#NEXUS [written Sun Feb 08 14:44:40 KST 2015 by Mesquite version 3.02 (build 681) at Hwansu-PC/192.168.0.11] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=16; TAXLABELS Barbarea_vulgaris_UGT73C10 Barbarea_vulgaris_UGT73C11 Barbarea_vulgaris_UGT73C12 Barbarea_vulgaris_UGT73C13 'Eleutherococcus senticosus UGT-3' Glycine_max_UGT73P2 Medicago_truncatula_UGT73K1 Medicago_truncatula_UGT73F3 Glycine_max_UGT73F2 Glycine_max_UGT73F4 Glycine_max_UGT91H4 Vaccaria_hispanica_UGT74M1 Medicago_truncatula_UGT71G1 'Eleutherococcus senticosus UGT-10' Arabidopsis_thaliana_UGT85A4 'Eleutherococcus senticosus UGT-11' ; END; BEGIN CHARACTERS; TITLE UGTs_amino_acid_sequences; DIMENSIONS NCHAR=541; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX Barbarea_vulgaris_UGT73C10 ---MVSEITHKSYPLHFVLFPFMAQGHMIPMVDIARLLAQRGVKITIVTTPHNAARFENVLSRAIESGLPISIVQVKLPSQEAGLPEGNETFDSLVSTKLLVPFFKAVNMLEEPVQKLFEEMSPQPSCIISDFCLPYTSKIAKKFNIPKILFHGMCCFCLLCMHVLRKN---REILENLK----------SDKEHFVVPYFPDRVEFTRPQVPLATYVPG--EWHEIKEDMVEAD---KTSYGVIVNTYQELE-PAYANGY--KEARSGKAWTIGPVSLCNKVGADK---AERG-NKADIDQDECLKWLDSKEEGSVLYVCLGSICS-LPLSQLKELGLGLEESQRPFIWVVRGWEKN-------KELLEWFSESGFEERVKD--RGLLIKGWSPQMLILAHHSVGGFLTHCGWNSTLEGITSGVPLLTWPLFGDQFCNQKLVVQVLKVGVSAGVEEVTNWGEEEKIGVLVDKEGVKKAVEELMGESDDAKEIRKRVKELGQLAHKAVEEGGSSHSNITSLLEDIMQLAQPNN-------- Barbarea_vulgaris_UGT73C11 ---MVSEITHKSYPLHFVLFPFMAQGHMIPMVDIARLLAQRGVKITIVTTPHNAARFENVLSRAIESGLPISIVQVKLPSQEAGLPEGNETFDSLVSMELLVPFFKAVNMLEEPVQKLFEEMSPQPSCIISDFCLPYTSKIAKKFNIPKILFHGMCCFCLLCMHVLRKN---REILENLK----------SDKEHFVVPYFPDRVEFTRPQVPMATYVPG--EWHEIKEDIVEAD---KTSYGVIVNTYQELE-PAYANDY--KEARSGKAWTIGPVSLCNKVGADK---AERG-NKADIDQDECLKWLDSKEEGSVLYVCLGSICS-LPLSQLKELGLGLEESQRPFIWVVRGWEKN-------KELLEWFSESGFEERVKD--RGLLIKGWSPQMLILAHHSVGGFLTHCGWNSTLEGITSGIPLLTWPLFGDQFCNQKLVVQVLKVGVSAGVEEVTNWGEEEKIGVLVDKEGVKKAVEELMGESDDAKERRKRVKELGQLAQKAVEEGGSSHSNITSLLEDIMQLAQSNN-------- Barbarea_vulgaris_UGT73C12 ---MVSEITHKSYPLHFVLFPFMAQGHMIPMVDIARLLAQRGVKITIVTTPHNAARFKNVLSRAIESGLPISIVQVKLPSQEAGLPEGNETLDSLVSMELMIHFLKAVNMLEEPVQKLFEEMSPQPSCIISDFCLPYTSKIAKKFNIPKILFHGMCCFCLLCMHILRKN---REIVENLK----------SDKEHFVVPYFPDRVEFTRPQVPVATYVPG--DWHEITEDMVEAD---KTSYGVIVNTYQELE-PAYANDY--KEARSGKAWTIGPVSLCNKVGADK---AERG-NKADIDQDECLKWLNSKEEGSVLYVCLGSICN-LPLSQLKELGLGLEESQRPFIWVIRGWEKN-------KELHEWFSESGFEERIKD--RGLLIKGWAPQMLILSHHSVGGFLTHCGWNSTLEGLTAGLPLLTWPLFADQFCNEKLAVQVLKAGVSAGVDQPMKWGEEEKIGVLVDKEGVKKAVEELMGESDDAKEIRRRAKELGELAHKAVEEGGSSHSNITSLLEDIMQLAQSNN-------- Barbarea_vulgaris_UGT73C13 ---MVSEITHKSYPLHFVLFPFMAQGHMIPMVDIARLLAQRGVKITIVTTPHNAARFENVLNRAIESGLPISIVQVKLPSQEAGLPEGNETFDSLVSMELLVPFFKSVNMLEEPVQKLFEEMSPQPSCIISDFCLPYTSKIAKKFNIPKILFHGMCCFCLLCMHVLRKN---HEIVENLK----------SDKEHFVVPYFPDRVEFTRPQVPVATYVPG--DWHEITGDMVEAD---KTSYGVIVNTCQELE-PAYANDY--KEARSGKAWTIGPVSLCNKVGADK---AERG-NKADIDQDECLKWLNSKEEGSVLYVCLGSICN-LPLSQLKELGLGLEESQRPFIWVIRGWEKN-------KELLEWFSESGFEERIKD--RGLLIKGWAPQMLILSHHSVGGFLTHCGWNSTLEGLTAGLPLLTWPLFADQFCNEKLAVQVLKAGVSAGVDQPMKWGEEEKIGVLVDKEGVKKAVEELMGESDDAKEIRRRAKELGELAHKAVEEGGSSHSNITSLLEDIMQLAQSNN-------- 'Eleutherococcus senticosus UGT-3' ---------------------------------------------------------------------PRSLFLPKRPD----CPKDAKAWRLYLHTTWRKIFFVGCKMLQEPIQKLLAELQPRPSCIISTNSLPWTAKVASNLGIPRYAFQTIACFSLLMSHNVGR----MTVVQTAS----------SDTEPFVVQGMPDKIVITKSQIPQIVTKAREEDMKGIIGEMIEAE---RLTRGMVVNSFEEME-PKYVEAF--KNMGN-KIWCIGPVSLCNNEMSDK---LERGGNKASIDQNLCLKWLDSMESNSVIYACFGSMGR-IPSAQIIETGLGLEASSRPFIWIIRKRDLS-------AKVEKWLEDEKFEERVKG--RGLIIRGWAPQVLILSHPTVGGFITHCGWNSTLEAVCAGVPMITWPMFAEQFYNEKLVVNVLKIGVRVGVEVAMKTEEDEDK-VYVSREQVKEAIEQLMDE-EEKGERIKRAKELSEMAKKATA-------------------------------- Glycine_max_UGT73P2 -----ME--KKKGELKSIFLPFLSTSHIIPLVDMARLFALHDVDVTIITTAHNATVFQKSIDLDASRGRPIRTHVVNFPAAQVGLPVGIEAFNVDTPREMTPRIYMGLSLLQQVFEKLFHDLQ--PDFIVTDMFHPWSVDAAAKLGIPRIMFHGASYLARSAAHSVEQYAP---HLEAK-----------FDTDKFVLPGLPDNLEMTRLQLPDWLRSPN--QYTELMRTIKQSE---KKSYGSLFNSFYDLE-SAYYEHY--KSIMGTKSWGIGPVSLWANQDAQDK--AARGYAKEEEEKEGWLKWLNSKAESSVLYVSFGSINK-FPYSQLVEIARALEDSGHDFIWVVRKNDGG--------EGDNFLEE--FEKRMKESNKGYLIWGWAPQLLILENPAIGGLVTHCGWNTVVESVNAGLPMATWPLFAEHFFNEKLVVDVLKIGVPVGAKEWRNWN-EFG-SEVVKREEIGNAIASLMSEEEEDGGMRKRAKELSVAAKSAIKVGGSSHNNMKELIRELKEIKLSKEAQETAPNP Medicago_truncatula_UGT73K1 -----MG--TESKPLKIYMLPFFAQGHLIPLVNLARLVASKNQHVTIITTPSNAQLFDKTIEEEKAAGHHIRVHIIKFPSAQLGLPTGVENLFAASDNQTAGKIHMAAHFVKADIEEFMKENP--PDVFISDIIFTWSESTAKNLQIPRLVFNPISIFDVCMIQAIQS------HPESFV----------SDSGPYQIHGLPHPLTLP-------IKPSP--GFARLTESLIEAE---NDSHGVIVNSFAELD-EGYTEYY--ENLTGRKVWHVGPTSLMVEIPKKKK--VVSTENDSSITKHQSLTWLDTKEPSSVLYISFGSLCR-LSNEQLKEMANGIEASKHQFLWVVHGKEGE--------DEDNWLPKG-FVERMKEEKKGMLIKGWVPQALILDHPSIGGFLTHCGWNATVEAISSGVPMVTMPGFGDQYYNEKLVTEVHRIGVEVGAAEWSMSP-YDAKKTVVRAERIEKAVKKLMDSNGEGGEIRKRAKEMKEKAWKAVQEGGSSQNCLTKLVDYLHSVVVTKSVELN---- Medicago_truncatula_UGT73F3 -----MEGVEVEQPLKVYFIPFLASGHMIPLFDIATMFASRGQQVTVITTPANAKSLTKSLSSDAPS--FLRLHTVDFPSQQVGLPEGIESMSSTTDPTTTWKIHTGAMLLKEPIGDFIENDP--PDCIISDSTYPWVNDLADKFQIPNITFNGLCLFAVSLVETLKTNNLLKSQTDSD-----------SDSSSFVVPNFPHHITLC-------GKPPK--VIGIFMGMMLETV---LKSKALIINNFSELDGEECIQHY--EKATGHKVWHLGPTSLIRKTAQEK----SERGNEGAVNVHESLSWLDSERVNSVLYICFGSINY-FSDKQLYEMACAIEASGHPFIWVVPEKKGK--EDESEEEKEKWLPKG-FEERNIG-KKGLIIRGWAPQVKILSHPAVGGFMTHCGGNSTVEAVSAGVPMITWPVHGDQFYNEKLITQFRGIGVEVGATEWCTSG-VAERKKLVSRDSIEKAVRRLMDGGDEAENIRLRAREFGEKAIQAIQEGGSSYNNLLALIDELKRSRDLKRLRDLKLDD Glycine_max_UGT73F2 -----MD--LQQRPLKLHFIPYLSPGHVIPLCGIATLFASRGQHVTVITTPYYAQILRKSSPS-------LQLHVVDFPAKDVGLPDGVEIKSAVTDLADTAKFYQAAMLLRRPISHFMDQHP--PDCIVADTMYSWADDVANNLRIPRLAFNGYPLFSGAAMKCVIS------HPELH-----------SDTGPFVIPDFPHRVTMP-------SRPPK--MATAFMDHLLKIE---LKSHGLIVNSFAELDGEECIQHY--EKSTGHKAWHLGPACLVGKRDQE-------RGEKSVVSQNECLTWLDPKPTNSVVYVSFGSVCH-FPDKQLYEIACALEQSGKSFIWIVPEKKGKEYENESEEEKEKWLPKG-FEERNR--EKGMIVKGWAPQLLILAHPAVGGFLSHCGWNSSLEAVTAGVPMITWPVMADQFYNEKLITEVRGIGVEVGATEWRLVG-YGEREKLVTRDTIETAIKRLMGGGDEAQNIRRRSEELAEKAKQSLQEGGSSHNRLTTLIADLMRLRDSKSAT------ Glycine_max_UGT73F4 -----MD--LQQRPLKLHFIPYLSPGHVIPLCGIATLFASRGQHVTVITTPYYAQILRKSSPS-------LQLHVVDFPAKDVGLPDGVEIKSAVTDLADTAKFYQAAMLLRGPIAHFMDQHP--PDCIVADTMYSWADDVANKLRIPRLAFNSYPLFAVSAMKSVIS------HPELH-----------SDTGPFVIPDFPHRVTMP-------SRPPK--MATAFMDHLLKIE---LKSHGLIVNSFAELDGEECIQHY--EKSTGHKAWHLGPACLVGKRDQE-------RGEKSVVSQNECLTWLDPKPTNSVVYVSFGSVCH-FPDKQLYEIACALEQSGKPFIWIVPEKKGKEYENESEEEKEKWLPKG-FEERNR--EKGMIVKGWAPQLLILAHPAVGGFLSHCGWNSSLEAVTAGVPMITWPVMADQFYNEKLITEVRGIGVEVGATEWRLVG-YGEREKLVTRDTIETAIKRLMGGGDEAQNIRRRSEELAEKAKQSLQEGGSSHNRLTTLIADLMRLRDSKSAT------ Glycine_max_UGT91H4 MDSVALNGKSNDKPLHVAMLPWLAMGHIYPYFEVAKILAQKGHFVTFINSPKNIDRMPKTPKHLEP-----FIKLVKLPLPKIEHLPEGAESTMDIPSKKNCFLKKAYEGLQYAVSKLLKTSN--PDWVLYDFAAAWVIPIAKSYNIPCAHYNITPAFNKVFFDPPKDKMKDYSLASICG----------------PPTWLPFTTTIHIRPYEFLRAYEGTKDEETGERASFDLNKAYSSCDLFLLRTSRELEGDWLDYLAGNYKVPVVPVGLLPPSMQIRDVEEEDN----------NPDWVRIKDWLDTQESSSVVYIGFGSELK-LSQEDLTELAHGIELSNLPFFWALKNLKEG-----------VLELPEGFEERTKE--RGIVWKTWAPQLKILAHGAIGGCMSHCGSGSVIEKVHFGHVLVTLPYLLDQCLFSRVLEEKQ-VAVEVPRSE---------KDGSFTRVDVAKTLRFAIVD-EEGSALRENAKEMGKVFSSEELHNKYIQDFIDALQKYRIPSAS----------- Vaccaria_hispanica_UGT74M1 ------MSNNENNATQVIVLPYHGQGHMNTMVQFAKRLAWKGVHVTIATTFNTIQQMKLNISS------------YNSITLEPIYDDTDDSTLHIKDRMARFEAEAASNLTRVLEAKKQQQALNKKCLLVYHGSLNWALVVAHQQNVAGAAFFTAASASFACYYYLHLESQGKGVDLEELPSILPPPKVIVQKLPKSFLAYGDNNSHNNNNNNNNNNNNNNMGLHPLVLWLLKDYGNSVKADFVLLNSFDKLEEEAIKWIS-----NICSVKTIGPTIPSTYLDKQIENDVDYGFNQYKPTNEDCMKWLDTKEANSVVYIAFGSVAR-LSVEQMAEIAKALDHSSKSFIWVVRETEKE-------------KLPVDLVEKISG--QGMVVP-WAPQLEVLAHDAVGCFVSHCGWNSTIEALSFGVPILAMPQFLDQLVDAHFVDRVWGVGIAPTVDE----------NDLVTQEEISRCLDEMMGGGPEGEKIKKNVAMWKELTKEALDKGGSSDKHIDEIIEWLSSS------------- Medicago_truncatula_UGT71G1 -----MSMSDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYIT-------VFCIKFPGMPFADSYIKSVLASQPQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHKATIKTILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDR-----------DHQLLNIPGISNQVPSNVLPDACFNKDGG-----YIAYYKLAER--FRDTKGIIVNTFSDLEQSSIDALYD-HDEKIPPIYAVGPLLDLKGQPNPK---------LDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSA--------------EKKVFPEGFLEWMELEGKGMICG-WAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSD-------VVAAEEIEKGLKDLMDK---DSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDDITGSN------------ 'Eleutherococcus senticosus UGT-10' -EVVANCINNTNSKPHAVCVPLPFSTHINHLLKLAKHLHYKGFHITFANSMFFHKTLISSKGPAAMAGLPDFRFESYNLDYTPQPNIPLTQQMMALRQAVRNQFLAPFSELLARLNDTSSNVPP-VTCIVADGVLTYALLAAEKLGIPIVLSWNVSANGFLSLHSYRDLLARCFDPSKDVSEEQ-----RNKDLDTPVDFIPGHKGIPIRDITKFIQGAG---LDFLVDGSVGEATRTSKASALIFYTFEALEKDALHS----LSSMFPRVFSIGPLPLQCYRNTEEN--AKLVGHGIWREESDSVKWLDSKDTNSVIYVSFGTTTT-VAPEQVVEIAWGLANSGYPFLWIITR---------GQVEG---VLPPEFIEEILT-DRGMIMG-WCEQEKVLNHAAIGGFFTHCGWNSVLESVAAGVPMICWPFMGEHLTTCRNCCDDWGLGLEI--------------DKDVTRENVAELLKELMEGERGRMLRSNAKEWKKKTQEAIG-LDGSSSMNLEKLVNQVLLGN------------ Arabidopsis_thaliana_UGT85A4 ---MEQHGGSSSQKPHAMCIPYPAQGHINPMLKLAKLLHARGFHVTFVNTDYNHRRILQSRGPHALNGLPSFRFETIPDGLPWT-DVDAKQDMLKLIDSTINNCLAPFKDLILRLNS-GSDIPP-VSCIISDASMSFTIDAAEELKIPVVLLWTNSATALILYLHYQKLIEKEIIPLKDSSD-------LKKHLETEIDWIPSMKKIKLKDFPDFVTTTNP--QDPMISFILHVTGRIKRASAIFINTFEKLEHNVLLS----LRSLLPQIYSVGPFQILENREIDKNSEIRKLGLNLWEEETESLDWLDTKAEKAVIYVNFGSLTV-LTSEQILEFAWGLARSGKEFLWVVRS---------GMVDGDDSILPAEFLSETK--NRGMLIKGWCSQEKVLSHPAIGGFLTHCGWNSTLESLYAGVPMICWPFFADQLTNRKFCCEDWGIGMEI--------------GEEVKRERVETVVKELMDGEKGKRLREKVVEWRRLAEEASAPPLGSSYVNFETVVNKVLTCHTIRST*------ 'Eleutherococcus senticosus UGT-11' ------------------------------------------------------------------SGSPTFRFETIPDGLPTPENQDATQNIVELCLSTSENCSVPFRDLLNKLNN-SSDVPP-VSCIVSDAIMSFSVEVSEELGIPNVFFWTVNAFTLMCYLHYSAIRELACVLHKDA---------VNEYLDSVIDWMPGTGSILMRVSSSLIWSPDL--PDSFVQYCIQEVSRTYKASAVILNTFDELECEVLKA----LSSMLNRVYTIGPIHNLSKSVIPDN-HTKSLRSNLWKEDSGCIQWLDSKQHGSVVYINFGSITV-MSPQHLVEFAWGLANSMQNFLWIIRP---------DLVMGDAAVLPLEFEMQTK--HRGFLAS-WCDQEQVLNHASIGGS*------------------------------------------------------------------------------------------------------------------------------------ ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 541; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 541; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 541; END; BEGIN TREES; Title UGTs_NJ_analysis; LINK Taxa = Taxa; TRANSLATE [0] 1 Barbarea_vulgaris_UGT73C10, [1] 2 Barbarea_vulgaris_UGT73C11, [2] 3 Barbarea_vulgaris_UGT73C12, [3] 4 Barbarea_vulgaris_UGT73C13, [4] 5 'Eleutherococcus senticosus UGT-3', [5] 6 Glycine_max_UGT73P2, [6] 7 Medicago_truncatula_UGT73K1, [7] 8 Medicago_truncatula_UGT73F3, [8] 9 Glycine_max_UGT73F2, [9] 10 Glycine_max_UGT73F4, [10] 11 Glycine_max_UGT91H4, [11] 12 Vaccaria_hispanica_UGT74M1, [12] 13 Medicago_truncatula_UGT71G1, [13] 14 'Eleutherococcus senticosus UGT-10', [14] 15 Arabidopsis_thaliana_UGT85A4, [15] 16 'Eleutherococcus senticosus UGT-11'; TREE Imported_tree_1 = ((((((1:0.00628763,2:0.00618655)0.9510:0.01818384,(3:0.01606644,4:0.02183283)0.7890:0.01624558)1.0000:0.3368028,5:0.40390771)0.9950:0.12388673,6:0.4554548)0.4790:0.02644306,(7:0.44667101,(8:0.3080012,(9:0.02524491,10:0.01265436)1.0000:0.27929976)0.9720:0.08999618)0.9510:0.10624528)0.9870:0.11903704,11:0.771388,(12:0.76916701,(13:0.65970725,(14:0.44222195,(15:0.37720362,16:0.38434629)0.7980:0.05579547)1.0000:0.22282172)0.6960:0.05188452)0.5160:0.04636073); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1423374280854; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 3205374672143231552; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 5952744826451104014; mqVersion 302; checksumv 0 3 2211221095 null getNumChars 541 numChars 541 getNumTaxa 16 numTaxa 16 short false bits 2097151 states 2097151 sumSquaresStatesOnly 6.8782641598126E13 sumSquares 6.8782641598126E13 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 261; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1109 702; setLocation 577 80; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #3205374672143231552 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #3205374672143231552; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; getTable; tell It; rowNamesWidth 245; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 848 630; setLocation 577 80; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #3205374672143231552 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 4695.1423296833731.8528161018451959405; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 848 630; setLocation 577 80; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #5952744826451104014 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 848 630; setLocation 577 80; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;