#NEXUS [written Sat Feb 07 17:07:11 KST 2015 by Mesquite version 3.02 (build 681) at Hwansu-PC/192.168.0.11] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=25; TAXLABELS Panax_ginseng_PNY2 Artemisia_annua_BAS Eleutherococcus_senticosus_BAS Betula_platyphylla_BPY Euphorbia_tirucalli_AS Vaccaria_hispanica_BS Lotus_japonicus_AMY2 Glycyrrhiza_glabra_GgbAS Pisum_sativum_OSCPSY Medicago_truncatula_bas1 Arabidopsis_thaliana_LUP1 Bruguiera_gymnorhiza_BgLUS Panax_vietnamensis_DDS Panax_ginseng_DDS Betula_platyphylla_BPW Lotus_japonicus_OSC3 Olea_europaea_OEW Taraxacum_officinale_TRW Crocus_speciosus_OSC1 Arabidopsis_thaliana_CAS1 Pisum_sativum_PSX Glycyrrhiza_glabra_CAS1 Betula_platyphylla_BPX2 Panax_ginseng_PNX Centella_asiatica_CCS ; END; BEGIN CHARACTERS; TITLE OSCs_amino_acid_sequences; DIMENSIONS NCHAR=791; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX Panax_ginseng_PNY2 MWRLMTAKG-GNDPYLYSTNNFIGRQTWEFDPDY-GTPAERAEVEEARLHFWNNR--YQVKPSSDVLWRMQFLKEKNFKQI-IPQVKVEDGEEITYEAATTTLRRAVHYFSALQADDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAEHRIEILRYIYCHQNDDGGWGLHIEGHSTMFCTALSYICMRILGEGRDG--GENNACARARKWILDHGSVTAIPSWGKTWLSILGLFDWSGSNPMPPEFWILPPFLPMHPAKMWCYCRMVYMPMSYLYGKRFVGPITPLILQLREELYAQAYDEINWRKVRHNCAKEDLYYPHPLIQDLMWDSLYIFTEPFLTRWPFNKLR-EKALQTTMKHIHYEDENSRYITIGCVEKVLCMLACWVEDPNGDYFKQHLARIPDYIWVAEDGMKMQSF-GSQEWDTGFAIQALLASDL-IDEIRPTLMKGHDFIKKSQVKENPSGDFKSMHRHISKGSWTFSDQDHGWQVSDCTAEALKCCLLFSRMPTEIVGDKMEDNQLFDAVNMLLSLQS-KNGGLAAWEPAGSSEWLELLNPTEFFEDIVIEHEYVECTSSAIQAMVMFKKLYPGHRKKEIEVSITNAVQYLEDIQMPDGSWYGNWGVCFTYGTWFAMGGLTAAGKTYNNCQTLHKAVDFLIKSQRSDGGWGESYLSCPNKEYTPLEGNRSNLVHTSWAMMGLIHSRQAERDPTPLHRAAKLLINSQMESGDFPQQEITGVFMKNCMLHYAASRNIYPLWALAEYRKNVRLPS-KSV------------------ Artemisia_annua_BAS MWRLKIAEG-RNDPYLYSTNNFVGRQIWEFDPNY-GTPEERAEVEQARVDFWNHR--HEVKPSSDVLWRMQFLREKGFEQT-IPQVKIEDGEEISYEKATTTLRRSVNFFAALQADDGHWPAENAGPLYFMQPLVICLYITGHLNTVFPAEYRKEILRYIYCHQNEDGGWGFHIEGHSTMFCTTLSYICMRLLGEGRDG--GLDGACTKARKWILDHGSVTTIPSWGKTWLSILGVCEWAGTNPMPPEFWILPSFLPMYPAKMWCYCRLVYMPMSYLYGKRFVGPITPLILQLRDELYAQPYDEIKWRSIRHLCAKEDLYYPHPLLQDLMWDSLYVFTEPVLNHWPFNKLR-EKALQTTMKHIHYEDENSRYITIGSVEKALCMLACWVEDPNGVCFKKHIARIPDYLWVAEDGMKMQSF-GSQEWDAGFAIQALMATDL-TDEIGSTLMKGHEFIKASQVKDNPSGDFKSMHRHISKGSWTFSDQDHGWQVSDCTAEALKCCLLFATMPPEIVGEKMKPEQLNDAVNVILSLQS-KNGGLAAWEPAGSSEWLEILNPTEFFADIVIEHEYVECTSSAIQALVMFKKKYPGHRKKEIENFLLGSSGYLEKIQMEDGSWYGNWGVCFTYGTWFALGGLSAVGKTYDNCPAIRKAVKFLLETQLEDGGWGESYKSCPEKKYIPLEGGRSNLVHTAWAMMGLIHSRQAERDATPLHRAAKLLINSQLETGDFPQQEIAGVFMKNCMLHYALYRNIYPMWALADYRKQVLPQL-KGT------------------ Eleutherococcus_senticosus_BAS MWKLKIAEGDENDPYLYSTNNFVGRQTWEFDPDYVGSPGELEEVEEARREFWENR--HKVKACGDRLWRMQFLREKNFKQT-IPQVKVGDDEAVTFEAATTTLRRAVHYFSAVQASDGHWPAEIAGPLYFLPPLVMCVYITGHLDTVFPAEHRKEILRYIYCHQNEDGGWGFHIEGHSIMFCTVLSYICMRILGEGPDG--GVNNACARGRKWILDHGSATAIPSWGKTWLSILGVYEWTGSNPMPPEFWILPSFLPMHPAKMWCYCRMVYMPMSYLYGKRFVGPITPLILQLREELYAQPYNEIKWSKVRHVCAKEDIYYPHPLIQDLIWDSLYILTEPLLTRWPFNKLR-EKALQTSMKHIHYEDENSRYITIGCVEKVLCMLACWVEDPNGDYFKKHLARIPDYIWVAEDGMKMQSF-GSQEWDTGFGIQALLASDL-THEIGPTLMKGHDFIKESQVKDNPSGDFKSMYRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLIFSTMPEEIVGKKMEPELLYNSVNVLLSLQS-KNGGLAAWEPVTGQDWLELLNPTEFFEDIVIEHEYVECTSSAIQALVLFKKVYPGHRKKEIDNFITNAIRYLEDIQMPDGSWYGNWGVCFTYGSWFALGGLAAAGKTYYNCAAVRKAVNFLLESQLDDGGWGESYLSCPKKVYVPLEGNRSNLVHTAWALMGLIHSGQATRDPTPLHRAAKLLINSQMEDGDFPQQELTGVFMRNCMLHYTNYRNVYPLWALAEYRRQVPLPS-QAPN*---------------- Betula_platyphylla_BPY