#NEXUS [written Wed Jun 10 10:59:10 CEST 2015 by Mesquite version 3.02 (build 681) at AG-SCHUESSLER-HP7900_1/10.153.191.186] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=83; TAXLABELS Zea_mays_ACG43022 Candidatus_Arthromitus_AID44552 'Mollicutes sp. DhMRE_0026_SB' 'Mollicutes sp. DhMRE_0031_SA' 'Mollicutes sp. DhMRE_0091_SA' 'Mollicutes sp. DhMRE_0349_SA' 'Mollicutes sp. DhMRE_0521_SA' 'Mollicutes sp. DhMRE_0574_SA' 'Mollicutes sp. DhMRE_0602_SA' 'Mollicutes sp. DhMRE_0673_SA' Oryza_sativa_EEC78293 Oryza_sativa_Indica_Group_EEC82761 Actinomyces_sp_EEZ77319 Propionibacterium_acnes_EFT55623 Rhizophagus_irregularis_ERZ99038 Rhizophagus_irregularis_ESA23675 Reticulomyxa_filosa_ETO06916 Candidatus_Entotheonella_sp_ETX03748 Rhizophagus_irregularis_EXX50138 Rhizophagus_irregularis_EXX52070 Rhizophagus_irregularis_EXX52799 Rhizophagus_irregularis_EXX53579 Rhizophagus_irregularis_EXX53679 Rhizophagus_irregularis_EXX57010 Rhizophagus_irregularis_EXX57629 Rhizophagus_irregularis_EXX59664 Rhizophagus_irregularis_EXX60083 Rhizophagus_irregularis_EXX62203 Rhizophagus_irregularis_EXX62449 Rhizophagus_irregularis_EXX62915 Rhizophagus_irregularis_EXX64131 Rhizophagus_irregularis_EXX68008 Rhizophagus_irregularis_EXX68629 Rhizophagus_irregularis_EXX68646 Rhizophagus_irregularis_EXX70205 Rhizophagus_irregularis_EXX72075 Rhizophagus_irregularis_EXX72302 Rhizophagus_irregularis_EXX78128 Gigaspora_margarita__GBYF01035394_ Gigaspora_margarita__GBYF01035393 Gigaspora_margarita__GBYF01002907 Gigaspora_margarita__GBYF01077659 Gigaspora_margarita__GBYF01079662_ Jaapia_argillacea_KDQ58145 Hyalangium_KFE71249 Mortierella_verticillata__KFH64473 Mortierella_verticillata__KFH68653 Mortierella_verticillata__KFH68654 Mortierella_verticillata__KFH73872 'Staphylococcus equorum WP_002512299' 'Propionibacterium acnes WP_002523165' 'Actinomyces odontolyticus WP_003795290' 'Streptomyces tsukubaensis WP_006349016' 'Gemella sanguinis WP_006365029' 'Frankia sp. WP_006538975' 'Candidatus Arthromitus WP_007440516' 'Candidatus Arthromitus WP_007445770' 'Caldalkalibacillus thermarum WP_007505056' 'Staphylococcus saprophyticus WP_011303296' 'Cyanobacterium aponinum WP_015220094' 'Desulfocapsa sulfexigens WP_015404907' 'Staphylococcus equorum WP_021338714' 'Mycoplasma sp. WP_022503520' 'Streptomyces sp. WP_024489204' 'Bacillus mannanilyticus WP_025026530' 'Nocardiopsis alkaliphila WP_026117930' 'Streptomyces griseoluteus WP_030215949' 'Bryobacter aggregatus WP_031500605' 'Gemella sanguinis WP_031551991' 'Pediculus humanus corporis XP_002423415' 'Sorghum bicolor XP_002448816' 'Dictyostelium purpureum XP_003287539' 'Dictyostelium fasciculatum XP_004360363' 'Melopsittacus undulatus XP_005152594' 'Melopsittacus undulatus XP_005152595' 'Melopsittacus undulatus XP_005152596' 'Oryza brachyantha XP_006653907' 'Moniliophthora roreri XP_007846368' 'Prunus mume XP_008221867' 'Zea mays XP_008653068' 'Nicotiana tomentosiformis XP_009589903' 'Nicotiana tomentosiformis XP_009609063' 'Dictyostelium discoideum XP_639340' ; END; BEGIN CHARACTERS; TITLE PTK_Analysis_of_DhMRE_proteins; DIMENSIONS NCHAR=321; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX Zea_mays_ACG43022 --------------------DDEETEDLVEAVQKEIGRIESTPVEIDVKLLKFGNKVASGSYGDLYRGTYC------------------SQDVAIKVLDM----QREFAQEVYIMRKVRHKNVVQFIGA-STKPPNLYIVTEFMSGGSVYDYLH----KHK-GVFKLPTLVGVAMDVSKGMSYLHQNNIIHRDLKTANLLD-ENGTVKVADFGVARV--KAQSVMTAET-GTYRWMAPEVIEHKPYDHKADVFSFGILMWELLT-GKIPYEYL-TPLQAAVGVVQGLRPTIPKHTYAMLSELLQKCWQQDPAQRPDFSEI- Candidatus_Arthromitus_AID44552 -----------------------------------------MIGKVIGGRYEIIEKLGEGGMANVYKAKCKIL----------------KRFTTIKILEEF---VRKFKDEAMEVAKLSDNNIVKVYDI-GVEDNLHYIVMEYIDGKTLKEYIS----E--KGVLSIKEALDFSIQICNGLVIAHDIELIHRDIKSQNIL-SNHGNIKVTDFGIAKS--SDSATNSGKILGSAYYISPEQARGNFVDCRSDIYSFGVVMYEMFT-GRLPFTHG-TPVNVALQHIQ-VDPVEPMDLPIGINNLIIKCLQKNPALRYNSKEL- 'Mollicutes sp. DhMRE_0026_SB' FWCQPCAEQE-------WQEGQEVVKKFIEQQK-------ERLAWIPYEEFTNVEYLAEGGFGKVYKAKWKWK-------------D--DRMVALKSLTESQNITLDFLTEIANTKLVGEVGIVRCYGI-SQDTKNYVMVMEYKEGDNHRNYLKNNNSK-----LTLGDKIHGLFSLANALRIIHKQNLIHGDFHSGNILDRGEKSGYITDLGFSRPVSF---REEGKIFGIPPYIAPEVLQGKSYTQASDIYSFGIIAYELLA-NAYPYTE-MDNLDLALRVCKPLRPNID-SIPQLLKDLIKKCWNDNPKERPNSTNL- 'Mollicutes