#NEXUS
[written Sun Feb 08 14:32:17 KST 2015 by Mesquite  version 3.02 (build 681) at Hwansu-PC/192.168.0.11]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=22;
	TAXLABELS
		Panax_ginseng_CYP716A52v2 'Eleutherococcus senticosus CYP-18' Catharanthus_roseus_CYP716AL1 Medicago_truncatula_CYP716A12 Vitis_vinifera_CYP716A15 Vitis_vinifera_CYP716A17 Panax_ginseng_CYP716A53v2 Panax_ginseng_CYP716A47 'Eleutherococcus senticosus CYP-17' Glycyrrhiza_uralensis_CYP88D6 Avena_strigosa_CYP51H10 Arabidopsis_thaliana_CYP71A16 Arabidopsis_thaliana_CYP705A1 Arabidopsis_thaliana_CYP705A5 Glycine_max_CYP93E1 Medicago_truncatula_CYP93E2 Glycyrrhiza_uralensis_CYP93E3 'Eleutherococcus senticosus CYP-03' Medicago_truncatula_CYP72A61v2 Medicago_truncatula_CYP72A68v2 Medicago_truncatula_CYP72A63 Glycyrrhiza_uralensis_CYP72A154 
	;

END;


BEGIN CHARACTERS;
	TITLE  CYPs_amino_acid_sequence;
	DIMENSIONS  NCHAR=585;
	FORMAT DATATYPE = Protein GAP = - MISSING = ?;
	MATRIX
	Panax_ginseng_CYP716A52v2          ----------------MEL-FYVPLLSL-FVLFISLSFHFLFYKSKPSSSGGFPLPPGKTG-WPIIGESYEFLSTGWKGYPEKFIFDRMTKYSSN------VFKTSIFGEPAAVFCGAACNKFLFSNENKLVQAWWPDSVNKVFPSSTQTS--------SKEEAIKMRKMLPNFFKPEALQRYIGLMDQIAANHFESGWEN------KNEVVVFPLAKSYTFWIACKVFVSVEEP--AQVAELLEPFSAIASGIISVPIDLP---GTPFN-------------SAIKSSKIVRRKLVGIIKQRKIDLGEG------KASAT-QDILSHMLLTSDESGKF-----MGEGDIADKILGLLIGGHDTASSACTFVVKFLAELPQIYEGVYQEQMEIVKSKKAG-ELLKWEDIQKMKYSWNVACEVLRLAPPLQGA-FREALSDFTYNG-----FSIPKGWKLYWSANSTHINSEVFP-EPLKFDPSRFDGA----------GPPPFSFVPFGGGPRMCPGKEYARLEILVFMHHLVKRFKWEK-------VIPDEK----IVVNPMPIPANGLPVRLFPHKA------
	'Eleutherococcus senticosus CYP-18' ----------------MQL-FYVPLLSL-FVLLVSLSFYFLFYKSKSGSPGALPLPPGKTG-WPVIGESFEFLSTGWKGHPEKFIFDRLAKYSSN------VFRTSLLGQPAAVFCGAACNKFLFSNENKLVQAWWPDSVNKVFPSSTQTS--------SKEEAIKMRKLLPNFLKPEALQRYVGIMDQIAKKHFESGWEN------KKEVSVFPLAKNYTFWIACKVFLSVEEP--TQVAKLLEPFNAIASGIISVPIDLP---GTPFN-------------SAIKSSKIIRDKLLGIIKQRKIDLGEG------KASPT-QDILSHMLLTSDENGKF-----MTEGDIADKILGLLIGGHDTASSACTFVVKFLAELPEIYEGVYKEQMEIAKSKKPG-ELLSWEDIQKMKYSWNVACEVLRLAPPLQGA-FREVLTDFSYNG-----FSIPKGWKLYWSANSTHRNSEVFP-EPLKFDPSRFEGA----------GPPPYSFVPFGGGPRMCPGKEYARLEILVFMYHVVKRFKWEK-------VIPDEK----IVVNPMPIPASGLPVRLFPHKA------
	Catharanthus_roseus_CYP716AL1      ----------------MEI-FYVTLLSL-FVLLVSLSFHFLFYKNKSTLPG--PLPPGRTG-WPMVGESLQFLSAGWKGHPEKFIFDRMAKYSSN------VFRSHLLGEPAAVFCGAIGNKFLFSNENKLVQAWWPDSVNKVFPSSNQTS--------SKEEAIKMRKMLPNFLKPEALQRYIGLMDQIAQKHFSSGWEN------REQVEVFPLAKNYTFWLASRLFVSVEDP--IEVAKLLEPFNVLASGLISVPIDLP---GTPFN-------------RAIKASNQVRKMLISIIKQRKIDLAEG------KASPT-QDILSHMLLTSDENGKF-----MHELDIADKILGLLIGGHDTASSACTFIVKFLGELPEIYEGVYKEQMEIANSKAPG-EFLNWEDIQKMKYSWNVACEVLRLAPPLQGA-FREALNDFMFHG-----FSIPKGWKIYWSVNSTHRNPECFP-DPLKFDPSRFDGS----------GPAPYTFVPFGGGPRMCPGKEYARLEILVFMHNLVKRFKWEK-------IIPNEK----IVVDPMPIPEKGLPVRLYPHINA-----
