#NEXUS [written Sun Feb 22 11:31:25 CET 2015 by Mesquite version 3.02 (build 681) at Helena-PC/192.168.1.2] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=13; TAXLABELS 'Utricularia vulgaris EIN2_1' 'Utricularia vulgaris EIN2_2' Utricularia_gibba_EIN2 Genlise_aurea_EIN2 'Lotus japonicus EIN2_1' 'Lotus japonicus EIN2_2' Populus_trichocarpa_EIN2 Dianthus_caryophyllus_EIN2 Arabidopsis_thaliana_EIN2 Sorghum_bicolor_EIN2 Zea_mays_EIN2 Petunia_hybrida_EIN2 Solanum_tuberosum_EIN2 ; END; BEGIN CHARACTERS; TITLE 'Matrix in file "EIN2-align short.nex"'; LINK TAXA = Taxa; DIMENSIONS NCHAR=1361; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX 'Utricularia vulgaris EIN2_1' G-AATCCATTACGGAACTTCAAGATG---TATCAATTACAGGCCCTGTTCTGAATTTTCC 'Utricularia vulgaris EIN2_2' GAAATCCATTACAGAACATCAAGACA---TGACAATTCCAGGCCCTGTTCTAAATTTGCC Utricularia_gibba_EIN2 GAAATCTATTACAGAACGTCAAGCTA---TATCAGTTCCAGGCCCTGTTCTGAATTTGCC Genlise_aurea_EIN2 GAAATCCGTTGTCGAGCATCAAGAGACGATGGCGGCGCCGGTTCCCGTTGTGAACTTTCC 'Lotus japonicus EIN2_1' AAGGACCCCAGAGT---ACTCAGATG---CACCAGTTGCCAGTTTTCATCCTGATCTCTC 'Lotus japonicus EIN2_2' AACTACCTTGGAAT---ACTCGGATG---TATCACTTAGAAGTTTTCATCCTGATCTACC Populus_trichocarpa_EIN2 GAAATCTGCCGAGAGTTACTCGGATG---TAACTGTTGCAAATGCTGATCCTGATTTGCC Dianthus_caryophyllus_EIN2 GAGTTCCTTACTGAACCATTCCGACA---CACCAGATGCTAACTGTGATATCAATTTGCC Arabidopsis_thaliana_EIN2 G----TTGGATACTA-CGTCTGTT------ACTAGC-TCGGTCT---A---TGATTTGCC Sorghum_bicolor_EIN2 G----CCTGACAGC--CATCCGGA------GCTGGCCATGGACT---ATATTGATACTTC Zea_mays_EIN2 G----CCTGACAGC--CATCCGGA------ACTGGCCTTGGACT---ATATTGATACTTC Petunia_hybrida_EIN2 AAAATCCTTGGGAAGCCATCCTGATT---TGTCAACTTCAGACCCTGATGAAATCTTGCC Solanum_tuberosum_EIN2 TAAATCCTTGGTAAGCCATCCAGATT---TATCAACTAAAGATCTTGATCAACTCTTGCC 'Utricularia vulgaris EIN2_1' TGAAAAAATGCTTGATTTTGACAGTGAT-----------------CTTCCATTGAGTACA 'Utricularia vulgaris EIN2_2' TGAAACACTGCTCGATTTTGATAGCAAT-----------------CTTCAGTTGACTACA Utricularia_gibba_EIN2 TGAATCATTGCTTGATTTTGACAGCGAT-----------------CTTCCATTGACTACA Genlise_aurea_EIN2 CGAAACGCTGCTCGATTCTGGGAATGAT-----------------CTGTCAGTGACGACC 'Lotus japonicus EIN2_1' TGAAACTATCATGGAGCCTGATCTTCAT--------G--TGACTACTGTAAGTGAGACTC 'Lotus japonicus EIN2_2' TGAAACCATAATGGAACCAGATCCCCAT--------G--CGAACGCTGTGAGGGAGAATC Populus_trichocarpa_EIN2 TGTGACAATTATGGAGTCGGATCAGGAA----CATCATTTGACTACTATAAAAGAAAATC Dianthus_caryophyllus_EIN2 GGACACAATTATGGACACAGTTCAGGAG--CTTTACG-TG----GCTAATAGCGACGAAT Arabidopsis_thaliana_EIN2 AGAGAACATTCTAATGACGGATCAAGAAATCCGTTCGAGCC-CTCCAGAGGAAAGAGAGT Sorghum_bicolor_EIN2 TGACACTGCTGTAGAATCTGATCACGAC-TCTCAACAATCTACTGCATATGCATCCACTG Zea_mays_EIN2 TGACACTGCTGTAGAATCTGATCACGAC-TCTCAACAATCTACTGCTTATGCATCCACTG Petunia_hybrida_EIN2 CGAATCACTCTTGGATTTTGAGAAGGTC----CATCATTTGACTACCATTGATGAGAGCA Solanum_tuberosum_EIN2 AGAATCACTCTTGGATTTTGAAAAGGTC----CATCATTTGGCTACTATTGATGAGAGCA 'Utricularia vulgaris EIN2_1' ATTCCGGATAG---TAAATGTGACGCC--ACTTCTGAAACGGACAAAGTTTTTAGTCTTG 'Utricularia vulgaris EIN2_2' ATTCATGATAG---AAAATATGGCAGA--ACATCTCCTGAGATGGAAAAAGTTAATCTTG Utricularia_gibba_EIN2 ATTCAGGATAG---TAAATGTGACAGC--ACATCCTCTGCAGCAGACAAAGTTAAGCTTG Genlise_aurea_EIN2 GTTGCGGAAGACGATAAATTCGAGCTC--GCATCTTC-------GAA--TGCTGATCTCG 'Lotus japonicus EIN2_1' ATTCAATTACATCATTTCCTTGCTCCCAAACATCTGTTGTGAAGGAATCAGCTTCCACTT 'Lotus japonicus EIN2_2' ATGCTATTACATCATCAGCTTCC------ACATCAGAGTTGTCTGAGGCAGTTTCAACT- Populus_trichocarpa_EIN2 