sp. DhMRE_0031_SA' KW--ESLKEILKQNFKNWTSGSYVIDKFIQELQLKANNFQEILEWIYYEKFFNIEYLAEGGFGKVYKAVWADGPIKSWN-IESDSWERENKAVALKTLNDFGN---KFLQEISYHKLFDN-SIINCYGI-SQDTKNYSMVIDYIPDGNLRKYLS--ENR-----LEFEDKLYQLYTIAFGLEAIHGKGLVHHDFHPGNIL---VDECYIIDFGLSRSVDE---RGDDKLYGVLPYVAPEVLMEKQYTKAADIYSFGMVGYELFT-GKPPYDSTRSMTRLSLEICRGLRPQF-K-IPQLLEDLIKHCWDANPAKRPIASEL- 'Mollicutes sp. DhMRE_0091_SA' QWCQSCNAKHFEDEFDTWTS----IDAFIQKCQSEATSNWNVLEWIPYEKFKNIEHIADGGFGKIYKAEWEGGSIEKWI-GKWNNWKGEYKTVALKTLSNSQNLKEDFLQELTLYKMFSVSQMVPCYGI-SRD-GNYIMVMEYMKEGNLREYLK-KNRK-----LGLASKLNFLIQIIQGLKDIHRKHLVHRDFHSGNIIE---DSCRITDLGLSKPVN----TDNNQIYGIMPYVAPEVLQGETYTQKLDIYSLGMVMYEIIT-GIPPFAEQARNTKLALKICRGERPEFPAQYPQLLIDLIKQCWDQEPNNRPSAREV- 'Mollicutes sp. DhMRE_0349_SA' QWCQPCADKE-------W--GQELVEKFIQQQ--------PGIEWIPYEEFTNIEYLAEGGFSKIYTANWGVD-------------E--NRIVVLKSLNNSQNIGWDFLQEIINTKVVSS-GVV-CYGL-SQDTKNYLIINKYMEGGNLRQYLQSENDK-----LSLENKFRRLWFIAMGLNKIHQQNLIHRDFHSGNILNR---SSYITDLGLSRLVSS---NREGQIFGVLPYVAPETLQGEVYTQKSDIYSFGIIAYELFA-NSYPYPD-LNELDLQLKVCQGYRPNMD-KVPQLLKSLIARCWSANPEQRPNAEEI- 'Mollicutes sp. DhMRE_0521_SA' -YRNGIGTKRDIQSANYWFRKNLELKRILDDERFK-------LSWIDYNDFRDIRKIGKGGFATVYYANWFDRINGTWN------------DVALKVIHDSNKNEQEFIQELKNHCEIENPSFLNYFGV-SRNYGDYIIVMEIALKGSLRQNLV-EVSR-----LEWKDKLNLLNCIASDLEAIHSQELVHRDLHSGNIL-Q-DYSAHIADLALAK-VKE------GKICGILPYIAPEILVGQPYAKASDIYSLGVIATEIST-GQRAFDGIPFSDDLTLRIINGFRPECLG--PDCYINLAMKCMDKDFDKRPTATEI- 'Mollicutes sp. DhMRE_0574_SA' QRCHSCFEKE-------WQVGQELVEKFNQQQKKQEINTLSELKWIPYEQFTNIEYLAEGGFSKVYKARWQSKRSEKWN-SEKKNYE--YIEVVLKSLTSSQNITLEFLREIFNIKLVGGNNVVKCHGI-SQD-KNYIIVMKYMYQGNLRQYLTNKTNK-----FSLFNKLWKLTNITSGLDIIHQQNLIHQDFHSGNVLS---NNSSIADLGLSKPANF---PEKSQIFGVLPYIAPEVLQGKPYTQASDIYSFGIVAYELLA-QAYPYPE-LGDVDLALKVCQGYRPEID-KIPRACKDFIRRCWDNDPKKRPNAREV- 'Mollicutes sp. DhMRE_0602_SA' WWCKPCNTKHFKDNFPNWTSGNPEIDEFIRKYQSEVTGWTGVLEWVPYDQFTDIKKIGEGAFGEVYKAKWIDGVIGVWS-TENNTWKRDDNMVVLKVLKKSENITVDFLREITSQKQAGS-YIVKLWGI-SQDTKNYVMVMKYIPDGNLRQHLNANNKD-----LCF--KTLQLYFIAAGLNSVHGQGLMHRDLHSGNILGNKDEFCYIADFGLCRPVNE---ADKSKVYGVMPYVAPEVLQGQPYTQASDVYSFGMIMYEVLT-GLPPFYSEEHGINLALSICWGVRPQFPEKYPQILIDLIKQCWNSDPAKRPSSREL- 'Mollicutes sp. DhMRE_0673_SA' QWCQSCNAKHFEDEFDTWTS----IDAFIQKCQSEATSNWNVLEWIPYEKFKNIEHIADGGFGKIYKAEWEGGSIEKWI-GKWNNWKGEYKTVALKTLSNSQNLKEDFLQELTLYKMFSVSQMVPCYGI-SRD-GNYIMVMEYMKEGNLREYLK-KNRK-----LGLASKLNFLIQIIQGLKDIHRKHLVHRDFHSGNIIE---DSCRITDLGLSKPVN----TDNNQIYGIMPYVAPEVLQGETYTQKLDIYSLGMVMYEIIT-GIPPFAEQARNTKLALKICRGERPEFPAQYPQLLIDLIKQCWDQEPNNRPSAREV- Oryza_sativa_EEC78293 --------------------DTEETDGLLQKLIEAEASSHS---EFDRSLLQIGEKIASGSSGDLYRGTYL------------------GVDVAVKFLSS----KVEFLQEIMILKSVDHENVVQFYGA-CTKHRKYLIVTEYMPGGNLYDFLH----KQN-NTLELPVVLRIAIGISKGMDYLHQNNIIHRDLKTANLLG-SGQVVKIADFGVSRL--RSQGEMTAET-GTYRWMAPEVINHKPYDHKADVFSFAIVLWELVT-TKIPYENL-TPLQAALGVRQGMRMEIPPKVHPRLSKLIERCWDENPHVRPLFSEI- Oryza_sativa_Indica_Group_EEC82761 --------------------DTEETDDLIIKIKEALSHKNSTNQQIDWNLLTTGEKIATGSSADLYRGTYN------------------GLDVAVKILPS----EVEFLQEILILRSVNHENVLQFYGA-CTRPQKYCIVTEYMPGGNLYDFLH----KQN-NVLDLLTILRIAISISKGMNYLHQNNIIHRDLKTANLLG-YHQVVKIADFGVARQ--GNQEQMTAET-GTYRWMAPEIINHKPYDNKADVFSFAIVLWELVT-LKVPYDNM-TPLQAALGVRQGFRLEIPSSVNPRLSKLIQRCWDEDPDVRPVFAEI- Actinomyces_sp_EEZ77319 ----------------------------------------------LGSRYILDERIGKGAQGEVWIGRASSEGSQDTV----------PEVYAFKILPGF---VERFIKERSTLLRVSSPYVIGVHDF-VVEGTTLALVMDYVPGGDLRGYLK----E--SGPLPPAEAAQLGASVAEGLSAVHNAGILHRDVKPANIL-TTPMTPRVVDFGIARI--IDVASHLTGVIGTPLYMSPEVLSGEVPGTQADVYSLGIVLYEVVC-GVTPFVGS-IS-ELLGQHMH-RTPGRPGGVPDRMWGLIASMLVKTPDKRPTATDV- Propionibacterium_acnes_EFT55623 -----------------------------------------STTKRVGSHYVLDDVLGRGSMGTVWRGHDLND----------------GSPCAIKILKGA---TRRFIDERDIFMSVDDDAVVRVTDM-VVESSTFAIVMELVDGPDLAQVLK----SLPDHRLDQGTAVSLGIEVCQALAAIHRVGIRHLDIKPANIL-ENVSGARITDFGVSEA--VAFH--PREVVGTPYYQAPEVAAGWTPTAASDLYSFGVTLYEILA-GHMPFQAN-SAGNLLRN--Q-PPPAIPGVDP-RLWNTILTCLAPDPSQRPSAEVL- Rhizophagus_irregularis_ERZ99038 N----CRAKYFQQNFKNWSSGNNDIDEFIQETQLSNCYANNALEWIPYDRFYDIKYIAKGGFGKVYRANWIDGCIDKLD-NYDQNWIRYNMFVALKSLNNSKNVTLKFMNEITLHYKVDSRCIIKLYGI-TQDTKDYIMVLDYAENGNLRNYLDANYNE-----LNWNNKINYLHSIAHGLKDIHEKELIHRDLHIGNLL-RLKSITCITDMGLCKPADYVSEYTKNSIYGVLSYMAPEILRGQSYTKAADIYSFGMIMYEVIS-GLPPYHNMSHDNNLAIKICQGFRPRF-N-VPQLIVQLIKRCLDANPLNRPNAEKL- Rhizophagus_irregularis_ESA23675 