	Medicago_truncatula_CYP716A12      ----------------MEPNFYLSLLLL-FVSFISLSLFFIFYKQKSPLN----LPPGKMG-YPIIGESLEFLSTGWKGHPEKFIFDRMRKYSSE------LFKTSIVGESTVVCCGAASNKFLFSNENKLVTAWWPDSVNKIFPTTSLDSN-------LKEESIKMRKLLPQFFKPEALQRYVGVMDVIAQRHFVTHWDN------KNEITVYPLAKRYTFLLACRLFMSVEDE--NHVAKFSDPFQLIAAGIISLPIDLP---GTPFN-------------KAIKASNFIRKELIKIIKQRRIDLAEG------TASPT-QDILSHMLLTSDENGKS-----MNELNIADKILGLLIGGHDTASVACTFLVKYLGELPHIYDKVYQEQMEIAKSKPAG-ELLNWDDLKKMKYSWNVACEVMRLSPPLQGG-FREAITDFMFNG-----FSIPKGWKLYWSANSTHKNAECFP-MPEKFDPTRFEGN----------GPAPYTFVPFGGGPRMCPGKEYARLEILVFMHNLVKRFKWEK-------VIPDEK----IIVDPFPIPAKDLPIRLYPHKA------
	Vitis_vinifera_CYP716A15           ----------------MEV-FFLSLLLI-FVLSVSIGLHLLFYKHRSHFTGP-NLPPGKIG-WPMVGESLEFLSTGWKGHPEKFIFDRISKYSSE------VFKTSLLGEPAAVFAGAAGNKFLFSNENKLVHAWWPSSVDKVFPSSTQTS--------SKEEAKKMRKLLPQFFKPEALQRYIGIMDHIAQRHFADSWDN------RDEVIVFPLAKRFTFWLACRLFMSIEDP--AHVAKFEKPFHVLASGLITVPIDLP---GTPFH-------------RAIKASNFIRKELRAIIKQRKIDLAEG------KASQ?-QDILSHMLLATDEDGCH-----MNEM?IADKILGLLIGGHDTASAAITFLIKYMAELPHIYEKVYEEQMEIANSKAPG-E--NWDDVQ?MRYSWNVACEVMRLAPPLQGAFFREAITDFVFNG-----FSIPKGWKLYWSANSTHKSPECFP-QPENFDPTRFEG{D N}----------GPAPYTFVPFGGGPRMCPGKEYARLEILVFMHNVVKRFKWDK-------LLPDEK----IIVDPMPMPAKGLPVRLHPRKP------
	Vitis_vinifera_CYP716A17           ----------------MEV-FFLSLLLI-FVLSVSIGLHLLFYKHRSHFTGP-NLPPGKIG-WPMVGESLEFLSTGWKGHPEKFIFDRISKYSSE------VFKTSLLGEPAAVFAGAAGNKFLFSNENKLVHAWWPSSVDKVFPSSTQTS--------SKEEAKKMRKLLPQFFKPEALQRYIGIMDHIAQRHFADSWDN------RDEVIVFPLAKRFTFWLACRLFMSIEDP--AHVAKFEKPFHVLASGLITVPIDLP---GTPFH-------------RAIKASNFIRKELRAIIKQRKIDLAEG------KASQN-QDILSHMLLATDEDGCH-----MNEMEIADKILGLLIGGHDTASAAITFLIKYMAELPHIYEKVYEEQMEIANSKAPG-ELLNWDDVQKMRYSWNVACEVMRLAPPLQGA-FREAITDFVFNG-----FSIPKGWKLYWSANSTHKSPECFP-QPENFDPTRFEGD----------GPAPYTFVPFGGGPRMCPGKEYARLEILVFMHNVVKRFKWDK-------LLPDEK----IIVDPMPMPAKGLPVRLHPRKP------
	Panax_ginseng_CYP716A53v2          ----------------MDLFISSQLLLL-LVFCL-----FLFWNFKPSSQNK--LPPGKTG-WPIIGETLEFISCGQKGNPEKFVTQRMNKYSPD------VFTTSLAGEKMVVFCGASGNKFIFSNENKLVVSWWPPAISKILTATIPSV----------EKSKALRSLIVEFLKPEALHKFISVMDRTTRQHFEDKWNG------STEVKAFAMSESLTFELACWLLFSINDP--VQVQKLSHLFEKVKAGLLSLPLNFP---GTAFN-------------RGIKAANLIRKELSVVIKQRRSD----------KLQTR-KDLLSHVMLSNGEGEKF-----FSEMDIADVVLNLLIASHDTTSSAMGSVVYFLADHPHIYAKVLTEQMEIAKSKGAE-ELLSWEDIKRMKYSRNVINEAMRLVPPSQGG-FKVVTSKFSYAN-----FIIPKGWKIFWSVYSTHKDPKYFK-NPEEFDPSRFEGD----------GPMPFTFIPFGGGPRMCPGSEFARLEVLIFMHHLVTNFKWEK-------VFPNEK----IIYTPFPFPENGLPIRLSPCTL------
	Panax_ginseng_CYP716A47            ------------MAAAMVLFFSLSLLLLPLLLLFAYFSYTKRIPQKEN-DSKAPLPPGQTG-WPLIGETLNYLSCVKSGVSENFVKYRKEKYSPK------VFRTSLLGEPMAILCGPEGNKFLYSTEKKLVQVWFPSSVEKMFPRSHGES--------NADNFSKVRGKMMFLLKVDGMKKYVGLMDRVMKQFLETDWNR------QQQINVHNTVKKYTVTMSCRVFMSIDDE--EQVTRLGSSIQNIEAGLLAVPINIP---GTAMN-------------RAIKTVKLLTREVEAVIKQRKVDLLEN------KQASQPQDLLSHLLLTANQDGQF-----LSESDIASHLIGLMQGGYTTLNGTITFVLNYLAEFPDVYNQVLKEQVEIANSKHPK-ELLNWEDLRKMKYSWNVAQEVLRIIPPGVGT-FREAITDFTYAG-----YLIPKGWKMHLIPHDTHKNPTYFP-SPEKFDPTRFEGN----------GPAPYTFTPFGGGPRMCPGIEYARLVILIFMHNVVTNFRWEK-------LIPNEK----ILTDPIPRFAHGLPIHLHPHN-------