MWRLKIADG-GSDPYIYSTNNFVGRQTWEFDPQA-GSPQERAEVEEARRNFYDNR--YQVKPSGDLLWRMQFLKEKNFKQT-IPPVKVEDGEEITYEKSTAALRRAVHFYSALQASDGHWPAENAGPLFFLPPLVMCMYITGHLNTVFPAEHQKEILRYIYYHQNEDGGWGLHIEGHSTMFCTALSYICMRILGEGPDG--GQDNACARARKWILDHGGVTHMPSWGKTWLSILGIFEWIGSNPMPPEFWILPSFLPMHPAKMWCYCRMVYMPMSYLYGKRFVGPITPLILQLREELYTQPYHQVNWKKVRHLCAKEDIYYPHPLIQDLLWDSLYIFTEPLLTRWPFNKLVREKALQVTMKHIHYEDENSRYITIGCVEKVLCMLACWVEDPNGDYFKKHIARIPDYIWVAEDGIKMQSF-GSQEWDTGFAIQALLASNL-TDEIGPTLARGHDFIKKSQVKDNPSGDFESMHRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLLFSIMPPEIVGEKMEPEQLYDSVNVLLSLQS-KNGGLAAWEPAGAQEWLELLNSTEFFADIVIEHEYIECTASAMQTLVLFKKLYPGHRKKEIENFIKNAAQFLQVIQMPDGSWYGNWGVCFTYGTWFALGGLAAVGKTYNNCLAVRRAVDFLLRAQRDNGGWGESYLSCPKKEYVPLEGNKSNLVHTAWAMMGLIHAGQAERDPTPLHRAAKLIINSQLEDGDFPQQEITGVFMKNCMLHYAAYKNIYPLWALAEYRKHVPLPLGKNLNQVVNCIGQSLYKKYK-- Euphorbia_tirucalli_AS MWKLKIAEG-GNDEYLYSTNNYVGRQTWVFDPQP-PTPQELAQVQQARLNFYNNR--YHVKPSSDLLWRFQFLREKNFKQT-IPQAKINEGEDITYEKATTALRRAVHFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLDTVFPAPHRLEILRYIYCHQNEDGGWGLHIEGHSTMFCTVLSYICMRLLGEGPNG--GQDNACSRARKWIIDHGGATYIPSWGKTWLSILGVYEWSGSNPMPPEFWILPTFLPMHPAKMWCYCRMVYMPMSYLYGKRFVGPITPLILQLRQELHTQPYHHINWTKTRHLCAHEDVYYPHPLIQDLMWDSLYIFTEPLLTRWPFNKIIRKKALEVTMKHIHYEDENSRYITIGCVEKVLCMLACWAEDPNGVPFKKHLARIPDYMWVAEDGMKMQSF-GSQQWDTGFAIQALLASNL-TEEIGQVLKKGHDFIKKSQVKENPSGDFKSMHRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLLFSMMPPEIVGEKMDAQHLYNAVNILISLQS-KNGGLAAWEPAGAQQWLEMLNPTEFFADIVIEHEYVECTASAIHALIMFKKLYPGHRKKEIENFITNAVKYLEDVQTADGGWYGNWGVCFTYGTWFAVGGLAAAGKNYNNCAAMRKAVDFLLRTQKQDGGWGESYLSCPHKKYVPLEDNRSNLVHTSWALMGLISAGQMDRDPTPLHRAAKLLINSQLEDGDFPQQEITGVFMKNCMLHYAAYRNIYPLWALAEYRNRVPLPS-TTL------------------ Vaccaria_hispanica_BS MWRLKIAEG-ANDPYLYSTNNFVGRQTWEFDTDY-GTPEAIKEVEEARQDFYKNR--FQVKPCGDLLWRFQFLREKNFKQT-IPQVKLGDGEEVTYEAATATVKRAVNYLAAIQAEDGHWPAEIAGPQFFLPPLVFCLYITGHLNSVFNVHHREEILRSIYYHQNEDGGWGLHIEGHSTMFCTALNYICLRMLGVGPDE--GDDNACPRARKWILDHGSVTHIPSWGKTWLSILGLFDWSGSNPMPPEFWILPSFMPMYPAKMWCYCRMVYMPMSYLYGKRFVGPITPLIKQLREELFNEPYEDIKWKKVRHFCAQEDLYYPHPLIQDLMWDSLYLFTEPLLTRWPFNGLIRKKALQVTMDHIHYEDENSRYLTIGCVEKVLCMLACWVEDPNGVCYKKHLARVPDYVWIAEDGLKMQSF-GSQQWDCGFAVQALLASNLSLDEIGPALKKGHYFIKESQVKDNPSGDFKSMHRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLVLSTMPPEIVGEKMDPERLYDSVNILLSLQS-ENGGLSAWEPAGAQAWLELLNPTEFFADIVIEHEYVECTGSAIQALVLFKKLYPGHRKKEIENFILKASKYLEDTQYPNGSWYGNWGVCFTYGTWFALGGLTAAGRTFSNCAAIRKGVEFLLKSQKEDGGWGESYISCPKKDFVPLEGP-SNLTQTAWALMGLIYTRQMERDPTPLHRAAKLLINSQLESGDFPQQEITGVFMKNCMLHYPMYRSIYPMWALAEYRKHVPLRLN--------------------- Lotus_japonicus_AMY2 MWKLKVADG-GKDPYIFSTNNFVGRQTWEYDPDA-GTPEERAQVEEARQDFYNNR--YKVKPCGDLLWRFQVLRENNFKQT-IPSVKIEDGEEITYEKATTTLKRAAHHLAALQTSDGHWPAQIAGPLFFQPPLVFCMYITGHLNSVFPEEYRKEILRYIYVHQNEDGGWGLHIEGHSTMFCTALNYICMRMLGEGPDG--GQDNACARARKWILDHGGVTHIPSWGKTWLSILGIFDWKGSNPMPPEFWILPSFLPMHPAKMWCYCRLVYMPMSYLYGKRFVGPITPLILQLREELFTQPYEKVNWKKARHQCAKEDIYYPHPLIQDLMWDSLYLFTEPLLTRWPFNKLVREKALEVTMKHIHYEDENSRYITIGCVEKVLCMLACWVEDPNGDAFKKHLARIPDYLWVSEDGMCMQSF-GSQEWDAGFAVQALLATNL-VDELGPTLAKGHDFIKKSQVRDNPSGDFKNMHRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLLLSMLPPDIVGEKMEPECLFDSVNLLLSLQS-KKGGLAAWEPAGAQEWLELLNPTEFFADIVVEHEYVECTGSAIGALVLFKKLYPGHRKKEIENFISEAVRFLEDTQTADGSWYGNWGVCFTYGSWFALGGLAAAGKTYANCAAIRKAVKFLLTTQRGDGGWGESYLSSPKKIYVPFEGNRSNVVHTAWALMGLIHSGQAERDPTPLHRAAKLLINSQLEEGDWPQQEITGVFMKNCMLHYPMYRDIYPMWALAEYRRRVPLPSTAV------------------- Glycyrrhiza_glabra_GgbAS