GWCRTCNAEHFRQNFKNWTSGNKDIDKFIQDAQLLAGEDFEVLEWIPYEKFYDVKFIAKGGFGEVYKAKWTDGLIKKWD-DKKRDWERLNDFVALKALSDSKDVSLEFIREITFHRDLGS--IIKLYGI-TQDTKNYMMVLEYAENGGLRNYLD--HNK-----LNWEKKIRNIHYIALGLVEIHQKGLIHRDLHIGNIL-MNDTNTCITDMGLCRPAGA---SDKTAIYGVLPYIAPEVLRGKNYTEASDIYSFGIIMYEIIS-GLRPYNDVGHDENLTISICQGLRPTF-N-VPQLIKYLIDECLNANPSDRPTAEEL- Reticulomyxa_filosa_ETO06916 ---------------------NLSPLDYAKTVRMANALVDKIPSDITSNELLFDVEIGRGAYGTVYKARWC------------------GHEVACKKFVK----AMQFLKELQTTEAFIHPNIIRYYGF-CQTP--FCLVMEYMEGGSVQEYLR----HDKPQSIQISPLQRIMIQAALGINHLHKHNIVHRDIAARNLLDNKDFRVVVSDFCMSRI--LHEESATYTTVGPLKWMAPEALNEQKFTTKSDVYSFGITLWELLT-GQEPYADV-DPVNTAVEVLVKKRPKLYGTIHSKLQKLMKHCWDEDPAARPDFPEI- Candidatus_Entotheonella_sp_ETX03748 VKDLANKTATSIIKRFGRKVEGMTITARPVTPAPRTNAESLEPGMMLADRYRIIRRVGEGGFSTVLLVEDTMV----------------HEDVILKILDEM---IKRFIQELRYARKVTHENIIRIHDI-IPLGRSYAISMEYFPSHTLADELQ----G--EKPINIKRGIKIIFDVCRGISVAHQLNIVHRDLKPLNIL-DDQSMVKVVDFGVAAVTNHSGTTRVGTLLGTPAYVAPEQVRSRAIDARTDIYSLGVVMYEVFT-GRPPYTGD-D-MSILFQHVE-GNLTPPIDIPPTLDAIIRKAMSVDPDKRFNVDEL- Rhizophagus_irregularis_EXX50138 KWCQQCNSKRFQQDFLKWTSKNKFVDEFIKEAQLNAKNCYEVLEWIPYNKLSSINYHDKGGFSEINKAIWSDGPIDSWD-FDKQQWNRWGYEVILKILNNSSSLNSKFLDEWKYHYNCKSSKFIQFFGI-TQDNLNYIIVMSYAKKGNIRKCLP-NIIK-----FKWQDRLQLLKNIILGLKVIHESSLTHGDFHDGNIL-VSDDEIFIIDLGLCKPINDLQNKIDNEIYGVLPYMAPEIIRKEPYTPASDIYSFSMIMWEFTS-GIPPFDHEAHDLELSLSICEGERPKINK-TPQCYVDLMTKCWDSNPSNRPTITEI- Rhizophagus_irregularis_EXX52070 -WCQQCSAKRFQQDFSKWTSKNEFVDKFIQEAQLNAKNSYEFLEWIPYNKLSGINYYDKGGFSEIHKAIWLDGPIYSWN-FNKQQWNRCGYEVILKTLNSSSNLDSKFLDEWKYYYNCKSSKFIQFFGF-TQDNLNYIIIMSYAKKGSLRKCLS-DIIK-----FKWQDKLQLLKKIILGLKVIHESKLTHGDFHDGNIL-MSDDELFIIDLGLCKPISDLQDNKVNEIYGVLPYMAPEILRKKPYTPASDIYSFSIIMWEFSS-GIPPFNHEPHDLQLSLSICEGKRPEIIK-TPKCYIDLMKKCWDSDPSNRPTIIML- Rhizophagus_irregularis_EXX52799 KWCQQCNTRRFQQDFSKWTSKNEFIDKFIQEAQLNAKNSYEILEWIPYNKLSSIDYYDKGGFGEIHKAIWLDGPIYSWN-FKKQQWNR-DYEVILKILNNSSSLNSKFLDEWKYHYDCKSSKFIQFFGI-TQDNLNYIIVMSYAKKGSLRKCLS-DIIK-----FKWQDKLQLLKTIILGLKVIHESNLTHGDFHDGNVL-MSDNELFIIDLGLCKPIS---DNKVDEIYGVLPYMAPEILRNKPYTPASDIYSLSMIMWEFTS-GTPPFYHEAHDHRLSLDICRGKRPEIIK-TPKCYIDLMKKCWDSNPSNRPTIRMI- Rhizophagus_irregularis_EXX53579 NWCKACNAKRFQQNFENWTSNNNDIDKFIQDTQSSATKRSEVLEWIPYNKFYDIQYIAKGGFGKVYRAKWIDGYIFKWD-NENQNWSRYNMFVALKSLNNSENVKLEFINEIKLHNKIE-TFVVIAYGI-TQDTKNYIMVLEYAENGSLRNYLIKSYSE-----LNWENKLQYLANIASGLLKIHKNELTHRDLHIGNVL--ISDIAIITDMGLCKPADYESESAKNKIYGVLPYIAPEILRGQNYTKASDIYSFGIVMYEVIS-GLPPYHDVSHDINLSIKICQGLRPRF-N-VPQLIVHLIKRCLDANPLNRPTANEL- Rhizophagus_irregularis_EXX53679 GWCKECNAKHFQQNFKNWTSGNNDIDKFIQDTQLSATDYEKVLEWIPYNKLYDIEYIAKGGFGKVYRAKWIDGYIESWD-NINKNWKRYNEFVALKSLNNSENVTSEFINEITMHCKTYQS-VIRVYGI-TQDTKNYMMVLPYAEDGSLRAYLDKNYHE-----LSWDTKLEYLWHITLGLESIHEEELIHRDLHIGNIL-SFKSEVTVTDMGLCKPADYVSENPKNSIYGVLPYIAPEVLRGQNYTKAADIYSFGIIMYEVIS-GLPPYHDVSHDKNLAIKICQGLRSRFSN-VPQLIVNLVKRCLDANPINRPEAVEL- Rhizophagus_irregularis_EXX57010 KWCQSCNSKHFQEDFKNWTSGNHEVDKFIQSLQIKSNDCSEVLEWIEYDKLEKVEYLAKGGFGITYKAIWKDGYILDWN-LENNQWERSNYPVVLKCLHNSQDITAEFLREIESHIKIIF--VIRCHGI-TKDSNNFMMVMEYAENGNLRQHLNNSFNS-----MKWREKLDILRRIANGLYDIHNQGLIHHDFHCGNILNHNNNYTYITDLGLCRSTNISSQDEYKKVYGVLPYVAPEVLRGKEYTQESDIYGFGIIAYEVCT-GLSPYHDIAHEVSLAINICRGLRPKS-N-IPQVILNIIKQCWDADPLKRPKANKL- Rhizophagus_irregularis_EXX57629 RWCKSCNAKHFQQNFKNWTSGNNEVDKFIQKTQLKAKEYMENLEWIEYDRFENVEYLAEGGFGIIYKAIWKDGYIKRWD-SENNRWERSNFPIILKCLHNSQDITSEFFREIESHITI-G-CVTKCFGI-TRDSNNFMMVIEYAKDGSLRQYLNNRFNS-----IKWVDKLGYLVDISRGLNSIHEKGLIHHDFHCGNMLRD-GNYTIITDLGLCQPANVSSQKNEKQVYGVLPYVASEVLRGGEYTQESDIYAFGIIAYEVCT-GLPPYHDIAHDKFLAISICQGLRPKS-N-IPQLILDIIKQCWDADPLKRPKAREV- Rhizophagus_irregularis_EXX59664 D-LKKCKVKHFQQNFKNWTSGNDNIDKFIQNNQLLAHAFYEVLEWIPYDRFCNIKYIAKGGFGKVYQANWIDGNIIAWD-DKIQNWKRYSKVVALKSLDNSKNVSLEFMNEITLHNKVNNANIIGLYGI-TQDTKNYMMVLDYAKNGSLRNYLDERHNK-----LSWNDKFYYLFDIARGLQYIHGNKLIHRDLHAGNIL--HDGIIYITDMGLCKPADYISENTKNRVYGVLPYIAPEILQGQNYTKAADIYSFGIIMYELIV-GLPPYHDVCHDENLAIKICQGLRPRF-N-VPQIIVHLIKRCLDANPLNRPMAGEL- Rhizophagus_irregularis_EXX60083 KWCKPCNSKHFQQNFKNWTSGNNEIDKLIQKTQLNAKAVTEILEWIEYDRFENIEYLARGGFGTIYKAIWKDGYIRCWN-SEDNQWKRSNFPVVLKCLNNSQDITSELLKEIESYTVI-Y-PVARCFGI-TKDSNNFMMVMQYAKDGSLRQYLNDRFNS-----IMWKDKLDTLERIAKGLYSIHKNGLVHRDFHCGNMLKD-SEYTYITDLGLCRPANVSFQDECKQVYGVLPYVAPEVLRGKEYTQESDIYAFGIIAYEVCT-GLPPYHDIAHDKILAISICQGLRPKS-N-IPQLILDIIKQCWDADPLKRPKAEEL- Rhizophagus_irregularis_EXX62203 