NEXUS
[File created by TreeBASE:  7/26/07  21:15:51]
[Matrix accession#: M3017]

BEGIN TAXA;
	TITLE M3017;
	DIMENSIONS  NTAX=14;
	TAXLABELS
		Gelsemium_rankinii_4341	Gelsemium_rankinii_4340	Gelsemium_rankinii_4338	Gelsemium_rankinii_4374	Gelsemium_rankinii_4370	Gelsemium_elegans_4173	Gelsemium_elegans_4162	Gelsemium_sempervirens_4188	Gelsemium_sempervirens_4186	Mostuea_hirsuta	Mostuea_surinamensis	Mostuea_batsii	Strychnos_spinosa	Periploca_sepium
	;
END;

BEGIN CHARACTERS;
	TITLE M3017;
	DIMENSIONS NCHAR=478;
	FORMAT DATATYPE = DNA MISSING = ? GAP = -  ;
	MATRIX
		Gelsemium_rankinii_4341           TGCAGGATCCAACCAGGTAGCATTCCTCACC--GACGCCGGCGCC--GCATGAGCCGA--------GACGGCCCGAGGGCCGGTGGCTCAAGACGGGCGCGGCAGTCGTCCGCTGATTAGCGACGAACGCTTATTTTTT-GGGTAAACAGAGGTCGGCGACCCCCCTACCCGCAAGGCGTTCCGCATCCGAGAGCTCGAGCGACTCGACGAGGGCCAAGGCCACGGCACGCCGAAGCGTCCGTAGCTTGGGACACGGCGAGCGCTTTGGAG-TTCACCCCGAGCCGATGCCCGTTAAGGCC---AGCTCAAGGCGAACGGGGGACGATTGGGACAAA-------CGAATGCCGTCGCAGTAGGTATGCAGCACAGGAAACCGTCTGGCGGCCAAG--GCAAACGATGCACTTGGACCGAGAAATGAAGGGGCTTGCACGAGA-GGACGTCGCTGCCCAA-GCAGGGATCCAACATACC
		Gelsemium_rankinii_4340           TGCAGGATCCAACCAGGTAGCATTCCTCACC--GACGCCGGCGCC--GCATGAGCCGA--------GACGGCCCGAGGGCCGGTGGCTCAAGACGGGCGCGGCAGTCGTCCGCTGATTAGCGACGAACGCTTATTTTTT-GGGTAAACAGAGGTCGGCGACCCCCCTACCCGCAAGGCGTTCCGCATCCGAGAGCTCGAGCGACTCGACGAGGGCCAAGGCCACGGCACGCCGAAGCGTCCGTAGCTTGGGACACGGCGAGCGCTTTGGAG-TTCACCCCGAGCCGATGCCCGTTAAGGCC---AGCTCAAGGCGAACGGGGGACGATTGGGACAAA-------CGAATGCCGTCGCAGTAGGTATGCAGCACAGGAAACCGTCTGGCGGCCAAG--GCAAACGATGCACTTGGACCGAGAAATGAAGGGGCTTGCACGAGA-GGACGTCGCTGCCCAA-GCAGGGATCCAACATACC
		Gelsemium_rankinii_4338           TGCAGGATCCAACCAGGTAGCATTCCTCACC--GACGCCGGCGCC--GCATGAGCCGA--------GACGGCCCGAGGGCCGGTGGCTCAAGACGGGCGCGGCAGTCGTCCGCTGATTAGCGACGAACGCTTATTTTTT-GGGTAAACAGAGGTCGGCGACCCCCCTACCCGCAAGGCGTTCCGCATCCGAGAGCTCGAGCGACTCGACGAGGGCCAAGGCCACGGCACGCCGAAGCGTCCGTAGCTTGGGACACGGCGAGCGCTTTGGAG-TTCACCCCGAGCCGATGCCCGTTAAGGCC---AGCTCAAGGCGAACGGGGGACGATTGGGACAAA-------CGAATGCCGTCGCAGTAGGTATGCAGCACAGGAAACCGTCTGGCGGCCAAG--GCAAACGATGCACTTGGACCGAGAAATGAAGGGGCTTGCACGAGA-GGACGTCGCTGCCCAA-GCAGGGATCCAACATACC
