#NEXUS [written Mon Jan 12 14:23:35 CET 2015 by Mesquite version 2.75 (build 564) at DD21654/172.30.136.127] BEGIN TAXA; TITLE whole_sequence; DIMENSIONS NTAX=11; TAXLABELS Labidus_praedator_Cac1 Labidus_praedator_Cac2 Labidus_praedator_Tap Labidus_praedator_TC Labidus_coecus Labidus_spininodis Eciton_burchellii Eciton_vagans Eciton_mexicanum Nomamyrmex_esenbeckii Dorylus_nigricans ; END; BEGIN CHARACTERS; TITLE whole_sequence; LINK TAXA = whole_sequence; DIMENSIONS NCHAR=1387; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Labidus_praedator_Cac1 TTTTATGATTGGAGGATTTGGAAACTTTCTTGTACCATTAATATTAGGTACTCCTGATATAGCATACCCTCGTATAAATAATATAAGATTTTGACTTCTCCCTCCTTCATTAATACTATTAATTATAGGAAGATATGTAGGAACAGGAGCTGGTACCGGATGAACCGTTTACCCTCCTTTAGCAACTAATACCTATCATAATGGCCCTTCAATTGATTTAACTATCTTTTCACTTCATATTGCAGGTATATCATCAATTATAGGTGCTATTAATTTTATTTCTACTATCCTTAATATACATCATAAAAAAATATCATTAGATAAAATTCCACTCATAGTATGAGCAATTTTAGTAACTGCAATTCTTTTATTAAGTTCACTACCAGTTTTAGCAGGAGCAATTACTATACTTCTAACTGACCGAAATTTAAACACAACTTTTTTTGATCCTGCTGGAGGAGGTGACCCAATTCTTTATCAACATTTATTTT?????????????????????????????????????????GGATTTGGAATAATTTCTCATATTATTACTTCAGAAAGAGGTAAAAAAGAAACATTTGGAGCTGTAGGTATAATCTATGCAATTTTATCTATTGGATTATTAGGATTTATTGTATGAGCTCATCATATATTTACTGTTGGAATAGACGTTGATACTCGAGCATATTTTACTTCCGCAACAATAATTATTGCCATCCCAACAGGAATTAAAGTATTTAGATGAATTACAACTTTATATGGTACAAAAATTAATTATACACCTACACTTTTATGATCTATAGGTTTTATTTTTCTATTTACAATAGGAGGCTTGACTGGAGTTATATTATCTAACTCATCAATTGATATTATTCTCCGGGGAGATTCATCGTCAGCGGCGC-TGGCTTCGCGTCGGTGGGCGATGTCCCGCGGTGCC-----GCCTCGTCGCGGCTCCC----GCGCGGGCACGCTACCGTGCGCCGATGTCCGGCGAACGTCGTCGTGCACTTCTCCCCTAGTAGGACGTCGCGACCCGCTGGGTGTCGGTCTACGGCCCGGGGCTGAGGTGACTGCCGCGCG--GCACGTAAAA-CTGC--GCGCGGCAAACTCCCGGTCGCCCGGCCGACTGCCCGGCGGTATGC-GCTACGGTATCAGGCCGCGCCTCGCGCGCGTCGAGCCCGTCGCAAGCGAGCGCCACGGTACCCGGAGGTACGGACCCAGC-GCCGTCCCCG--GTCCTGGCCCGCTGC-TGGCTGC-CTCGTACGGTGTAACCTTCGACCGGCCT-GAAGTCC--CGCGCCCCCGTAACACGGGGCGCG----GAGGGATACCGGTCGGCGACGCTACTGCTTTGGGTACTCTCAGGA Labidus_praedator_Cac2 ??????????????????????????????????????????????????????????????CATACCCTCGTATAAATAATATGAGATTTTGACTACTCCCCCCATCATTAATATTACTAATTATAAGTAGATATGTAGGAACAGGTACTGGTACAGGATGAACAGTTTATCCACCATTAGCAGCTAATACCTATCATAACGGACCTTCAATTGACTTAACTATTTTTTCCCTTCATATTGCAGGGATATCATCAATCATAGGGGCCATTAATTTTATCTCTACTATTCTTAATATACATCATAAAAAAATTTCATTAGATAAAATCCCTCTTATAGTTTGAGCTATTCTAGTGACCGCAATTCTTTTATTAAGCTCACTACCAGTATTAGCAGGAGCAATCACTATACTTTTAACTGACCGAAATCTTAATACAACATTTTTCGACCCTGCAGGAGGAGGAGACCCTATTCTTTACCAACATTTATTTTGATTTTTTGGCCATCCAGAAGTATATATTCTTATTATTCCTGGATTCGGTATAATCTCTCATATCATCACCTCAGAAAGAGGCAAAAAAGAAACATTTGGGGCTATTGGAATAATTTACGCTATTCTATCAATTGGTATACTAGGATTTATTGTATGAGCACATCATATATTTACTGTAGGAATAGATGTAGATACCCGAGCTTATTTTACTTCTGCTACTATAATTATTGCTATCCCTACTGGAATTAAAGTATTTAGATGAATTACAACTTTATATGGAACAAAAATCAATTATACCCCTACTCTTTTATGGTCAATAGGGTTTATTTTTTTATTTACAATAGGAGGACTAACAGGAGTTATATTATCAAATTCATCAATTGATATTATCCTTCGGGGAGATTCATCGTCAGCGGCGC-TGGCTTCGCGTCGGTGGGCGATGTCCCGCGGTGCC-----GCCTCGTCGCGGCTCCC----GCGCGGGCACGCTGCCGCGCGCCGATGTCCGGCGAACGTCGTCGTGCACTTCTCCCCTAGTAGGACGTCGCGACCCGCTGGGTGTCGGTCTACGGCCCGGGGCTGAGGCGACTGCCGCGCG--GCACGTAAAAACTGC--GCGCGGCAAACTCCCGGTCGCCCGGCCGACTGCCCGGCGGTATGC-GCTACGGTATCAGGCCGCGCCTCGCGCGCGTCGAGCCCGTCGCAAGCGAGCGCCACGGTACCCGGAGGTACGGACCCAGC-GCCGTCCCCG--GTCCTGGCCCGCTGC-TGGCTGC-CTCGCACGGTGTAACCTTCGACCGGCCTCGAGGTCCCGCGGCCCGCGGAAACGCGGGCCCGC---GGGGTGATACCGGTCGGCGACGCTACTGCTTTGGGTACTCTCAGGA Labidus_praedator_Tap TTTTATAATCGGAGGATTTGGAAATTATCTTGTACCATTAATGTTAGGAACCCCTGATATAGCATACCCTCGTATAAATAATATGAGATTTTGACTACTCCCCCCATCATTAATATTACTAATTATAAGTAGATATGTAGGAACAGGTACTGGTACAGGATGAACAGTTTATCCACCATTAGCAGCTAATACCTATCATAACGGACCTTCAATTGACTTAACTATTTTTTCCCTTCATATTGCAGGGATATCATCAATCATAGGAGCCATTAATTTTATCTCTACTATTCTTAATATACATCATAAAAAAATTTCATTAGATAAAATCCCTCTTATAGTTTGAGCTATTCTAGTGACCGCAATTCTTTTATTAAGCTCACTACCAGTATTAGCAGGAGCAATCACTATACTTTTAACTGACCGAAATCTTAATACAACATTTTTCGACCCTGCAGGAGGAGGAGACCCTATTCTTTACCAACATTTATTTTGATTTTTTGGTCATCCAGAAGTATATATTCTTATTATTCCTGGATTCGGTATAATCTCTCATATCATCACCTCAGAAAGAGGCAAAAAAGAAACATTTGGGGCTATTGGAATAATTTACGCTATTTTATCAATTGGTATACTAGGATTTATTGTATGAGCACATCATATATTTACTGTAGGGATAGATGTAGATACCCGAGCTTATTTTACTTCTGCTACTATAATTATTGCTATCCCTACTGGAATTAAAGTATTTAGATGAATTACAACTTTATATGGAACAAAAATCAATTATACCCCTACTCTTTTATGGTCAATAGGGTTTATTTTTTTATTTACAATAGGAGGACTAACAGGAGTTATATTATCAAATTCATCAATTGATATTATCCTTCGGGGAGATTCATCGTCAGCGGCGC-TGGCTTCGCGTCGGTGGGCGATGTCCCGCGGTGCC-----GCCTCGTCGCGGCTCCC----GCGCGGGCACGCTGCCGCGCGCCGATGTCCGGCGAACGTCGTCGTGCACTTCTCCCCTAGTAGGACGTCGCGACCCGCTGGGTGTCGGTCTACGGCCCGGGGCTGAGGCGACTGCCGCGCG--GCACGTAAAAACTGC--GCGCGGCAAACTCCCGGTCGCCCGGCCGACTGCCCGGCGGTATGC-GCTACGGTATCAGGCCGCGCCTCGCGCGCGTCGAGCCCGTCGCAAGCGAGCGCCACGGTACCCGGAGGTACGGACCCAGC-GCCGTCCCCG--GTCCTGGCCCGCTGC-TGGCTGC-CTCGCACGGTGTAACCTTCGACCGGCCTCGAGGTCCCGCGGCCCGCGGAAACGCGGGCCCGC---GGGGTGATACCGGTCGGCGACGCTACTGCTTTGGGTACTCTCAGGA