	'Eleutherococcus senticosus CYP-17' ----------------MVLFFSLSLLLL-FFLLFAYFSHQIFITKHRNTDSKIPLPPGPTG-WPLIGESLNYLSTVKSGLLENFVTYRKEKYSTK------VFRTSLFGESVAILCGAEGNKFLFSNERKLVRVWFPRSVEKIFAQSHAES--------NAESFYKIR-KMMFILKADALKKYVGLMDTIMKQFLQTHWNHH----LQTQINVHNTVMNYSLMLSCRVFMSIDDA--EQVRKIGNSIHHIEAGLFAVPINLP---GTAMN-------------RAIKTVKLLTKEFEAVVKQRKADLLEN------KQAPPTQDLLSHLLLTPNEDGRF-----MSESDIARQLLGLVQGAYSTLNVVIAFIINYLAELPDVYDQVLKEQVEIAKSKNPK-ELLNWEDLSKMKYSWNVVQEVLRIRSPAIGV-FREAINDFTYAG-----YLIPKGWKLHLIPVATHKNPTYFP-NPEKFDPTRFEGS----------GPAPYTFTPFGGGPRMCPGVEYARLAILIFMHHAVTNFRWEK-------LIPNEQ----IFTFPVLSFANGLPIHLHPHNP------
	Glycyrrhiza_uralensis_CYP88D6      ------------MEVHWVCMSAATLLVCYIFGSKFVRNLNGWYYDVKLRRKEHPLPPGDMG-WPLIGDLLSFIKDFSSGHPDSFINNLVLKYGRSG-----IYKTHLFGNPSIIVCEPQMCRRVLTDDVNFKLGYPKSIKELARCRPMIDVS-------NAEHRLFRRLITSPIVGHKALAMYLERLEEIVINSLEELSSMK------HPVELLKEMKKVSFKAIVHVFMGSSNQ--DIIKKIGSSFTDLYNGMFSIPINVP---GFTFH-------------KALEARKKLAKIVQPVVDERRLMIENG-----PQEGSQRKDLIDILLEVKDENGRK-----LEDEDISDLLIGLLFAGHESTATSLMWSITYLTQHPHILKKAKEEQEEITRTRFSSQKQLSLKEIKQMVYLSQVIDETLRCAN-IAFATFREATADVNING-----YIIPKGWRVLIWARAIHMDSEYYP-NPEEFNPSRWDDY----------NAKAGTFLPFGAGSRLCPGADLAKLEISIFLHYFLRNYRLER---------INPECHVTSLPVSKPTDNCLAKVIKVSCA*------
	Avena_strigosa_CYP51H10            ----------------MDMTICVVWLVLAIISIAAVVSKSSKRSNASDSVVTRPPPPVVTG-----IDLLKFLHALCRKDPEAAMMYLYNKLGSI-------FTLSFLWKRVTILIGHEASIPFFHGLESDVSQGNFNEFTVPMFGKENGYA------VEYATRIEQSRFFYDSLKASQLRSHVDLIRQEVEEYFAKWGDEG-------EVDLKQEFTKLLMLIAGRCLLGSEVR-DTIFGEFYTLFADIEEGVNLFSYMFPYMPVPVNN-------------RRDRAQMKLTSIVSEIVRSRKRCNRVED------------DMLQRLIDSRYKDGRP-----TTEGEVSGMIIGLIFAGKHTSTITASWTGACLLTHPKFLGAAVEEQKQMMSKYKDN---IDYNILSEMEILHSCIKEAGRMYP-AAPVLLRKTLKEISVQTREGGEYGIPKGTTLAHLVMLTGKVPHTYK-DPEVYDPDRFRVG-----REEDKIGGKLSYTIFGAGRHACAGESFAFMQIKIIWSHLLRNFDLKLTS------PFPKQDWSKFIIEPKGKVMVSYKRCRMPAN-------
	Arabidopsis_thaliana_CYP71A16      ----------------------MEMMILISLCLTTFLTILLFFKSLLK-RPNSNLPPSPWR-LPVIGNLHQLSLHPHRALS------SLSARHGP------LMLLRFGRVPVLIVSSADVAHDVMKTHDLKFANRPITKSAHKISNGGRDLVFAP---YGEYWRNVKSLCTIHLLSNKMVQSSEKRREEEITLLMETLEEAS---LSSSSVNLSKLITNMVSDIMGKVVLGKKYSGEEGTIDVKTITKSFLDAVGLSPVGEYIPSLAWIG------KITGSDGKLEKITKQFGDFIEKVLQEHEDTTADK-------ETPDFVDMLLTIQRDETAQCQL------DKSDLKVIIFEMFLGSTTTTSAVIEWAMTRLMRNPECLKKLQDEIRSVSKMN----SYVSGKEVENMNYLKAVIKEVLRLHPPLPLLVPRLLSEDVKLKG-----YDITAGTQVIINAWAIQRDTATWGSDAQEFRPERHFDS------TWDFVGRNFKYIPFGAGRRLCPGIGLGSVMASVTLANLVKRFDWRVED------GPSGYDKPDLVEGAGIDVCRKFPLVVFPSSA------
	Arabidopsis_thaliana_CYP705A1      --------------MDAIVVDSQNCFIIILLCSFSLISYFVFFKKPK---VNFDLLPSPPS-LPIIGHLHLLLSTLIHKS-----LQKLSSKYGP------LLHLRIFNIPFILVSSDSLAYEIFRDHDVNVSSRGVGAIDESLAFGSSGFIQA---PYGDYWKFMKKLIATKLLGPQPLVRSQDFRSEELERFYKRLFDKA--MKKE-SVMIHKEASRFVNNSLYKMCTGRSFS--VENNEVERIMELTADLGALSQKFFV---SKMFRKLLEKLGISLFKTEIMVVSRRFSELVERILIEYEEKMDG-------HQGTQFMDALLAAYRDE-NTEYK-----ITRSHIKSLLTEFFIGAADASSIAIQWAMADIINNREILEKLREEIDSVVGKT----RLVQETDLPNLPYLQAVVKEGLRLHP-PTPLVVREFQEGCEIGG-----FFVPKNTTLIVNSYAMMRDPDSWQ-DPDEFKPERFLAS--LSREE-DKKEKILNFLPFGSGRRMCPGSNLGYIFVGTAIGMMVQCFDWEINGDK---INMEEATGGFLITMAHPLTCTPIPLPRTQNSLISHL--