KWCKSCNSKHLQQNFKNWTSGNNKVDKFIQKTQLEGKSYRNILEWIEYDRFENVEYLAKGGFGTIYKAIWKDGYMEMWD-SGNNKWMRSNFPVALKCLHNSQDITAEFLREIELHIVT-FVYVNRCYGI-TKDSNNFMMVMEYAKNGSLRQILDNSFNS-----MYWNGKLDILQRIANGLKDIHSQGLIHHDFHCGNILNGVDNYTFITDLGLCRPANVPSQDEYKKMFGVLPYVAPEVLIGKEYTQESDIYGFGIIAYEVCT-GLPPYHDIAHDKILAISICNGLRPKS-N-IPQLILDIIKQCWDADPLKRPKANEL- Rhizophagus_irregularis_EXX62449 KWCQTCNSKRFQQNFNNWTSGNDDLDKFIQTNQLSAKNEQQLLEWIPYDRFHAVKYIAEGGFGKVYEASWKD---------------------ALKVLNNSKNLTLEFINEITLHIKIDKDQVVRCHGI-SQETKNYIMVMKYAKKGNLRKYLNRSHNN---GLLNFNKRFLKLNYIAIGLKRIHEKGLIHRDLHTGNIV-CFDEKISITDMGLCKPVNYELENMENKVYGVLPYLAPEIMRGQKYTQASDIYSFGIIMYEVIS-ELTPYYDTAHDECLALSICEGLRPRF-N-VPKLILDLIKRCLDADPSNRPNALDI- Rhizophagus_irregularis_EXX62915 EWCIECNSKHFQQNFKNWTSNNDDINKLIQETQLLSINHYRVLEWIPYNKFYDIEYIAKGGFGKVYKAKWIDGYIHHWDTNENQNWKRFNEFVALKSLNNSENVTLEFINEITMHCKADSSFIVRVHGI-TQDTKNYMMVLQYAEKGSLRNYLNKYYSK-----LDWKTKLFYLWNIAYGLETIHERELIHRDLHIGNVL-KFPYYSSITDMGLCKPADYSSENSKNRIYGVLPYIAPEILRGQNYTKAADIYSFGIIMYEVIS-GLFPYYDLSHDENLAIKICQGLRPRFNN-VPQLIVHLIKRCLDANPLNRPKEREL- Rhizophagus_irregularis_EXX64131 KWCKSCNVKHFQQNFNNWTSGNNEVDKFIQKTQLRAKRYEEILEWIEYDRFENVEYLAKGGFGTIYKAIWKDGYIEEWD-SENNQWERKNFPVVLKCLHNSQNVTSEFLREIESHTMI-D-GVTRCFGI-TKDSNNFMMVIEYAEEGSLRQYLNNTFNS-----IKWVDKLNILQRIAAGLLSIHEKELIHRDFHCGNMLKD-NDYTIITDLGLCQPANVPSQEYEKQVYGVLPYVAPEVLRGKEYTQESDIYAFGIITYEVCT-GLPPYHDIAHDKILAISICQGLRPKS-D-IPQLILNIIKQCWDADPSKRPKANEL- Rhizophagus_irregularis_EXX68008 NWCQSCNSKRFQQNFHNWTSGNDVIDKFIQNTQLSAKNHHQILEWMPYNMFKNPKYIAEGGFGKVYRASWNSGYILHWD-TRCHQWKRRGVFVAFKSLNNSQNVSLEFINEVTIYLKVYKDQIIKCHGI-SQDTKDYIMVMNFAKRGNLRNSLNKKYSKLDLSLWTWRHKIFILKHISYGIGRIHGKDLIHRDLHVGNIVNNYDLSPRITDMGLCKPANYESENAKNVIYGVLAYLAPEILRGQNYTKASDIYSFGIIMYEVIS-GLPPYYDNAHNELLALNICEGSRPEF-N-IPQLVLHIIKSCLDANPSNRPCAKNF- Rhizophagus_irregularis_EXX68629 NWCQQCNTKRFQQDFSKWTSKNEFIDEFIQEGQLNAKNSYEILEWIPYNKLKSINYYDKGGFSEIHKAIWLDGPIYSWN-FYKKQWNRCGYEVILKILNNSSSLNSKFLDEWKYHYNCKSSKFIQFFGF-TQDNLNYIIVMSYAKKGSLRKCLS-DIIK-----FKWQDKLQLLKKIILGLKVIHESNLIHGDLHDGNIL-MSDNELFIIDLGLCKPISDLQDNKINEIYGVLPYMAPEILRLKPYTPASDIYSFSLIMWEFTS-GIPPFKHEVHDQYLSLSICKGKRPEIIK-TPKCYVNLMKKCWDSNSSNRPTIIMI- Rhizophagus_irregularis_EXX68646 KYCQPCNSKRFQQNFKNWTSGNHDVDEFIQKAQLKAEKFQCVIEWIEYDKFEDVEYLAKGGFGTTFKAVWKDGYIDYWD-YDNNKWKRIKTKVALKCLHNSQDITTDFLKEIESNIIVFSGHVVRCFGI-TKDTNNFIMVME-LINGSLRQHLNYNFIS-----LSWDKKLGYLFGIACGLSDIHNKGLIHHDFHCGNILDDFVTFAYITDLGLCQPANVSSQNT------------PEVLRGKEYTQASDIYGFGIIAYEICT-GFPPYYDIAHDEFLAMKICKGLRPRS-N-IPQLIFDLINQCWDADPLKRPKANKL- Rhizophagus_irregularis_EXX70205 KWCQSCFSNYFQQNFKNWTSGNHDVDEFIQKAQLKTKWYRQIIEWTEYDKFDDVEYLAKGGFGTTFKAVWKDGPIWGWD-YYNNQWKRDEAKVALKCLHNSQDITADFLKEVESNILA-ENYIVRCFGI-TKDTNDFMMVMD-LKNGNLRQHLNNNFIS-----MDWKQKLWSLQGIADGLKNIHKKGFIHHDFHCGNIVSDFGSSAFITDLGLCQPANVLSQNSNKKTYGVLPYVAPEVLRGNEYTHKSDIYGFGIIAYEICT-SFPPYYDIAHDEFLAMKICNGLRPKS-N-IPQLILDIINQCWDANPLKRPNADEF- Rhizophagus_irregularis_EXX72075 KWCKSCNAKHFQQNFKNWTSGNDEVDKLIQKTQLKAEIQNEILEWIEYDRFEDVEYLAKGGFGTIYKAIWKDGYIEKWD-SKNNQWERSNFPVALKCLHNSQDITSEFLREIESHTKI---YVTRCYGI-TRDSNNFMMVIEYAKDGSLRQYLNNSFNS-----IKWVDKLNILQNIANGLKSIHEKGLIHHDFHCGNMLKD-DNWTFITDLGLCQPANISSQEYEKKIYGVLPYVAPEVLRGGEYIQESDIYAFGIIAYEVCT-GLPPYHDIAHDKILAISICRGHRPKS-N-IPQLILDIIKQCWDADPLKRPKAREL- Rhizophagus_irregularis_EXX72302 KWCQQCNTRQFQRDFSKWTSKNEFIDKFIQEAQLNAKNSYEILEWIPYNKLSSIDFYDKGGFGEIHKAIWLDGPIYSWD-FDKQQWYR-EYEVILKTLNNSSNLNSIFLDEWKYHYNCKSSKFIQFFGI-TQDNLNYIIVMSYAKKGSLRKCLS-DITK-----FKWQDKLQLLKTIILGLKVIHESNLTHGDFHDGNIL-MSDNELFIIDLGLCKPIS---DNKVNEIYGVLPYMAPEILRNKPYTPASDIYSFSMIMWEFTS-GVPPFNNEPHDLELVLDICQEKRPEIIK-TPKCYINLMKQCWDSNPSNRPTIEIV- Rhizophagus_irregularis_EXX78128 KWCNTCYAKNFQQNFKNWTSGNHEVDKFIQKAQLSAKKYDEVLEWIEYDRFENVEYLTKGGFGTIYKAIWKDGYIRSWD-SENNKWDRNDFPVVLKCLHNSKDITSDFLKEIEMHNAFEYDNITWCYGV-TKDSGNFMIVMAYAKDGSLRQHLNKSFNS-----TKWDEKLRILQNIAEGLNYIHQKELIHRDFHCGNILIE-DKYAFITDLGLCRPANVSSQNECKELYGVLPYVAPEVLRGKEYTQESDIYGFGIIAYEVCT-GLPPYHDIDHDKFLSISICQGLRPKS-N-IPQLILNIIKQCWDADPLKRPKANEL- Gigaspora_margarita__GBYF01035394_ DSDYLNDPDYLEENF--LMSGNPKIDKFIRNDGK--------LKWIPYGQLTNIEYIACGGFGVVSKAKWK------------------SRKVVLKSLNNSKDVTTDILREIAYHQQFYNIYVVQCYGI-SRDTGNCLMVMHYFEGGNLRQNLDSNYGQ-----LSLNDKRGLLYSMTNGLYHIHTRGLIHKDFHPGNIKTKELGSCFITDFGLCKPIDE---NDSKNICGVLPYVAPEVLRGKPYKQASDIYSLGIVAYELLS-GLPPYYNIPHDISLTIEICNGLRPNL-DVVPQLLKALIIKCWDDNPTLRPEAEEF- Gigaspora_margarita__GBYF01035393 ------------------MSGNPRIDEFIRNDNR--------LKWIPYEQLTNIEYIACGGFGVVSKAKWE------------------SRKVVLKSLNNSKDVTTDILREIAYHQQFYNIYVVQCYGI-SRDTGNCLMVMHYFEGGNLRQNLDSNYGQ-----LSLNDKRGLLYSMTNGLYHIHTRGLIHKDFHPGNIKTKELGSCFITDFGLCKPIDE---NDSKNICGVLPYVAPEVLRGKPYKQASDIYSLGIVAYELLS-GLPPYYNIPHDISLTIEICNGLRPNL-DVVPQLLKALIIKCWDDNPTLRPEAEEF- Gigaspora_margarita__GBYF01002907 MWCMSCNANHFQELFDKWTSGNNTIDRFVQNSQLSATNSWEVLEWVPYERFFNVKYLGKGGYGIVYSANWDDGCIKRWD-DETKQWSRFYQDVVLKSLRNSRNLVEDFLEEINAQRKLNT-YIIPCYGI-TKDTDDFMIVMKYASDGSLRQYLNKNLKN-----LKWGPKLNIIRTAAEGLYNIHKSHLTHKNLHSGNIV--IDNCSYITDFGIYKPDDYSQEKSNIQVFGVLPYVAPEVLYGDTYTQAADIYSFGILMNEVAS-ELPPYYNIPHNNNLALQISQGYRPEIKE-TPQLISDLIKRCWDARPELRPTANEF- Gigaspora_margarita__GBYF01077659 -YRNGIGTKRDIQSANYWFRKNPELKRILDDEKFK-------LSWIDYNEFRDIREEGKGGFATVYGARWFDRINNTWW------------AVALKVIHNSNENEQEFIQELKNYCEIKSPSFLNCHGV-SRNHGDYIIVMEIAPKGSLRQNLV-EVSQ-----LEWKDKLNILNGIVIDLESIHLQELVHRDLHSGNIL-QRDQHACITDLGLSKGEKE------GKICGILPYIAPEVLVGQPYTKTSDIYSLGVIATEIST-GQRAFDGIPFDDYLVSRTIGGSRPKCLG--PDCYIKLAMKCMDKDFDKRPTATEI- Gigaspora_margarita__GBYF01079662_ QWCNPCNTKQLRSEFKNWTSGNEMIDNFIQKKQLEAYMNNDIIEWIPYEKLKHIKYLAKGGFGIIYQAIWVDGHIVKWY-SKNNKWKRDNIMVCLKKLNNSNGALKEFLQEVENQLKFLA---APIYGI-TKDT--YMMVMKYAPYGSLRDMLNNKYHN-----LSWKDKLANLYNISLSLKDIHSTGFVHKDFHAGNIV--MNDLSKITDFGLCKPISLNSTHGSKHKYGVTPYVSPEVLRENAYTRESEIYSFGIIMSEILT-SYPPYHDLPHNNDLVLDICKGLRPKI-R-IPQLLQNLMERCWDAIPSKRPTADEM- Jaapia_argillacea_KDQ58145 ---------------------------------------T-YSASVIPELLDKSECYANGEFSDVYKCRWTGSM---------------AHAVAVKVIKHLSTLVHR-------WRGLPHPNVLECLGL--------CLVLPFCSHGNIGQYVR----K-----FP--NADRIDLQVTRGIKHLHDKEIVHGDIRAANIL-DDENIPRLADFGL-------SQSRSDFTGGPCRWMSPEILLSEDETNASDVYAFGMAVLEIYS-TGPPFSNIRHDSVVIFSVISGNRPKRPQGMPDGIWDMLEICWKANPRERPTM---- Hyalangium_KFE71249 ----------------------------------------AQAGEVLGN-YQLERLLGEGSMGQVFQARHVRL----------------GRQVALKVLISF---VRRFFQEARSVNQINHEHIVEIFDF-VEDRGHVYCVMELLRGQSLAEVM-----K--EQPLTLERIQRIGVQVCAALGAAHRLGVVHRDVKPDNLF-GQKDFVKVLDFGVAKILTSEGTTLDGTIIGTPTYMAPEQAAGLPVDQRADIYAVGNLLYEMLA-GRPPFQAP-AFGQLVVQIIT-QAPPPLPEMPRALAELVLRCLAKEPEARPSLEEV- Mortierella_verticillata__KFH64473 ----------------------------------MSEHTAWLDGAIHGNLLRLIDFVASGGFGIIHSGHWR------------------GMRVAVKVL---------FIQEVSI-HKMDSENIVKFYGI-TRMSGDYGMVLQFAGRGSLRDYL-----SQHFHRLDWGQKMRLARDVAAGVSFIHEDNICHHDLHSRNVL-DMSGRALITDFGLSRY------VNNANSRGVVPYISPERLKNSPFDHSSDVYSLGVIMWELTS-GHPPFNRDGDNFLLPFEIMRRREEIVPG-TPVEYSDLYQKCWDGEPVRRPHLPVV- Mortierella_verticillata__KFH68653 QPSDATSFTPRNRHRSASGSPPLPVSQEPPGSTEIETVETRVYRQIKYRDISNVQPLKRGGFGEIHTAEWS------------------RLKVVLKRGVEHAEGVEQFEQELEI---LVHDFIVTFYGV-TEDTKVKCMVMKHCTNGNLCSFLE-----KNHTNLTWAERYRLSIEIAKGLEFLHKSGFHHRDLHSGNIL---DDTAMICDFGLSRSSNK-SQDLTAAV-GVASFLAPERIKRPVYTASCDVYSLGVVFWHISS-GRIPFAKRLREPALLKELMEGHREDIVPGTPKEYRDMLVKCWDAKPSRRLVVIAL- Mortierella_verticillata__KFH68654 QPSDATSFTPRNRHRSASGSPPLPVSQEPPGSTEIETVETRVYRQIKYRDISNVQPLKRGGFGEIHTAEWS------------------RLKVVLKRGVEHAEGVEQFEQELEI---LVHDFIVTFYGV-TEDTKVKCMVMKHCTNGNLCSFLE-----KNHTNLTWAERYRLSIEIAKGLEFLHKSGFHHRDLHSGNIL---DDTAMICDFGLSRSSNK-SQDLTAAV-GVASFLAPERIKRPVYTASCDVYSLGVVFWHISS-GRIPFAKRLREPALLKELMEGHREDIVPGTPKEYRDMLVKCWDAKPSRRLVVIAL- Mortierella_verticillata__KFH73872 E-------------LELSGEPGLELQDEP----VIETKETTIARQIDFQDISNIQPLKKGGYGEIHTAEWS------------------RLKVVLKRAPEHSEGVEQFEQELEI---LTHDYIVTFYGI-TQDTNANCMVMKHCTNGNLVSFLE-----KNHSNLTWSERYRLSIEVAKGLEFLHKSGFHHRDLHSGNIL---DDTAMICDFGLSRSSNK-TRDLAAAV-GVASFLAPERLQRPVYTAACDVYSLGVVFFHISS-GKVPFGKRLHDPMLLRELIDGTRETIVPGTPKDYAELIVECWDKVPSKRPVVIAL- 'Staphylococcus equorum WP_002512299' -----------------------------------------MIGKLINERYEVIKKLGGGGMSTVYLAEDSIL----------------NRQVAIKAIEET---IKRFEREVHNLTQLSHDNIVSVFDV-TENEENFFLVMEYIKGPTLSEYIQ----E--NRPLDIETVLNFTRQIIDGIKHAHDTKIVHRDIKPQNIL-EKDKTLKILDFGIAKA--LSETTETNHVLGTVQYLSPEQARGKSTDNGTDIYSIGVVLYEMLV-GKPPFSGE-TAVSIAIKHIQ-DPM---PNVPQAISNVVLKATEKDRSERYTVKDM- 'Propionibacterium acnes WP_002523165' -----------------------------------------STTKRVGSHYVLDDVLGRGSMGTVWRGHDLDD----------------GSPCAIKILKGA---TRRFIDERDIFMSVDDDAVVRVTDM-VVESSTFAIVMELVDGPDLAQVLK----SLPDHRLDQGTAVSLGIEVCQALAAIHRVGIRHLDIKPANIL-ENVSGARITDFGVSEV--VAFH--PREVVGTPYYQAPEVAAGWTPTAASDLYSFGVTLYEILA-GHMPFQAN-SAGNLLRN--Q-PPPAIPGVDP-RLWNTILTCLAPDPSQRPSAEVL- 'Actinomyces odontolyticus