Labidus_praedator_TC TTTTATAATCGGAGGATTTGGAAATTATCTTGTACCATTAATGTTAGGAACCCCTGATATAGCATACCCTCGTATAAATAATATGAGATTTTGACTACTCCCCCCATCATTAATATTACTAATTATAAGTAGATATGTAGGAACAGGTACTGGTACAGGATGAACAGTTTATCCACCATTAGCAGCTAATACCTATCATAACGGACCTTCAATTGACTTAACTATTTTTTCCCTTCATATTGCAGGGATATCATCAATCATAGGGGCCATTAATTTTATCTCTACTATTCTTAATATACATCATAAAAAAATTTCATTAGATAAAATCCCTCTTATAGTTTGAGCTATTCTAGTGACCGCAATTCTTTTATTAAGCTCACTACCAGTATTAGCAGGAGCAATCACTATACTTTTAACTGACCGAAATCTTAATACAACATTTTTCGACCCTGCAGGAGGAGGAGACCCTATTCTTTACCAACATTTATTTTGATTTTTTGGTCATCCAGAAGTATATATTCTTATTATTCCTGGATTCGGTATAATCTCTCATATCATCACCTCAGAAAGAGGCAAAAAAGAAACATTTGGGGCTATTGGAATAATTTACGCTATTCTATCAATTGGTATACTAGGATTTATTGTATGAGCACATCATATATTTACTGTAGGGATAGATGTAGATACCCGAGCTTATTTTACTTCTGCTACTATAATTATTGCTATCCCTACTGGAATTAAAGTATTTAGATGAATTACAACTTTATATGGAACAAAAATCAATTATACCCCTACTCTTTTATGGTCAATAGGGTTTATTTTTTTATTTACAATAGGAGGACTAACAGGAGTTATATTATCAAATTCATCAATTGATATTATCCTTCGGGGAGATTCATCGTCAGCGGCGC-TGGCTTCGCGTCGGTGGGCGATGTCCCGCGGTGCC-----GCCTCGTCGCGGCTCCC----GCGCGGGCACGCTGCCGCGCGCCGATGTCCGGCGAACGTCGTCGTGCACTTCTCCCCTAGTAGGACGTCGCGACCCGCTGGGTGTCGGTCTACGGCCCGGGGCTGAGGCGACTGCCGCGCG--GCACGTAAAAACTGC--GCGCGGCAAACTCCCGGTCGCCCGGCCGACTGCCCGGCGGTATGC-GCTACGGTATCAGGCCGCGCCTCGCGCGCGTCGAGCCCGTCGCAAGCGAGCGCCACGGTACCCGGAGGTACGGACCCAGC-GCCGTCCCCG--GTCCTGGCCCGCTGC-TGGCTGC-CTCGCACGGTGTAACCTTCGACCGGCCTCGAGGTCCCGCGGCCCGCGGAAACGCGGGCCCGC---GGGGTGATACCGGTCGGCGACGCTACTGCTTTGGGTACTCTCAGGA Labidus_coecus TTTTATAATTGGGGGATTTGGAAATTACCTTGTTCCCTTAATGTTAGGAACACCCGATATAGCATACCCTCGTATAAATAATATAAGATTTTGACTTTTACCTCCCTCACTAATACTTTTAATTATAGGAAGATATGTAGGAACAGGAGCTGGAACAGGATGAACAGTTTACCCACCTTTAGCTGCTAATACTTACCATAATGGTCCCTCAATTGATTTAACCATTTTTTCATTACATATTGCAGGAATATCATCAATTATAGGAGCAATCAATTTTATTTCTACAATTCTTAATATACACCATAAAAAAGTTTCTCTCGATAAAATTCCTCTTTTAGTTTGAGCAATTTTAGTGACTGCCATTCTTCTATTAAGATCCCTCCCAGTTTTAGCAGGAGCAATTACTATACTATTAACTGATCGAAATCTAAATACAACCTTCTTTGACCCTGCTGGTGGAGGAGATCCAATTCTTTACCAACATTTATTTTGATTTTTTGGCCACCCAGAAGTTTATATTCTCATTATTCCAGGATTCGGCATAATTTCTCATATTATTACTTCAGAAAGAGGAAAAAAAGAAACATTTGGGGCTATTGGAATAATTTATGCTATCCTATCAATCGGWCTTTTAGGATTTATTGTTTGAGCTCATCATATATTTACAGTAGGAATAGATGTAGACACTCGAGCATACTTTACTTCAGCTACTATAATTATTGCAATTCCTACAGGAATTAAAGTTTTTAGATGAATYACAACTCTATACGGAACAAAAATTAATTACACCCCAACTCTTTTATGATCTTTAGGATTTATTTTTTTATTCACTATAGGAGGCTTAACTGGAGTAATACTCTCTAATTCMTCAATTGAYATTATTCTTCGGGGAGATTCATCGTCAGCGGCGC-TGGCTTCGCGTCGGTGGGCGATGTCCCGCGGTGCC-----GCCTCGTCGCGGCTCCC----GCGCGGGCACGCTACCGTGCGCCGATGTCCGGCGAACGTCGTCGTGCACTTCTCCCCTAGTAGGACGTCGCGACCCGCTGGGTGTCGGTCTACGGCCCGGGGCTGAGGCGACTGCCGCGCG--GCACGTAAAA-CTGC--GCGCGGCAAACTCCCGGTCGCCCGGCCGACTGCCCGGCGGTATGC-GCTACGGTATCAGGCCGCGCCTCGCGCGCGTCGAGCCCGTCGCAAGCGAGCGCCACGGTACCCGGAGGTACGGACCCAGC-GCCGTCCCCG--GTCCTGGCCCGCTGC-TGGCTGC-CTCGTACGGTGTAACCTTCGACTGGCCT-GAAGTCC--CGCGCCCCGGTAACACGGGGCGCG----GAGGGATACCGGTCGGCGACGCTACTGCTTTGGGTACTCTCAGGA Labidus_spininodis ATTTATAATCGGAGGATTTGGTAATTTCCTAGTCCCTTTAATGTTAGGGACTCCTGATATAGCATATCCTCGTATAAATAACATAAGATTTTGATTATTACCACCCTCATTAATATTATTAATCATAAGAAGATATGTAGGAACCGGAGCCGGAACAGGATGAACCGTATACCCCCCATTAGCAACCAATACATATCATAATGGTCCTTCAATTGATTTAACAATCTTTTCTCTTCATATCGCAGGAATATCCTCTATTATAGGAGCCATTAATTTTATTTCAACTATTCTTAATATACATCATAAAAAAGTATCATTAGATAAAATCCCACTTATAGTTTGAGCTATTTTAGTAACTGCTATCCTACTATTGAGATCCTTACCTGTATTAGCAGGAGCTATTACTATACTTTTAACAGATCGAAATCTAAATACAACCTTCTTTGATCCTGCAGGAGGTGGAGATCCTATTCTTTATCAACACTTATTTTGATTTTTCGGTCACCCCGAAGTTTATATTCTTATTATCCCAGGATTCGGAATAATCTCTCACATTATTACTTCAGAAAGAGGAAAAAAAGAAACATTTGGTGCTATTGGAATAATCTATGCTATTCTATCAATTGGATTATTAGGATTTATCGTATGAGCTCATCATATATTTACAGTAGGAATAGATGTTGACACTCGAGCTTACTTTACTTCAGCCACAATAATCATTGCTATCCCAACAGGAATTAAAGTTTTTAGATGAATTACAACTTTATATGGTACAAAAATTAATTATACACCTACACTATTATGAGCAATAGGATTTATTTTTTTATTTACTATAGGAGGTTTAACAGGAGTAATATTATCAAATTCATCTATTGATATTATTCTTCGGGGAGATTCATCGTCAGCGGCGC-TGGCTTCGCGTCGGTGGGCGATGTCCCGCGGTGCC-----GCCTCGTCGCGGCTCCC----GCGCGGGCACGCTACCGTGCGCCGATGTCCGGCGAACGTCGTCGTGCACTTCTCCCCTAGTAGGACGTCGCGACCCGCTGGGTGTCGGTCTACGGCCCGGGGCTGAGGTGACTGCCGCGCG--GCACGTAAAA-CTGC--GCGCGGCAAACTCCCGGTCGCCCGGCCGACTGCCCGGCGGTACGC-GCTACGGTATCAGGCCGCGCCTCGCGCGCGTCGAGCCCGTCGCAAGCGAGTGCCACGGTACCCGGAGGTACGGACCCAGC-GCCGTCCCCG--GTCCTGGCCCGCTGC-TGGCTGC-CTCGCACGGTGTAACCTTCGACCGGCCT-GAAGTCC--CGCGCCCCCGTAACACGGGGCGCG----GAGGGATACCGGTCGGCGACGCTACTGCTTTGGGTACTCTCGGGA