ATTCTGAAATTACATTCTCTAGTCCTGGAACATTCTATGAGGAGGAAACATCACCTATAA Dianthus_caryophyllus_EIN2 TGCCCGGTAACTCATCTGCATGCCATCCTAAGCCAAAGCAGTTAGCAAC--TTCTTCGGA Arabidopsis_thaliana_EIN2 TGGATGTAAAGTACTCTACCTCTCAAGTTAGTAGTCTTAAGGAAGACTCTGATGTAAAGG Sorghum_bicolor_EIN2 CTCCTGAAACCTGCCCCTCCCCGTCATTTACTCGTGAGGAGTCAAAATCAGTTGTTG--- Zea_mays_EIN2 CTCCTGAAACCTGCTCCTCCCCGTCGTTTACTCGCGAGGAGTCAAAATCAGTTGTTG--- Petunia_hybrida_EIN2 AATCTGAAACTACATTTTCAACCCCTTCTTTCAGCTGTCCTGAGGTATCTGCATCAGCAG Solanum_tuberosum_EIN2 AATCTGAAACAACATTTTCAGCTCCTGCTGTCGGTCATCCTGAGGTATCTGTATCAGCAG 'Utricularia vulgaris EIN2_1' ATTATTCA--------GTGGTCAGTTCAGAAA-----------CTCTTG---CAAAAGTT 'Utricularia vulgaris EIN2_2' ATGAATCA--------GCAGTCAGTTCAAAAA-----------TTCCTG---CTAAGGTT Utricularia_gibba_EIN2 ACGAATCA--------GCGTTCAGTTCAGAAA-----------CTCTTA---TGAAAGTT Genlise_aurea_EIN2 ATCAAACC--------GTG---AGTTCTGAGA-----------CGACTG---TG---GTT 'Lotus japonicus EIN2_1' CAGAATCAGAGGCAGTGTCAGATGTAATTAGTGAA---ACG-CCTGATATTAGATTGGAA 'Lotus japonicus EIN2_2' -GTATTTA-ATGATATTTCTGATTCTACAGTTGAAGATATT-TCTGATTCTACAGTAGCA Populus_trichocarpa_EIN2 TAGAGTCAGTATCTCTGTCAGCTGCTATGAATGTGGTCCCT-GGCAGTGAATTGCTTGGT Dianthus_caryophyllus_EIN2 ATCAGTGGCA--GTCTCTAGCGTGTCAACCAGGATTGAAGACGATACTTT--TCAGAAAT Arabidopsis_thaliana_EIN2 AACAGTCTGTATTGCAGTCAACAGTGGTTAATGAGGTCAGT-GATAAGGATCTGATTGTT Sorghum_bicolor_EIN2 --CAGTCAAC-TGGCCGGAGCCTTTGGAGAAGGTTCCTACT-TCTACTG---TGATAGAG Zea_mays_EIN2 --CAGTCAAC-TGGCCGGAGCCTTTGGAGAAGGTTCCTACT-TCTACTG---TGATGGAG Petunia_hybrida_EIN2 GAGAAACTGC------GAAAAGTGTTCTCAATGAG----GTGTCTGGTGGTGAATCTGTG Solanum_tuberosum_EIN2 GAGCAAGTTCCGGTGTGAAAAGTGTTTGTAATGAG----GTGTCTGGTGTTGTATCTGTG 'Utricularia vulgaris EIN2_1' GACTTGCCAGATGCTG--GCAGCT-TAATAGCCGAGACGAAGAGGATGCTGAGCATGGA- 'Utricularia vulgaris EIN2_2' GACTTGCCAGATGCCG--GCAGCT-TAATAACCGAGGCCATGACATTGTTGAGCATGGA- Utricularia_gibba_EIN2 GACTTGCCAACTACTGA--AAGCT-TAATAACCGATACAAAGAGGATGTTGAGCATGGA- Genlise_aurea_EIN2 CGATCCGCGGATGCTGATGCTCTTCTAACCGGCGAGGCGAAAATGATGGCAGAAAAAAT- 'Lotus japonicus EIN2_1' GATGCCAGAAGTTCAGATATGGAAGCACATGCTCCAGTCGAGAAAACTGTAGAAGTTGA- 'Lotus japonicus EIN2_2' GATTCCAAGATGATAAAAATGGAAACAGGGGCCCCCGTTGAGAAGACTCTGGAAGTTGA- Populus_trichocarpa_EIN2 GCCAAGAAGATTGA---TATTGAATCAATGGACTCAGTTGAAAAGACTGTGGATATAGA- Dianthus_caryophyllus_EIN2 CAAGTAACGCGGTAAACAATCGGATGGATG----CTGATGAAAAGACCTTGAGAGTTGA- Arabidopsis_thaliana_EIN2 GAAACAAAGATGGCGAAAATTGAACCAATGAGTCCTGTGGAGAAGATTGTTAGCATGGAG Sorghum_bicolor_EIN2 GAAAGCACAGTAGAAAGTGTGGTCTCTAGGATCACGACTGAAAGAGATGTTTTAGTAGA- Zea_mays_EIN2 GAAAGCACAGTAGAAAATGTGGTCTCTAGGATCACGACTGAAAGAGATGTTTTAGTAGA- Petunia_hybrida_EIN2 GATACCAGGGATTTCAATGCTGCATCTGTGGATGTAGTAGAGAAGACACTCAGAATTGA- Solanum_tuberosum_EIN2 GATACCAGTGTCTTCAATACTGAATCTGTGGATGTCGTAGAGAAGACTCTCAGAATTGA- 'Utricularia vulgaris EIN2_1' ---ATTAGATATTCAAGCTGATAAAGATGATGATACAAG---TCCCTTGGAA---CCTGA 'Utricularia vulgaris EIN2_2' ---ATCAAATGTTCAGGCTGTTAAAGATGATGATGTG------GCCTTGGAA---CCTGA Utricularia_gibba_EIN2 ---ATCTGATGTTCAAACTGGTAAAGATGATGAGATGGG---TCCATTGGAA---CCGGA Genlise_aurea_EIN2 ---ATTGGCTGTTCAAACTGTTAAGGACGAT------------------------TCTGA 'Lotus japonicus EIN2_1' ---GCAGGATTTAAATGCTGAAAGGGATGATGATGATGTAGACTTGTGGGAA---ACTGA 'Lotus japonicus EIN2_2' ---AGCAGATGCAAATGCTGAAAGGGATGCTGATGATGGAGACTCGTGGGAA---ACTGA Populus_trichocarpa_EIN2 ---TGGTGATTTCCATGCTGAAAAGGAGGACGATGAAGGGGATAGCTGGGAG---CCTGA Dianthus_caryophyllus_EIN2 ------GGGTGACTCGCCACCTGAGAAACAAGACGACAGAAATGCGTGGGAA---CCTGG