WP_003795290' ----------------------------------------PLIGLLVDERYRVTRRLARGGMATVYIAQDERL----------------DRPVALKVMEDF---VARFRREARSAARIVHPGVVSVFDQGVVTGQGF-LVMELIDGTNLRQLLR----A--QGAFTIPQALRYTTDILEALRAAHRVGVIHRDVKPENILP-----AKVTDFGLARA--ASEVSSTGNMLGTVAYIAPEIATTAQADARSDIYSVGIMLYEMLT-GSVPWADE-SPLQIATHHVS-DDVPSPSKIPREIDDLVAALTARDPASRPDASDV- 'Streptomyces tsukubaensis WP_006349016' ----------------------------------------------VGSKYLLEQPLGRGATGTVWRARQRETAGAEAA----------GETVAIKVLADV---VMRFLRERSVLLRLTHPNIVRTRDL-VVEGDLLALVMDLIDGPDLHRQLR----E--NGPFTPVAAALLTAQIADALASSHADGVVHRDLKPANVLRGHLH-PMLTDFGIARL--ADSPTRTHEFVGTPAYVAPESAEGRPQTSAVDIYGAGILLYELVT-GRPPFAGG-TALEVLHRHLS-EEPRRPSTVPEPLWTVIERCLSKEPGRRPSAENL- 'Gemella sanguinis WP_006365029' -----------------------------------------MIDKMICNRYKIIDHLGTGGMATVWLGYDTIL----------------DRNVAIKTFEDA---VKRFNREAKAVTSLSHPNIVSIYDV-ENEGDFYYLILEYVEGMTLKDYMM----K--NPKMPIETIVHISKQIADGLCHAHQNGIIHRDIKPQNIL-NENLTCKITDFGIARA--YGDTTQTNQMLGTVYYLSPEQARGNVATAQSDIYSLGILIFEMIT-GQIPFKGE-SAVAIALKHLQ-EEL---PDVPQSVKNIVLKATMKNPNERYSSKEL- 'Frankia sp. WP_006538975' GTAVVDVVRQAMSPQARQRPGQLETRPPTAPLPVAPAPGAGEGGRELGSRYLLDTPIGRGATGQVWRARRRDT----------------GSAVAVKVLPET---VTRFVRERHAMPKVRHPNVVRVLDL-VIEGETLAIVMELVDGPDL-RGMI----T--AGRLPRDEARRLLAQVAEGLAAVHEAGIVHRDVKPENVL-GATAVARLTDFGLARV--AGDSTRSSRLMGTMAYLAPELAAARPPTPAVDVYSFGVLAYELFA-GRRPFDAD-NEAALMLAHLQ-QRPERPADLPGPLWRAVERCLRKDPEERPSAAEL- 'Candidatus Arthromitus WP_007440516' -----------------------------------------MIGKVIGGRYEIIEKLGEGGMANVYKAKCKIL----------------KRFTTIKILEEF---VRKFKDEAMEVAKLSDNNIVKVYDI-GVEDNLHYIVMEYIDGKTLKEYIS----E--RGVLSIKEALDFSIQICNGLVIAHDIELIHRDIKSQNIL-SNHGNIKVTDFGIAKS--SDSATNSGKILGSAYYISPEQARGNFVDCRSDIYSFGVVMYEMFT-GRLPFTHG-TPVNVALQHIQ-VDPVEPMDLPIGINNLIIKCLQKNPALRYNSKEL- 'Candidatus Arthromitus WP_007445770' -----------------------------------------MIGKVIGGRYEIIEKLGEGGMANVYKAKCKIL----------------KRFTTIKILEEF---VRKFKDEAMEVAKLSDNNIVKVYDI-GVEDNLHYIVMEYIDGKTLKEYIS----E--RGVLSIKEALDFSIQICNGLVIAHDIELIHRDIKSQNIL-SNHGNIKVTDFGIAKS--SDSATNSGKILGSAYYISPEQARGNFVDCRSDIYSFGVVMYEMFT-GRLPFTHG-TPVNVALQHIQ-VDPVEPMDLPIGINNLIIKCLQKNPALRYNSKEL- 'Caldalkalibacillus thermarum WP_007505056' -----------------------------------------MIGKKLVGRYELMERVGGGGMAVVYKARDRLL----------------NRIVAVKILHDF---VDRFRREAQAAASLSHPNIVNIYDV-GIDEGIHFIVMEYIDGPTLKEYIA----Q--KGRLPVEEAIHITRQIAEALDHAHQNNIIHRDIKPHNIL-GPHKHIKVTDFGIARA--ATSSTHTGSVIGSVHYFSPEQARGGVAGQKSDIYSLGIVLYEMVT-GELPFSGD-SPISVALKHLQ-EPFTEPRQIPQSVENIILRCLAKNPSQRYSADGL- 'Staphylococcus saprophyticus WP_011303296' -----------------------------------------MIGKIISERYEVIKKLGGGGMSTVYLAEDTIL----------------NRKVAIKAIEET---IKRFEREVHNLTQLSHKNIVNVFDV-TEDDDNFYLVMEYIEGPTLSEYIQ----K--NQPLDTTTALNFTNQIINGIKHAHDTKIVHRDIKPQNIL-DKHQTLKILDFGIAKA--LSETTQTNHVLGTVQYLSPEQARGESTDNGTDIYSIGVVLYEMLI-GKPPFSGE-TAVSIAIKHIQ-DPM---PNVPQALSNVVLKATEKDKTVRYSVRDM- 'Cyanobacterium aponinum WP_015220094' ----------------------------------------CEIKSVQNSHYRIVGLAGEGQFGKVYAAIHRQT----------------GELVALKELNPFKFSTKKFLREIRILLSLDHPNIIRCYGVEHYQ-DKRYLVTEYCDGGTLRDLLA----A-NNNRVNIEYKLKIIIDILEGLSHAHKEGIIHRDLKPENIL-SQGWKAKISDFGIAKIEVEDAIISNMGDTGSPAYMAPEQFYGK-YSYGSDIYSVGIILYELIT-GVRPFSG--TPSEIMFAHLN-RQPKFPKNLSPNLRLILREALQKLPQHRFTASEM- 'Desulfocapsa sulfexigens WP_015404907' ---------------------------------------------MKYGRYEIVSELGRGAMGKVYQAHDPQI----------------NRMVALKVLEDY---VQRFLKEATAIGRLSHPGIVTVYDI-GQDHGTIYIAMEFLEGQSMDQLV-----K--AGNLSLTDIVDIGIQIAQALHYAHTRGIIHRDIKPPNII-TPENILKVTDFGIAHIDDPDGQTRAGEILGTPVYMAPEQVMGQTVDGRSDLYSLGVILYELTT-GHRPFKGE-NLTAVFRAITQ-DDPVPPDQIPPALSKLILKAMARKPEDRFSGQEM- 'Staphylococcus equorum WP_021338714' -----------------------------------------MIGKLINERYEVIKKLGGGGMSTVYLAEDSIL----------------NRQVAIKAIEET---IKRFEREVHNLTQLSHDNIVSVFDV-TENEENFFLVMEYIKGPTLSEYIQ----E--NHPLDIETVLNFTRQIIDGIKHAHDTKIVHRDIKPQNIL-EKDKTLKILDFGIAKA--LSETTETNHVLGTVQYLSPEQARGKSTDNGTDIYSIGVVLYEMLV-GKPPFSGE-TAVSIAIKHIQ-DPM---PNVPQAISNVVLKATEKDRSERYTVKDM- 'Mycoplasma sp. WP_022503520' ----------------------------------------IMKGQKISDRYQIIKSIGEGGMANVYLAYDTIL----------------DRNVAVKVLEKF---VRRFQREALAASSLSHPNIVEVYDV-GEDNGEYYIVMEYIEGKHLKNLLK----K--RGKLTLSEAVDIMLQITDGMASAHDSYIIHRDIKPQNIM-LENGLVKITDFGIAMA--MNATTQTNSVMGSVHYLPPEQASGQGSTLQSDIYSMGIVMYELIT-GELPFKGD-NAVEIALKHLK-EPI---PDVPNSIVNIIKRSTAKNPKNRYDAREM- 