#NEXUS [written Mon Jan 12 15:04:52 EST 2015 by Mesquite version 2.71 (build 514) at matthews-pro.ad.ufl.edu/10.248.24.89] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=34; TAXLABELS Coniophora_marmorata_AM946632_ Coniophora_opuntiae_FJ790314_ Coniophora_olivacea_AM747533 Coniophora_olivacea_AM747520_ Coniophora_olivacea_AM747528_ Coniophora_olivacea_AM747527_ Coniophora_olivacea_AM293005_ Coniophora_olivacea_AM747530_ Coniophora_puteana_EU722763_ Coniophora_puteana_AM293064_ Coniophora_puteana_AM293061_ Coniophora_puteana_AJ419198_ Coniophora_puteana_GU187520_ Coniophora_puteana_AM293047 Coniophora_puteana_AM293082_ Coniophora_puteana_AM293079 Coniophora_puteana_AM293077_ Coniophora_puteana_AM293007_ Coniophora_puteana_AY736018 Coniophora_arida_AM747504_ Coniophora_arida_GU187510_ Coniophora_arida_AM747511_ Sedecula_puvinata_Trappe67760 Leucogyrophana_arizonica_GU187527_ Leucogyrophana_romellii_EU118644_ Leucogyrophana_olivascens_GU187532_ Hygrophoropsis_aurantiaca_AJ419202_ Hygrophoropsis_aurantiaca_HF951530_ Hygrophoropsis_aurantiaca_HF951531_ Hygrophoropsis_aurantiaca_AY854067_ Hygrophoropsis_aurantiaca_AJ419201_ Hygrophoropsis_rufa_HF951529_ Hydnomerulius_pinastri_GU187523_ Serpula_incrassata_EU429519_ ; END; BEGIN CHARACTERS; TITLE Sedecula_ITS_dataset; DIMENSIONS NCHAR=793; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Coniophora_marmorata_AM946632_ ------TG-TTGTAG----------CTG-TGCTGGTCT--------------------TCTAAC------GGA------------GGCA-TGTGCACG------CTTGA---CTT-----CTTCCTTTCTT-CATTTAC--------ACACCTGTGAACTTG-TTGTAGGG-TGTCTCGCAAGA-GATGCTCTATGTC--TTTTCATAT-ACTCC-AATACTAGTCTATAGAATGTCATC----TT---------TTTGC--------------------TCTCGTCAGAGA----CAA-AAATAAAACCT-TTATAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATATGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTG-CGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTCTCAACT-CCCTTTGATTT-CT--TCAATGGTGAGCTTGGATTGTGGAGGC--CTGCT---GG-----C-TGCA-AA-GTCAGCTCCTCTGAAATGTATTGGCAAAGG--CGTGT--------GCATT-------------------------------------------------AATCGGCCTTTCGGTGTGATAATGATCACCG--TGGCTGG-CTTGCT-ATAA-----TGC-CTATGT--CTGCCTT-----CTTCTCCAT-TCACTTG-GATTAGA-----------AACCCCACTTG-ACAATTTG Coniophora_opuntiae_FJ790314_ ------TGCTTGCAG----------CTG-TGCTGGCCT--------------------CTT-AAAA----CGA------------GGCA-TGTGCACG------TTCAA---CGT-----CTCCTTTTCTT-CATTTAC--------ACACCTGTGAACCTG-TTGTAGGG-TGTCCCGCAAGG-AATGCTCTATGTCTTTTTTCATAT-ACTCC-A-TACAAGTTTTTAGAATGT-CCT----TT---------CTTGC--------------------TCTCGTCAGAGA----CAG-AAATAAAGCCT-TTATAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATATGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTG-CGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTCTCAACT-CCCTTTGATTT-CT--TCGAAGGCGAGCTTGGATCGTGGAGGCT-CTGCC---GG-----C-TGCACAA-GTCGGCTCCTCTGAAATGCATTGGCAAAGG--CGTGT--------GCATG-------------------------------------------------AATTGGCCTTTCGGTGTGATAATGATCACCG--TGGCTGG-ATTGCT-TTAA-----TGC-CTATGC--CCAACCT-------TTTCCAT-TGATTTG-GA--AAA-----------AACCCCACTTG-ACAATTTG Coniophora_olivacea_AM747533 ------CGTTTGTAG----------CTG-TGCTGGCCT--------------------CTA-ACAA----AGG------------GGCA-TGTGCACG------CTCGA---CTT-----CTC-TTTTCTT-CATTTAC--------ACACCTGTGAACCTGTTTGTAGGG-TGTCTCGCAAGG-GATGCTCTATGTC-TTTTTCATAT-ACCCC-ATTGTATGTTTATAGAATGT-ATC----TT---------TTTGC--------------------TCTCGTCAGAGA----CAA-AAGTAAAGCCT-TTATAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATATGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTG-CGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTCTCAACT-CCCTTTGATTT-CT--TCAAGGGTGAGCTTGGACCGTGGAGGCT-CTGCC---GG-----C-TGTG-AA-GTCGGCTCCTCTGAAATGCATTGGCAAATG--CGTGT--------GCATG-------------------------------------------------AATCGGCCTTTCGGTGTGATAATGATCACCG--TGGCTGG-ATTGCT-TTAA-----CGT-CTATGC--CCAACCT-------TTTCCAT-TTACTTG-G---AAA-----------AAACCCACTTG-ACATTTTG Coniophora_olivacea_AM747520_ ------TGTTTGCAG----------CTG-TGCTGGCCT--------------------CCG-ACAA----AGG------------GGYA-TGTGCACG------CTCAG---CTT-----CTCCTTTTCTT-CATTTAC--------ACACCTGTGAACCTGTTTGTAGGG-TGTCTCGCAAGG-GATGCTCTATGTC-TTTTTCATAT-ACACC-ATTGTATGTTTATAGAATGT-ATC----TT---------TTTGC--------------------TCTCGTCAGAGA----CAA-AAGTAAAGCCT-TTATAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATATGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTG-CGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTCTCAACT-CCCTTTGATTT-TT--TCAAGGGTGAGCTTGGATCGTGGAGGCT-CTGCC---GG-----C-TGTG-AA-GTCGGCTCCTCTGAAATGCATTGGCAAATG--CGTGT--------GCATG-------------------------------------------------AATCGGCCTTTCGGTGTGATAATGATCACCG--TGGCTGG-ATTGCT-TTAA-----CGT-CTATGC--CCAACCT-------TTTCCAT-TGACTTG-G---AAA-----------AACCCCACTTG-ACATTTTG Coniophora_olivacea_AM747528_ ------CGTTTGTAG----------TTG-TGCTGGCCT--------------------CCC-ACAA----AGG------------GGCA-TGTGCACG------CTCGA---CGT-----CTCTTTTTCTT-CATTTAC--------ACACCTGTGAACCTGTTTGTAGGG-TGTCTCGCAAGG-GATGCTCTATGTC-TTTTTCATAT-ACCCC-ATTGTATGTTTATAGAATGT-ATC----TT---------TTTGC--------------------TCTCGTCAGAGA----CAA-AAGTAAAGCCT-TTATAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATATGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTG-CGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTCTCAACT-CCCTTTGATTT-CT--TCAAGGGTGAGCTTGGACCGTGGAGGCT-CTGCC---GG-----C-TGTG-AA-GTCGGCTCCTCTGAAATGCATTGGCAAATG--CGTGT--------GCATG-------------------------------------------------AATCGGCCTTTCGGTGTGATAATGATCACCG--TGGCTGG-ATTGCT-TTAA-----CGT-CTATGC--CCAACCT-------TTTCCAT-TTACTTG-G---GAA-----------AACCCCACTTG-ACATTTTG Coniophora_olivacea_AM747527_ ------CGTTTGTAG----------TTG-TGCTGGCCT--------------------CCG-ACAA----AGG------------GGCA-TGTGCACG------CTCGA---CGT-----CTCTTTTTCTT-CATTTAC--------ACACCTGTGAACCTGTTTGTAGGG-TGTCTCGCAAGG-GATGCTCTATGTC-TTTTTTATAT-ACCCC-ATTGTATGTTTATAGAATGT-ATC----TT---------TTTGC--------------------TCTCGTCAGAGA----CAA-AAGTAAAGCCT-TTATAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATATGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTG-CGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTCTCAACT-CCCTTTGATTT-CT--TCAAGGGTGAGCTTGGACTGTGGAGGCT-CTGCC---GG-----C-TGTG-AA-GTCGGCTCCTCTGAAATGCATTGGCAAATG--CGTGT--------GCATG-------------------------------------------------AATCGGCCTTTCGGTGTGATAATGATCACCG--TGGCTGG-ATTGCT-TTAA-----CGT-CTATGC--CCAACCT-------TTTCCAT-TTACTTG-G---GAA-----------AACCCCACTTG-ACATTTTG Coniophora_olivacea_AM293005_ ------TGTTTGTAG----------CTG-TGCTGGCCT--------------------CCG-ACAA----AGG------------GGTA-TGTGCACG------CTCGA---CTT-----CTCTTTTTCTT-CATTTAC--------ACACCTGTGAACCCGTTTGTAGGG-TGTCTCGCAAGG-GATGCTCTATGTC-TTTTTCATAT-ACCCC-ATTGTATGTTTTTAGAATGT-ATC----TT---------TTTGC--------------------TCTCGTCAGAGA----CAA-AAGTAAAGCCT-TTATAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATATGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTG-CGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTCTCAACT-CCCTTTGATTT-CT--TCAAGGGTGAGCTTGGACCGTGGAGGCT--TGCC---GG-----C-TGTG-AA-GTCGGCTCCTCTGAAATGCATTGGCARATG--CGTGT--------GCATG-------------------------------------------------AATCGGCCTTTCGGTGTGATAATGATCACCG--TGGCTGG-ATTGCT-TTAA-----CGT-CTATGC--CCAACCT-------TTTCCAT-TTACTTG-G---AAA-----------AACCCCACTTG-ACATTTTG Coniophora_olivacea_AM747530_ ------CGTTTGTAG----------CTG-TGCTGGCCT--------------------CCG-ACAA----AGG------------GGCA-TGTGCACG------CTCGA---CTT-----CTCCTTTTCTT-CATTTAC--------ACCCCTGTGAACCTGTTTGTAGGG-TGTCTCGCAAGA-GATGCTCTATGTC-TTTTTCATAT-ACTCC-ATCGTATGTTTATAGAATGT-ATC----TT---------TTTGC--------------------TCTCGTCAGAGA----CAA-AAGTAAAGCCT-TTATAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATATGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTG-CGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTCTCAACT-CCCTTTGATTT--T--TCAAGGGTGAGCTTGGATCGTGGAGGCT-CTGCC---GG-----C-TGTG-AA-GTCGGCTCCTCTGAAATGCATTGGCAAATG--CGTGT--------GCATG-------------------------------------------------AATCGGCCTTTCGGTGTGATAATGATCACCG--TGGCTGG-ATTGCT-TTAA-----CGT-TTATGC--CCAACCT-------TTTCCAT-TGACTTG-G---AAA-----------AACCCCACTTG-ACATTTTG Coniophora_puteana_EU722763_ ------TG-TTATAG----------TAG-TGCTGGCCT--------------------CTG-TAAT----GGA------------GGTATTGTGCACG------CTCGA---CTT-----CTTCCTTTCTT-CATTTAC--------ACACCTGTGAACTTG-TTGTAGGGTTGTCTCGCAAGA-GACGCTCTATGTC-TTTCTCATAT-ACTCC-AT--AATGTTTATAGAATGT-ACC----TT---------TTTGC--------------------TCTCGTCAGAGA----CAA-AAATAAAGCCT-TTATAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATATGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTG-CGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTCTCAACT-CCCTTTGATTT-CT--TCAAAGGCGAGCTTGGATCTTGGAGGCT-TTGCC---GG-----CTTGTA-AA-GTCGGCTCCTCTGAAAAGCATTGGTAAAGA--CGTAT-----T--GCATGCCTCTGTAATGGAGGTGTGTGCTGGCCTCTGTAATGGAGGTTGGTATCAGGTCGGCCTTTCGGTGTGATAATGATCACCG--TGGCTTG-CTGGCTATTAA-----TGT-CTATGC--CTTACTTGCTACTTTTTCCAT-TGACTTG-GA--AAA-----------AAGCACTTTGA-CCATTTTG