Eciton_burchellii TTTTATAATTGGAGGATTTGGAAATTTCTTAGTTCCATTAATACTTGGGACTCCAGATATGGCATACCCTCGAATAAACAATATAAGATTTTGACTTCTGCCCCCCTCATTAATATTACTAATTATAGGAAGTTACGTAGGAACAGGGGCAGGGACAGGATGAACAGTATACCCCCCATTAGCTGCTAATACCTACCATAATGGCCCTTCTATTGATTTAACTATTTTTTCCTTACATATCGCAGGGATATCATCAATTTTAGGAGCAATTAATTTTATCTCTACGATTCTTAATATACACCATAAAAAAATTTCTTTAGACAAAATACCTCTATTAGTTTGAGCTATTTTAGTTACTGCTATTCTTCTATTAACCTCCCTCCCAGTTTTAGCAGGAGCTATCACTATACTTTTAACAGATCGTAACTTAAACACCACATTCTTTGATCCTGCTGGAGGAGGAGACCCCATTTTATACCAACATTTATTTTGATTTTTTGGACACCCAGAAGTATATATTCTAATCATCCCAGGATTTGGAATAATTTCACACATTATTACATGTGAAAGTGGAAAAAAAGAAACTTTCGGAGCCATTGGTATAATTTATGCTATTTTATCAATTGGTTTATTAGGATTTATTGTTTGAGCCCATCATATATTTACTGTAGGAATAGATGTTGATACCCGAGCTTATTTTACCTCAGCAACAATAATTATTGCCATTCCTACCGGTATTAAAGTCTTTAGGTGAATTACTACTCTTCACGGAACAAAAGTTAACTATACTCCAACCTTACTTTGATCATTAGGATTCATTTTTTTATTTACTATAGGAGGATTAACTGGAATTATACTATCAAATTCCTCTATTGATATTATCCTTCGGGGAGATTCATCGTCAGCGGCGCCTGGCTTCGCGTCGGTGGGCGATGTCCCGCGGTGCC-----GCCTCGTCGCGGCTCCC----GCGAGGGCACGCTACCGTGCGCCGATGTCCGGCGA-CGTCGTCGTGCACTTCTCCCCTAGTAGGACGTCGCGACCCGCTGGGTGTCGGTCTACGGCCCGGGGCTGAGGTGACTGCCGCGCC--GCACGTCAAA-CTGC--GCCCGGCAAACTCCCGGCTGCCCGGCCGACTGCCCGGCGGTATAC-GCAACGGTATCAGGCCGCGCCTCGCGCGCGTCGAGCCCGTCGCAAGCGAGCGCCACGGTACCCGGAGGTACGGACCCAGC-GCCGTCCCCG--GTCCTGGCCCGCTGC-TGGCAGC-CTCGTACGGTGTAACCTTCGACTGGCCT-GGAGTCCCCCGCGCCCCCGTAACACGGGGCAAG---GGGGGGATACCGGTCGGCGACGCTACTGCTTTGGGTACTCTCAGGA Eciton_vagans TTTTATAATTGGAGGATTTGGAAATTTTTTAATCCCCCTAATACTCGGAACACCTGATATAGCCTATCCACGTATAAATAATATAAGATTTTGACTTTTACCCCCTTCATTAATATTATTAATTATAGGAAGATACGTAAGAACTGGGGCAGGCACAGGATGAACAGTATACCCCCCATTAGCTTCAAACACATATCATAGAGGTCCATCTATTGACTTAACTATTTTTTCATTACATATTGCAGGAATATCATCTATTTTAGGAGCAATTAATTTTATTTCTACAATCCTTAATATACATCATAAAAAAATATCATTAGATAAAATACCATTATTAGTTTGATCTATTTTAGTAACAGCTATTCTTTTATTAACATCCTTACCAGTTTTAGCGGGGGCAATTACTATACTTTTAACAGATCGAAATTTAAATACAACATTCTTTGATCCAGCTGGAGGAGGTGACCCTATCTTATACCAACATTTATTTTGATTTTTTGGTCATCCTGAAGTTTACATTCTTATTATTCCTGGATTTGGAATAATTTCTCATATTATTACATGTGAAAGAGGCAAAAAAGAAACTTTTGGCGCTATTGGAATAATTTATGCAATTATATCAATCGGATTATTAGGATTTATCGTATGAGCTCATCATATATTTACAGTAGGAATAGATGTTGATACTCGAGCTTATTTTACTTCTGCTACTATAATTATTGCTATTCCTACAGGAATTAAAGTTTTTAGATGAATTACTACTYTATACGGWACAAAAATTAATTAYACCCCAACTTTACTTTGATCTTTAGGATTTATTTTTTTATTCACYATAGGAGGTTTAACAGGAATTATACTATCAAATTCATCTATTGATATCATTCTTCGGGGAGATTCATCGTCAGCGGCGC-TGGCTTCGCGTCGGTGGGCGATGTCCCGCGGTGCC-----GCCTCGTCGCGGCTCCC----GCGCGGGCACGCTACCGTGCGCCGATGTCCGGCGAACGTCGTCGTGCACTTCTCCCCTAGTAGGACGTCGCGACCCGCTGGGTGTCGGTCTACGGCCCGGGGCTGAGGTGACTGCCGCGCG--GCACGTAAAA-CTGC--GCGCGGCAAACTCCCGGTCGCCCGGCCGACTGCCCGGCGGTATAC-TCAACGGTATCAGGCCGCGCCTCGCGCGCGTCGAGCCCGTCGCAAGCGAGCGCCACGGTACCCGGAGGTACGGACCTAGC-GCCGTCCCCG--GTCCTGGCCCGCTGC-TGGCAGC-CTCGTACGGTGTAACCTTCGACTGGCCT-GAAG--------------------------------------ATACCGGTCGGCGACGCTACTGCTTTGGGTACTCTCAGGA Eciton_mexicanum TTTCATAATTGGAGGATTTGGTAATTTTTTAGTACCTTTAATACTTGGCACACCTGATATAGCTTACCCTCGTATAAATAATATAAGATTTTGACTTCTTCCCCCTTCACTAATATTATTAATGATAGGTAGATATGTTGGCACTGGAGCAGGAACAGGATGAACAGTATACCCTCCACTTGCCTCAAGTATATATCATAATGGCCCATCTATTGATTTAACTATTTTTTCTCTTCATATTGCTGGAATATCCTCAATTTTAGGAGCAATCAATTTTATTTCTACTATCCTTAATATACACCATAAAAGAATTTCATTAGATAAAATTCCTCTATTAGTTTGAGCCATTCTAGTTACCGCTATCCTTTTATTAACATCATTACCAGTTCTAGCAGGAGCTATCACGATACTTTTAACAGACCGAAATCTCAATACAACCTTCTTTGATCCAGCAGGAGGAGGAGATCCTATTCTATACCAACACTTATTTTGATTTTTTGGACACCCTGAAGTTTATATTCTCATTATCCCAGGATTTGGAATAATCTCTCATATTATTACATGTGAAAGAGGTAAAAAAGAAACCTTTGGAGCTATCGGTATAATTTACGCTATTATATCAATTGGACTATTAGGATTTATTGTATGAGCTCATCATATATTTACTGTAGGAATAGACGTTGACACACGAGCTTACTTTACTTCTGCTACAATAATCATTGCAATTCCAACAGGAATTAAAGTTTTTAGATGAATCACTACTCTTTACGGAACAAAAATTAACTACACTCCTACTTTACTTTGATCCTTAGGATTTATTTTTTTATTTACAATAGGAGGATTAACAGGAATCATACTATCTAATTCATCTATTGATATCATTTTACGGGGAGATTCATCGTCAGCGGCGC-TGGCTTCGCGTCGGTGGGCGATGTCCCGCGGTGCC-----GCCTCGTCGCGGCTCCC----GCGCGGGCACGCTACCGTGCGCCGATGTCCGGCGAACGTCGTCGTGCACTTCTCCCCTAGTAGGACGTCGCGACCCGCTGGGTGTCGGTCTACGGCCCGGGGCTGAGGTGACTGCCGCGCGCGGCACGTCAAA-CTGCTCGCGCGGCAAACTCCCGGTCGCCCGGCCGACTGCCCGGCGGTATAC-GCAACGGTATCAGGCCGCGCCTCGCGCGCGTCGAGCTCGTCGCAAGCGAGCGCCACGGTACCCGGAGGTACGGACCTAGC-GCCGTCCCCG--GTCCTGGCCCGCTGC-TGGCAGC-CTCGTACGGTGTAACCTTCGACCGGCCT-CGAGTCCCGCGCGTCCCCGTAACAGGGGCCGCGCGCGGAGGGATACCGGTCGGCGACGCTACTGCTTTGGGTACTCTCAGGA Nomamyrmex_esenbeckii