'Streptomyces sp. WP_024489204' ----------------------------------------------VGSKYLLEEPLGRGATGTVWRARQREAAGAEAA----------GELVAIKVLADV---VMRFLRERSVLLRLTHENIVRTRDL-VVEGDLLALVMDLVDGPDLHHYLR----D--NGPLSPVAASLLTAQIADALAASHADGVVHRDLKPANVL-GQMH-PMLTDFGIARL--ADSPTRTHEFVGTPAYVAPESAEGRPQTSAVDIYGAGILLYELLT-GRPPFAGG-TALEVLQRHLS-EEPRRPSTVPAPLWTVIERCLSKDPDRRPSAENL- 'Bacillus mannanilyticus WP_025026530' -----------------------------------------MIGKKLGGRYEILDRVGGGGMAVVYKAKDNLL----------------DRIIAVKILDDF---VHRFRREAQAAASLSHPNIVSIYDV-GVEEDTHYIIMEYVEGNTLKEYIN----E--NAPLATDEAIKIAKQIAEALEHAHFNQIIHRDIKPHNIL-GQNKRVKVTDFGIARA--VTSATHTGSVIGSVHYFSPEQARGGMTGEKSDIYSLGIVLYEMLT-GELPFSGE-SPISVALKHLQ-ESYTEPRAIPQSVENIILRCLAKDPTQRYSAKVL- 'Nocardiopsis alkaliphila WP_026117930' --------------------------------------------------HRLLSRLGAGAMGQVYLARTAQ-----------------GRLAAVKAVTDF---LIRFAREVRTAQRVRGPFTPAVLGA-DPDAPVPWMATEYVPGPTLSEAVR----A--NGPFPEATLRVLALGLAQALQAVHAAGLMHRDLKPGNIL--SPRGPQVIDFGIARA--VEGTTKTGQSFGTPSYTSPEQVLGQATSPASDVFSLAGVVVFAAT-GTPAFGRG-RAAEVLTRVVS-LEPDLGG-VPQSLRPLLTRCLAKDPAARPTADEI- 'Streptomyces griseoluteus WP_030215949' --------------------------------------------------YRIIRELGAGGMGRVHLAASRS-----------------GRAVAVKVVPDF---RRRFRAEVDAARAVSGAFTAPVVDA-DPEAPQPWLATAYIPGPSLSEALA----A--HGPMPEATLRVLGGGLAEALAAIHRAGLVHRDLKPSNIL--TLDGPRVIDFGISRA--VDGTTAEGQVAGSPGFMSPEQSQGAPLTGASDVFAFGAVLAFAAT-GIPPFGTG-AAHALLYRVAY-EEPQLHG-VPQGLLGIVTACLEKDPARRPTVGHL- 'Bryobacter aggregatus WP_031500605' -----------------------------------------MQQQQLG-KYKFEQFLG-GGMSHVYKARDTLI----------------NRIVVVKILDDT---KKRFLREAQTAGAISHENIIRVYDF-GEHEGRPYMVMEYLQGHDLRASIQ----Q--GQLTTVVEKLKVLVQLARGMKHIHGLGIVHRDLKPDNVF-SDTGQVKLMDFGIAKT--KDLSTRTGYTLGTPYYMAPEQVTSKDVTDKADIYAYGILMFELFT-GTKPFKAE-NVHEVFFKILN-EPLDAQPLVPTSIVELTKRCCEKDPAKR------- 'Gemella sanguinis WP_031551991' -----------------------------------------MIDKMICNRYKIIDHLGTGGMATVWLGYDTIL----------------DRNVAIKTFEDA---VKRFNREAKAVTSLSHPNIVSIYDV-ENEGDFYYLILEYVEGMTLKDYMM----K--NPKMPIETIVHISKQIADGLCHAHQNGIIHRDIKPQNIL-NENLTCKITDFGIARA--YGDTTQTNQMLGTVYYLSPEQARGNVATAQSDIYSLGILIFEMIT-GQIPFKGE-SAVAIALKHLQ-EEL---PDVPQSVKNIVLKATMKNPNERYSSKEL- 'Pediculus humanus corporis XP_002423415' ----------------------------------------NVTTTFPRSKLKMKTILGQGNFGQVWKAEAEDMPGHEGK----------TRLVAVKTVE-----HKEFIKELEIMQQISHPNIVTLLGCCTDQ-EPNYLIMEYVKLGKLLTYLRYYNFSNNSDALTSKDLTLFSYCISRGMEYLASRGIIHRDLAARNVL-DHNKVCKIADFGMSRSVRNFEDVYEERQ-LPIRWMAPESLVYSVFTHKSDVWSFGIVMWEIVTLGSTPYPNM-GAREIMRRVRDGYRLERPNHCKPEFYRLISHCWSHDPNKRPDFSEL- 'Sorghum bicolor XP_002448816' --------------------DTEETDTLLQILKETAARNHS---QVDRSFLQIGEKIASGSSGDLYRGTYQ------------------GVDVAVKFLSS----KVEFLQEIIILKSVNHENVVRFYGA-CTKQRQYVIVTEYMPGGNLYDFLH----KLN-NTLDLTKVLRIAIGISKGMDYLHQNNIIHRDLKTANLLG-SDYVVKIADFGVSRN--PSQGDMTAET-GTYRWMAPEVINHKPYDHRADIFSFAVVLWELVT-SKIPYENL-TPLQAALGVRQGLRLEIPPLVHPQLSKLIQRCWDEDPNLRPSFSEI- 'Dictyostelium purpureum XP_003287539' -SNSQLKTQQSTLSPLSSSKSTLSSDSIDGKYVPKINGKTDILGEVLSKKINIYKELPKGASGKVYKGRYR------------------NKDVAIKVY-NFCFNTEEFDREITIMSLIDHPNFTRFYGANKQNPKYLFMVSEYVQGGSLRDLLL----N-KDKPLTYFTQLSIALDIANAMQYLHSIGVIHRDLKSLNVL-TDDYSAKVIDFGTSRAIDVSKQLN----LGTSSWMGPELFRNEPYTELCDVYAFGIVLWEIFC-RKEPYEGV-NSWSIPLMVAKGERPPVPSDCPSEYSKLMKACWADKPKKRPKFKDI- 'Dictyostelium fasciculatum XP_004360363' S--------------------NQQLQQLQLQQQQQQQQSSTSNSSIHYSEVSISHWIASGASGRVYAGYWK------------------GKEVAVKVFFD----EAEYKREVALMTLLKHDNLVQCFGS-GSYGNCYFHLTEFCSRGSLTEYLK----NPN-SPLDLNTQLNFALDIAHGMRYLHSMSVIHRDLKSMNILT-ENGKLKIIDFGTSRL--FNKQ-MTFMV-GTQSWMAPEVFTSKSYTEKVDVYSFGIILWEIFT-RRAPYDEN-VPFNTPFKVA-GERPEIPKETPSYVSNLIKKCWSHKPSHRPSFSKI- 'Melopsittacus undulatus XP_005152594' TNKQQRPVKAQLLPGQRFVSGYDGLHEDDLSFRKGEKLKVSLTTKIPRESIKLVKKLGAGQFGEVWM-------GYYNN----------STKVAVKTLQ-------AFLEEANLMKTLQHDKLVRLYAVVTKE-EPIYIITEFMAKGSLLDFLK----SDEGSKLLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVL-SDLLMCKIADFGLARVIEDNE--YTAREKFPIKWTAPEAINYGSFTIKSDVWSFGILLYEIITYGKIPYPGM-SNSDVMVALQRGYRMPRMETCPAELYDIMKTCWKDKAEERPTFDYL- 'Melopsittacus undulatus XP_005152595' ------NAEAQLLPGQRFVSGYDGLHEDDLSFRKGEKLKVSLTTKIPRESIKLVKKLGAGQFGEVWM-------GYYNN----------STKVAVKTLQ-------AFLEEANLMKTLQHDKLVRLYAVVTKE-EPIYIITEFMAKGSLLDFLK----SDEGSKLLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVL-SDLLMCKIADFGLARVIEDNE--YTAREKFPIKWTAPEAINYGSFTIKSDVWSFGILLYEIITYGKIPYPGM-SNSDVMVALQRGYRMPRMETCPAELYDIMKTCWKDKAEERPTFDYL- 