Coniophora_puteana_AM293064_ ------TG-TTATAG----------TAG-TGCTGGCCT--------------------CTG-TAAT----GGA------------GGTATTGTGCACG------CTCGA---CTT-----CTTCCTTTCTT-CATTTAC--------ACACCTGTGAACTTG-TTGTAGGGTTGTCTCGCAAGA-GACGCTCTATGTC-TTTCTCATAT-ACTCC-AT--AATGTTTATAGAATGT-ACC----TT---------TTTGC--------------------TCTCGTCAGAGA----CAA-AAATAAAGCCT-TTATAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATATGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTG-CGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTCTCAACT-CCCTTTGATTT-CT--TCAAAGGCGAGCTTGGATCTTGGAGGCT-TTGCC---GG-----CTTGTA-AA-GTCGGCTCCTCTGAAAAGCATTGGTAAAGA--CGTAT-----T--GCATGCCTCTGTAATGGAGGTGTGTGCTGGCCTCTGTAATGGAGGTTGGTATCAGGTCGGCCTTTCGGTGTGATAATGATCACCG--TGGCTAG-CTGGCTATTAG-----TGT-CTATGC--CTTACTTGCTACTTTTTCCAT-TGACTTG-GA--AAA-----------AAGCACTTTGA-CCATTTTG Coniophora_puteana_AM293061_ ------TG-TTATAG----------TAG-TGCTGGCCT--------------------CTG-TAAT----GGA------------GGTATTGTGCACG------CTCGA---CTT-----CTTCCTTTCTT-CATTTAC--------ACACCTGTGAACTTG-TTGTAGGGTTGTCTCGCAAGA-GACGCTCTATGTC-TTTCTCATAT-ACTCC-AT--AATGTTTATAGAATGT-ACC----TT---------TTTGC--------------------TCTCGTCAGAGA----CAA-AAATAAAGCCT-TTATAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATATGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTG-CGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTCTCAACT-CCCTTTGATTT-CT--TCAAAGGCGAGCTTGGATCTTGGAGGCT-TTGCC---GG-----CTTGTA-AA-GTCGGCTCCTCTGAAAAGCATTGGTAAAGA--CGTAT-----T--GCATGCCTCTGTAATGGAGGTGTGTGCTGGCCTCTGTAATGGAGGTTGGTATCAGGTCGGCCTTTCGGTGTGATAATGATCACCG--TGGCTAG-CTGGCTATTAA-----TGT-CTATGC--CTTACTTGCTACTTTTTCCAT-TGACTTG-GA--AGA-----------AAGCACTTTGA-CCATTTTG Coniophora_puteana_AJ419198_ ------TG-TTATAG----------TAG-TGCTGGCCT--------------------CTG-TAAT----GGA------------GGTATTGTGCACG------CTCGA---CTT-----CTTCCTTTCTT-CATTTAC--------ACACCTGTGAACTTG-TTGTAGGGTTGTCTCGCAAGA-GACGCTCTATGTC-TTTCTCATAT-ACTCC-AT--AATGTTTATAGAATGT-ACC----TT---------TTTGC--------------------TCTCGTCAGAGA----CAA-AAATAAAGCCT-TTATAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATATGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTG-CGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTCTCAACT-CCCTTTGATTT-CT--TCAAAGGCGAGCTTGGATCTTGGAGGCT-TTGCC---GG-----CTTGTA-AA-GTCGGCTCCTCTGAAAAGCATTGGTAAAGA--CGTAT-----T--GCATGCCTCTGTAATGGAGGTGTGTGCTGGCCTCTGTAATGGAGGTTGGTATCAGGTCGGCCTTTCGGTGTGATAATGATCACCG--TGGCTAG-CTGGCTATTAA------GT-CTATGC--CTTACTTGCTACTTTTTCCAT-TGACTTG-GA--AGA-----------AAGCACTTTGA-CCATTTTG Coniophora_puteana_GU187520_ ------TG-TTATAG----------TAG-TGCTGGCCT--------------------CTG-TCAT----GGA------------GGTATTGTGCACG------CTCGA---CTT-----CTTCCTTTCTT-CATTTAC--------ACACCTGTGAACTTG-TTGTAGGGTTGTCTCGCAAGA-GACGCTCTATGTC-TTTCTCATAT-ACTCC-AT--AATGTTTATAGAATGT-ACC----TT---------TTTGC--------------------TCTCGTCAGAGA----CAA-AAATAAAGCCT-TTATAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATATGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTG-CGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTCTCAACT-CTCTTTGATTT-AT--TCAAAGGCGAGCTTGGATCTTGGAGGCT-TTGCC---GG-----C-TGTG-AA-GTCGGCTCCTCTGAAAAGCATTGGTAAAGA--CGTAT-----T--GCATGCCTCTGTAATGGAGGTGTGTGCTGGCCTCTGTAATGGAGGTTGGTATCAGGTCGGCCTTTCGGTGTGATAATGATCGCCG--TGGCTAG-CTGGCTATTCA-----TGT-CTATGC--CTTACTTGCTACTTTTTCCAT-TGACTTG-GA--AAA-----------AAGCACTTTGA-CCATTTTG Coniophora_puteana_AM293047 ------TG-TTATAG----------TAG-TGCTGGCCT--------------------CTG-TCAT----GGA------------GGTATTGTGCACG------CTCGA---CTT-----CTTCCTTTCTT-CATTTAC--------ACACCTGTGAACTTG-TTGTAGGGTTGTCTCGCAAGA-GACGCTCTATGTC-TTTCTCATAT-ACTCC-AT--AATGTTTATAGAATGT-ACC----TT---------TTTGC--------------------TCTCGTCAGAGA----CAA-AAATAAAGCCT-TTATAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATATGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTG-CGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTCTCAACT-CCCTTTGATTT-CT--TCAAAGGCGAGCTTGGATCTTGGAGGCT-TTGCC---GG-----C-TGTG-AA-GTCGGCTYCTCTGAAAAGCATTGGTAAAGA--CGTAT-----T--GCATGCCTCTGTAATGGAGGTGTGTGCTGGCCTCTGTAATGGAGGTTGGTATCAGGTCGGCCTTTCGGTGTGATAATGATCACCG--TGGCTAG-CTGGCTATTMA-----TGT-CTATGC--CTTACTTGCTACTTTTTCCAT-TGACTTG-GA--AAA-----------AAGCACTTTGA-CCATTTTG