		Gelsemium_rankinii_4374           NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNGAGCCGA--------GACGGCCCGAGGGCCGGTGGCTCAAGACGGGCGCGGCAGTCGTCCGCTGATTAGCGACGAACGCTTATTTTTT-GGGTAAACAGAGGTCGGCGACCCCCCTACCCGCAAGGCGTTCCGCATCCGAGAGCTCGAGCGACTCGACGAGGGCCAAGGCCACGGCACGCCGAAGCGTCCGTAGCTTGGGACACGGCGAGCGCTTTGGAG-TTCACCCCGAGCCGATGCCCGTTAAGGCC---AGCTCAAGGCGAACGGGGGACGATTGGGACAAA-------CGAATGCCGTCGCAGTAGGTATGCAGCACAGGAAACCGTCTGGCGGCCAAG--GCAAACGATGCACTTGGACCGAGAAATGAAGGGGCTTGCACGAGA-GGACGTCGCTGCCCAA-GCAGGGATCCAACATCCC
		Gelsemium_rankinii_4370           TGCAGGATCCAAACCCGTAGCATTCCTCACC--GACGCCGGCGCC--GCATGAGCCGA--------GACGGCCCGAGGGCCGGTGGCTCAAGACGGGCGCGGCAGTCGTCCGCTGATTAGCGACGAACGCTTATTTTTT-GGGTAAACAGAGGTCGGCGACCCCCCTACCCGCAAGGCGTTCCGCATCCGAGAGCTCGAGCGACTCGACGAGGGCCAAGGCCACGGCACGCCGAAGCGTCCGTAGCTTGGGACACGGCGAGCGCTTTGGAG-TTCACCCCGAGCCGATGCCCGTTAAGGCC---AGCTCAAGGCGAACGGGGGACGATTGGGACAAA-------CGAATGCCGTCGCAGTAGGTATGCAGCACAGGAAACCGTCTGGCGGCCAAG--GCAAACGATGCACTTGGACCGAGAAATGAAGGGGCTTGCACGAGA-GGACGTCGCTGCCCAA-GCAGGGATCCAANNNNNN
		Gelsemium_elegans_4173            NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNGAGCCAA--------GACGGCCCGAGGGCCGGTGGCTCAAGACGGGCGCGGCAGTCGTGCGCTGGTTAGCGACGAACGCTTTTTTTTT-GGGCAAACAGAGGTCGGCGACCCCC-TACCCGCAAGGCGTTCCGCATCCGAGAGCTCGAGCAACCCGACGAGGGCCAAGGCCCCGGCACGCCGAAGCGTCCGTAGCTTGGGACACGGCGGGCGCTTTGGAG-TTCACCCCGAGCCTATGCCCGTTACGGCC---AGCTCAAGGCGAACGAGGGACGATTGGGACAGA-------CGAATGCCGTCAAAGTAGGTATGCAACACAGGAAACCGTCTGGCGGCCAAG--GCAAACGATGCACTTGGACCGAGAAATGAAGGGGCTTGCACGAGA-GGACGTCGCTGCTCGA-GCAGGGATCCAACATACC
		Gelsemium_elegans_4162            TGCAGGATCAAACCAGGTAGCATTCCTCACC--GACGCCGGCGCC--GCATGAGCCAA--------GACGGCCCGAGGGCCGGTGGCTCAAGACGGGCGCGGCAGTCGTGCGCTGGTTAGCGACGAACGCTTTTTTTTT-GGGCAAACAGAGGTCGGCGACCCCC-TACCCGCAAGGCGTTCCGCATCCGAGAGCTCGAGCAACCCGACGAGGGCCAAGGCCCCGGCACGCCGAAGCGTCCGTAGCTTGGGACACGGCGGGCGCTTTGGAG-TTCACCCCGAGCCTATGCCCGTTACGGCC---AGCTCAAGGCGAACGAGGGACGATTGGGACAGA-------CGAATGCCGTCAAAGTAGGTATGCAACACAGGAAACCGTCTGGCGGCCAAG--GCAAACGATGCACTTGGACCGAGAAATGAAGGGGCTTGCACGAGA-GGACGTCGCTGCTCGA-GCAAGGATCCAACATACC