MWRLKIAEG-GKDPYIYSTNNFVGRQTWEYDPDG-GTPEERAQVDAARLHFYNNR--FQVKPCGDLLWRFQILRENNFKQT-IASVKIGDGEEITYEKATTAVRRAAHHLSALQTSDGHWPAQIAGPLFFLPPLVFCMYITGHLDSVFPEEYRKEILRYIYYHQNEDGGWGLHIEGHSTMFCTALNYICMRILGEGPDG--GQDNACARARKWIHDHGGVTHIPSWGKTWLSILGVFDWCGSNPMPPEFWILPSFLPMHPAKMWCYCRLVYMPMSYLYGKRFVGPITPLILQLREELFTEPYEKVNWKKARHQCAKEDLYYPHPLLQDLIWDSLYLFTEPLLTRWPFNKLVREKALQVTMKHIHYEDETSRYITIGCVEKVLCMLACWVEDPNGDAFKKHLARVPDYLWVSEDGMTMQSF-GSQEWDAGFAVQALLATNL-VEEIAPTLAKGHDFIKKSQVRDNPSGDFKSMYRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLLLSMLPPEIVGEKMEPERLYDSVNVLLSLQS-KKGGLSAWEPAGAQEWLELLNPTEFFADIVVEHEYVECTGSAIQALVLFKKLYPGHRKKEIENFIANAVRFLEDTQTADGSWYGNWGVCFTYGSWFALGGLAAAGKTFANCAAIRKAVKFLLTTQREDGGWGESYLSSPKKIYVPLEGSRSNVVHTAWALMGLIHAGQAERDPAPLHRAAKLIINSQLEEGDWPQQEITGVFMKNCMLHYPMYRDIYPMWALAEYRRRVPLPSTPVCLT---------------- Pisum_sativum_OSCPSY MWRLKIAEG-GNDPYLFSTNNFVGRQTWEYDPEA-GSEEERAQVEEARRNFYNNR--FEVKPCGDLLWRFQVLRENNFKQT-IGGVKIEDEEEITYEKTTTTLRRGTHHLATLQTSDGHWPAQIAGPLFFMPPLVFCVYITGHLDSVFPPEHRKEILRYIYCHQNEDGGWGLHIEGHSTMFCTALNYICMRILGEGPDG--GEDNACVRARNWIRQHGGVTHIPSWGKTWLSILGVFDWLGSNPMPPEFWILPSFLPMHPAKMWCYCRLVYMPMSYLYGKRFVGPITPLILQLREELHTEPYEKINWTKTRHLCAKEDIYYPHPLIQDLIWDSLYIFTEPLLTRWPFNKLVRKRALEVTMKHIHYEDENSRYLTIGCVEKVLCMLACWVEDPNGDAFKKHIARVPDYLWISEDGMTMQSF-GSQEWDAGFAVQALLATNL-IEEIKPALAKGHDFIKKSQVTENPSGDFKSMHRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLLLSLLPPEIVGEKMEPERLFDSVNLLLSLQS-KKGGLAAWEPAGAQEWLELLNPTEFFADIVVEHEYVECTGSAIQALVLFKKLYPGHRKKEIENFIFNAVRFLEDTQTEDGSWYGNWGVCFTYGSWFALGGLAAAGKTYTNCAAIRKGVKFLLTTQREDGGWGESYLSSPKKIYVPLEGNRSNVVHTAWALMGLIHAGQSERDPTPLHRAAKLLINSQLEQGDWPQQEITGVFMKNCMLHYPMYRDIYPLWALAEYRRRVPLP----------------------- Medicago_truncatula_bas1 MWKLKIGEG-KNEPYLFSTNNFVGRQTWEYDPEA-GSEEERAQVEEARKNFYDNR--FKVKPCGDLLWRFQVLRENNFMQT-IDGVKIEDGEEITYEKATTTLRRGTHHLAALQTSDGHWPAQIAGPLFFMPPLVFCVYITGHLDSVFPREHRKEILRYIYCHQNEDGGWGLHIEGHSTMFCTALNYICMRILGEGPDG--GQDNACARARNWIRAHGGVTYIPSWGKTWLSILGLFDWLGSNPMPPEFWILPSFLPMHPAKMWCYCRLVYMPMSYLYGKRFVGPITPLILQLREELHTQPYEKINWTKSRHLCAKEDIYYPHPLIQDLIWDSLYIFTEPLLTRWPFNKLVRKRALEVTMKHIHYEDENSRYLTIGCVEKVLCMLACWVEDPNGDAYKKHLARVQDYLWMSEDGMTMQSF-GSQEWDAGFAVQALLAANL-NDEIEPALAKGHDFIKKSQVTENPSGDFKSMHRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLLLSMLPPEIVGEKMEPERLYDSVNVLLSLQS-KKGGLAAWEPAGAQEWLELLNPTEFFADIVVEHEYVECTGSAIQALVLFKKLYPGHRKKEIENFISEAVRFIEDIQTADGSWYGNWGVCFTYGSWFALGGLAAAGKTYTNCAAIRKAVKFLLTTQREDGGWGESYLSSPKKIYVPLEGSRSNVVHTAWALMGLIHAGQAERDPTPLHRAAKLLINSQLEEGDWPQQEITGVFMKNCMLHYPMYRDIYPLWALAEYRRRVPLPSTAV------------------- Arabidopsis_thaliana_LUP1 MWKLKIGKGNGEDPHLFSSNNFVGRQTWKFDHKA-GSPEERAAVEEARRGFLDNR--FRVKGCSDLLWRMQFLREKKFEQG-IPQLKATNIEEITYETTTNALRRGVRYFTALQASDGHWPGEITGPLFFLPPLIFCLYITGHLEEVFDAEHRKEMLRHIYCHQNEDGGWGLHIESKSVMFCTVLNYICLRMLGENPE-----QDACKRARQWILDRGGVIFIPSWGKFWLSILGVYDWSGTNPTPPELLMLPSFLPIHPGKILCYSRMVSIPMSYLYGKRFVGPITPLILLLREELYLEPYEEINWKKSRRLYAKEDMYYAHPLVQDLLSDTLQNFVEPLLTRWPLNKLVREKALQLTMKHIHYEDENSHYITIGCVEKVLCMLACWVENPNGDYFKKHLARIPDYMWVAEDGMKMQSF-GCQLWDTGFAIQALLASNL-PDETDDALKRGHNYIKASQVRENPSGDFRSMYRHISKGAWTFSDRDHGWQVSDCTAEALKCCLLLSMMSADIGGQKIDDEQLYDSVNLLLSLQS-GNGGVNAWEPSRAYKWLELLNPTEFMANTMVEREFVECTSSVIQALDLFRKLYPDHRKKEINRSIEKAVQFIQDNQTPDGSWYGNWGVCFIYATWFALGGLAAAGETYNDCLAMRNGVHFLLTTQRDDGGWGESYLSCSEQRYIPSEGERSNLVQTSWAMMALIHTGQAERDLTPLHRAAKLIINSQLENGDFPQQEIVGAFMNTCMLHYATYRNTFPLWALAEYRKVVFIVN---------------------- Bruguiera_gymnorhiza_BgLUS