CTTTATAATTGGAGGATTCGGAAATTTTCTTGTTCCTTTAATATTAGGTACACCTGATATAGCTTATCCACGAATAAATAATATAAGATTTTGATTACTACCCCCCTCATTAATATTACTAATTATAAGTAATTTTATAAGAACCGGAGCAGGAACCGGCTGAACAGTCTACCCACCTCTAGCTAATAATACCTTTCATAATGGACCTTCTGTTGATCTAACTATCTTCTCCCTTCATATCGCTGGTATATCATCAATTATAGGAGCAATTAATTTTATTTCTACTATTCTTAATATGCATCATAAAAATATCTCTTTAGATAAAATTCCTCTTATAGTATGATCTATCTTAGTTACTGCTATCTTATTACTTACATCATTACCAGTTCTTGCTGGAGCAATTACCATACTTCTTACTGATCGTAATTTAAATACAACTTTTTTTGACCCTGCGGGAGGAGGAGATCCTATTTTATACCAACATTTATTCTGATTCTTTGGTCACCCCGAAGTTTATATTCTTATTATTCCAGGATTTGGAATAATCTCCCATATTATTACTTGTGAAAGAGGAAAAAAAGAAACATTTGGTGCTGTTGGTATAATTTACGCAATTCTATCAATTGGAATACTAGGATTTATTGTTTGAGCCCATCACATATTCACTGTTGGTATAGATGTTGATACTCGGGCATATTTTACTTCAGCTACAATAATTATTGCAATTCCTACAGGAATCAAAGTTTTTAGATGAATTACTACACTTTATGGTACAAAAATTAATTACACTCCCACATTATTATGATCTATAGGATTTATCTTCCTATTTACAATAGGAGGATTAACTGGAATCATACTTTCTAATTCATCTATTGATATTATTCTTCGGGGAGATTCATCGTCAGCGGCGC-TGGCTTCGCGTCGGTGGGCGATGTCCCGCGGTGCC-----GCCTCGTCGCGGCTCCC----GTGCGGGCACGCTACCGTGCGCCGATGTCCGGCGAACGTCGTCGTGCACTTCTCCCCTAGTAGGACGTCGCGACCCGCTGGGTGTCGGTCTACGGCCCGGGGCTGAGGTGACTGCCGCGTG--GCACGTAAAA-CTGC--GCGCGGCAAACTCCCGGTCGCCCGGCCGACTGCCCGGCGGTATAC-GCAACGGTATCAGGCCGCGCCTCGCGCGCGTCGAGCCCGTCGCAAGCGAGCGCCACGGTAGCCGGAGGTACGGACCTAGC-GCCGTCCCCG--GTCCTGGCCCGCTGC-TGGCTGC-CTCGTACGGTGTAACCTTCGACTGGCCT-AGAGTCC--CGCGCCCCCGTAACACGGGGCGCG----GACGGATACCGGTCGGCGACGCTACTGCTTTGGGTACTCTCAGGA Dorylus_nigricans ATTTATAATTGGGGGTTTTGGTAATTTTATTGCACCTTTAATGATTGGAGCCCCTGACATAGCATATCCTCGAATAAATAATATAAGATTTTGACTCCTCCCCCCCTCAATTACTTTAATAATTATAAGAAATTTCATTAATATAGGATCAGGAACTGGTTGAACTGTATACCCACCTTTAGCCTCAAATATTTACCATAATGGACCATCAATTGATTTAACTATTTTTTCTTTACATATTGCAGGGATATCATCAATTTTAGGAGCCATTAATTTTATCTCAACAATCATTAATATACATCATAAAAATTTAACTATAGATAAAACTCCATTATTTGTTTGATCGATCCTAATTACAGCAATTCTTTTACTTCTTTCATTACCAGTTTTAGCAGGAGCAATTACCATATTATTAACTGATCGTAATATTAATACATCATTTTTTGATCCATCAGGAGGAGGCGATCCTATTTTATATCAACATTTATTTTGATTTTTCGGTCATCCTGAAGTTTATATTTTAATTTTACCTGGGTTTGGTATAATTTCACATATTATTTCAAATGAAAGAGGAAAGAAAGAAACATTTGGTTCATTAAGAATAATTTATGCATTAATAGCTATTGGATTTTTAGGATTTATTGTATGAGCTCATCACATATTTACAGTAGGTATAGATGTAGATACACGAGCTTACTTTACATCAGCAACTATAATTATTGCTATTCCTACTGGTATTAAAATTTTCAGATGAATTACTACATTACATGGAAGAAAAATAAGTAATAACCCTGCATTATTATGATCAATAGGATTTATTTTTTTATTTACCATAGGAGGATTAACAGGAATTGTTTTATCTAATTCATCTATTGATATCATCTTACGGGGAGATTCATCGTCAGCGGCGC-GGGCTTCGCGTCGGCGGGCGATGCCCCGCGCGGCTTGCCGGCGTAAGCTCGGCTCGCCGGCGCGCGGGCACGCTGCCGCGCGCCGATGTCCCGCCGCCGTCGTCGTGCACTTCTCCCCCAGTAGGACGTCGCGACCCGCTGGGTGTCGGCCCACGGCCCGGG--TGCGGTGTCTGCCGCGTC--GCCGGTAAAA-CGGC--ACGCGGCAAACCCCCGATCGCCCGGCCGGCTGCCCGGCGGTAGGCCAAAACGGTACCAGGCCGCGCCACGCGCGCGTCGAGCCCGTCGCGAGCGTCGGCCACGC--ACCGGAGGCACGGACCCAGCCGCCGTCCCCGCCGTGCTGGCCCGCTTCGTAGCGGTGCACCTTCGACGGGCCTATCCGCGCGCGCGCCGCCCCCGTGCTTCGGCGCGGGTGCGCGCGGGCG-CGCGGACTACCGGTCGGCGACGCTACTGCTTTGGGTATACTCAGGA ; END; BEGIN TAXA; TITLE 28S; DIMENSIONS NTAX=11; TAXLABELS Labidus_praedator_Cac1 Labidus_praedator_Cac2 Labidus_praedator_Tap Labidus_praedator_TC Labidus_coecus Labidus_spininodis Eciton_burchellii Eciton_vagans Eciton_mexicanum Nomamyrmex_esenbeckii Dorylus_nigricans ; END; BEGIN CHARACTERS; TITLE 28S; LINK TAXA = 28S; DIMENSIONS NCHAR=501; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Labidus_praedator_Cac1 CGGGGAGATTCATCGTCAGCGGCGC-TGGCTTCGCGTCGGTGGGCGATGTCCCGCGGTGCC-----GCCTCGTCGCGGCTCCC----GCGCGGGCACGCTACCGTGCGCCGATGTCCGGCGAACGTCGTCGTGCACTTCTCCCCTAGTAGGACGTCGCGACCCGCTGGGTGTCGGTCTACGGCCCGGGGCTGAGGTGACTGCCGCGCG--GCACGTAAAA-CTGC--GCGCGGCAAACTCCCGGTCGCCCGGCCGACTGCCCGGCGGTATGC-GCTACGGTATCAGGCCGCGCCTCGCGCGCGTCGAGCCCGTCGCAAGCGAGCGCCACGGTACCCGGAGGTACGGACCCAGC-GCCGTCCCCG--GTCCTGGCCCGCTGC-TGGCTGC-CTCGTACGGTGTAACCTTCGACCGGCCT-GAAGTCC--CGCGCCCCCGTAACACGGGGCGCG----GAGGGATACCGGTCGGCGACGCTACTGCTTTGGGTACTCTCAGGA Labidus_praedator_Cac2 CGGGGAGATTCATCGTCAGCGGCGC-TGGCTTCGCGTCGGTGGGCGATGTCCCGCGGTGCC-----GCCTCGTCGCGGCTCCC----GCGCGGGCACGCTGCCGCGCGCCGATGTCCGGCGAACGTCGTCGTGCACTTCTCCCCTAGTAGGACGTCGCGACCCGCTGGGTGTCGGTCTACGGCCCGGGGCTGAGGCGACTGCCGCGCG--GCACGTAAAAACTGC--GCGCGGCAAACTCCCGGTCGCCCGGCCGACTGCCCGGCGGTATGC-GCTACGGTATCAGGCCGCGCCTCGCGCGCGTCGAGCCCGTCGCAAGCGAGCGCCACGGTACCCGGAGGTACGGACCCAGC-GCCGTCCCCG--GTCCTGGCCCGCTGC-TGGCTGC-CTCGCACGGTGTAACCTTCGACCGGCCTCGAGGTCCCGCGGCCCGCGGAAACGCGGGCCCGC---GGGGTGATACCGGTCGGCGACGCTACTGCTTTGGGTACTCTCAGGA Labidus_praedator_Tap