Arabidopsis_thaliana_EIN2 AATAACAGCAAGTTTATT-GAAAAGGATGTTGAAGGGGT---TTCATGGGAA---ACAGA Sorghum_bicolor_EIN2 ---AACAGATGTTTTCTCAGGCAAGGATAAGGAAGATACACATGTTTTGGAG---TCTGA Zea_mays_EIN2 ---AACAGATGTTGTCTCGGGCAAGGATAAGGAAGATATCCGTACTTTGGAG---TCTGA Petunia_hybrida_EIN2 ------AGGGGACACGCCAACCGACAAGGATGACGATGGAGATTCATGGGAG---CCTGA Solanum_tuberosum_EIN2 ------AGGGGACATAGCAAATGACAGGGATGA---TGGAGATTCGTGGGAGGAGCCTGA 'Utricularia vulgaris EIN2_1' ACAGTTAGACAAAGCTGTTTCTGAGGCAAATCAGTCTTCAACATTAGAAGTTCCAGGATC 'Utricularia vulgaris EIN2_2' AGAGTTAAGCAAAGCTGAGTCTGAGGGAAATCAGTTTTCAACTTTAGAAGGTTCAGGATC Utricularia_gibba_EIN2 AGAGCTAGACAAAGCTGTTTCTGAAGAAAATCAGCCTTCAACATTAGAAGCTTCACGATC Genlise_aurea_EIN2 AAAGACGGGCAGAGATGTTTCGGAA-------AG-----AGCATCGGAAGGTCCAGGTTC 'Lotus japonicus EIN2_1' AGAAACATCCAAAGCAGTCTCAGCAAGTGCCCCGTCTTCAGCGTCGGATGGCCCAGCATC 'Lotus japonicus EIN2_2' AGAATCATCCAGAGTGGTCTCAGAAAGTTCCCCATCTTTAACATCAGATGGCCCTGCATC Populus_trichocarpa_EIN2 AGAATCATCCAAAGGGGTTCCTGGAAGCACTTCATCTTTGACATCTGATGGTCCTGGATC Dianthus_caryophyllus_EIN2 GGAATCATCTAAAGGCATTTCCGAAGTTGATCCATCTACCGCCTCTGATGGTCCAGGA-- Arabidopsis_thaliana_EIN2 AGAAGCTACCAAAGCTGCTCCTACAAGCAACTTTACTGTCGGATCTGATGGTCCTCC--- Sorghum_bicolor_EIN2 -GAAGT---CAAT--TGTTGATAGCACCC-CTTGTGTGTCTGAT--GATGGTCCACCATC Zea_mays_EIN2 -GAAGT---CAAT--TGTTGATAGCACCC-CATATGTGTCTGAT--GACGGTCCGCCATC Petunia_hybrida_EIN2 TGACGTACCTAAAGATGTATCTGAGAACACCCAATCTTATACTTCTGATGGTCCGGAATC Solanum_tuberosum_EIN2 AGAGGCAATCAAAGGAGTATCTGAGAACACTCAATCTTTTATTTCTGATGGTCCGGGGTC 'Utricularia vulgaris EIN2_1' ATTTAAAAGCT--CTAG-TGGTGGAACTGATGATATAGGGAGTAGTACTGGAAGCCTCTC 'Utricularia vulgaris EIN2_2' ATTTAAAAGCT--CTGG-TGGTGGAAATGAGGATCCAGGCAGTAGTGCAGGAAGCCTCTC Utricularia_gibba_EIN2 ATTTAAAAGCT--CTAG-TGGTGCAATTGATGATGTAGGCAGTGGTACAGGAAGCCTCTC Genlise_aurea_EIN2 GTTGAAAAGCAGCCTCGGTTGTAAGATCGACGACGTAGCCGGTGGTGCGGGAAGCCTTTC 'Lotus japonicus EIN2_1' ATTCAGGAGCC---TTAGTGGGAAAAGTGATGATGGGAGTAATAGCATTGGAAGCCTTTC 'Lotus japonicus EIN2_2' ATTCAGGAGCA---TTAGTGGGAAAGGTGATGAAGGCGGGAATAGCTTTGGAAGTCTTTC Populus_trichocarpa_EIN2 ATTTAGGAGTC---TTAGTGGTAAAAGTGATGAGGGTGGGAATGGTGCTGGAAGTCTTTC Dianthus_caryophyllus_EIN2 ----TCATTCA---GAAGTCTTTCTGG---------------TGGC---GGCAGTCTTTC Arabidopsis_thaliana_EIN2 ---TTCATTCC---GCAGCTTAAGTGGG---GAAGGGGGAAGTGGGACTGGAAGCCTTTC Sorghum_bicolor_EIN2 TCTTACCTTCA---GCAGGGGAAAAGGCTCAGATGCAGGAAATGGCAATGGTAGTCTCTC Zea_mays_EIN2 CCTTACTTTCA---GCAGGGGAAAGGGCTCAGATGCAGGAAATGGCAGTGGTAGTCTCTC Petunia_hybrida_EIN2 ATTCAAGAGTC---TTAGTGTCAGGTCAGAAGACACAGGGAGTGGTACAGGAAGTCTATC Solanum_tuberosum_EIN2 ATACAAAAGTC---TAAGTGGAAAACTAGAGGACATGGGGAGTGGTACGGGAAGTCTATC 'Utricularia vulgaris EIN2_1' GAGATTAACTGGATTAGGCCGCTCTGCAAGGCGGCAGTTAACTGCCATTGTAGATGAGTT 'Utricularia vulgaris EIN2_2' AAGATTATGTGGATTAGGTCGTTCTGCAAGGCGGCAGTTTACTGCCATTCTAGATGAGTT Utricularia_gibba_EIN2 AAGGCTAGCTGGATTAGGTCGCTCTGCAAGACGGCAGTTAACTGCCTTTCTAGATGAGTT Genlise_aurea_EIN2 GAGAACAGCCGGATTAGGCCGTGCTGCGAGGCGCCAGCTGACGTCCATTCTGGATGATTT 'Lotus japonicus EIN2_1' GAGACTTGCAGGTTTAGGCCGTGGCGCAAGGCGTCAGCTAGCTGCTATTCTTGATGAATT 'Lotus japonicus EIN2_2' AAGAATAGAAGGCTTAGGGCGTGCAGCAAGACGTCAGTTAGCTGCTGTTCTTGATGAATT Populus_trichocarpa_EIN2 AAGATTAGCAGGGTTGGGTCGTGCTGCAAGACGCCAATTAGCTTCAGTTCTTGATGAGTT Dianthus_caryophyllus_EIN2 TAGACTTTCAGGACTCGGCCGTGCAGCAAGACGACAGATGGCTTCGGTCCTTGATGAATT Arabidopsis_thaliana_EIN2 ACGGTTGCAAGGTTTGGGACGTGCTGCCCGGAGACACTTATCTGCGATCCTTGATGAATT