATGATCCT Py._ramosum_UQ6210 GCAGGAGCTCTTACAATGTTATTAACAGATAGAAATTTTAATACATCTTTTTATGATCCT Py._ramosum_UQ6211 GCAGGAGCTCTTACAATGTTATTAACAGATAGAAATTTTAATACATCTTTTTATGATCCT Py._ramosum_UQ6212 GCAGGAGCTCTTACAATGTTATTAACAGATAGAAATTTTAATACATCTTTTTATGATCCT Py._ramosum_UQ6213 GCAGGAGCTCTTACAATGTTATTAACAGATAGAAATTTTAATACATCTTTTTATGATCCT Py._zeae_HQ708452.1 GCAGGAGCGATTACAATGTTATTAACAGATAGAAATTTTAATACTTCTTTTTATGATCCT P._irregulare_GU071876.1 GCTGGTGCAATTACTATGTTATTAACAGATAGAAATTTAAATACATCTTTTTATGATCCT Ph._cinnamomi_HQ708267.1 GCTGGAGCAATTACTATGTTATTAACTGATAGAAATTTAAATACTTCTTTTTATGATCCT P._myriotylum_HQ708745.1 GCTGGAGCGATTACAATGTTATTAACAGATAGAAACTTAAATACATCGTTTTATGATCCT Py._ramosum_UQ6053 TCTGGTGGTGGTGATCCTGTTTTATATCAACATTTATTTTGGTTTTTC------------ Py._ramosum_UQ6207 TCTGGTGGTGGTGATCCTGTTTTATATCAACATTTATTTTGGTTTTTCGGA--------- Py._ramosum_UQ6214 TCTGGTGGTGGTGATCCTGTTTTATATCAACATTTATTTTGGTTTTTCGGACACCCTGA- Py._ramosum_UQ6020 TCTGGTGGTGGTGATCCTGTTTTATATCAACATTTATTTTGGTTTTTC------------ Py._ramosum_UQ6208 TCTGGTGGTGGTGATCCTGTTTTATATCAACATTTATTTTGGTTTTTCGGA--------- Py._ramosum_UQ6209 TCTGGTGGTGGTGATCCTGTTTTATATCAACATTTATTTTGGTTTTTCGGA--------- Py._ramosum_UQ6210 TCTGGTGGTGGTGATCCTGTTTTATATCAACATTTATTTTGGTTTTTCGGA--------- Py._ramosum_UQ6211 TCTGGTGGTGGTGATCCTGTTTTATATCAACATTTATTTTGGTTTTTCGGACACCCTGA- Py._ramosum_UQ6212 TCTGGTGGTGGTGATCCTGTTTTATATCAACATTTATTTTGGTTTTTCGGA--------- Py._ramosum_UQ6213 TCTGGTGGTGGTGATCCTGTTTTATATCAACATTTATTTTGGTTTTTCGGACACCCTGA- Py._zeae_HQ708452.1 TCCGGTGGTGGTGATCCTGTATTATATCAACATTTATT---------------------- P._irregulare_GU071876.1 TCAGGAGGAGGTGATCCTGTATTATATCAACATTTATTTTGGTTTTTTGGTCACCCTGAA Ph._cinnamomi_HQ708267.1 TCAGGTGGAGGTGATCCAGTATTATATCAACATTTATT---------------------- P._myriotylum_HQ708745.1 TCAGGCGGAGGTGATCCTGTTTTATATCAACATTTATT---------------------- Py._ramosum_UQ6053 ----------------------- Py._ramosum_UQ6207 ----------------------- Py._ramosum_UQ6214 ----------------------- Py._ramosum_UQ6020 ----------------------- Py._ramosum_UQ6208 ----------------------- Py._ramosum_UQ6209 ----------------------- Py._ramosum_UQ6210 ----------------------- Py._ramosum_UQ6211 ----------------------- Py._ramosum_UQ6212 ----------------------- Py._ramosum_UQ6213 ----------------------- Py._zeae_HQ708452.1 ----------------------- P._irregulare_GU071876.1 GTTTATGTTTTAATTTTACCAGC Ph._cinnamomi_HQ708267.1 ----------------------- P._myriotylum_HQ708745.1 ----------------------- ; END; BEGIN TREES; Title 'COI tree 8-1-15'; LINK Taxa = 'COI taxa 8-1-15'; TRANSLATE 1 Py._ramosum_UQ6053, 2 Py._ramosum_UQ6207, 3 Py._ramosum_UQ6214, 4 Py._ramosum_UQ6020, 5 Py._ramosum_UQ6208, 6 Py._ramosum_UQ6209, 7 Py._ramosum_UQ6210, 8 Py._ramosum_UQ6211, 9 Py._ramosum_UQ6212, 10 Py._ramosum_UQ6213, 11 Py._zeae_HQ708452.1, 12 P._irregulare_GU071876.1, 13 Ph._cinnamomi_HQ708267.1, 14 P._myriotylum_HQ708745.1; TREE tree_1 = ((((1:0.0,4:0.0):0.002878,(((((((2:0.0,3:0.0):0.0,5:0.0):0.0,6:0.0):0.0,7:0.0):0.0,8:0.0):0.0,9:0.0):0.0,10:0.0):0.002878):0.055611,11:0.058489):0.017421,((12:0.048903,14:0.048903):0.012172,13:0.061075):0.017421); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 743; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 743; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 743; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1420680700887; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 374846707023590568; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6753167773461507069; mqVersion 275; checksumv 0 3 377120319 null getNumChars 743 numChars 743 getNumTaxa 14 numTaxa 14 short true bits 15 states 15 sumSquaresStatesOnly 304152.0 sumSquares 304152.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1 errorReportedDuringRun; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #374846707023590568 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #374846707023590568; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #374846707023590568 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1560.1420679673654.8668877550218290112; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.arrow; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #6753167773461507069 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;