MWRLKIAEG-GNNPYIYSTNNFVGRQTWEFDPEA-GTPEERAQVEEARENFWRDR--FLIKPSSDLLWRFQFLSEKKFKQR-IPQVKVQDGEEITREIATTALRRSVHLVSALQASDGHWCAENSGPMFFVPPMVFSLYITGHLNAVFSAEHCKEILRYIYCHPNEDGGWGLHIEGHSAMFSTVLNYNWLGKLGEGRDG--GKDNACERARRRILDHGSATAISSWGKTWLAILGVYEWDGCNPMPPEFWAFPTFFPIHPARMLCYCRLTYMAMSYLYGKKFVGPITPLILQLREEIYNEPYDQINWSRMRHLCAKEDNYYAHTLTQIILWDAIYMLGEPLLKRWPFNKLR-EKALKITMDHIHYEDENSQYITIGSVEKPLLMLACWHEDPNGDAFKKHLARIPDYVWLGEDGIKIQSF-GSQVWDTSFVLQALIASNL-PSETGPTLEKGHNFIKNSQVTQNPSGDFRRMFRHISKGSWTFSDKDHGWQVSDCTAESLKCCLLFSMMPPELVGEKMGPQRMYDAVNVIISLQS-KNGGCSAWEPAGAGSWMEWLNPVEFLADLVIEHEYVECTSSSLQALVLFKKLYPEHRRKEIEIFILNAVRFTEEIQQPDGSWYGNWGICFLSGTWFGLKGLAAAGKTYYNCTAVRKGVEFLLQTQRDDGGWGESYLSCPKKIYVPLEGNRSNLVQTALAMMGLILGGQGERDPTPLHRAAKLLINSQTELGDFPQQELSGCFMRNCMLHYSEYRDIFPTWALAEYCKLFPLPSKND------------------- Panax_vietnamensis_DDS MWKLKVAQG--NDPYLYSTNNFVGRQYWEFLPEA-GTPEEREEVEKARKDYVNNKKLHGIHPCSDMLMRRQLIKESGIDLLSIPPVRLDENEQVNYDAVTTAVKKALRLNRAIQAHDGHWPAENSGSLLYTPPLIIALYISGTIDTTLTKQHKKELIRYVYNHQNEDGGWGSYIEGSSTMIGSVLSYVMLRLLGEGSAESDDGNGAVERGRKWILDHGGAAGIPSWGKTYLAVLGVYEWEGCNPLPPEFWLFPSFFPFHPAKMWIYCRCTYMPMSYLYGKRYHGPITDLVLSLRQEIYNIPYEQIKWNLQRHNCCKEDLYYPHTLVQDLVWDGLHYFSEPFLKRWPFNKLR-KRGLKRVVELMRYGATETRFITTGCGEKALQIMSWWAEDPNGDEFKHHLARVPDFLWIAEDGMTVQSF-GSQLWDCILATQAIIATNM-VEEYGDSLKKAHFYIKESQIKENPRGDFLKMCRQFTKGAWTFSDQDHGCVVSDCTAEALKCLLLLSQMPQDIVGEKPEVERLYEAVNVLLYLQSRVSGGFAVWEPPVPKPYLEMLNPSEIFADIVVEREHIECTASVIKGLMAFKCLHPGHRQKEIENSVVKAICYLERNQMPDGSWYGFWGICFLYGTFFTLSGFASAGRTYDNSEAVRKGVKFFLSTQNEEGGWGESLESCPSEKFTPLKGNRTNLVQTSWAMLGLMFGGQAERDPTPLHRAAKLLINAQMDNGDFPQQEITGVYCKNSMLHYAEYRNIFPLWALGEYRKRVWLPKHQQLKI---------------- Panax_ginseng_DDS MWKLKVAQG--NDPYLYSTNNFVGRQYWEFQPDA-GTPEEREEVEKARKDYVNNKKLHGIHPCSDMLMRRQLIKESGIDLLSIPPLRLDENEQVNYDAVTTAVKKALRLNRAIQAHDGHWPAENAGSLLYTPPLIIALYISGTIDTILTKQHKKELIRFVYNHQNEDGGWGSYIEGHSTMIGSVLSYVMLRLLGEGLAESDDGNGAVERGRKWILDHGGAAGIPSWGKTYLAVLGVYEWEGCNPLPPEFWLFPSSFPFHPAKMWIYCRCTYMPMSYLYGKRYHGPITDLVLSLRQEIYNIPYEQIKWNQQRHNCCKEDLYYPHTLVQDLVWDGLHYFSEPFLKRWPFNKLR-KRGLKRVVELMRYGATETRFITTGNGEKALQIMSWWAEDPNGDEFKHHLARIPDFLWIAEDGMTVQSF-GSQLWDCILATQAIIATNM-VEEYGDSLKKAHFFIKESQIKENPRGDFLKMCRQFTKGAWTFSDQDHGCVVSDCTAEALKCLLLLSQMPQDIVGEKPEVERLYEAVNVLLYLQSRVSGGFAVWEPPVPKPYLEMLNPSEIFADIVVEREHIECTASVIKGLMAFKCLHPGHRQKEIEDSVAKAIRYLERNQMPDGSWYGFWGICFLYGTFFTLSGFASAGRTYDNSEAVRKGVKFFLSTQNEEGGWGESLESCPSEKFTPLKGNRTNLVQTSWAMLGLMFGGQAERDPTPLHRAAKLLINAQMDNGDFPQQEITGVYCKNSMLHYAEYRNIFPLWALGEYRKRVWLPKHQQLKI---------------- Betula_platyphylla_BPW MWKLKIAEG---GPGLVSGNDFIGRQHWEFDPDA-GTPQERAEVEKVREEFTKNR--FQMKQSADLLMRMQLRKENPCQPI-PPPVKVKETEVITEEAVITTLRRSLSFYSSIQAHDGHWPGESAGPLFFLQPFVMALYITGDLNTIFSPAHQKEIIRYLYNHQNEDGGWGFHIEGHSTMFGSALSYIALRILGEGLE-D-GEDGAMAKSRKWILDHGGLVAIPSWGKFWVTVLGLYEWSGCNPLPPEFWFLPDIFPIHPGKMLCYCRLVYMPMSYLYGKRFVGPITGLIQSLRQELYNEPYHQINWNKARSTVAKEDLYYPHPLIQDLLWGFLHHVAEPVLTRWPFSMLR-EKALKAAIGHVHYEDENSKYLCIGSVEKVLCLIACWAEDPNGEAYKLHLGRIPDNYWVAEDGLKIQSF-GCQMWDAGFAIQAILSCNL-NEEYWPTLRKAHEFVKASQVPENPSGDFKAMYRHINKGAWTFSMQDHGWQVSDCTAEGLKVAILFSQMPPDLVGEKIEKERLYDAVNVILSLQS-SNGGFPAWEPQRAYGWLEKFNPTEFFEDTLIEREYVECTSPAVHGLALFRKFYPRHRGTEIDSSIYRGIQYIEDVQEPDGSWYGHWGICYTYGTWFAVGALAACGRNYKNCPALRKSCEFLLSKQLPNGGWGESYLSSQNKVWTNIEGNRANLVQTAWALLSLIDARQAEIDPTPIHRGVRVLINSQMEDGDFPQQEITGVFMRNCTLNYSSYRNIFPIWALGEYRRRVLFA----------------------- Lotus_japonicus_OSC3 