Sorghum_bicolor_EIN2 GAGGCTATCCGGTTTGGGCCGTGCGGCAAGGAGGCAGCTAGCTGCTACTCTTGATGAGTT Zea_mays_EIN2 AAGGTTATCTGGTTTGGGCCGTGCAGCAAGGAGACAGCTAGCTGCTACTCTTGATGAGTT Petunia_hybrida_EIN2 AAGATTAGCAGGTCTTGGTCGTGCAGCTAGGAGGCAGTTAACAGTAGTTCTAGATGAGTT Solanum_tuberosum_EIN2 AAGATTAGCAGGTCTTGGTCGCGCAGCTAGGAGGCAGTTAACAGAAGCTCTAAATGAGTT 'Utricularia vulgaris EIN2_1' TTGGGGGCAACTTTTTGGTTATCATGGCGAAGCAACAGATGAAGCCAAAGCAAGGAAATT 'Utricularia vulgaris EIN2_2' TTGGGGCCAACATTTTGGGTATCATGGTGAAGCTACTGAGGACGCCAAAGAAAAGAAATT Utricularia_gibba_EIN2 TTGGGGACAACTTTTTAGTTATCATGGTGAAGCCACAGAGGAAGCCAAGGAAAAGAAATT Genlise_aurea_EIN2 TTGGGGTCAGTTTTTCGGCTATCACGGTGAGGTAACCGACGAAGCGAAAGCTAAGAAACT 'Lotus japonicus EIN2_1' CTGGGGACAACTTTATGATTTCCATGGGAAATTTACCACGGACGCTAAGGCTAAGAGGCT 'Lotus japonicus EIN2_2' CTGGGGGAAGCTTTATGATTTCCATGGACTAGCAACCCATGAAGCAAGGGCTAAGAAAAT Populus_trichocarpa_EIN2 TTGGGGACAATTGTATGATTTCCATGGGCAAACAACTCAAGAAGCAAAGACCAAGAAACT Dianthus_caryophyllus_EIN2 TTGGGGACAACTCTATGATTTCCATGGTCAAATAACTCAAGAAGCAAGGAGTAAGAAACT Arabidopsis_thaliana_EIN2 TTGGGGACATTTATATGATTTTCATGGGCAATTGGTTGCTGAAGCCAGGGCAAAGAAACT Sorghum_bicolor_EIN2 CTGGGGGCATCTGTTTGATTACCATGGTAAGCTCACTCAAGAAGCCAGCACAAAAAAGTT Zea_mays_EIN2 CTGGGGGCATCTGTTTGATTACCATGGTAAGCTCACTCAAGAAGCTAGCACCAAAAAGTT Petunia_hybrida_EIN2 TTGGGGACAGCTTTTTGATTACCATGGGATGCCCACATCACAAGCAAAGTTCAAGAAACT Solanum_tuberosum_EIN2 TTGGGGGCAGCTTTTTGATTACCATGGCATGGCCACAGCAGAAGCAAAGTCCAAGAAACT 'Utricularia vulgaris EIN2_1' ATATGTTCTTATAGGAGCAGATTTCGGCATATATCTGAAATCATCATCATCTATC---AA 'Utricularia vulgaris EIN2_2' AGATGTTCTATTAGGTGTGGATTTTGGAATAAGTCCAAAGCCGTTCTCATCTGTT---AA Utricularia_gibba_EIN2 GCATGTTCTTTTAGGTTTGGATTTTGGAATAAGTACGAAAGTGTCTTCATCTGTT---AA Genlise_aurea_EIN2 GGATGTTCTAATCGGGATCGATTCCGCATCTTCTGTGTCATCATCATCATCAATG---AA 'Lotus japonicus EIN2_1' GGATGTTTTACTAGGAGT------AGATTCGAGGCTC---GCCGGCGGCTCTTTGCAGAA 'Lotus japonicus EIN2_2' TGATGATTTGCTAGGACTGGGAGCAGATTCAAGAC------CCACCAGTTCCTTCCAGAG Populus_trichocarpa_EIN2 GGATGCCCTG---GGGGT------TGATTTGAAGCCT---TC-------TTTGTT--GAA Dianthus_caryophyllus_EIN2 GGATTTGCTTCTTGGTGC------AGATTCTAAGCCA---TCATCACAATCGGTATCGAA Arabidopsis_thaliana_EIN2 AGATCAGCTGTTTGGCAC------TGATCAAAAGTCA---GC---CTCTTCTATG---AA Sorghum_bicolor_EIN2 TGGTATCTTGCTTGGGAT------AGACCTTAGAACA---CCTACCACAGCTGTA---AG Zea_mays_EIN2 TGGTATCTTGCTTGGGAT------AGACCTTAGAACA---CCTAGCACATCTGTA---AG Petunia_hybrida_EIN2 GGATGTAATACTCGGTCTGGATACAAAAGTGGATCCAAAACCTGCCCCAGTGTCATTAAA Solanum_tuberosum_EIN2 GGATATAATACTTGGTCTGGATTCAAAGATGAGTCCAAAACCTGCCCCTGCATCATTAAA 'Utricularia vulgaris EIN2_1' AATGGAGAATATCAGC---CAGCTTCCT----ACTGGATATGTTAATGCCAATGCTGGTA 'Utricularia vulgaris EIN2_2' ATTGGAAAATACCAGC---CAGCTGCCT----ACTGGATATACTCTTGTCAATGCTGGGA Utricularia_gibba_EIN2 AATGGACACTATCAGC---CATCAGCCT----ACTGGATATACTCATGTTAATGCTGGGA Genlise_aurea_EIN2 AACCGAAAATCTGAACAAGCAGCAGCCT----ACCAGA------------AGCTCTGATA 'Lotus japonicus EIN2_1' AGTGGATTCAAATGCAAAGGAATATTCTGAATA-CCTAATTCCCGTTGGAAGTAGAGCTC 'Lotus japonicus EIN2_2' AGTGGATGCATGCGGAAAGGACTATTCTGAATA-CTCACTATCTGTAGGAGGTAGAACTT Populus_trichocarpa_EIN2 AGTGGACA----CTGCTGGGAAAGAATTTAG---CGGATATTTCTCATCTGTTGGTGGTA Dianthus_caryophyllus_EIN2 ATCAAATCCTGCGGGGAGGGAGTTGGTAATGCAGTC-ACAATCTTTGGGAGGCAGAGTTT Arabidopsis_thaliana_EIN2 AGCAGATT----CGTTTGGAAAAGACATTAGCAGTGGATATTGCATGTCACCAACTGCGA Sorghum_bicolor_EIN2 AACGGATAAGCAAGCTGTTGAAATACCCAAG-AGCCCAC-TGGTGAGAGACTCAATGCGG Zea_mays_EIN2 