CGGGGAGATTCATCGTCAGCGGCGC-TGGCTTCGCGTCGGTGGGCGATGTCCCGCGGTGCC-----GCCTCGTCGCGGCTCCC----GCGCGGGCACGCTGCCGCGCGCCGATGTCCGGCGAACGTCGTCGTGCACTTCTCCCCTAGTAGGACGTCGCGACCCGCTGGGTGTCGGTCTACGGCCCGGGGCTGAGGCGACTGCCGCGCG--GCACGTAAAAACTGC--GCGCGGCAAACTCCCGGTCGCCCGGCCGACTGCCCGGCGGTATGC-GCTACGGTATCAGGCCGCGCCTCGCGCGCGTCGAGCCCGTCGCAAGCGAGCGCCACGGTACCCGGAGGTACGGACCCAGC-GCCGTCCCCG--GTCCTGGCCCGCTGC-TGGCTGC-CTCGCACGGTGTAACCTTCGACCGGCCTCGAGGTCCCGCGGCCCGCGGAAACGCGGGCCCGC---GGGGTGATACCGGTCGGCGACGCTACTGCTTTGGGTACTCTCAGGA Labidus_praedator_TC CGGGGAGATTCATCGTCAGCGGCGC-TGGCTTCGCGTCGGTGGGCGATGTCCCGCGGTGCC-----GCCTCGTCGCGGCTCCC----GCGCGGGCACGCTGCCGCGCGCCGATGTCCGGCGAACGTCGTCGTGCACTTCTCCCCTAGTAGGACGTCGCGACCCGCTGGGTGTCGGTCTACGGCCCGGGGCTGAGGCGACTGCCGCGCG--GCACGTAAAAACTGC--GCGCGGCAAACTCCCGGTCGCCCGGCCGACTGCCCGGCGGTATGC-GCTACGGTATCAGGCCGCGCCTCGCGCGCGTCGAGCCCGTCGCAAGCGAGCGCCACGGTACCCGGAGGTACGGACCCAGC-GCCGTCCCCG--GTCCTGGCCCGCTGC-TGGCTGC-CTCGCACGGTGTAACCTTCGACCGGCCTCGAGGTCCCGCGGCCCGCGGAAACGCGGGCCCGC---GGGGTGATACCGGTCGGCGACGCTACTGCTTTGGGTACTCTCAGGA Labidus_coecus CGGGGAGATTCATCGTCAGCGGCGC-TGGCTTCGCGTCGGTGGGCGATGTCCCGCGGTGCC-----GCCTCGTCGCGGCTCCC----GCGCGGGCACGCTACCGTGCGCCGATGTCCGGCGAACGTCGTCGTGCACTTCTCCCCTAGTAGGACGTCGCGACCCGCTGGGTGTCGGTCTACGGCCCGGGGCTGAGGCGACTGCCGCGCG--GCACGTAAAA-CTGC--GCGCGGCAAACTCCCGGTCGCCCGGCCGACTGCCCGGCGGTATGC-GCTACGGTATCAGGCCGCGCCTCGCGCGCGTCGAGCCCGTCGCAAGCGAGCGCCACGGTACCCGGAGGTACGGACCCAGC-GCCGTCCCCG--GTCCTGGCCCGCTGC-TGGCTGC-CTCGTACGGTGTAACCTTCGACTGGCCT-GAAGTCC--CGCGCCCCGGTAACACGGGGCGCG----GAGGGATACCGGTCGGCGACGCTACTGCTTTGGGTACTCTCAGGA Labidus_spininodis CGGGGAGATTCATCGTCAGCGGCGC-TGGCTTCGCGTCGGTGGGCGATGTCCCGCGGTGCC-----GCCTCGTCGCGGCTCCC----GCGCGGGCACGCTACCGTGCGCCGATGTCCGGCGAACGTCGTCGTGCACTTCTCCCCTAGTAGGACGTCGCGACCCGCTGGGTGTCGGTCTACGGCCCGGGGCTGAGGTGACTGCCGCGCG--GCACGTAAAA-CTGC--GCGCGGCAAACTCCCGGTCGCCCGGCCGACTGCCCGGCGGTACGC-GCTACGGTATCAGGCCGCGCCTCGCGCGCGTCGAGCCCGTCGCAAGCGAGTGCCACGGTACCCGGAGGTACGGACCCAGC-GCCGTCCCCG--GTCCTGGCCCGCTGC-TGGCTGC-CTCGCACGGTGTAACCTTCGACCGGCCT-GAAGTCC--CGCGCCCCCGTAACACGGGGCGCG----GAGGGATACCGGTCGGCGACGCTACTGCTTTGGGTACTCTCGGGA Eciton_burchellii CGGGGAGATTCATCGTCAGCGGCGCCTGGCTTCGCGTCGGTGGGCGATGTCCCGCGGTGCC-----GCCTCGTCGCGGCTCCC----GCGAGGGCACGCTACCGTGCGCCGATGTCCGGCGA-CGTCGTCGTGCACTTCTCCCCTAGTAGGACGTCGCGACCCGCTGGGTGTCGGTCTACGGCCCGGGGCTGAGGTGACTGCCGCGCC--GCACGTCAAA-CTGC--GCCCGGCAAACTCCCGGCTGCCCGGCCGACTGCCCGGCGGTATAC-GCAACGGTATCAGGCCGCGCCTCGCGCGCGTCGAGCCCGTCGCAAGCGAGCGCCACGGTACCCGGAGGTACGGACCCAGC-GCCGTCCCCG--GTCCTGGCCCGCTGC-TGGCAGC-CTCGTACGGTGTAACCTTCGACTGGCCT-GGAGTCCCCCGCGCCCCCGTAACACGGGGCAAG---GGGGGGATACCGGTCGGCGACGCTACTGCTTTGGGTACTCTCAGGA Eciton_vagans CGGGGAGATTCATCGTCAGCGGCGC-TGGCTTCGCGTCGGTGGGCGATGTCCCGCGGTGCC-----GCCTCGTCGCGGCTCCC----GCGCGGGCACGCTACCGTGCGCCGATGTCCGGCGAACGTCGTCGTGCACTTCTCCCCTAGTAGGACGTCGCGACCCGCTGGGTGTCGGTCTACGGCCCGGGGCTGAGGTGACTGCCGCGCG--GCACGTAAAA-CTGC--GCGCGGCAAACTCCCGGTCGCCCGGCCGACTGCCCGGCGGTATAC-TCAACGGTATCAGGCCGCGCCTCGCGCGCGTCGAGCCCGTCGCAAGCGAGCGCCACGGTACCCGGAGGTACGGACCTAGC-GCCGTCCCCG--GTCCTGGCCCGCTGC-TGGCAGC-CTCGTACGGTGTAACCTTCGACTGGCCT-GAAG--------------------------------------ATACCGGTCGGCGACGCTACTGCTTTGGGTACTCTCAGGA Eciton_mexicanum CGGGGAGATTCATCGTCAGCGGCGC-TGGCTTCGCGTCGGTGGGCGATGTCCCGCGGTGCC-----GCCTCGTCGCGGCTCCC----GCGCGGGCACGCTACCGTGCGCCGATGTCCGGCGAACGTCGTCGTGCACTTCTCCCCTAGTAGGACGTCGCGACCCGCTGGGTGTCGGTCTACGGCCCGGGGCTGAGGTGACTGCCGCGCGCGGCACGTCAAA-CTGCTCGCGCGGCAAACTCCCGGTCGCCCGGCCGACTGCCCGGCGGTATAC-GCAACGGTATCAGGCCGCGCCTCGCGCGCGTCGAGCTCGTCGCAAGCGAGCGCCACGGTACCCGGAGGTACGGACCTAGC-GCCGTCCCCG--GTCCTGGCCCGCTGC-TGGCAGC-CTCGTACGGTGTAACCTTCGACCGGCCT-CGAGTCCCGCGCGTCCCCGTAACAGGGGCCGCGCGCGGAGGGATACCGGTCGGCGACGCTACTGCTTTGGGTACTCTCAGGA Nomamyrmex_esenbeckii CGGGGAGATTCATCGTCAGCGGCGC-TGGCTTCGCGTCGGTGGGCGATGTCCCGCGGTGCC-----GCCTCGTCGCGGCTCCC----GTGCGGGCACGCTACCGTGCGCCGATGTCCGGCGAACGTCGTCGTGCACTTCTCCCCTAGTAGGACGTCGCGACCCGCTGGGTGTCGGTCTACGGCCCGGGGCTGAGGTGACTGCCGCGTG--GCACGTAAAA-CTGC--GCGCGGCAAACTCCCGGTCGCCCGGCCGACTGCCCGGCGGTATAC-GCAACGGTATCAGGCCGCGCCTCGCGCGCGTCGAGCCCGTCGCAAGCGAGCGCCACGGTAGCCGGAGGTACGGACCTAGC-GCCGTCCCCG--GTCCTGGCCCGCTGC-TGGCTGC-CTCGTACGGTGTAACCTTCGACTGGCCT-AGAGTCC--CGCGCCCCCGTAACACGGGGCGCG----GACGGATACCGGTCGGCGACGCTACTGCTTTGGGTACTCTCAGGA Dorylus_nigricans CGGGGAGATTCATCGTCAGCGGCGC-GGGCTTCGCGTCGGCGGGCGATGCCCCGCGCGGCTTGCCGGCGTAAGCTCGGCTCGCCGGCGCGCGGGCACGCTGCCGCGCGCCGATGTCCCGCCGCCGTCGTCGTGCACTTCTCCCCCAGTAGGACGTCGCGACCCGCTGGGTGTCGGCCCACGGCCCGGG--TGCGGTGTCTGCCGCGTC--GCCGGTAAAA-CGGC--ACGCGGCAAACCCCCGATCGCCCGGCCGGCTGCCCGGCGGTAGGCCAAAACGGTACCAGGCCGCGCCACGCGCGCGTCGAGCCCGTCGCGAGCGTCGGCCACGC--ACCGGAGGCACGGACCCAGCCGCCGTCCCCGCCGTGCTGGCCCGCTTCGTAGCGGTGCACCTTCGACGGGCCTATCCGCGCGCGCGCCGCCCCCGTGCTTCGGCGCGGGTGCGCGCGGGCG-CGCGGACTACCGGTCGGCGACGCTACTGCTTTGGGTATACTCAGGA ; END; BEGIN TAXA; TITLE coxI; DIMENSIONS NTAX=13; TAXLABELS Labidus_praedator_Cac1 Labidus_praedator_Cac2 Labidus_praedator_Tap Labidus_praedator_TC Labidus_praedator_JTL001 Labidus_praedator_MAS005_KC418232 Labidus_praedator_MAS005_KC418847 Labidus_praedator_MAS001 Labidus_praedator Labidus_praedator_MAS004 Labidus_praedator_MAS002 Labidus_praedator_MAS003 Labidus_spininodis ; END; BEGIN CHARACTERS; TITLE coxI; LINK TAXA = coxI; DIMENSIONS NCHAR=490; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Labidus_praedator_Cac1 TTTTATGATTGGAGGATTTGGAAACTTTCTTGTACCATTAATATTAGGTACTCCTGATATAGCATACCCTCGTATAAATAATATAAGATTTTGACTTCTCCCTCCTTCATTAATACTATTAATTATAGGAAGATATGTAGGAACAGGAGCTGGTACCGGATGAACCGTTTACCCTCCTTTAGCAACTAATACCTATCATAATGGCCCTTCAATTGATTTAACTATCTTTTCACTTCATATTGCAGGTATATCATCAATTATAGGTGCTATTAATTTTATTTCTACTATCCTTAATATACATCATAAAAAAATATCATTAGATAAAATTCCACTCATAGTATGAGCAATTTTAGTAACTGCAATTCTTTTATTAAGTTCACTACCAGTTTTAGCAGGAGCAATTACTATACTTCTAACTGACCGAAATTTAAACACAACTTTTTTTGATCCTGCTGGAGGAGGTGACCCAATTCTTTATCAACATTTATTT Labidus_praedator_Cac2 ??????????????????????????????????????????????????????????????CATACCCTCGTATAAATAATATGAGATTTTGACTACTCCCCCCATCATTAATATTACTAATTATAAGTAGATATGTAGGAACAGGTACTGGTACAGGATGAACAGTTTATCCACCATTAGCAGCTAATACCTATCATAACGGACCTTCAATTGACTTAACTATTTTTTCCCTTCATATTGCAGGGATATCATCAATCATAGGGGCCATTAATTTTATCTCTACTATTCTTAATATACATCATAAAAAAATTTCATTAGATAAAATCCCTCTTATAGTTTGAGCTATTCTAGTGACCGCAATTCTTTTATTAAGCTCACTACCAGTATTAGCAGGAGCAATCACTATACTTTTAACTGACCGAAATCTTAATACAACATTTTTCGACCCTGCAGGAGGAGGAGACCCTATTCTTTACCAACATTTATTT Labidus_praedator_Tap TTTTATAATCGGAGGATTTGGAAATTATCTTGTACCATTAATGTTAGGAACCCCTGATATAGCATACCCTCGTATAAATAATATGAGATTTTGACTACTCCCCCCATCATTAATATTACTAATTATAAGTAGATATGTAGGAACAGGTACTGGTACAGGATGAACAGTTTATCCACCATTAGCAGCTAATACCTATCATAACGGACCTTCAATTGACTTAACTATTTTTTCCCTTCATATTGCAGGGATATCATCAATCATAGGAGCCATTAATTTTATCTCTACTATTCTTAATATACATCATAAAAAAATTTCATTAGATAAAATCCCTCTTATAGTTTGAGCTATTCTAGTGACCGCAATTCTTTTATTAAGCTCACTACCAGTATTAGCAGGAGCAATCACTATACTTTTAACTGACCGAAATCTTAATACAACATTTTTCGACCCTGCAGGAGGAGGAGACCCTATTCTTTACCAACATTTATTT Labidus_praedator_TC TTTTATAATCGGAGGATTTGGAAATTATCTTGTACCATTAATGTTAGGAACCCCTGATATAGCATACCCTCGTATAAATAATATGAGATTTTGACTACTCCCCCCATCATTAATATTACTAATTATAAGTAGATATGTAGGAACAGGTACTGGTACAGGATGAACAGTTTATCCACCATTAGCAGCTAATACCTATCATAACGGACCTTCAATTGACTTAACTATTTTTTCCCTTCATATTGCAGGGATATCATCAATCATAGGGGCCATTAATTTTATCTCTACTATTCTTAATATACATCATAAAAAAATTTCATTAGATAAAATCCCTCTTATAGTTTGAGCTATTCTAGTGACCGCAATTCTTTTATTAAGCTCACTACCAGTATTAGCAGGAGCAATCACTATACTTTTAACTGACCGAAATCTTAATACAACATTTTTCGACCCTGCAGGAGGAGGAGACCCTATTCTTTACCAACATTTATTT Labidus_praedator_JTL001 TTTTATAATCGGAGGATTTGGAAATTATCTTGTACCATTAATATTAGGAACCCCTGATATAGCATACCCTCGCATAAATAATATAAGATTTTGACTACTCCCTCCATCATTAATATTACTAATTATAAGAAGATATGTAGGAACAGGTACTGGTACAGGATGAACAGTTTATCCACCATTAGCAGCTAATACCTATCATAATGGGCCCTCAATTGACTTAACTATTTTTTCCCTTCATATTGCAGGAATATCATCAATCATAGGAGCCATTAATTTTATCTCTACTATTCTTAATATACATCATAAAAAAATTTCATTAGATAAAATTCCTCTTATAGTTTGAGCTATTCTAGTAACCGCAATTCTTTTATTAAGTTCACTACCAGTATTAGCAGGAGCAATCACTATACTTTTAACTGACCGAAATCTTAATACAACATTTTTCGACCCTGCAGGAGGAGGGGACCCCATTCTTTATCAACATTTATTT Labidus_praedator_MAS005_KC418232 TTTTATAATTGGAGGATTCGGAAACTTTCTTGTTCCTTTAATATTAGGTACTCCCGATATAGCTTACCCACGTATAAATAATATAAGATTTTGACTTCTCCCACCTTCACTAATACTTTTAATTATAAGAAGATATGTAGGAACAGGGACTGGAACAGGATGAACAGTCTATCCACCATTAGCTGCTAACACTTACCATAATGGACCTTCTATTGATTTAACTATTTTTTCATTACATATTGCTGGAATATCCTCAATTTTAGGAGCTATCAATTTTATTTCTACTATTTTAAATATACATCATAATAAAATTTCTTTAGATAAAATTCCTCTATTAGTTTGAGCTATTTTAGTTACTGCAATTCTTTTATTAAGATCCCTCCCTGTATTAGCAGGGGCAATTACTATACTTCTAACAGATCGAAATTTAAATACAACTTTCTTTGACCCCGCAGGCGGGGGAGACCCAATTCTTTATCAACATTTATTC Labidus_praedator_MAS005_KC418847 TTTTATAATTGGAGGATTCGGAAACTTTCTTGTTCCTTTAATATTAGGTACCCCCGATATAGCTTACCCACGTATAAATAATATAAGATTTTGACTCCTCCCGCCTTCACTAATACTTTTAATTATAGGAAGATATGTAGGAACAGGGGCTGGAACAGGATGAACAGTCTATCCACCATTAGCTGCCAACACTTATCATAATGGACCTTCTATTGATTTAACTATTTTTTCATTACATATCGCTGGAATATCATCAATTTTAGGAGCTATCAATTTTATTTCTACTATCTTAAATATACATCATAATAAAATCTCTTTAGATAAAATTCCTCTATTAGTTTGAGCTATTTTAGTTACTGCAATTCTTTTATTAAGATCCCTCCCTGTATTAGCAGGAGCAATCACTATACTTCTAACAGATCGAAATTTAAATACAACTTTCTTTGATCCCGCAGGTGGTGGAGATCCAATTCTTTACCAACATTTATTT Labidus_praedator_MAS001 