MWKLKVAEG---GKGLVSVSNFIGRQHWVFDPNA-GTPQEHEEIERMRQEFTKNR--FSIKQSADLLMRMQLRKENPCGPI-PPAVKLRDVEKVTAEALITTIRRSITFYSSIQAHDGHWPAESAGPLFFVQPLVMALYITGSLDDVLGPQHKKEIIRYLYNHQNEDGGWGFHIEGHSTMFGSALSYIALRVLGQSLE-D-GEDMAVARGRKWILDHGGLVAIPSWGKFWVTVLGVYEWSGCNPLPPEFWLLPKIFPIHPGKMLCYCRLVYMPMSYLYGKKFVGPITALVRSLRKELYNEPYDRVDWNKARNTVAKEDLYYPHPLIQDMLWGFLHHVGERVLNTWPFSMLR-QKAIEVAINHVRYEDETTRYLCIGSVEKVLYLIARWVEDPNSEAYKLHLARIPDYFWLAEDGLKIQSF-GCQMWDAAFAIQAILSGNV-SEEYGPTLKKAHHFVKASQVRENPSGDFKAMYRHISKGAWTFSMHDHGWQVSDCTAEGLKVALLLSEMSDDLVGAKMETEQFYDAVNVILSLQS-SNGGFPAWEPQRAYQWLEKFNPTEFFEETLIEREYVECTGSAMQALALFRKLYPKHRRKEIDRCISKAIRYIENTQNPDGSWYGCWGICYTYGTWFAVEGLTACGKNFQNSVTLRRACKFLLSKQLPNGGWGESYLSSQDKVYTNIEGKRANLVQSSWALLSLMRAGQAEIDPTPIHRGIRLLINSQMDDGDFPQQEITGVFMRNCTLNYSSYRNIFPIWALGEYRRRVLCA----------------------- Olea_europaea_OEW MWKLKIADG--TGPWLTTTNNHIGRQHWEFDPEA-GTPDERVEVERLREEFKKNR--FRTKQSADLLMRMQLVKENQRVQI-PPAIKIKETEGITEEAVITTLRRAISFYSTIQAHDGHWPAESAGPLFFLPPLVLALYVTGAINVVLSREHQKEITRYIYNHQNEDGGWGIHIEGHSTMFGSVLSYITLRLLGEGQE-D-GEDKAVARGRKWILDHGGAVGIPSWGKFWLTVLGVYEWDGCNPMPPEFWLLPNFSPIHPGKMLCYCRLVYMPMSYLYGKRFVGPITGLVLSLRQEIYTEPYHGINWNRARNTCAKEDLYYPHPLAQDMLWGFLHHFAEPVLTRWPFSKLR-EKALKVAMEHVHYEDMNSRYLCIGCVEKVLCLIACWVEDPNSEAYKRHIARIPDYFWVAEDGLKMQSF-GCQMWDAAFAIQAILSSNL-AEEYGPTLMKAHNFVKASQVQENPSGDFNEMYRHTSKGAWTFSMQDHGWQVSDCTAEGLKAALLFSQMPIELVGAEIETGHLYDAVNVILTLQS-ASGGFPAWEPQKAYRWLEKLNPTEFFEDVLIERDYVECTSSAVQALKLFKQLHPGHRRKEIASCISKAIQYIEATQNPDGSWDGSWGICFTYGTWFAVEGLVACGKNYHNSPTLRRACEFLLSKQLPDGGWSESYLSSSNKVYTNLEGNRSNLVQTSWALLSLIKAGQVEIDPGPIHRGIKLLVNSQMEDGDFPQEEITGAFMKNCTLNYSSYRNIFPIWALGEYRRRILHAQT--------------------- Taraxacum_officinale_TRW MWKLKIAEGG-DDEWLTTTNNHVGRQHWQFDPDA-GTEEERAEIEKIRLNFKLNR--FQFKQSADLLMRTQLRKENPINKI-PDAIKLNETEEVTNDAVTTTLKRAISFYSTIQAHDGHWPAESAGPLFFLPPLVIALYVTGAMNDILTPAHQLEIKRYIYNHQNEDGGWGLHIEGHSTIFGSVLSYITLRLLGEEADSV-AEDMALVKGRKWILDHGGAVGIPSWGKFWLTILGVYEWGGCNPMPPEFWLMPKFFPIHPGKMLCYCRLVYMPMSYLYGKRFVGKITELVRDLRQELYTDPYDEINWNKARNTCAKEDLYYPHPFVQDMVWGVLHNVVEPVLTSRPISTLR-EKALKVAMDHVHYEDKSSRYLCIGCVEKVLCLIATWVEDPNGDAYKRHLARIPDYFWVAEDGMKMQSF-GCQMWDAAFAIQAIFSSNL-TEEYGPTLKKAHEFVKASQVRDNPPGDFSKMYRHTSKGAWTFSIQDHGWQVSDCTAEGLKVSLLYSQMNPKLVGEKVETEHLYDAVNVILSLQS-ENGGFPAWEPQRAYAWLEKFNPTEFFEDVLIEREYVECTSSAIQGLTLFKKLHPGHRTKEIEHCISRAVKYVEDTQESDGSWYGCWGICYTYGTWFAVDALVACGKNYHNCPALQKACKFLLSKQLPDGGWGESYLSSSNKVYTNLEGNRSNLVHTSWALISLIKAGQAEIDPTPISNGVRLLINSQMEEGDFPQQEITGVFMKNCNLNYSSFRNIFPIWALGEYRRIVQNI----------------------- Crocus_speciosus_OSC1 MWRLKIAEG--GGPWLRTKNNHVGRQVWEFDPSL-GTPEEIAEVERVREAFRETR--FEKKHSADLLMRLQFAKENPLEMN-YPIIKIEEHEDVTEELVVTSLRKAISRVSTLQAHDGHWPGDYGGPMFLMPGLIITLYVTGALNTVLTSEHQKEIRRYLYNHQNEDGGWGLHIEGESTMFGSALTYVILRLLGEGPD---DGDGAMEKGRKWILDHGSATAITSWGKMWLSVLGVFDWSGNNPLPPEMWLLPYFLPVHPGRMWCHCRMVYLPMSYIYGKRFTGPITPLILSLRKELFNLPFDQLDWNKARNECAKEDLYYPHPFIQDVLWASLHKFVEPILMHWPGSKLR-EKAVNTAMQHVHYEDENTRYICIGPVNKVLNMLCCWIEDPNSEAFKLHLPRVMDYLWLAEDGMKMRGYNGSQLWDTAFTVQAIISTDL-FEEFGLALTKAHEFIKKTQVLEDCPGDLNFWYRHISKGAWPFSTADHGWPISDCTSEGLKAALLLSKISPEIVGDPLDGKSLYDAVNVILSLMN-NDGGFATYELTRSYAWLEIINPAETFGDIVIDYPYVECTSAAIQALTLFKKTYPGHRREEIDNCIRKSARFIEKIQLADGSWYGSWGVCFTYGIWFGMKGLLAAGRTYETSSCIRKACDFLLSKQVASGGWGESYLSCQNKVYTNLEGNRAHAVNTGWAMLALIDAGQGERDPKPLHRAAKVLINMQMENGEFPQQEIMGVFNKNCMISYSEYRNIFPIWALGEYRRRVLCSQFH-------------------- Arabidopsis_thaliana_CAS1 