AACGGATAAACAAGCTGCTGAAATACTTAAG-AGCCCAC-TGGTGAGAGACTCAATGCGG Petunia_hybrida_EIN2 ACTGGAGAA--CAGCAGGGGTGATTCTAATG---CGTATATTCCATCTG--GTAGTGCAA Solanum_tuberosum_EIN2 AGTGGAAAG--CA----G-----------TG---CGTATATTCCATCGG--GGAGTGCAA 'Utricularia vulgaris EIN2_1' CTCCACCAGATCCTCTCCAATCATCAAGT-TACTTCAGTTCTTCAAATCAGCAGCTTGGT 'Utricularia vulgaris EIN2_2' CTGCATCAGATCCTCTCCAGTCATCA----------------------------CTTGGT Utricularia_gibba_EIN2 CGGCATCAGATCCTCTCCAATCATCAAGT-TACCTCTGTTCTTTAAATCAACAGCTTGAC Genlise_aurea_EIN2 CTGCTTCGGATTCTTTCCAACCGTCGACT-TACTTGAACTATTTCAACCAGCAGAATCA- 'Lotus japonicus EIN2_1' CTGATA------CTTCAATGAACTCTGCTCCATATGAC-TCTCCTAGGCAGCATAGGATT 'Lotus japonicus EIN2_2' CCGACA------CTCCAATGAACGCTAGTTCATTTGAC-TCTTCCAAGCAGCCTAGGATG Populus_trichocarpa_EIN2 GAGCATCTGATTCTCAGATCCATTCAAGTTTGGGCGAC-TCTCCCAATCATTTGAGGGTT Dianthus_caryophyllus_EIN2 CTGGCA-----ATAC-GATTAACTCAAGTTTATATAAC-AGTCCAGATCAGCAGAAGTTG Arabidopsis_thaliana_EIN2 AGGGAATGGATTCACAGATGACTTCAAGTTTATATGAT-TCACTGAAGCAGCAGAGGACA Sorghum_bicolor_EIN2 GGGGCA--GCTTTTTTGTCAAGTTCA-GTGGACCTGATGTCCCCTAAGAAT-----GAGA Zea_mays_EIN2 GGGGCA--GCTTTTTTGTCAAGCTCA-GTGGACATGATGTCCCCTAAGAAT-----GAAA Petunia_hybrida_EIN2 GGGTACCTGAGTCATGGATCAACTCG----AATATATACTCTCCCAAGCAGCAATGTGCA Solanum_tuberosum_EIN2 GGATACCAGAGTCTCTGATCAACTCG----AATATGTACTCTCCCAAGCAGCAATTTGCG 'Utricularia vulgaris EIN2_1' CGACGGGGTCCTGGATCACCCCACGATATGCAGCAAAG---ACCA---------TCAG-T 'Utricularia vulgaris EIN2_2' GAACGGGGTGTTGGATCATCCCACGATTTGCAGCAAAGGTCGCCA---------TCAC-T Utricularia_gibba_EIN2 CAACGAGGTGCTGGATCACCTCACGGTATGCAGAAAAGGTCCCCA------------A-C Genlise_aurea_EIN2 -ATCGC--TCCCG--TCGAGGCA---TACGCAGCG------------------------- 'Lotus japonicus EIN2_1' CAAAGTAATATGGAGGCTTCCTATGGACTTCAAAGGAACTAT---------TCCTCCT-T 'Lotus japonicus EIN2_2' CAAAGTAATTCAGAGTCTCCGTATGGTCTTCAAAGAAGTTCT---------TCCTCTA-G Populus_trichocarpa_EIN2 CCGAGCAATATCGACTCATCTTATGGAGGTCAGAGGGGACC---------ATCCTCTT-T Dianthus_caryophyllus_EIN2 TTCGACAGTATAGAAGCGGCGTATAAGGCTCATAGAGCATCTACTTCGATATGGTCAA-A Arabidopsis_thaliana_EIN2 CCGGGAAGTATCGATTCGTTGTATGGATTACAAAGAGGTTC------GTCACCGTCACCG Sorghum_bicolor_EIN2 CATCGAATTTGGAACTTGCA-TATGGGCTTCAGAGGGGACCGGCCATGGGATTGTCAA-G Zea_mays_EIN2 CGTCGAATTTGGAACTTGCA-TATGGGCTTCAGAGGGGACCTGGCATGGGATTGTCAA-G Petunia_hybrida_EIN2 TCAGGTGCTCTGGACTCTGGTTATAGAGTCCCGAAGGAGCCAGCTTCA------------ Solanum_tuberosum_EIN2 TCAAGCATTGTGGACTCTGCTTATAGAGTCCCAAAGGAGCCTTCTTCGACATCTTCTA-T 'Utricularia vulgaris EIN2_1' TATTGCTAAGCCGATGGGTTTTCTCGATTCGTATTTGCAAAACAGGAGCTTCAATA-CTA 'Utricularia vulgaris EIN2_2' TGTCCCTAAGCCGATGGGTTTTTTCGATTCATATGGGCAAAACAGGAACTTCAATA-TGG Utricularia_gibba_EIN2 CGTCTCTAATCCAATGGGTTTTTTCGATTCATACGGGCAAGACAGCAGCTCCAGTA-TGG Genlise_aurea_EIN2 ---------------------TGTAGATGCATACGGGCCGAACAGCGGCTTCAACG-TGG 'Lotus japonicus EIN2_1' ACGGGCAAATTCCACCCATTTATTAGATGATTATGCACCGACCTCCTGCCGCAATC-TTG 'Lotus japonicus EIN2_2' CATGGCAAATCCCATCCAGTTATTGGATGCATATGTACAGA---------GAAATG-TCC Populus_trichocarpa_EIN2 GTGGTCCAACCACATGCAGTTGATGGATGCATATGCACAAGGTCCCAGCCGCAGTA-TAG Dianthus_caryophyllus_EIN2 CCCGCC--A-----C-CAGTT-TCAGACACGTATGTGCAGAACTCTAACCGCAGTC-TTC Arabidopsis_thaliana_EIN2 TTGGTCA-ACCGTATGCAGATGTTGGGTGCATATGGTAACACCACTAATAATAATAATGC Sorghum_bicolor_EIN2 CTGGTCTCAGGGTATGCAGCTACCAAACACACAGCTGCAGAGCTCAAGCAACAGCC-TAC Zea_mays_EIN2 CTGGTCTCAGGGTATGCAGCTACCAAATACACAGCTGCAGAGCTCAAGCAATAGCC-TAC Petunia_hybrida_EIN2 -TGGTCTAGCCATATGAAATTATTAGATGCATATGTGCAAAGTTCCAGCGGCAACA-CAC Solanum_tuberosum_EIN2 GTGGTCTAACCATATGAAATTAGTAGGTGCGTACGTGCAAAGTTCCAACAGCAACA-TAC 'Utricularia vulgaris EIN2_1' GTGACAT--TATGGAAAGGCGCTATTTTAGTTTACACACTCCATCTTCT---GATGTTTA 'Utricularia vulgaris EIN2_2' TTGACAC--TATGGAGAGACGCTATTTTAGTTTACGCACTCCCTCATCTTCTGATGTTTA Utricularia_gibba_EIN2 CTGACAT--GATGGAGAGGCGCTATTCTAGTTTACGCTTTCTCTCATCTTCTGATGGTTA Genlise_aurea_EIN2 TCGACTT--CGGGGAGAGGCGATATTTCAGCGTGCACGTCCCCTCGTCCTCCGGCGGCTA 'Lotus japonicus EIN2_1' TTGATGC--TGGTGAAAGGCGCTATTCCAGTGTGCGCAATCTGCCATCATCTGGGGTTTG 'Lotus japonicus EIN2_2' TTGATTC--TGGTGAGCGGCGCTATTCCAGTGTGCGCAATCTACATTCATCTCAAGCTTG Populus_trichocarpa_EIN2 CTGACTC--AAGTGAGAGACGGTATTCTAGTGTACACACGCTACCATCTTCTGATGGCCG Dianthus_caryophyllus_EIN2 TTGATTC--AGGGGAGAAGCGGTATCATAGTGTACGTCTCCCGTCATCTTCTGAGAGGTC Arabidopsis_thaliana_EIN2 TTACGAATTGAGTGAGAGAAGATACTCTAGCCTGCGTGCTCCATCATCTTCAGAGGGTTG Sorghum_bicolor_EIN2 TTGAGCA--AAGTGCAAGATTAAACTCAAATTTTAGTGCGCCATCTTATTCAGACAACAA Zea_mays_EIN2 TTGAGCA--GAGTGCAAGATTAAACTCAAATTTTAGTTC---ATCTTATTCAGACAACAA Petunia_hybrida_EIN2 TTGACTC--GGGTGAGAGGCGCTATTCCAGCATGCGGATTCCTGCGTCTTCTGCTGGCTA Solanum_tuberosum_EIN2 TTGACCC--AGGGGAGAGGCGCTATTCTAGTATGCGGATTCCAGCGACTTCTGCTGGCTA 'Utricularia vulgaris EIN2_1' TGAT---CAACAGCCTGCTACTATACATGGTTATGACATGAGTTCATGCCTGGATCAACT 'Utricularia vulgaris EIN2_2' TGAT---CAACAACCTGCGACTGTGCATGGTTATGATATGAGTTCGTACCTGGGTCAACT Utricularia_gibba_EIN2 TGAT---CAACAGCCGGCTACTGTGCATGGTTATGATATGAGTTCATACCTGAGTCAACT Genlise_aurea_EIN2 TGAT---CAGCAACCGGCCACGATTCATGGTTACGAGCTGAGGTCGTATCTCGGCCAGTT 'Lotus japonicus EIN2_1' GGAT---TATCAGCCAGCTACTGTACATGGTTACCAGATTGCATCGTATATGAGCCAGGT 'Lotus japonicus EIN2_2' GGAC---TATCAGCCGGCTACCATACATGGTTATGAGACTGCATCCTATCTTAGCCGGGG Populus_trichocarpa_EIN2 GTGTAT---TCAGCCAGCTACAGTGCATGGTTATCAGATTGCATCCATCATCAATCAAAT Dianthus_caryophyllus_EIN2 AGAA---TATCAGGCAGCAACTGTACATGGTTATCAATTGGCATCTTATGCTAATCGTGC Arabidopsis_thaliana_EIN2 GGAACACCAACAACCAGCTACAGTTCACGGATACCAGATGAAGTCATATGTAGACAATTT Sorghum_bicolor_EIN2 TCAATTCTACCAACCTGCAACAATTCATGGGTACCAGCTCACATCTTACTTGAAACAGAT Zea_mays_EIN2 TCAGTTCTACCAACCTGCAACAATTCATGGATACCAGCTCACATCTTACCTGAAACAGAT Petunia_hybrida_EIN2 TGAT---CAGCAGCCTGCGACTGTGCATGGATATCAGATCTCCGCTTACCTAAGTCAAAT Solanum_tuberosum_EIN2 TGAT---CAGCAGCCTGCCACTGTGCATGGATATCAAATTACTGCTTACCTTAATCAACT 'Utricularia vulgaris EIN2_1' T---GCGAAAC--GA---GTTTCG--CCAAA-AAC---TCAGCCAGATTCAAGCTCCACC 'Utricularia vulgaris EIN2_2' T---GCACAAGA-AAGGGGTGGTGTTTTGCC-AAATAGTCAACCAGATTCAAGCTCCAAC Utricularia_gibba_EIN2 T---GCGAAAGAAGGAAGCTGTCTCACATCA-AAGGG-TCAACCAGACACAAGCTCCAAA Genlise_aurea_EIN2 A---GCGAAAGA-GAAAGGTTACGGTCTGCA-GACGGTTCAACCGGATTCGCCTCCGACT 'Lotus japonicus EIN2_1' T---GGTAAAGG-CAGAAATTCTGA-TAACTTAAATGCTCCAATGGAATTGTCTCCCATG 'Lotus japonicus EIN2_2' T---GGTAATGA-CAGAAATTCTGA-TAACGTAAGTGCTCCAATGCAATTATCATCACTG Populus_trichocarpa_EIN2 T---GCTAAGGA-AAGAGGTTCCAG-TAGCTTAAATGGTCAAATGGACTCACCAGCACCG Dianthus_caryophyllus_EIN2 C---GCCAAAGA-CAGGTCTGATTA--TGC--ATTTGGCCGACTAGAATCTGTGCCTCAA Arabidopsis_thaliana_EIN2 G---GCAAAAGA-AAGGCTTGAAGCCTTAC--AATCCCGTGGAGAGATCCCG-ACATCGA Sorghum_bicolor_EIN2 GAATGCCAGCAG-AAACCCTTACTC-TAGC--ATGCCACTGGACCCACAGCG-GCTTCCA Zea_mays_EIN2 GAATGCCAGCCC-AAGCCTTTACTC-TAGC--ATGCCGCTGGACCCACAACG-GCTTCCA Petunia_hybrida_EIN2 T---GCTAAAGG-AAGAGGATCTGA-TTATTTAAATGGGCAACTGGAGTCAGCATCCCCT Solanum_tuberosum_EIN2 T---GCGAAAGA-AAGAGGATCTGA-TTATTTAAATGGGCAACTGGAGTCACCATCTCCT 