	Arabidopsis_thaliana_CYP705A5      -------------MASMITVDFENCFIFLLLCLFSRLSYDLFFRKTKDSRAGCALPPSPPS-LPIIGHLHLILFVPIHQS-----FKNISSKYGP------LLHLRFFNFPIVLVSSASTAYEIFKAQDVNVSSRPPPPIEESLILGSSSFINT---PYGDYSKFMKKFMVQKLLGPQALQRSRNIRADELERFYKTLLDKA--MKKQ-TVEIRNEAMKLTNNTICKMIMGRSCS--EENGEAETVRGLVTESIFLTKKHFL---GAMFHKPLKKLGISLFAKELMNVSNRFDELLEKILVEHEEKLQEH------HQTSDMLDMLLEAYGDE-NAEYK-----ITRDQIKSLFVDLFSAGTEASANTIQWTMAEIIKNPKICERLREEIDSVVGKT----RLVQETDLPNLPYLQAIVKEGLRLHP-PGP-VVRTFKETCEIKG-----FYIPEKTRLFVNVYAIMRDPDFWE-DPEEFKPERFLASSRLGEED-EKREDMLKYIPFGSGRRACPGSHLAYTVVGSVIGMMVQHFDWIIKGEK---INMKEG-GTMTLTMAHPLKCT--PVPRNLNT-------
	Glycine_max_CYP93E1                ------------------MLDIKGYLVLFFLWFISTILIRSIFKKPQ----RLRLPPGPPISIPLLGHAPYLR-SLLHQA-----LYKLSLRYGP------LIHVMIGSKHVVVASSAETAKQILKTSEEAFCNRPLMIASESLTYGAADYFFI---PYGTYWRFLKKLCMTELLSGKTLEHFVRIRESEVEAFLKRMMEIS--GNGNYEVVMRKELITHTNNIITRMIMGKKSN--AENDEVARLRKVVREVGELLGAFNL---GDVIG-FMRPLDLQGFGKKNMETHHKVDAMMEKVLREHEEARAKE--DADSDRKKDLFDILLNLIEAD-GADNK-----LTRESAKAFALDMFIAGTNGPASVLEWSLAELVRNPHVFKKAREEIESVVGKE----RLVKESDIPNLPYLQAVLKETLRLHP-PTPIFAREAMRTCQVEG-----YDIPENSTILISTWAIGRDPNYWD-DALEYKPERFLFSDDPGKSKIDVRGQYYQLLPFGSGRRSCPGASLALLVMQATLASLIQCFDWIVNDGKNHHVDMSEE-GRVTVFLAKPLKCKPVPRFTPFAA-------
	Medicago_truncatula_CYP93E2        ------------------MLEIQGYVVLFLLWFISSIFIRSLFKKSV----CYKLPPGPPISFPILGHAPYLR-SLLHKS-----LYKLSNRYGP------LMHIMLGSQHVVVASTAESAKQILKTCEESFTNRPIMIASENLTYGAADYFFI---PYGNYWRFLKKLCMTELLSGKTLEHFVHIREDEIKCFMGTLLEIS--KNGK-PIEMRHELIRHTNNIISRMTMGKKSS--GMNDEVGQLRKVVREIGELLGAFNL---GDIIG-FMRPLDLQGFGKRNKDTHHKMDVMMEKVLKEHEEARAKE--GAGSDRKKDLFDILLNLIEADDGAESK-----LTRQSAKAFALDMFIAGTNGPASVLEWALAELIRNPHVFKKAREEIDSTVGKE----RLFKESDIPNLPYLQAVVKETLRMHP-PTPIFAREATRSCQVDG-----YDVPAFSKIFINAWAIGRDPNYWD-NPLVFNPERFLQSDDPSKSKIDVRGQYYQLLPFGSGRRSCPGSSLALLVIQATLASLIQCFDWVVNDGKSHDIDMSEV-GRVTVFLAKPLKCKPVPHFVPFSSA------
	Glycyrrhiza_uralensis_CYP93E3      ------------------MLDIQGYLVLFLLWFISTILIRSIFKKSQ----CYKLPPGPPISLPLIGHAPYLR-SLLHQA-----LYKLSTRYGP------LMHVLIGSQHVIVASSAEMAKQILKTYEESFCNRPIMIASENLTYGAADYFFI---PYGTYWRFLKKLCMTELLSGKTLEHFVNIREDEIQCFLRNVLEIS--KTGK-GVEMRQELIRHTNNIISRMTMGKKSN--GTNDEVGQVRKLVREIGELLGAFNL---GDIIG-FMRPFDLQGFGKKNRDAHHNMDVMMEKVLKEHEEARAKEKGGAESDRKKDLFDILLNLIEAD-GADNK-----LTRESAKAFALDMFIAGTNGPASVLEWSLAELIRNPQVFKKAREEIDSVVGKE----RLVKESDIPNLPYLQAVVKETLRMHP-PTPIFAREAIRGCQVDG-----YDIPANSKIFINAWAIGRDPKYWD-NPQVYSPERFLITDEPGKSKIDVRGQYYQLLPFGSGRRSCPGSSLALLVIQATLASLVQCFDWVVNDGKNSEIDMSEE-GRVTVFLAKPLKCKPVPRFVPFSA-------