MWKLKIAEG--GSPWLRTTNNHVGRQFWEFDPNL-GTPEDLAAVEEARKSFSDNR--FVQKHSADLLMRLQFSRENLISPV-LPQVKIEDTDDVTEEMVETTLKRGLDFYSTIQAHDGHWPGDYGGPMFLLPGLIITLSITGALNTVLSEQHKQEMRRYLYNHQNEDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGPN---DGDGDMEKGRDWILNHGGATNITSWGKMWLSVLGAFEWSGNNPLPPEIWLLPYFLPIHPGRMWCHCRMVYLPMSYLYGKRFVGPITSTVLSLRKELFTVPYHEVNWNEARNLCAKEDLYYPHPLVQDILWASLHKIVEPVLMRWPGANLR-EKAIRTAIEHIHYEDENTRYICIGPVNKVLNMLCCWVEDPNSEAFKLHLPRIHDFLWLAEDGMKMQGYNGSQLWDTGFAIQAILATNL-VEEYGPVLEKAHSFVKNSQVLEDCPGDLNYWYRHISKGAWPFSTADHGWPISDCTAEGLKAALLLSKVPKAIVGEPIDAKRLYEAVNVIISLQN-ADGGLATYELTRSYPWLELINPAETFGDIVIDYPYVECTSAAIQALISFRKLYPGHRKKEVDECIEKAVKFIESIQAADGSWYGSWAVCFTYGTWFGVKGLVAVGKTLKNSPHVAKACEFLLSKQQPSGGWGESYLSCQDKVYSNLDGNRSHVVNTAWAMLALIGAGQAEVDRKPLHRAARYLINAQMENGDFPQQEIMGVFNRNCMITYAAYRNIFPIWALGEYRCQVLLQQGE-------------------- Pisum_sativum_PSX MWKLKVAEG--GTPWLRTLNNHVGRQVWEFDPHS-GSPQDLDDIETARRNFHDNR--FTHKHSDDLLMRLQFAKENPMNEV-LPKVKVKDVEDVTEEAVATTLRRGLNFYSTIQSHDGHWPGDYGGPMFLMPGLVITLSVTGALNAVLTDEHRKEMRRYLYNHQNKDGGWGLHIEGPSTMFGSVLCYVTLRLLGEGPN---DGEGDMERGRDWILEHGGATYITSWGKMWLSVLGVFEWSGNNPMPPEIWLLPYALPVHPGRMWCHCRMVYLPMSYLYGKRFVGPITPTVLSLRKELFTVPYHDIDWNQARNLCAKEDLYYPHPLVQDILWATLHKFVEPVFMNWPGKKLR-EKAIKTAIEHIHYEDENTRYICIGPVNKVLNMLCCWVEDPNSEAFKLHLPRIYDYLWVAEDGMKMQGYNGSQLWDTAFAAQAIISTNL-IDEFGPTLKKAHAFIKNSQVSEDCPGDLSKWYRHISKGAWPFSTADHGWPISDCTAEGLKAVLLLSKIAPEIVGEPLDSKRLYDAVNVILSLQN-ENGGLATYELTRSYTWLEIINPAETFGDIVIDCPYVECTSAAIQALATFGKLYPGHRREEIQCCIEKAVAFIEKIQASDGSWYGSWGVCFTYGTWFGIKGLIAAGKNFSNCLSIRKACEFLLSKQLPSGGWAESYLSCQNKVYSNLEGNRSHVVNTGWAMLALIEAEQAKRDPTPLHRAAVCLINSQLENGDFPQEEIMGVFNKNCMITYAAYRCIFPIWALGEYR-RVLQAC---------------------- Glycyrrhiza_glabra_CAS1 MWKLKIAEG--GSPWLRTVNNHVGRQVWEFDPKL-GSPEDLLEIEKARQNFHDNR--FTHKHSADLLMRIHFAKENPMNEV-LPKVRVKDIEDVTEETVKTTLRRAINFHSTLQSHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLTEEHRKEICRYLYNHQNKDGGWGLHIEGPSTMFGSVLNYVALRLLGEGPN---DRQGEMEKGRDWILGHGGATFITSWGKMWLSVLGVYEWSGNNPLPPEIWLLPYVLPIHPGRMWCHCRMVYLPMSYLYGKRFVGPITPTILSLRKELYTIPYHDIDWNQARNLCAKEDLYYPHPLVQDILWASLHKFLEPILMHWPGKKLR-EMAIKTAIEHIHYEDDNTRYLCIGPVNKVLNMLCCWVEDPNSEAFKLHLPRIYDYLWIAEDGMKMQGYNGSQLWDTAFTAQAIISSNL-IEEYGPTLRKAHTYIKNSQVLEDCPGDLSKWYRHISKGAWPFSTADHGWPISDCTAEGLKAVLLLSKIAPEIVGEPLDAKRLYDAVNVILSLQN-EDGGFATYELTRSYTWLELINPAETFGDIVIDYPYVECTSAAIQALTSFKKLYPGHRREEIQCCIEKAASFIEKTQASDGSWYGSWGVCFTYGTWFGVKGLIAAGKSFNNCSSIRKACEFLLSKQLPSGGWGESYLSCQNKVYSNVESNRSHVVNTGWAMLALIDAEQAKRDPTPLHRAAVYLINSQMENGDFPQQEIMGVFNKNCMITYAAYRNVFPIWALGEYRHRVLQSQ---------------------- Betula_platyphylla_BPX2 MWKLKIAEG--GSPWLRTLNNHVGRQVWEFDPKL-GSPEELAEIERARETSLKVR--FEKKHSSDLLMRIQFAKENPRGAV-LPQVKVNETEDVTEEMVTRMLRRAISFHSTLQAHDGHWAGDYGGPMFLMPGLVITLSITGALNTVLSEEHKKEMCRYLYNHQNKDGGWGLHIEGPSTMFGTVLSYVTLRLLGEGAN---DGQGAIERGRKWILDHGSATAIISWGKMWLSVLGAFEWSGNNPLPPEIWLLPYMLPVHPGRMWCHCRMVYLPMSYLYGKRFVGPITPTVMSLRKELYSVPYHEIDWNQARNLCAKE?LYYPHPLVQDILWASLHKLVEPVLMRWPGKRLR-EKALRTVLEHIHYEDENTRYICIGPVNKVLNMLCCWVEDPNSEAFKLHLPRINDYLWIAEDGMKMQGYNGSQLWDTAFAVQAIISTNL-FEEYGPTLEKAHMYIKKSQVREDCPGDLDFWYRHISKGAWPFSTADHGWPISDCTAEGLKAALLLSKIPPDVVGEPLVEERLYDAVNVILSLQN-ADGGFATYELTRSYPWLELINPAETFGDIVIDYNYVECTSAAIQALTSFKKSYPKHREEEVDVCIKRAAMFTEKIQASDGSWYGSWGVCFTYGTWFGVKGLVAAGKNFNDCFGIRKACDFLLSKQLPSGGWGESYLSCQNKVYSHVEGNRSHVVNTGWAMLALIEAGQAERDPTPLHRAARVLINSQMENGDFPQEEIMGVFNRNCMITYAAYRNIFPIWALGEYRCRVLQAP---------------------- Panax_ginseng_PNX