'Utricularia vulgaris EIN2_1' CCTTCGA---TGATAAACTCGGTGAATTCGTATGGCAGACAATC-------GTCTAATAA 'Utricularia vulgaris EIN2_2' CCTTCATTGATGTTAAATCCTGTGAATTCATATGGTAGACAATT-------GTCTCATAA Utricularia_gibba_EIN2 CCTTCAGTAATGCTTAACCCTGTGAACCCATACGGCAGACAATC-------GTCTCATAA Genlise_aurea_EIN2 CCCTCGGCTCTGTCGAATTCCGTAAATTCGTATAGCGGCCGATCCT-CCCCGTCTCAGAA 'Lotus japonicus EIN2_1' AAATCCCCT-TCCATGAGTAGTACAAA-CTACAGGAATTCTAT------ACTTGCTTTGA 'Lotus japonicus EIN2_2' AAAACCCCT-TCCGTAGGTAATACAAA-CTACAGGGATTCACTT---GCATTTGCTTTAG Populus_trichocarpa_EIN2 ATATCACCA-TCCTTGGGCCCTAGAAA-CTACAGGGACCCACTT---ACTGTTGCTATGG Dianthus_caryophyllus_EIN2 AAGTCACCG-T-CTTTGGTTCCCAAC--AATTACGAAGAATCTTTTGGTTTTACGTCGGG Arabidopsis_thaliana_EIN2 GATCTATGG-CGCTTGGTACATTGAG--CTATACACAGCAACTT---GCTTTAGCCTTGA Sorghum_bicolor_EIN2 AAATCAT-----CTGTGTCTGCTGTG--CCAACCTATGTTGATT---CCATGATGAATGC Zea_mays_EIN2 AAATCAT-----CTGTGTCTGCTGTG--CCAAACTATGCTGATT---CCATGATGCATGC Petunia_hybrida_EIN2 CGTTCTGTA-TCATCATTGACGTCAAA-CCATGCTGAACCATTA---GCTCGTGCTTTGG Solanum_tuberosum_EIN2 CGTTCTGTA-TCATCACTGACGTCAAA-CTATGCCGAACCATTG---GCTCGTGCTTCGG 'Utricularia vulgaris EIN2_1' GCC--ACTCAGCGGATTGC---GTTATCACACA--CCCCCTGGATTTCACAATGTACCTG 'Utricularia vulgaris EIN2_2' GCC--ACTCAGTGGACTTC---GTAATCAGGCA--CCCCCAGGGTTTCATAATGTACCTG Utricularia_gibba_EIN2 ACC--AGTCAGTGGACTGC---GTAATCAGACA--CCTCCGGGGTTTCATAATGTACCTG Genlise_aurea_EIN2 GCC--GATCGGCGGCGTGCAACGCAACCTTACT--CCTCCGGGGTTTCACAACGTGCCTG 'Lotus japonicus EIN2_1' GGCAAAAGATGCAGAATGGTTTAGGTGCTGGCCAACCCCCTGGCTTTGAAAATGTTTCTA 'Lotus japonicus EIN2_2' GGAAAAAGTTGCATAATGGTTCAGGTCTTGGCCAACCACCAGGGTTTGAAAATGT----- Populus_trichocarpa_EIN2 GGCAAAAATTGCAAAATGGACCAAGCTCTTCACAACCACCAGGATTTCAGAACCTTGCAG Dianthus_caryophyllus_EIN2 GCG-GAATTCTGAAAATGGACTTCATGCTGCACAGACTTCGAGCTTTCAAAACTTTCCAG Arabidopsis_thaliana_EIN2 AACAGAAGTCCCAGAATGGTCTAACCCCTGGACCAGCTCCTGGGTTTGAGAATTTTGCTG Sorghum_bicolor_EIN2 TC--GTAATCATAATCTGCTTGCTTCACTGGGT--GCTACTCCTTCACAGATTCCTGCAA Zea_mays_EIN2 TC--GTAATCATAACCTGCTTGCTTCACTGGGT--GGTACTACTACACAGCTTCCTGCAA Petunia_hybrida_EIN2 GGCAAAAACCTCAGAGTGGAGTGAGTAGTCGAGCACCACCTGGTTTTGGAAGTGTCCCTG Solanum_tuberosum_EIN2 GGCAAAAACCCCAGAGTGGAGTCAGTAGTCGAGCACCACCTGGTTTTGGAAATGTCCCTG 'Utricularia vulgaris EIN2_1' TGGCTCGTAATATTGCACCGAACTCTGAAAGATACCTGAATGATCGCTACACCTC-TGAA 'Utricularia vulgaris EIN2_2' CGGCTCGTAATAGTGCATTGAAATCTGAGAGATATTTGAATGATCTTTACGCCTT-TGAA Utricularia_gibba_EIN2 TTGCCCGTAATAATGCATTGAAATCTGAAAGATACTTGAATGATCTTTACTCCCA-TGAA Genlise_aurea_EIN2 TGGCGAGAAA-----CGCCGCTCTCAGATCGC-AATGGAGCAGTCTTTACTCCCC-GGAA 'Lotus japonicus EIN2_1' CCTCTATGAATTGCCGAATTCCATCTGAGAGGTCCCAATATGACTCTCGCACTTC-GGGA 'Lotus japonicus EIN2_2' -CTCTAGAAATAGCCAATTGCAATCTGAGAGGTCCCAATATGATTTTTGCTCTTC-TGGA Populus_trichocarpa_EIN2 TATCTAGAAATAGCACGTTGCAATCTGAAAGACATTATCATGATGTTTACTCTTC-TGGA Dianthus_caryophyllus_EIN2 TGCAAAGAAGAAATTTTGACCAATTTGATAGAGCTAGTTACGAATTTTCTGCTGG----- Arabidopsis_thaliana_EIN2 GGTCTAGAAGCATATCGCGACAATCTGAAAGATCTTATTACGGTG-TTCCATCTTCTGGC Sorghum_bicolor_EIN2 CATCCCGTGTAGGCTCAATGATGCCTGAAAGATCGTATTACGATCCTTCCACTGT-TGAT Zea_mays_EIN2 CATCCCGCGTAGGCTCAATGATGCCTGAAAGATCGTATTATGATCCTTCCAGCGT-TGAT Petunia_hybrida_EIN2 ---CCCGAAATAACTCGATGCAGCCCGTTAACACTTCTACTGACCTTAGCTCTAC-GGAA Solanum_tuberosum_EIN2 TAGCCCGAAATAATTCCATGCAGCCCAATAACACCTCTATCGACCTTAGCTCTAC-TGAA 'Utricularia vulgaris EIN2_1' GTTGAGCACAGTACTATTAACCCGT---CTGATGTGAAGAAGTTTCACAGCTTGCCTAGT 