		Gelsemium_sempervirens_4188       NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNGAGCCGA--------GACGGCCCGAGGGCCGCCGGCTCAAGACGGGCGCGGCAGTCGTCCGCTGGTTAGCGACGAACGCTTATTTTTT-GGGTAAACAGAGGTCGGCGACCCCCCTACCCGCAAGGCGTTCCGCATCCGAGAGATCGAGCGACTCGACGAGGGCCAAGGCCGCGGCACGCCGAAGCGTCCGTAGCTTGGGACACGGCGAGCGCTTTGGAG-TTCACCCCGAGCCGATGCCCTTTACGGCCACCAGCTCAAGGCGAACGGGGGACGATTGGGACAAA-------CGAATGCCGTCACAGTAGGTATGCAGCACAGGAAACCGTCGGGCGGCCAAG--GCAAACGATGCACTTGAACCGAGAAATGAAAGGGCTTGCACGATA-GGACGTCGCTGCTCAA-GCAGGGATCCAACATACC
		Gelsemium_sempervirens_4186       NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNAGCCGA--------GACGGCCCGAGGGCCGCCGGCTCAAGACGGGCGCGGCAGTCGTCCGCTGGTTAGCGACGAACGCTTATTTTTT-GGGTAAACAGAGGTCGGCGACCCCCCTACCCGCAAGGCGTTCCGTATCCGAGAGATCGAGCGACTCGACGAGGGCCAAGGCCGCGGCACGCCGAAGCWTCCGTAGCTTGGGACACGGCGAGCGCTTTGGAG-TTCACCCCGAGCCGATGCCCTTTACGGCCACCAGCTCAAGGCGAACGGGGGACGATTGGGACAAA-------CGAATGCCGTCACAGTAGGTATGCAGCACAGGAAACCGTCGGGCGGCCAAG--GCAAACGATGCACTTGAACCGAGAAATGAAAGGGCTTGCACGAGA-GGACGTCGCTGCTCAA-GCAGGGATCCAACATACC
		Mostuea_hirsuta                   TGCAGGATC-AACCAGGTAGCATTCCTCACC--GACGCCGGCACCCCCCACGTGCCAGACGGGTSCTAAAAGACTAGAACCGGCCGCCCTGGGTGAGCACGGCGATCGTTCGCTGGTTAGCGATGAACGCTTGCTTTTT-GGGTAAAGGAGGGTCAATGACCCC--TACCCGAAATGCATTCCATTTCCGAGAGTTCGAGCAACTTGACGAGAACCGATGCCATGGCACGCAAATGCATCCGTGGATTGGGACACGACAAGCGCTTC-GAGTTTCACATTGCGTGCGG-CCCTTTCGGGTC---AACACAAGGTGAACGAGGGACGATCGAGACTAA-------AGAATGCCATCACAATAGGTATGCAACACAGGAAACCGTCTCGCGGCCAAA--GCAAATTGTGCTCTTGGACCTAATAATGAAAAGCCGTGAATGGCG-GGATGTCGCTGCGTAA-GCAGGGATCCAACATACC