	'Eleutherococcus senticosus CYP-03' ----TTIMDGVVVYSSIVLGVGIVVG-----VWWFLNWVWVRPKKMEKLLRKQGFKGNPYRVW--YGDLRQ--QTSMVEEAMSKPIN-ISDDIVPRVIPFVSHHVDCYGKKSFIWNGPTANVVIVDPEMVKEVFTKNFVFQKPTANPLFRMFLIGLPSIEGEKWAKHRRLLKPAFLMERLKDMLPAFDLCCCKMTTKWQQKMLEGN-SCELDVMPYLQTLTSDVISHTAFGSSYE--EGSRVFELQIEQLQLAIETLQSVYIPGSR---------------------IDKEVRLSLKRIIDKKLEVMKTT-----GKGSNDLLGILLESNLNEVQ-HGN-GSMGMSTQDVIDECKLFYFAGQETTSVSLAWTLLLLSLHPNWQDKARKEVLHVIGKRKP-----EFADLSQLKIVTMILYEVLRLYP-PVTLVNRIIHEETKLGD-----VTLPPGVLFTLPIQLIHHDREIWGDDVKIFNPERFSEG------VSKATKNRTVFLPFGGGPRICIGQNFALLEIKFAIAMMLAQFSFELS--------PSYTHAPACLGSLRPQHGVNLIIHKL----------
	Medicago_truncatula_CYP72A61v2     MENLGTLLSSLNLQPTKVAIITVISSVLIWWIWSALDWIWFTPKRIEKRLKQQGLKGNSYRLM--VGDIRD--MVKMIKEAKSKPMDPYSNDIAPRVLPFVVHTIAKYGKSSFMWLGPRPRVFIMEPDKIKEMTTKVYDFQKPDTSPLFKLLASGFANYDGDKWAKHRKIVSPAFNVEKMKMLIPIFCHSCDDMVNKLDKVVSSSNGPCELDIWPFVQNVSSDVLARAGFGSSFE--EGKRVFQLQKEMISLTMTLFKFAFIPGYRF---------LPTYTNRRMKAIDLEIRTSLMKIINRRLKAIKAG-----EPTNNDLLGILLESNYKESE-KGN-GGGGMSLRDVVDEVKLFYLAGQEANAELLVWTLLLLAKNPEWQAKAREESFQVFGNENP-----DYEKIGQLKIVSMILQESLRLYP-PVIMLSRFLRKDTKLGD-----LTLPAGVELIVPVSMMHQEKEFWGDDAGDFKPERFSEG------VSKATNGKVSYLPFGWGPRLCIGQNFGLLEAKIAVSMILRQFSLEFS--------PSYTHAPSFIITLQPEHGAHLILHKL----------
	Medicago_truncatula_CYP72A68v2     -------MELSWETKSAIILITVTFG--LVYAWRVLNWMWLKPKKMEKLLREQGLQGNPYRLL--LGDAKD--YFVMQKKVQSKPMNLSD-DIAPRVAPYIHHAVQTHGKKSFIWFGTKPWVILNEPEQIREVFNKISEFPKVQYK-FMKLITRGLVKLEGEKWSKHRRIINPAFHMEKLKIMTPTFLKSCNDLISNWEETL-SSNGSSEIDIWPSLQSLTSDVIARSSFGSSYE--EGRKVFQLQIEQGELIMKNLMKSLIPLWRF---------LPTADHRKINENDKQIETTIKNIINKREKAIKAG-----EATENDLLGLLLESNHREIKEHGNFKNMGLSLEEVVGECMLFHIAGQETTSDLLVWTMVLLSRYPDWQERARKEVLEIFGNEKP-----DFDGLNKLKIMGMILYEVLRLYP-PITGVSRKVENDIKLGD-----LTLYAGMDVYLPIVLIHHDCELWGDDAKIFNPERFSGG------ISKATNGRFSYFPFGAGPRICIGQTFSLLEAKMAMALILQKFSFELS--------QTYAHAPSVVLTVQPQHGAHVILRKIKT--------
	Medicago_truncatula_CYP72A63       -------MEVFMFPTGTTVIISVLSVLLAVIPWYLLNKLWLKPKRFEKLLKAQGFQGEPYNLSVLKDKSKQNYMLKLQQEDKSKSIGLSK-EAAPSIFTPVHQTVRKYGNNSFLWEGTTPRVIITDPDQIKDVFNKIDDFPKPKLRSIAKYLSVGILDHEGKKWAKHRKIANPAFHLEKLKVMLPAFSHSCNEMISKWKELL-SSDGTCEIDVWPSLQNFTCDVISRTAFGSSYA--EGTKLFQLLKKQGFLLMT-GRHTNNPLWGL---------LATTTKTKMKEIDREIHDSLEGIIEKREKALKNG-----ETTNDDLLGILLQSNHAEKQGQGNSKNIGMTTQDVIDECKLFYLAGQETTSSLLVWTMVLLGRYPEWQARAREEVLQVFGNQNP-----NNEGLSQLKIVTMILYEVLRLFP-PLIYFNRALRKDLKLGN-----LLLPEGTQISLPILLIHQDHDLWGDDAKEFKPERFAEG------IAKATKGQVSYFPFGWGPRICLGQNFALLEAKIAVSLLLQNFSFELS--------PNYVHVPTTVLTLQPKNGASIILHKL----------
	Glycyrrhiza_uralensis_CYP72A154    -------MDASSTPGAIWVVLTVILAAIPIWVCHMVNTLWLRPKRLERHLRAQGLHGDPYKLS--LDNSKQTYMLKLQQEAQSKSIGLSKDDAAPRIFSLAHQTVHKYGKNSFAWEGTAPKVIITDPEQIKEVFNKIQDFPKPKLNPIAKYISIGLVQYEGDKWAKHRKIINPAFHLEKLKGMLPAFSHSCHEMISKWKGLL-SSDGTCEVDVWPFLQNLTCDVISRTAFGSSYA--EGAKIFELLKRQGYALMT-ARYARIPLWWL---------LPSTTKRRMKEIERGIRDSLEGIIRKREKALKSG-----KSTDDDLLGILLQSNHIENKGDENSKSAGMTTQEVMEECKLFYLAGQETTAALLAWTMVLLGKHPEWQARARQEVLQVFGNQNP-----NFEGLGRLKIVTMILYEVLRLYP-PGIYLTRALRKDLKLGN-----LLLPAGVQVSVPILLIHHDEGIWGNDAKEFNPERFAEG------IAKATKGQVCYFPFGWGPRICVGQNFALLEAKIVLSLLLQNFSFELS--------PTYAHVPTTVLTLQPKHGAPIILHKL----------

;


END;

BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1 -  585;

END;

BEGIN NOTES;

	TAXABITS   TAXA = Taxa NAME = newlyAddedTaxon on =  1 -  22;

END;

BEGIN CODONS;
	CODESET * UNTITLED   =  universal:  1 -  585;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Mk1 (est.)':  1 -  585;
END;

BEGIN TREES;
	Title CYPs_NJ_Analysis;
	LINK Taxa = Taxa;
	TRANSLATE
[0] 		1 Panax_ginseng_CYP716A52v2,
[1] 		2 'Eleutherococcus senticosus CYP-18',
[2] 		3 Catharanthus_roseus_CYP716AL1,
[3] 		4 Medicago_truncatula_CYP716A12,
[4] 		5 Vitis_vinifera_CYP716A15,
[5] 		6 Vitis_vinifera_CYP716A17,
[6] 		7 Panax_ginseng_CYP716A53v2,
[7] 		8 Panax_ginseng_CYP716A47,
[8] 		9 'Eleutherococcus senticosus CYP-17',
[9] 		10 Glycyrrhiza_uralensis_CYP88D6,
[10] 		11 Avena_strigosa_CYP51H10,
[11] 		12 Arabidopsis_thaliana_CYP71A16,
[12] 		13 Arabidopsis_thaliana_CYP705A1,
[13] 		14 Arabidopsis_thaliana_CYP705A5,
[14] 		15 Glycine_max_CYP93E1,
[15] 		16 Medicago_truncatula_CYP93E2,
[16] 		17 Glycyrrhiza_uralensis_CYP93E3,
[17] 		18 'Eleutherococcus senticosus CYP-03',
[18] 		19 Medicago_truncatula_CYP72A61v2,
[19] 		20 Medicago_truncatula_CYP72A68v2,
[20] 		21 Medicago_truncatula_CYP72A63,
[21] 		22 Glycyrrhiza_uralensis_CYP72A154;
	TREE Imported_tree_1 = ((((((((1:0.06284307,2:0.04364041)1.0000:0.05245951,3:0.08734047)1.0000:0.03408172,(4:0.10811121,(5:0.0,6:0.0)1.0000:0.12073036)0.8380:0.03688995)1.0000:0.1594576,7:0.31797229)0.9290:0.01400709,(8:0.14409911,9:0.13353262)1.0000:0.23060736)1.0000:0.34433481,10:0.62933627)0.9770:0.14103873,11:0.83237201)0.7860:0.05932074,(12:0.60999289,((13:0.2545153,14:0.18563537)1.0000:0.26510053,(15:0.0971628,(16:0.06605727,17:0.05742378)0.9260:0.03271907)1.0000:0.36426473)0.7880:0.06737036)1.0000:0.29420494,(18:0.30683725,(19:0.3413606,(20:0.28792244,(21:0.11285155,22:0.11282045)1.0000:0.15350795)0.4600:0.01020803)0.7520:0.0414043)1.0000:0.56038522);

END;


Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		timeSaved 1423373537860;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			setID 0 921255520787306584;
		endTell;
		getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
		tell It;
			setID 0 5126174351210654157;
			mqVersion 302;
			checksumv 0 3 356456759 null  getNumChars 585 numChars 585 getNumTaxa 22 numTaxa 22   short false   bits 2305843009215791103   states 2097151   sumSquaresStatesOnly 1.08920919566288E14 sumSquares 1.08920919566288E14 longCompressibleToShort false usingShortMatrix false   NumFiles 1 NumMatrices 1;
			mqVersion;
		endTell;
		getWindow;
		tell It;
			suppress;
			setResourcesState false false 271;
			setPopoutState 400;
			setExplanationSize 0;
			setAnnotationSize 0;
			setFontIncAnnot 0;
			setFontIncExp 0;
			setSize 994 697;
			setLocation 354 136;
			setFont SanSerif;
			setFontSize 10;
			getToolPalette;
			tell It;
			endTell;
			desuppress;
		endTell;
		getEmployee  #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			showTaxa #921255520787306584 #mesquite.lists.TaxonList.TaxonList;