Coniophora_puteana_AM293082_ ------TG-TTATAG----------TAG-TGCTGGCCT--------------------CTG-TCAT----GGA------------GGTATTGTGCACG------CTCGA---CTT-----CTTCCTTTCTT-CATTTAC--------ACACCTGTGAACTTG-TTGTAGGGTTGTCTCGCAAGA-GACGCTCTATGTC-TTTCTCATAT-ACTCC-AT--AATGTTTATAGAATGT-ACC----TT---------TTTGC--------------------TCTCGTCAGAGA----CAA-AAATAAAGCCT-TTATAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATATGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTG-CGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTCTCAACT-CTCTTTGATTT-CT--TCAAAGGCGAGCTTGGATCTTGGAGGCT-TTGCC---GG-----C-TGTG-AA-GTCGGCTCCTCTGAAAAGCATTGGTAAAGA--CGTAT-----T--GCATGCCTCTGTAATGGAGGTGTGTGCTGGCCTCTGTAATGGAGGTTGGTATCAGGTCGGCCTTTCGGTGTGATAATGATCACCG--TGGCTAG-CTGGCTATGAA-----TGT-CTATGC--CTTACTTGCTACTTTTTCCAT-TGACTTG-GA--AAA-----------AAGCACTTTGA-CCATTTTG Coniophora_puteana_AM293079 ------TG-TTATAG----------TAG-TGCTGGCCT--------------------CTG-TCAT----GGA------------GGTATTGTGCACG------CTCGA---CTT-----CTTCCTTTCTT-CATTTAC--------ACACCTGTGAACTTG-TTGTAGGGTTGTCTCGCAAGA-GACGCTCTATGTC-TTTCTCATAT-ACTCC-AT--AATGTTTATAGAATGT-ACC----TT---------TTTGC--------------------TCTCGTCAGAGA----CAA-AAATAAAGCCT-TTATAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATATGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTG-CGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTCTCAACT-CTCTTTGATTT-CT--TCAAAGGCGAGCTTGGATCTTGGAGGCT-TTGCC---GG-----C-TGTG-AA-GTCGGCTCCTCTGAAAAGCATTGGTAAAGA--CGTAT-----T--GCATGCCTCTGTAATGGAGGTGTGTGCTGGCCTCTGTAATGGAGGTTGGTATCAGGTCGGCCTTTCGGTGTGATAATGATCACCG--TGGCTAG-CTGGCTATTAA-----TGT-CTATGC--CTTACTTGCTACTTTTTCCAT-TGACTTG-GA--AAA-----------AAGCACTTTGA-CCATTTTG Coniophora_puteana_AM293077_ ------TG-TCATAG----------TAG-TGCTGGCCT--------------------CTG-TCAT----GGA------------GGTATTGTGCACG------CTCGA---CTT-----CTTCCTTTCTT-CATTTAC--------ACACCTGTGAACTTG-TTGTAGGGTTGTCTCGCAAGA-GACGCTCTATGTC-TTTCTCATAT-ACTCC-AT--AATGTTTATAGAATGT-ACC----TT---------TTTGC--------------------TCTCGTCAGAGA----CAA-AAATAAAGCCT-TTATAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATATGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTG-CGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTCTCAACT-CTCTTTGATTT-CT--TCAAAGGCGAGCTTGGATCTTGGAGGCT-TTGCC---GG-----C-TGTG-AA-GTCGGCTCCTCTGAAAAGCATTGGTAAAGA--CGTAT-----T--GCATGCCTCTGTAATGGAGGTGTGTGCTGGCCTCTGTAATGGAGGTTGGTATCAGGTCGGCCTTTCGGTGTGATAATGATCACCG--TGGCTAG-CTGGCTATTAA-----TGT-CTATGC--CTTACTTGCTACTTTTTCCAT-TGACTTG-GA--AAA-----------AAGCACTTTGA-CCATTTTG Coniophora_puteana_AM293007_ ------TG-TCATAG----------TAG-TGCTGGCCT--------------------CTG-TCAT----GGA------------GGTATTGTGCACG------CTCGA---CTT-----CTTCCTTTCTT-CATTTAC--------ACACCTGTGAACTTG-TTGTAGGGTTGTCTCGCAAGA-GACGCTCTATGTC-TTTCTCATAT-ACTCC-AT--AATGTTTATAGAATGT-ACC----TT---------TTTGC--------------------TCTCGTCAGAGA----CAA-AAATAAAGCCT-TTATAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATATGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTG-CGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTCTCAACT-CTCTTTGATTT-CT--TCAAAGGCGAGCTTGGATCTTGGAGGCT-TTGCC---GG-----C-TGTG-AA-GTCGGCTCCTCTGAAAAGCATTGGTAAAGA--CGTAT-----T--GCATGCCTCTGTAATGGAGGTGTGTGCTGGCCTCTGTAATGGAGGTTGGTATCAGGTCGGCCTTTCGGTGTGATAATGATCACCG--TGGCTAG-CTGGCTATTAA-----TGT-CTATGC--CTTACTTGCTACTTTTTCCAT-TGACTTG-GA--AAA-----------AAGCACTTTGA-CCATTTTG Coniophora_puteana_AY736018 ------TG-TCATAG----------TAG-TGCTGGCCT--------------------CTG-TCAT----GGA------------GGTATTGTGCACG------CTCGA---CTT-----CTTCCTTTCTT-CATTTAC--------ACACCTGTGAACTTG-TTGTAGGGTTGTCTCGCAAGA-GACGCTCTATGTC-TTTCTCATAT-ACTCC-AT--AATGTTTATAGAATGT-ACC----TT---------TTTGC--------------------TCTCGTCAGAGA----CAA-AAATAAAGCCT-TTATAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATATGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTG-CGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTCTCAACT-CTCTTTGATTT-CT--TCAAAGGCGAGCTTGGATCTTGGAGGCT-TTGCC---GG-----C-TGTG-AA-GTCGGCTCCTCTGAAAAGCATTGGTAAAGA--CGTAT-----T--GCATGCCTCTGTAATGGAGGTGTGTGCTGGCCTCTGTAATGGAGGTTGGTATCAGGTCGGCCTTTCGGTGTGATAATGATCACCG--TGGCTAG-CTGGCTATTAA-----TGT-CTATGC--CTTACTTGCTACTTTTTCCAT-TGACTTG-GA--AAA-----------AAGCACTTTGA-CCATTTTG