		Mostuea_surinamensis              TGCAGGATC-AACCAGGTAGCATTCCT-ACCCCGACGCCGGCACC--GCACGAGCCAAAC-TCTCCTGGAACACCA-GAAGAGTCGATCGAAGCGGGCGCAACAGTCGTTCGCTAATTAGCGATGAACGCTTGTTTTCTTGGGTAAACGAGAGTCGAGGACCCCC-TACCCACCTTGCTTTCCGCATCCGAGAGCCCGGGCGACTCTGCGTGGACCGATGCCACGGCATGCCCA-GCATGCGTGGGTCGGGACACGACCGTCGCCTT-GAGTTTCACCCAGCGCCCAG-CCCTTTCGGGCC---AACGCAAGGCGAACGAGGGACGATTGGGACAAAAAAAAAGAGAATGCCGTCACGGTAGGTATGCAACACAGGAAACCGTCTGGCGGCCAAG--GCAAACGATGCTCTTGGACCAAGAA-TGAAGGGCCTGGACGGGTA-GGCTGTCGCTGCCCAA-GCAGGGATCCAACATACC
		Mostuea_batsii                    tGCAGGATC-AACCAGGTAGCATTCCTCATC--AACGCCGGCACC--GCACGTGACAGAC-GGTCCTAAAAGACTAGGACCAGCCAGGCGAGGCGGGCACGGCAGTCGTTCGCTGGTTAGCGACGAACGCTCATTT-CTTGGATAAATGGGAGGTGAAGTCCCCCCTACCCGCAACGTATTCCGTTTCTGAAAGCTTGAGCAACTCGGCGTGCGCCGATGCCACGATACGCAAATGCATCCATGGATTGGGAAACGGCGAGGGCTTTAATG-TTCACCCCGGACCCGC-CCATTTTGGGCC---AATGCAAGGTGAACTAGGGATGATTGGTACTAA-------AGAATGCCGTCATGATCGGTTTGAAACGCAGGAAACCGTTCCAAGGCCAAG--GCAACTGACGCTCTTGAGCCAAGTAATGAGGGGCAGTGAATTGCAAGGATGACGCTGCAGA--GCAGGGATCCAACATACC
		Strychnos_spinosa                 TGCAGGATCCAACCAGGTAGCATTCCTCACA--GACGTCGACACC--GCGTGGTCCAG-------CGCGACCGCAAGGGTCCGCTTGCCAAAACGGAGACGACAGTCGTGCGCTGGTTAGCGACGAACGCTTCGTTTT--GGGTAAATAGAGGTCAGCAACCCCG-TACCCGCTATGCATTCTGCATCCGAAAGAACAAGCAACTCGCCACGTGCCACAGACACCGCACGACATGCCGTGGGCGTTGAGGATCGCAAGGAGTGCTTCGCGG-TTCATCTAGTTAGCAATCCCTGACGGGC----AGCACAAGACGAACATGGGACAACTTARACAAA-------CGTTG-CCATCACAGTAGGTACGCAGCACAGGAAACCGAACGAACGGCCAAGGCTAACGTCGCACTTGGCCTAG-CAC-TGAATAGGCGTACATGAGA-GGACGTCGCTGCCCAA-GCAGGGATCCAACATACC
		Periploca_sepium                  TGCAGGATC-AACCAGGTAGCATTCCTCAGC--GACATCG-CACC--GCATGAGCAA---------GACAGCCAACGGCTAGCCCGATCAAGACGGGAACGGAAGTCGTTCGCTAGTTTAGCGTGAACGC--GTTATAGGAGCAAAAGGTAGGCCGTGTGACCTACTACCCTCAAAGTTTTCTGAATCCGAGAGTTCAAGCATAGCTCTATGCACC-----------ACAACCGTCAGAGGACAGCGTGGGACACTTCACATGCTACATTTGTTCATCTAGTAAGGAACCACATGAGAGT-----GCACTAGACAAAAGAGGGACG-TTGGGACAAC-------CGAATGCCTTCATG-TAGGTATGCAACACAGGAAACCCAAGACCCGATCAA--GGCAAAATTGCTCTTGCACCATAAT-TGAAGAGGCATGTCAGGTA-GGATGTCGCTGCACGAAGCAGGGATCCAACATACC
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 478 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;