			tell It;
				setTaxa #921255520787306584;
				getWindow;
				tell It;
					newAssistant  #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					setSize 723 625;
					setLocation 354 136;
					setFont SanSerif;
					setFontSize 10;
					getToolPalette;
					tell It;
					endTell;
					setActive;
				endTell;
				showWindow;
				getEmployee #mesquite.lists.ColorTaxon.ColorTaxon;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel;
				tell It;
					togglePanel off;
				endTell;
			endTell;
		endTell;
		getEmployee  #mesquite.trees.ManageTrees.ManageTrees;
		tell It;
			getTreeBlock 0;
			tell It;
				setSelected  1;
				attachments ;
			endTell;
		endTell;
		getEmployee  #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord;
		tell It;
			makeTreeWindow #921255520787306584  #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker;
			tell It;
				suppressEPCResponse;
				setTreeSource  #mesquite.trees.StoredTrees.StoredTrees;
				tell It;
					setTreeBlock 1;
					toggleUseWeights off;
				endTell;
				setAssignedID 1012.1423373448772.4074689479776673432;
				getTreeWindow;
				tell It;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					setSize 723 625;
					setLocation 354 136;
					setFont SanSerif;
					setFontSize 10;
					getToolPalette;
					tell It;
					endTell;
					getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator;
				tell It;
					suppress;
					setTreeDrawer  #mesquite.trees.SquareLineTree.SquareLineTree;
					tell It;
						setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard;
						tell It;
							branchLengthsToggle off;
							toggleScale on;
							toggleBroadScale off;
							toggleCenter on;
							toggleEven on;
							setFixedTaxonDistance 0;
						endTell;
						setEdgeWidth 4;
						showEdgeLines on;
						orientUp;
					endTell;
					setBackground White;
					setBranchColor Black;
					showNodeNumbers off;
					showBranchColors on;
					labelBranchLengths off;
					centerBrLenLabels on;
					showBrLensUnspecified on;
					showBrLenLabelsOnTerminals on;
					setBrLenLabelColor 0 0 255;
					setNumBrLenDecimals 6;
					desuppress;
					getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames;
					tell It;
						setColor Black;
						toggleColorPartition off;
						toggleColorAssigned on;
						toggleShadePartition off;
						toggleShowFootnotes on;
						toggleNodeLabels on;
						toggleCenterNodeNames off;
						toggleShowNames on;
						namesAngle ?;
					endTell;
				endTell;
					setTreeNumber 1;
					setDrawingSizeMode 0;
					toggleLegendFloat on;
					scale 0;
					toggleTextOnTree off;
					showWindow;
				endTell;
				desuppressEPCResponse;
				getEmployee #mesquite.trees.ColorBranches.ColorBranches;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.ornamental.BranchNotes.BranchNotes;
				tell It;
					setAlwaysOn off;
				endTell;
				getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition;
				tell It;
					colorByPartition off;
				endTell;
				getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles;
				tell It;
					setOn on;
					setDigits 4;
					writeAsPercentage off;
					toggleCentred off;
					toggleHorizontal on;
					toggleWhiteEdges on;
					setFontSize 10;
					setOffset 0  0;
				endTell;
				getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings;
				tell It;
					setOn on;
					toggleCentred on;
					toggleHorizontal on;
					setFontSize 10;
					setOffset 0  0;
				endTell;
				getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues;
				tell It;
					panelOpen false;
				endTell;
			endTell;
		endTell;
		getEmployee  #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord;
		tell It;
			showDataWindow #5126174351210654157 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker;
			tell It;
				getWindow;
				tell It;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					setSize 723 625;
					setLocation 354 136;
					setFont SanSerif;
					setFontSize 10;
					getToolPalette;
					tell It;
					endTell;
					setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow;
					colorCells  #mesquite.charMatrices.ColorByState.ColorByState;
				tell It;
					setStateLimit 9;
					toggleUniformMaximum on;
				endTell;
					colorRowNames  #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor;
					colorColumnNames  #mesquite.charMatrices.CharGroupColor.CharGroupColor;
					colorText  #mesquite.charMatrices.NoColor.NoColor;
					setBackground White;
					toggleShowNames on;
					toggleShowTaxonNames on;
					toggleTight off;
					toggleThinRows off;
					toggleShowChanges off;
					toggleSeparateLines off;
					toggleShowStates on;
					toggleAutoWCharNames off;
					toggleAutoTaxonNames off;
					toggleShowDefaultCharNames off;
					toggleConstrainCW on;
					toggleBirdsEye off;
					toggleShowPaleGrid off;
					toggleShowPaleCellColors off;
					toggleShowPaleExcluded off;
					togglePaleInapplicable on;
					toggleShowBoldCellText off;
					toggleAllowAutosize off;
					toggleColorsPanel off;
					toggleLinkedScrolling on;
					toggleScrollLinkedTables off;
				endTell;
				showWindow;
				getWindow;
				tell It;
					forceAutosize;
				endTell;
				getEmployee #mesquite.charMatrices.ColorCells.ColorCells;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel;
				tell It;
					togglePanel off;
				endTell;
				getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector;
				tell It;
					autotabOff;
				endTell;
				getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.align.AlignToDropped.AlignToDropped;
				tell It;
					gapCosts 8 3 2 2;
					subCosts  5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5;
				endTell;
				getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor;
				tell It;
					panelOpen false;
				endTell;
			endTell;
		endTell;
		endTell;
end;