Coniophora_arida_AM747504_ ------TGCTTGCAG----------CTG-TGCTGGCTT------------------------TTTC----GGA------------GGCA-TGTGCACG------CTCGA---CTT-----CTCCTTTTCTTACATTTAC--------ACACCTGTGAACCTGTTGGTAGGGCTGCCTCGCAAGAGGACGCTCTATGTC-TTTTTCATAT-ACTCC-TTTGTATGTTGATAGAATGT-ATC----GT---------TTTGC--------------------TCTCGTCAGAGA----CAA-ACACAAAAGTTATTATAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATATGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTG-CGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTCTCAACT-CCCTTTGATTT-CT--TCAAAGGCGAGCTTGGATTGTGGAGGCTTTTGCC---GG-----C-TGCA-AA-GTCGGCTCCTCTGAAATGCATTGGCAAAGG--CGTAT--------GCATA-------------------------------------------------ATAACGGCTTTCGATGTGATAATGATCATCG--TAGCTGG-AATGCTTCACA-----AGT-CTATGC--CCAACCTGC-----TTTCCAT-TCATTTG------GG-----------AAACACTTTGA-CCATTTTG Coniophora_arida_GU187510_ ------TGCTTGCAG----------TTG-TGCTGGCTT------------------------TTTC----GGA------------GGCA-TGTGCACG------CTCGA---CTT-----CTCCTTTTCTTACATTTAC--------ACACCTGTGAACCTGTTGGTAGGGCTGCCTCGCAAGAGGACGCTCTATGTC-TTTTTCATAT-ACTCC-TTTGTATGTTGATAGAATGT-ATC----GT---------TTTGC--------------------TCTCGTCAGAGA----CAA-ACATAAAAGTTAATATAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATATGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTG-CGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTCTCAACT-CCCTTTGATTT-CT--TCAAAGGCGAGCTTGGATTGTGGAGGCT--TGCC---GG-----C-TGCA-AA-GTCGGCTCCTCTGAAATGCATTGGCAAAGG--CGTAT--------GCATA-------------------------------------------------ATAACGGCTTTCGATGTGATAATGATCATCG--TAGCTGG-AATGCTTCACA-----AGT-CTATGC--CCAACCTGC-----TTTCCAT-TCATTTG-G---G-------------AAACACTTTGA-CCATTTTG Coniophora_arida_AM747511_ ------TGCTTGCAG----------YTG-TGCTGGCTT------------------------TTTC----GGA------------GGCA-TGTGCACG------CTCGA---CTT-----CTCCTTTTCTTACATTTAC--------ACACCTGTGAACCTGTTGGTAGGGCTGCCTCGCAAGAGGACGCTCTATGTC-TTTTTCATAT-ACTCC-TTTGTATGTTGATAGAATGT-ATC----GT---------TTTGC--------------------TCTCGTCAGAGA----CAA-ACACAAAAGTTAWTATAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATATGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTG-CGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTCTCAACT-CCCTTTGATTT-CT--TCAAAGGYGAGCTTGGATTGTGGAGGCT?T?GCC---GG-----C-TGCA-AA-GTCGGCTCCTCTGAAATGCATTGGCAAAGG--CGTAT--------GCATA-------------------------------------------------ATAACGGCTTTCGATGTGATAATGATCATCG--TAGCTGG-AATGCTTCACA-----AGT-CTATGC--CCAACCTGC-----TTTCCAT-TCATTTG------GG-----------AAACACTTTGA-CCATTTTG Sedecula_puvinata_Trappe67760 ---------TCGCGG----------TTGTTGCTGGCCT--------------------CCG----A----GGG------------GGCA-TGTGCACG------CTCGAGCACTT--------TCTTTCTT-CATTTAC--------ACACCTGTGAACCTGTTTGTAGGG-TGCCTT-CACT-GG-CACTCTATGTC--TTTTCATAT-ACTCC-ATTGTATGTCGATAGAATGT-ATC-----T---------TTTGC--------------------TCTCGTCAGAGA----CAA-AGAATAAAGTTATTATAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATATGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTG-CGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATCAAATTCTCAACT-CCCTTTGATTTATT--TCAAAGGTGAGCTTGGATGTTGGAGGCT---GCC---GG-----C-TGCA-AA-GTCGGCTCTTCTGAAATGCATTGGCAAAGG--CGTTT--------GCATT-------------------------------------------------CATCGGCCTTTCGGTGTGATAATGATCACCG--GGGCTGG-CTTGCTTATAA-----CAC-CTATGT--CTAATCT------TTTTCCAT-TTGGTTG-G---AAA-----------AAGCTTACTTG-ACAATTTG Leucogyrophana_arizonica_GU187527_ ---------TTGGAG----------TTG-TGCTGGCCT--------------------TTC-----------A------------GGCA-TGTGCACA------CT-------TT-----CTCCTCTTTTC-TCTACAC--------ACACCTGTGCACCTG-TTGTAGG----TCTTTCGGGA------CCTATGTT----TTCATATCACCCC-AGAGTATGTTTACAGAATGTCATTACAATT--------GTTGTC--------------------TGTT-TCACAGT----CAACAAGAGAAATATAATATAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATATGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTG-CGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTCTCAACC-CTTTTTGATTTGTT--TCAAAGATGGGCTTGGATTGTGGAGGTT-TTGCTGTGGA-----TATTCATCC-CTCAGCTCCTCTGAAATGTATTGGCAAAAG---GCGA-----C--GCATG-------------------------------------------------AACGGCTTTTTCGGTGTGATAATGATCACCG--TGGCTGG-AGTGTG-ACAA-----TGC-CTGTGCCTCTAACAAGTTGATGCCTTTGT-TGGCTCT-C------------------AACACTTTTG-AACCTTTG Leucogyrophana_romellii_EU118644_ ------TGATTGGAG----------CTG-TGCTGGCTA--------------------ACC-ACTG----GGT------------AGCA-TGTGCACG------CTT-----CGT-----CGCCTTT-----CTTCCAC--------ACACCTGTGCACCCA-CTGTAGG----TCTCGAGAGAGA----CCTATGTT-TTCATCAC---ACCCC-AACGTATGTTTATAGAATGTAACC----TTTATCAATCATCTGC-------------------TGCTTCGCAAGGA---GCGG-ACGGTGACTATATTATAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATATGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTG-CGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTCTCAAC--CCCTTCGATTAGCT--TCGAA-GTGGGCTTGGACTGTGGGGGCT--TGCTGGTGA-----CCACTGGGTTGTCGGCTCCCCTGAAATGCATCTGCGGTTA---GCGA-----CGCGCATG-------------------------------------------------AATGGCTTTTTCGGTGTGATAATGATCACCGTTTGGCTACAACTGCAACAAA---GTCCT-TTCTGCCTCTAGCTC-------TGTACACGCTAGTCGTGA----------------CAACTCCCTGA-A-ACTTTG Leucogyrophana_olivascens_GU187532_ ------TGAGCTCAG----------TTG-TGCTGGCTT--------------------------------TGT------------CGCA-TGTGCACG------CTGGG---TTT-----GGCCTCCTCCT-CA--CAC--------ACACCTGTGCACACC-ATGTGGGC----CTCTCGGGG------CCTGCGTT-TTCATCAC---ACCCC-AACGCATGTTTATAGAATGTAACCATATTA---------TCTGC-------------------CGCTTCGCGAGGA---GTGGACGATAAGAAATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATATGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTG-CGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTCTCAATT-CCCTTTGATTTGTT--TCGAAGG-GGACTTGGATTGTGGGGGCT--TGCT---GG-CGACCTTTTG-GCCGTCGGCTCCCCTGAAATGCATTGGC-------CGTGTACTGACGTGCATG-------------------------------------------------AATGGCTTTTT-GGCGTGATAATGATCGCCG--TGGTCTGAAGTGCTTTAAATGTCTGGT-GCATGC--CTA-----------CAGCCGT-CGACTAGCGC----------------GACAACTCTTG-AACCTTTG Hygrophoropsis_aurantiaca_AJ419202_ ------GGACTGT----------------TGCTGGCCCTT----------TGGTGACGCTGGATAA----CGG-CTGAACTGACTGGCATCGTGCACG----TTTGCGA--CCTT-----TTTCGATCAAT-AATTCTC-----CACACACCTGTGCACTTG-TTGTAGGC---TTTCGAAAGA---AAGCCTATGTT----TTCACAC-ACACCAAATGTATGTTTATAGAATGT---------C---------TTTAC------AATTATTGAGCGCTTCTTCGAGAAGACGGTCAGTAAATAAAATT--ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATATGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTG-CGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTCTCAACT-CCCTTTGATTTTATTATCGAAGG-GAGCTTGGATAGTGGGT----TTGCT---GG-------CGTTGATCGTCGGCTTTCCTTAAATGCATTGGCAAAGG--CGATG--------GCATG-------------------------------------------------ATAACGTCTTTCGGTGTGATAATGATCGCCG--TGGATGGAAGTGTCCCATT----TCTC-CTGTGCCTATAACCCGTGTCGTTTGTTGC-TTCATTGTGATGAAT-----------AAATATAC-----ACTCTTG Hygrophoropsis_aurantiaca_HF951530_ ------GGACTGT----------------TGCTGGTCTTT----------CGGTGACGCTGGATAA----CGG-CCGAACTGACTGACATTGTGCACG----TTTGTGA---CTT-----TTTCGATCAATAAATTCTC---CCAACACACCTGTGCACTTG-TTGTAGGC---TTTCGAAAGA---AAGCCTATGTT----TTCACAC-ACACCTAATGTATGTCCATAGAATGT--------CT---------TTTAC------AATTATTGAGCGCTTCTTCGAGAAGATGGTCAGTAAATAAAACT--ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATATGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTG-CGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTCTCAACT-CCTTTTGATTTCGTTATCGAAAG-AAGCTTGGATAGTGGGT----TTGCT---GG-------TGTC-ACCATCAGCTTTCCTTAAATGCATTGGCAAAGG--CGATG--------GCACG-------------------------------------------------ATAACGTCTTTCGGTGTGATAATGATCGCCG--TGGATGGAAGTGTCCTTGT----TCTC-CTATGCCTATAACCCGTGTCGTTTGTTGC-TTCATTGCGA--TGA-----------ATACACTCTGA-ACCTTTTG Hygrophoropsis_aurantiaca_HF951531_ ------GGACTGT----------------TGCTGGTCT----------TTCGGTGACGCTGGATAA----CGGCCGAACCCGACTGACATTGTGCACG----TTTGTGA---CTT-----TTTCGATCAATAAATTCTC--CAACACACACCTGTGCACTTG-TTGTAGGC---TTTCGAAAGA---AAGCCTATGTT----TTCACAC-ACACCTAATGTATGTCTATAGAATGT--------CT---------TTTAC------AATTATTGAGCGCTTCTTCGAGAAGATGGTCAGTAAATAAAACT--ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATATGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTG-CGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTCTCAACT-CCTTTTGATTTCGTTATCGAAAG-AAGCTTGGATAGTGGGT----TTGCT---GG-------TGTC-ACCATCAGCTTTCCTTAAATGCATTGGCAAAGG--CGATG--------GCACG-------------------------------------------------ATAACGTCTTTCGGTGTGATAATGATCGCCG--TGGATGGAAGTGTCCTTGT-----TCTCCTATGCCTATAACCCGTGTCGTTTGTTGC-TTCATTGCGA--TGA-----------ATACACTCTGA-ACCTTTTG Hygrophoropsis_aurantiaca_AY854067_ ------GGACTGT----------------TGCTGGTCT----------TTCGGTGACGCTGGATAA----CGGCCGAACCCGACTGACATTGTGCACG----TTTGTGA---CTT-----TTTCGATCAATAAATTCTC--CAACACACACCTGTGCACTTG-TTGTAGGC---TTTCGAAAGA---AAGCCTATGTT----TTCACAC-ACACCTAATGTATGTCTATAGAATGT--------CT---------TTTAC------AATTATTGAGCGCTTCTTCGAGAAGATGGTCAGTAAATAAAACT--ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATATGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTG-CGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTCTCAACT-CCTTTTGATTTCGTTATCGAAAG-AAGCTTGGATAGTGGGT----TTGCT---GG-------TGTC-ACCATCAGCTTTCCTTAAATGCATTGGCAAAGG--CGATG--------GCACG-------------------------------------------------ATAACGTCTTTCGGTGTGATAATGATCGCCG--TGGATGGAAGTGTCCTTGT-----TCTCCTATGCCTATAACCCGTGTCGTTTGTTGC-TTCATTGCGA--TGA-----------ATACACTCTGA-ACCTTTTG Hygrophoropsis_aurantiaca_AJ419201_ ------GGACTGT----------------TGCTGGTCT----------TTCGGTGACGCTGGATAA----CGGCCGAACCCGACTGACATTGTGCACG----TTTGTGA---CTT-----TTTCGATCAATAAATTCTC--CAACACACACCTGTGCACTTG-TTGTAGGC---TTTCGAAAGA---AAGCCTATGTT----TTCACAC-ACACCTAATGTATGTCTATAGAATGT--------CT---------TTTAC------AATTATTGAGCGCTTCTTCGAGAAGATGGTCAGTAAATAAAACT--ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATATGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTG-CGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTCTCAACT-CCTTTTGATTTCGTTATCGAAAG-AAGCTTGGATAGTGGGT----TTGCT---GG-------TGTC-ACCATCAGCTTTCCTTAAATGCATTGGCAAAGG--CGATG--------GCACG-------------------------------------------------ATAACGTCTTTCGGTGTGATAATGATCGCCG--TGGATGGAAGTGTCCTTGT-----TCTCCTATGCCTATAACCCGTGTCGTTTGTTGC-TTCATTGCGA--TGA-----------ATACACTCTGGAACCTTTTG Hygrophoropsis_rufa_HF951529_ ------AGACTGT----------------TGCTGGCCTTTTGTTGATCGATGGTGACGCTGGATAACGGCTGAACCGTTTGTTTTGGCATTGTGCACG----TTTGTGA--CTTT-----TCCCTATCGATAGCTTTCTCCCAACCCACACCTGTGCACTCG-TTGTAGGCTCTTTTTGAAAGAAAAGGGCCTATGT--TTTTCTACAC-ACCCCATTTGTATGTTTATAGAATGT--C-----TT---------TTTAC------GATTACCGAGCGCTTCTTCGAGAAGATGGTCGGTAAGTAAAGTTA-ATACAACTTTCAGCAATGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATATGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTCTCAACT-CCCTTTGGTTTTGTTATCGAAGG-GGGCTTGGATAGTGGGT----TTGCCGGTGG--TTGCTAATA-ACCCTCGGCTTTCCTTAAATGCATTGGCAAAGA--CGAAG--------GCATG-------------------------------------------------ATAACGTCTTTCGGTGTGATAATGATCGCCG--TGGATGGAAGTGAC-CTAG---TTCGTACTGTGCCTATAACCCCTTGCG-TTGTTGC-TGCCTTGTGC--AAGTGACGGTGCTTAACTTTAATGA-ACCTTTTG Hydnomerulius_pinastri_GU187523_ AGGTGAAGTTTGGAGAGTGTAGAGATTGTCGCTGGCCT--------------------CCGGAAAC----GGG------------GGCA-TGTGCACGTCTTTCCTCGA---CTTAGTCCCTGCTCTCTTTCCTTTCGCAAACCTCAACACCTGTGCACCTA-TTGTAGGG----ACCGAAAGG----GACCTATGTT----TTCATCTCGCCCCAAACGTATGTCTATAGAATGT-AT-----TT---------AATGCGTCGACCGGCCTGGCTAACGCCTTGTTGGCGA----CGGTAAACTA------TTACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTG-CGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTTAATTCTCAACCACGCTTTGATTGATT--TCGAGGCATGGCTTGGACTTTGGGAGCTGCTGGC---GA-----CCTTTGGGACGTCGGCTCTCCTTAAAAGCATTAGCAAAGG--CGAGT-----CTAGCATG-------------------------------------------------AAT--GGCCTTCGGCGTGATAATGATCGTCG--TGGCTAG-AGTGCTGGGCATGAATTGT-CTATGCTTCTAATCG-----CTGTTTCAC-TTCGGTG-GA--CAG-----------AACTCTAATGA---AACTTG Serpula_incrassata_EU429519_ ------TG-----GG----------TTG-TGCTGGCCA--------------------CCT-TTATCTTGGGG------------GGCA-TGTGCACG------CTTGGT--CTT-----CTTTTCTCTTT-CACACAC--------ACACCAGTGCACCTG-CCGTAGGC----CTTTCGAGG------CTTATGTC--TTTTCATCACACGCCGAC-GTATGTCTATCGAATGT--------CT---------TTTGA----------------------------AACA-----AATAAATAAAAGTTTATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAATTGCGATACGTAATGTGAATTGCAGATTTTCAGTGAATCATCGAATCTTTGAACGCACCTTG-CGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTAAATTCTCAAC--CCCTCCAATTCGTT--TTGGACGTGGGCTTGGACTGTGGGGGTT--TGCC---GGGTGACCTTGTG-TG-GTCGGCTCTCCTGAAATTCATTGGCAAGGGACTGTGT--------GCGTG-----------------------------------------------------TTGCC-TCGGCGTGATAATGATCGTCG--TGTCT-GGCGTGCAAGTAG-GAGTCCC-TTTTGCCCACAACCG-------TCGCCGC-TCGGGTG-----ACA-----------ATGCTTCTTTG-AAATTTTG ; END; BEGIN TREES; Title Sedecula_ITS_FINAL_analysis; LINK Taxa = Taxa; TRANSLATE 1 Coniophora_marmorata_AM946632_, 2 Coniophora_opuntiae_FJ790314_, 3 Coniophora_olivacea_AM747533, 4 Coniophora_olivacea_AM747520_, 5 Coniophora_olivacea_AM747528_, 6 Coniophora_olivacea_AM747527_, 7 Coniophora_olivacea_AM293005_, 8 Coniophora_olivacea_AM747530_, 9 Coniophora_puteana_EU722763_, 