ATTCATAATTGGAGGATTTGGAAATTTTTTAGTCCCTTTAATATTAGGAACTCCAGATATAGCTTACCCTCGTATAAATAATATAAGATTTTGATTGCTCCCTCCTTCATTAATATTATTAATTATAGGAAGATACGTAAGTACTGGGGCCGGTACAGGATGAACAGTTTATCCTCCTTTAGCAACCAATACATTCCATAGAGGACCTTCTATTGATTTAACTATTTTTTCCCTTCATATTGCAGGTATATCATCTATTATAGGAGCTATTAATTTTATTTCAACAATCTTAAATATACACCATAAAAAAATTTCATTAGATAAAATCCCCCTTATAGTATGAGCTATCCTAGTTACTGCCATTTTATTACTTAGATCACTTCCAGTACTAGCAGGAGCTATTACAATATTATTAACAGACCGAAATTTAAATACAACTTTTTTCGACCCTACAGGAGGAGGAGA?CCTATTCTTTATCAACATTTATTC Labidus_praedator TTTTATAATTGGAGGATTCGGAAACTTTCTTGTTCCTTTAATATTAGGTACTCCTGATATAGCTTACCCACGTATAAATAATATAAGATTTTGACTTCTCCCACCTTCATTAATACTTTTAATTATAGGAAGATATGTAGGCACAGGAGCTGGAACAGGATGAACAGTCTATCCCCCATTAGCTACCAATACTTATCATAACGGACCTTCAATTGATTTAACTATTTTTTCATTACATATCGCTGGAATATCGTCAATTTTAGGAGCTATCAATTTTATTTCTACTATTCTAAATATACATCATAATAAAATTTCTTTAGATAAAATTCCTTTATTAGTTTGAGCTATTTTAGTTACTGCAATTCTTTTATTAAGATCTCTTCCTGTATTAGCAGGAGCAATCACTATACTTCTTACAGACCGAAATTTAAACACAACTTTCTTTGACCCTGCAGG?????????????????????????????????? Labidus_praedator_MAS004 TTTTATAATTGGAGGATTTGGAAATTTTCTTGTTCCTCTAATATTAGGAACTCCTGATATAGCTTATCCACGTATAAATAATATAAGATTTTGACTTTTGCCACCTTCATTAATATTATTAATTATAGGAAGATACGTAGGAACAGGAGCTGGTACAGGATGAACAGTATACCCTCCATTAGCCGCTAATACTTACCATAATGGACCTTCAATTGATTTAACTATTTTTTCTCTCCATATTGCTGGAATATCATCAATTTTAGGGGCTATTAATTTTATTTCTACCATTCTTAATATACATCACAACAAAATTTCTTTAGATAAAATTCCTTTATTAGTCTGAGCCATTTTAGTTACTGCAATTCTTTTATTAAGATCTCTTCCTGTTTTAGCAGGGGCAATTACTATACTTCTTACAGATCGAAATTTAAATACAACATTCTTTGATCCCGCAGGTGGTGGAGACCCAATCCTCTATCAACATTTATTT Labidus_praedator_MAS002 TTTTATGATTGGGGGGTTTGGAAACTTTCTTGTACCATTAATATTAGGTACTCCTGATATAGCTTATCCTCGTATAAATAACATAAGATTTTGACTTCTTCCTCCCTCATTAATATTATTAATTATAGGAAGATACACAGGAACAGGAGCTGGTACTGGATGAACAGTTTACCCCCCTTTAGCCGCTAATACCTATCATAATGGCCCTTCAATTGATTTAACTATTTTTTCACTTCATATTGCAGGTATATCATCAATTATAGGAGCTATTAATTTTATTTCCACCATTCTTAATATACATCATAAAAAAATATCATTAGATAAAATTCCACTTATAGTATGAGCAATTTTAGTAACTGCTATTCTTTTATTAAGTTCATTACCAGTTTTAGCAGGAGCAATCACTATACTTTTAACTGATCGAAATTTAAATACAACCTTTTTTGATCCTGCCGGAGGAGGTGATCCAATTCTTTATCAACATTTATTT Labidus_praedator_MAS003 TTTTATAATTGGGGGGTTTGGAAACTTTCTTGTACCACTAATATTAGGTACTCCTGATATAGCATACCCTCGTATAAATAATATAAGATTTTGACTTCTCCCTCCTTCATTAATATTATTAATTATAAGAAGTTACGTAGGAACAGGAGCTGGTACTGGATGAACAGTTTACCCTCCTTTAGCAACTAATACCTATCATAATGGTCCTTCAATTGATTTAACTATTTTTTCACTTCATATTGCAGGAATATCATCAATTATAGGTGCTATTAATTTTATTTCTACTATTCTTAATATACATCACAAAAAAATATCATTAGATAAAATCCCCCTTATAGTATGAGCAATTTTAGTGACTGCTATTCTTTTATTAAGCTCATTACCAGTTTTAGCAGGAGCAATTACTATACTTTTAACTGATCGAAATTTAAATACAACTTTTTTTGATCCTGCCGGAGGAGGTGACCCAATTCTTTACCAACATTTATTT Labidus_spininodis ATTTATAATCGGAGGATTTGGTAATTTCCTAGTCCCTTTAATGTTAGGGACTCCTGATATAGCATATCCTCGTATAAATAACATAAGATTTTGATTATTACCACCCTCATTAATATTATTAATCATAAGAAGATATGTAGGAACCGGAGCCGGAACAGGATGAACCGTATACCCCCCATTAGCAACCAATACATATCATAATGGTCCTTCAATTGATTTAACAATCTTTTCTCTTCATATCGCAGGAATATCCTCTATTATAGGAGCCATTAATTTTATTTCAACTATTCTTAATATACATCATAAAAAAGTATCATTAGATAAAATCCCACTTATAGTTTGAGCTATTTTAGTAACTGCTATCCTACTATTGAGATCCTTACCTGTATTAGCAGGAGCTATTACTATACTTTTAACAGATCGAAATCTAAATACAACCTTCTTTGATCCTGCAGGAGGTGGAGATCCTATTCTTTATCAACACTTATTT ; END; BEGIN TREES; Title ML_tree; LINK Taxa = whole_sequence; TRANSLATE 1 Labidus_praedator_Cac1, 2 Labidus_praedator_Cac2, 3 Labidus_praedator_Tap, 4 Labidus_praedator_TC, 5 Labidus_coecus, 6 Labidus_spininodis, 7 Eciton_burchellii, 8 Eciton_vagans, 9 Eciton_mexicanum, 10 Nomamyrmex_esenbeckii, 11 Dorylus_nigricans; TREE ML_tree = ((((((((2:8.4085E-4,4:0.0)0.6840:0.00168503,3:0.0)1.0000:0.06929423,1:0.04705939)0.5160:0.01158264,6:0.06031872)0.4320:0.00987046,5:0.05516259)0.9400:0.02769445,(7:0.0742506,(8:0.04725706,9:0.06659039)0.3580:0.00737059)0.6600:0.01398396)0.6660:0.0214367,10:0.09262983)0.0000:0.17198294,11:0.31438729); END; BEGIN TREES; Title NJ_tree; LINK Taxa = whole_sequence; TRANSLATE 1 Labidus_praedator_Cac1, 2 Labidus_praedator_Cac2, 3 Labidus_praedator_Tap, 4 Labidus_praedator_TC, 5 Labidus_coecus, 6 Labidus_spininodis, 7 Eciton_burchellii, 8 Eciton_vagans, 9 Eciton_mexicanum, 10 Nomamyrmex_esenbeckii, 11 Dorylus_nigricans; TREE NJ_tree = ((((((((2:9.572E-5,4:7.3057E-4)0.6240:8.6073E-4,3:7.9516E-4)1.0000:0.05121376,1:0.0440106)0.4520:0.0031853,6:0.05062043)0.4220:0.0023368,5:0.04632315)0.9360:0.01857666,(7:0.05899931,(8:0.03965329,9:0.05555833)0.2300:8.8272E-4)0.4180:0.00317459)0.4900:0.00946245,10:0.07610112)0.0000:0.0680749,11:0.15444117); END; BEGIN TREES; Title ML_tree; LINK Taxa = 28S; TRANSLATE 1 Labidus_praedator_Cac1, 2 Labidus_praedator_Cac2, 3 Labidus_praedator_Tap, 4 Labidus_praedator_TC, 5 Labidus_coecus, 6 Labidus_spininodis, 7 