MWKLKIAEG--GNPWLRTLNDHVGRQIWEFDPNI-GSPEELAEVEKVRENFRNHR--FEKKHSADLLMRIQFANENPGSVV-LPQVKVNDGEDISEDKVTVTLKRAMSFYSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGVLNVVLSKEHKREICRYLYNHQNRDGGWGLHIEGPSTMFGTVLNYVTLRLLGEGAN---DGQGAMEKGRQWILDHGSATAITSWGKMWLSVLGVFEWSGNNPLPPETWLLPYILPIHPGRMWCHRRMVYLPMSYLYGKRFVGPITPTVLSLRKEVFSVPYHEIDWNQARNLCAKEDLYYPHPLIQDILWASLDKVWEPIFMHWPAKKLR-EKSLRTVMEHIHYEDENTRYICIGPVNKVLNMLCCWVEDPNSEAFKLHLPRLHDFLWLAEDGMKMQGYNGSQLWDTAFAVQAIISTNL-AEEYGPTLRKAHTFMKNSQVLDDCPGDLDAWYRHVSKGAWPFSTADHGWPISDCTAEGFKAVLQLSKLPSELVGEPLDAKRLYDAVNVILSLQN-SDGGYATYELTRSYSWLELVNPAETFGDIVIDYPYVECTSAAIQALTAFKKLFPGHRREEIQHSIEKAALFIEKIQSSDGSWYGSWGVCFTYGTWFGIKGLVTAGRTFSSCASIRKACDFLLSKQVASGGWGESYLSCQNKVYTNLEGNRSHVVNTGWAMLALIDAGQAERDATPLHRAAKLLINSQMENGDFPQEEIMGVFDKNCMITYAAYRNIFPIWALGEYRCRVLQGPS--------------------- Centella_asiatica_CCS MWKLKVAEG--GNPWLRTVNNHVGRQIWEFDPKL-GSPEELAEIEKARENFHNHR--FEKQHSSDLLMRLQFANENPRHEV-LPQVKVKDIGDISEDKVTITLKRALSFYSTLQANDGHWAGDYGGPMFLMPGLVITLSITEALNAILSKEHKREICRYLYNHQNRDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGTK---DGQGAMEKGRQWILDHGGATAITSWGRMWLSVLGVFEWSGNNPLPPEIWLFPYNLPFHPGRMWCHCRMVYLPMSYLYGKRFVGPITPTVLSLRKELFTVPYHEIDWNQARNLCAKEDLYYPHPLVQDILWASIDKVLEPILMRWPGKKLR-EKALRTVMEHIHYEDENTRYICIGPVNKVLNMLCCWAEDPNSEAFKLHLPRLYDFLWLAEDGMKMQGYNGSQLWDTAFAVQAIISTSL-TEYCGPTLRKAHTFMKDSQVLDDCPGDLDFWYRHISKGAWPFSTADHGWPISDCTAEGFKAVLLLSKFPAELVGEPLDAKRLYDAVNVILSLQN-SDGGYATYELTRSYRWLELINPAETFGDIVIDYPYAECTSAAIQALSAFKKLYPGHRREEIQCSIEKAADFIEKIQASDGSWYGSWGVCFTYGTWFGVKGLISAGRTFSNCSSIRKACYFLLSKQLASGGWGESYLSCQNKVYTNLEGERSHVVNTGWAMLALIEAGQAERDATPLHHAAKLLINSQMENGDFPQEEIMGVFNKNCMITYAAYRNIFPIWALGDYRCRVLLAP---------------------- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 791; END; BEGIN NOTES; TAXABITS TAXA = Taxa NAME = newlyAddedTaxon on = ; SUT TAXA = Taxa TAXON = 1 NAME = color INTEGER = 10; SUT TAXA = Taxa TAXON = 2 NAME = color INTEGER = 10; SUT TAXA = Taxa TAXON = 3 NAME = color INTEGER = 10; SUT TAXA = Taxa TAXON = 4 NAME = color INTEGER = 10; SUT TAXA = Taxa TAXON = 5 NAME = color INTEGER = 10; SUT TAXA = Taxa TAXON = 6 NAME = color INTEGER = 10; SUT TAXA = Taxa TAXON = 7 NAME = color INTEGER = 10; SUT TAXA = Taxa TAXON = 8 NAME = color INTEGER = 10; SUT TAXA = Taxa TAXON = 9 NAME = color INTEGER = 10; SUT TAXA = Taxa TAXON = 10 NAME = color INTEGER = 10; SUT TAXA = Taxa TAXON = 11 NAME = color INTEGER = 10; SUT TAXA = Taxa TAXON = 12 NAME = color INTEGER = 10; SUT TAXA = Taxa TAXON = 13 NAME = color INTEGER = 10; SUT TAXA = Taxa TAXON = 14 NAME = color INTEGER = 10; SUT TAXA = Taxa TAXON = 15 NAME = color INTEGER = 10; SUT TAXA = Taxa TAXON = 16 NAME = color INTEGER = 10; SUT TAXA = Taxa TAXON = 17 NAME = color INTEGER = 10; SUT TAXA = Taxa TAXON = 18 NAME = color INTEGER = 10; SUT TAXA = Taxa TAXON = 19 NAME = color INTEGER = 10; SUT TAXA = Taxa TAXON = 20 NAME = color INTEGER = 10; SUT TAXA = Taxa TAXON = 21 NAME = color INTEGER = 10; SUT TAXA = Taxa TAXON = 22 NAME = color INTEGER = 10; SUT TAXA = Taxa TAXON = 23 NAME = color INTEGER = 10; SUT TAXA = Taxa TAXON = 24 NAME = color INTEGER = 10; SUT TAXA = Taxa TAXON = 25 NAME = color INTEGER = 10; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 791; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 791; END; BEGIN TREES; Title OSCs_NJ_analysis; LINK Taxa = Taxa; TRANSLATE [0] 1 Panax_ginseng_PNY2, [1] 2 Artemisia_annua_BAS, [2] 3 Eleutherococcus_senticosus_BAS, [3] 4 Betula_platyphylla_BPY, [4] 5 Euphorbia_tirucalli_AS, [5] 6 Vaccaria_hispanica_BS, [6] 7 Lotus_japonicus_AMY2, [7] 8 Glycyrrhiza_glabra_GgbAS, [8] 9 Pisum_sativum_OSCPSY, [9] 10 Medicago_truncatula_bas1, [10] 11 Arabidopsis_thaliana_LUP1, [11] 12 Bruguiera_gymnorhiza_BgLUS, [12] 13 Panax_vietnamensis_DDS, [13] 14 Panax_ginseng_DDS, [14] 15 Betula_platyphylla_BPW, [15] 16 Lotus_japonicus_OSC3, [16] 17 Olea_europaea_OEW, [17] 18 Taraxacum_officinale_TRW, [18] 19 Crocus_speciosus_OSC1, [19] 20 Arabidopsis_thaliana_CAS1, [20] 21 Pisum_sativum_PSX, [21] 22 Glycyrrhiza_glabra_CAS1, [22] 23 Betula_platyphylla_BPX2, [23] 24 Panax_ginseng_PNX, [24] 25 Centella_asiatica_CCS; TREE Imported_tree_1 = ((((((((1:0.08682463,2:0.10380908)0.7600:0.00549014,3:0.09173818)0.7690:0.00168542,4:0.08288788)0.3530:0.00773936,5:0.10246889)0.5370:-0.00217111,(6:0.10941569,((7:0.03651146,8:0.03687786)0.9360:0.00914274,(9:0.02583972,10:0.02622684)1.0000:0.02514559)1.0000:0.04738909)0.9620:0.0220537)0.9980:0.0348588,11:0.21085918)0.6230:0.00314071,12:0.18954399)1.0000:0.07049428,(13:0.01089246,14:0.01070082)1.0000:0.31014386,(((15:0.09382728,16:0.12299451)0.9980:0.04272042,(17:0.10742247,18:0.1227551)0.4950:0.00707748)1.0000:0.08034092,(19:0.13215281,(20:0.10710221,((21:0.0589369,22:0.05551391)1.0000:0.03376088,(23:0.08193484,(24:0.05121045,25:0.0587594)1.0000:0.04326821)0.5650:0.00235385)0.9620:0.01728561)0.8320:0.0103157)1.0000:0.15113123)0.9970:0.04137368); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1423296431610; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 27982078655664040; tell It; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8558610001468563879; mqVersion 302; checksumv 0 3 2945308719 null getNumChars 791 numChars 791 getNumTaxa 25 numTaxa 25 short false bits 2097151 states 2097151 sumSquaresStatesOnly 2.98435108692857E14 sumSquares 2.98435108692857E14 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 253; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1165 709; setLocation 603 26; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #27982078655664040 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #27982078655664040; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; getTable; tell It; rowNamesWidth 216; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 912 637; setLocation 603 26; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #27982078655664040 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 4199.1423296365513.5965318816797973224; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 912 637; setLocation 603 26; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8558610001468563879 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 912 637; setLocation 603 26; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;