10 Coniophora_puteana_AM293064_, 11 Coniophora_puteana_AM293061_, 12 Coniophora_puteana_AJ419198_, 13 Coniophora_puteana_GU187520_, 14 Coniophora_puteana_AM293047, 15 Coniophora_puteana_AM293082_, 16 Coniophora_puteana_AM293079, 17 Coniophora_puteana_AM293077_, 18 Coniophora_puteana_AM293007_, 19 Coniophora_puteana_AY736018, 20 Coniophora_arida_AM747504_, 21 Coniophora_arida_GU187510_, 22 Coniophora_arida_AM747511_, 23 Sedecula_puvinata_Trappe67760, 24 Leucogyrophana_arizonica_GU187527_, 25 Leucogyrophana_romellii_EU118644_, 26 Leucogyrophana_olivascens_GU187532_, 27 Hygrophoropsis_aurantiaca_AJ419202_, 28 Hygrophoropsis_aurantiaca_HF951530_, 29 Hygrophoropsis_aurantiaca_HF951531_, 30 Hygrophoropsis_aurantiaca_AY854067_, 31 Hygrophoropsis_aurantiaca_AJ419201_, 32 Hygrophoropsis_rufa_HF951529_, 33 Hydnomerulius_pinastri_GU187523_, 34 Serpula_incrassata_EU429519_; TREE Sedecula_ITS_FINAL = ((33:0.15966419,34:0.17138948):0.011640385,((((27:0.00957334,(28:0.0022823,(31:1.0E-8,(30:1.0E-8,29:1.0E-8):1.0E-8):1.0E-8):0.0355635):0.01638124,32:0.07065059):0.12490952,(25:0.09390142,26:0.08982059):0.0600583):0.01457975,(24:0.12992056,((1:0.03669268,2:0.02156536):0.00738689,((8:0.00467054,(4:0.00424705,(3:1.0E-8,((6:0.00453815,5:1.0E-8):1.0E-8,7:0.00683654):1.0E-8):0.00637473):0.00307223):0.00796577,(((21:0.00272109,(22:1.0E-8,20:1.0E-8):0.00170774):0.05103364,23:0.0572605):0.0166684,((((((16:1.0E-8,19:1.0E-8):1.0E-8,(18:1.0E-8,(17:1.0E-8,15:0.00225185):1.0E-8):1.0E-8):1.0E-8,13:0.00684097):0.00223506,11:1.0E-8):1.0E-8,(12:1.0E-8,(10:0.0022358,14:1.0E-8):1.0E-8):1.0E-8):1.0E-8,9:0.00223748):0.04151796):0.00347126):1.0E-8):0.06252426):0.02537653):0.011640385); END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 793; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 793; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 793; EXSET * UNTITLED = 1 - 29 39 - 85 99 - 120 132 140 - 147 237 - 255 261 - 280 293 - 296 531 - 557 588 - 589 595 - 602 608 - 656 688 - 689 709 - 793; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 2629802505312537141; tell It; setDefaultOrder 0 1 3 4 5 6 7 8 13 14 15 16 17 19 20 21 22 23 24 10 2 11 38 33 34 43 32 40 29 41 42 37 35 31; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2723756022578337123; checksumv 0 2 3276078131 null; endTell; getWindow; tell It; suppress; setResourcesState false false 244; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1458 971; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #2629802505312537141 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #2629802505312537141; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1214 904; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; showTrees 0 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 1; getWindow; tell It; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1214 904; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TreesList.TreesListWindow.ibeam; endTell; endTell; showWindow; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #2629802505312537141 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1612.1421091815972.805819248836806280; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1214 904; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #2723756022578337123 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 188; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1214 904; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool blockMover; endTell; setTool blockMover; colorCells #mesquite.charMatrices.ColorByState.ColorByState; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.ColorByExcluded.ColorByExcluded; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight on; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; showCharacters #2723756022578337123 #mesquite.lists.CharacterList.CharacterList; tell It; setData 0; getWindow; tell It; newAssistant #mesquite.lists.CharListInclusion.CharListInclusion; newAssistant #mesquite.stochchar.CharListProbModels.CharListProbModels; newAssistant #mesquite.lists.CharListCodonPos.CharListCodonPos; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1214 904; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.CharListAnnotPanel.CharListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; endTell; end;