'Utricularia vulgaris EIN2_2' GCCGAGGATCGTATCAATAGCCCTT---CTGATGTGAAGAAGTTTCACAGCTTGCCTAGC Utricularia_gibba_EIN2 GCTGATGGTCGTACTACTGATCCTT---CTGACGTGAAAAAGTTTCACAGCTTGCCTAGC Genlise_aurea_EIN2 TTCGCTGACCGGAGTAGTCACTCTC---CCGATACGAAGAAATATTACAGTTTGCCGGAT 'Lotus japonicus EIN2_1' TCTACAAATAATGCAGTCAGTTCAG---TTAATACTAAGAAGTACCACAGCTTGCCAGAC 'Lotus japonicus EIN2_2' CCTGCAGATAATACTGTCAGTTCAG---TTAATACCAAGAAGTACCACAGCTTACCAGAC Populus_trichocarpa_EIN2 TCTGCTGATGATGCTGGCAAGTCAG---CTAATACGAAGAAGTACCATAGTTTGCCTGAC Dianthus_caryophyllus_EIN2 ACCAATTGAAAGGATGAGTAACCAT--AATAATGCCAAACAATATCACAGTTCGCCAGAC Arabidopsis_thaliana_EIN2 AATACTGATACTGTTGGCGCAGCAGTAGCCAATGAGAAAAAATATAGTAGCATGCCAGAT Sorghum_bicolor_EIN2 GGGAATGAAAATTCTGGTTCGCCTG---CTTACTCAAAAAAGTACCACAGCTCACCTGAT Zea_mays_EIN2 GGGAATGAAAACGCTGGTTCACCTG---CTTACTCAAAAAAGTACCACAGCTCACCTGAT Petunia_hybrida_EIN2 AATGCTGAGAGCGTAGCTGGCTCAG---CCAACTCGAAGAAGTATTACAGCTTGCCTGAT Solanum_tuberosum_EIN2 ACTGCTGAAAGCGTGGCTGGCTCAG---CCAACTCTAAGAAGTACTACAGCTTGCCTGAT 'Utricularia vulgaris EIN2_1' ATTTCACGACTATA-TAGTCCTCAAAGGGATTCTTCAATGC 'Utricularia vulgaris EIN2_2' ATTTCACGACTTTA-TAGTCCTCAAAGGGATCCTTCAATGT Utricularia_gibba_EIN2 ATTTCACGACTTTA-TAGTCCTCAAAGGGATTCGTCATTGC Genlise_aurea_EIN2 ATATCGGGGCTCCA-TAACTCTCAGCAAGATTCCTCCGTGT 'Lotus japonicus EIN2_1' ATTTTAGGATATGCCATTCCTGCCAGGG-ATGCTTACATGT 'Lotus japonicus EIN2_2' ATTTCAGGATACTCCATCCCCCACCGGG-CTGGTTATGTAT Populus_trichocarpa_EIN2 ATCGCAGGGCTTGC-TGGTCCTTACAGGGACCTATATATGT Dianthus_caryophyllus_EIN2 ATTTCTGCACTTTC-TGCACGACTCCGAAATTCCTATTTGT Arabidopsis_thaliana_EIN2 ATCTCAGGATTGTCTATGTCCGCAAGGA-ACATGCATTTAC Sorghum_bicolor_EIN2 ATGTCTGGAATA---ATCGCTGCAAGTAGAGCTGCACTGTT Zea_mays_EIN2 ATGTCTGGAATA---ATCGCTGCAAGTAGAGCTGCACTCTT Petunia_hybrida_EIN2 ATATCAGGACGCTA-TGTTCCTCGCCAAGATTCTTCACTCC Solanum_tuberosum_EIN2 ATCTCAGGGCGCTA-TGTTCCTCGCCAAGATTCTTTAGTCT ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1361; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1361; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1361; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1424601085446; linkFile 'EIN2_MP_ML_final.tre'; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 3204075171385894804; tell It; attachments ; endTell; setID 1 7074555562202995087; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 7418193526481610090; mqVersion 302; checksumv 0 3 4016995839 null getNumChars 1361 numChars 1361 getNumTaxa 13 numTaxa 13 short true bits 15 states 15 sumSquaresStatesOnly 357663.0 sumSquares 357663.0 longCompressibleToShort false usingShortMatrix true NumFiles 2 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #7074555562202995087 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #7074555562202995087; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 392; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #7074555562202995087 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTaxa #7074555562202995087; setTreeBlockInt 0; toggleUseWeights off; endTell; setAssignedID 2016.1424600674095.2299023525035377146; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 392; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #7418193526481610090 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 279; endTell; setExplanationSize 30; setAnnotationSize 40; setFontIncAnnot 0; setFontIncExp 0; setSize 600 372; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;