Eciton_burchellii, 8 Eciton_vagans, 9 Eciton_mexicanum, 10 Nomamyrmex_esenbeckii, 11 Dorylus_nigricans; TREE Imported_tree_0 = ((((((((3:0.0,4:0.0)0.3040:0.0,2:0.0)0.9440:0.00932415,6:0.00689105)0.3120:0.00211751,1:0.0)0.2680:0.00221779,5:0.00222252)0.5600:0.00704245,(8:0.002467,(7:0.01395453,9:0.00682649)0.5620:0.00407391)0.4040:0.00225052)0.2100:0.0107859,10:0.0)0.0000:0.17384526,11:0.20533305); END; BEGIN TREES; Title NJ_tree; LINK Taxa = coxI; TRANSLATE 1 Labidus_praedator_Cac1, 2 Labidus_praedator_Cac2, 3 Labidus_praedator_Tap, 4 Labidus_praedator_TC, 5 Labidus_praedator_JTL001, 6 Labidus_praedator_MAS005_KC418232, 7 Labidus_praedator_MAS005_KC418847, 8 Labidus_praedator_MAS001, 9 Labidus_praedator, 10 Labidus_praedator_MAS004, 11 Labidus_praedator_MAS002, 12 Labidus_praedator_MAS003, 13 Labidus_spininodis; TREE Imported_tree_0 = (((((((2:-3.9879E-4,4:3.9879E-4)0.6020:0.00166696,3:5.2988E-4)1.0000:0.01964426,5:0.01273685)1.0000:0.05974868,(1:0.02828019,(11:0.03498765,12:0.02467514)0.6240:0.00508821)0.9980:0.02776122)0.5440:0.00720329,(10:0.05300057,(9:0.02559207,(6:0.01863382,7:0.01993157)0.9220:0.01295757)0.9940:0.02863801)0.9980:0.04891262)0.6920:0.0171393,8:0.11492961)0.0000:0.02974593,13:0.06840891); END; BEGIN TREES; Title ML_tree; LINK Taxa = coxI; TRANSLATE 1 Labidus_praedator_Cac1, 2 Labidus_praedator_Cac2, 3 Labidus_praedator_Tap, 4 Labidus_praedator_TC, 5 Labidus_praedator_JTL001, 6 Labidus_praedator_MAS005_KC418232, 7 Labidus_praedator_MAS005_KC418847, 8 Labidus_praedator_MAS001, 9 Labidus_praedator, 10 Labidus_praedator_MAS004, 11 Labidus_praedator_MAS002, 12 Labidus_praedator_MAS003, 13 Labidus_spininodis; TREE Imported_tree_0 = (((((((2:0.0,4:0.0)0.7420:0.00233753,3:0.0)0.9960:0.03054288,5:0.01219874)1.0000:0.14821289,(1:0.01940378,(11:0.05296968,12:0.04231256)0.6100:0.03389705)0.9900:0.12878259)0.5960:0.04316849,(10:0.08416984,(9:0.02145433,(6:0.03887,7:0.01036035)0.9460:0.04804999)0.9400:0.08817436)0.9980:0.19426028)0.7340:0.12146198,8:0.32799693)0.0000:0.0605773,13:0.18276202); END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = whole_sequence) = 'Jukes-Cantor': 1 - 1387; ProbModelSet * UNTITLED (CHARACTERS = 28S) = 'Jukes-Cantor': 1 - 501; ProbModelSet * UNTITLED (CHARACTERS = coxI) = 'Jukes-Cantor': 1 - 490; END; BEGIN CODONS; CODESET * UNTITLED (CHARACTERS = whole_sequence) = universal: 1 - 1387; CODESET * UNTITLED (CHARACTERS = 28S) = universal: 1 - 501; CODESET * UNTITLED (CHARACTERS = coxI) = universal: 1 - 490; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = whole_sequence) = unord: 1 - 1387; TYPESET * UNTITLED (CHARACTERS = 28S) = unord: 1 - 501; TYPESET * UNTITLED (CHARACTERS = coxI) = unord: 1 - 490; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1421069015644; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1722501824249391604; setID 1 2801978954306307516; setID 2 3661714127803250388; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 1822501090704888689; mqVersion 275; checksumv 0 3 246900130 null getNumChars 1387 numChars 1387 getNumTaxa 11 numTaxa 11 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 348765.0 sumSquares -4.150517416584631E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 3; mqVersion; setID 1 1168193400323963749; mqVersion 275; checksumv 1 3 2727111146 null getNumChars 501 numChars 501 getNumTaxa 11 numTaxa 11 short true bits 15 states 15 sumSquaresStatesOnly 90293.0 sumSquares 90293.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 3; mqVersion; setID 2 6678622659577777223; mqVersion 275; checksumv 2 3 3612040659 null getNumChars 490 numChars 490 getNumTaxa 13 numTaxa 13 short true bits 15 states 15 sumSquaresStatesOnly 165207.0 sumSquares 165207.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 3; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 233; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1284 720; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #1822501090704888689 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 207; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -67; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; showDataWindow #1168193400323963749 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -67; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; showDataWindow #6678622659577777223 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -67; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;