'Melopsittacus undulatus XP_005152596' ---------PQLLPGQRFVSGYDGLHEDDLSFRKGEKLKVSLTTKIPRESIKLVKKLGAGQFGEVWM-------GYYNN----------STKVAVKTLQ-------AFLEEANLMKTLQHDKLVRLYAVVTKE-EPIYIITEFMAKGSLLDFLK----SDEGSKLLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVL-SDLLMCKIADFGLARVIEDNE--YTAREKFPIKWTAPEAINYGSFTIKSDVWSFGILLYEIITYGKIPYPGM-SNSDVMVALQRGYRMPRMETCPAELYDIMKTCWKDKAEERPTFDYL- 'Oryza brachyantha XP_006653907' --------------------DTEETDGLLQKLKEAEAHSHS---EFDRTLLQIGKKIASGSSGDLYRGTYL------------------GVDVAVKFLSS----KVEFLQEIMILKSVDHDNVVQFYGA-CTKHRKYLIVTEYMSGGNLYDFLH----KQN-NTLELPVVLRIAIGISKGMDYLHQNNIIHRDLKTANLLG-SGQVVKIADFGVSRL--RSQGDMTAET-GTYRWMAPEVINHKPYDHKADIFSFAIVLWELVT-SKIPYENL-TPLQAALGVRQGMRMEIPPRVHPRLSNLIQRCWDENPHVRPVFSEI- 'Moniliophthora roreri XP_007846368' ----------------MDYEQYRELLNQGGTLAQSLLDLLSLRASICTTMLRLSKAVAGGGFGDIWKGTLGTDS---------------GQIVCLKVIMYLMSDVQRFLREAVVWRQLKHPNVLPCLGLYYLDQERVCLVSPWMENGNLAQFLR----A-----QPSDSIDHLQLDIASGLSYLHTLKIVHGDLKGLNIL-TPSHRACIADFGLSRV--ADSQKLTSSTAGTARWSAPEVHMGHRATKESDIYSYGCVCYEIIT-RTYPYHELPNDAAVAFAVWRGDRPSRPQNIQDGLWSLMARCWEAEPASRPSLVDL- 'Prunus mume XP_008221867' -----------------------ELHDKESN-KVINMRAMEAPQEIIREKLVVKQVFASGGFGSVHKGIYD------------------GQEVAVKVMSL----KKDFRQEVSIWHKLDHPNITKCIGA-TMDT----VIIEYLSGGTLKAFLI----QHRKKKLPLKIVKRLAVDLAKGLSYLHSKNIVHRDVKTENVLD-KDGRVKLADFGVARL--EASNEMTGYT-GTPGYMAPEVLECKPYNRKCDVYSFGICLWEMYC-CDMPYPNI-TFSALTSAVVYNLRPEIPKQCPSSLAKVMKQCWDGEPKRRPEMEEV- 'Zea mays XP_008653068' --------------------DDEETEDLVEAVQKEIGRIESTPVEIDVKLLKFGNKVASGSYGDLYRGTYC------------------SQDVAIKVLDM----QREFAQEVYIMRKVRHKNVVQFIGA-STKPPNLYIVTEFMSGGSVYDYLH----KHK-GVFKLPTLVGVAMDVSKGMSYLHQNNIIHRDLKTANLLD-ENGTVKVADFGVARV--KAQSVMTAET-GTYRWMAPEVIEHKPYDQKADVFSFGILMWELLT-GKIPYEYL-TPLQAAVGVVQGLRPTIPKHTYAMLSELLQKCWQQDPAQRPDFSEI- 'Nicotiana tomentosiformis XP_009589903' ----------------------------------------VIKKEFDCKNIKVESLIGQGAYGSVYKGVYN------------------GKEVAVKILIV----TKAFTQEVSIWYKLNHPNIAKLIGA-SKNN---CFVVEFVPKGTLKSYLI----KNQVKKLPLRCVIQLGLDIAKGLSYLHSKKIVHRDVKTENLLD-KEGRVKIIDFGVSRV--EATCDMTGQN-GTMGYMAPEVLACLPYDHKCDVYSFGICLWEIYS-CSMPYPEQ-IPLSKTSPDVYGRRPEIPKSCPGALADIMKKCWDVNPKKRPEMQEV- 'Nicotiana tomentosiformis XP_009609063' -----------------------PFDDSCINYTTATATATPKKRYIDPSKLIIKSVIARGTFGTVHRGIYD------------------GQDVAVKLLSL----RAAFTQEVSVWHKLDHSNVTKFIGA-TMGSNICCVIVEYLPGGALKSYLI----KNRRKKLAFKVVVQIALDMARGLSYLHSEKIVHRDVKTENMLD-KTRTVKIADFGVARV--EASNDMTGET-GTLGYMAPEVLNGNPYNRKCDVYSFGICVWEIYC-CDMPYSNL-SFSEVTSAVVCNLRPEIPRCCPSSLANVMKRCWDANPDKRPEMNEV- 'Dictyostelium discoideum XP_639340' NHDNLIDSILIGLKNDLSQLCTQQIQLVLKRLKSAHSFINKLPKDIEESELQILQFLGEGALAEVHKGIWK------------------GKEVAVKIF--------DFLKEVAILGLISHPNLLKLKGA-CIAPSTFMIVTELMHKGTLLEVIN----KNK--PLSLEDIIKYALSVAQGLAYLHSVDFIHRDIKAANILD-KNNNAKVGDFGLSRV--IDNNNMTAVA-GTPKWESPECLMGEAYTSASDVYSYGMMLFELAT-GDEPFLEIQSIVELARSVCDKLKPKISSSVPNFISSLIKDCLHNSPKKRPTMNQI- ; END; BEGIN TREES; Title Analysis_of_DhMRE_proteins; LINK Taxa = Taxa; TRANSLATE [0] 1 Zea_mays_ACG43022, [1] 2 Candidatus_Arthromitus_AID44552, [2] 3 'Mollicutes sp. DhMRE_0026_SB', [3] 4 'Mollicutes sp. DhMRE_0031_SA', [4] 5 'Mollicutes sp. DhMRE_0091_SA', [5] 6 'Mollicutes sp. DhMRE_0349_SA', [6] 7 'Mollicutes sp. DhMRE_0521_SA', [7] 8 'Mollicutes sp. DhMRE_0574_SA', [8] 9 'Mollicutes sp. DhMRE_0602_SA', [9] 10 'Mollicutes sp. DhMRE_0673_SA', [10] 11 Oryza_sativa_EEC78293, [11] 12 Oryza_sativa_Indica_Group_EEC82761, [12] 13 Actinomyces_sp_EEZ77319, [13] 14 Propionibacterium_acnes_EFT55623, [14] 15 Rhizophagus_irregularis_ERZ99038, [15] 16 Rhizophagus_irregularis_ESA23675, [16] 17 Reticulomyxa_filosa_ETO06916, [17] 18 Candidatus_Entotheonella_sp_ETX03748, [18] 19 Rhizophagus_irregularis_EXX50138, [19] 20 Rhizophagus_irregularis_EXX52070, [20] 21 Rhizophagus_irregularis_EXX52799, [21] 22 Rhizophagus_irregularis_EXX53579, [22] 23 Rhizophagus_irregularis_EXX53679, [23] 24 Rhizophagus_irregularis_EXX57010, [24] 25 Rhizophagus_irregularis_EXX57629, [25] 26 Rhizophagus_irregularis_EXX59664, [26] 27 Rhizophagus_irregularis_EXX60083, [27] 28 Rhizophagus_irregularis_EXX62203, [28] 29 Rhizophagus_irregularis_EXX62449, [29] 30 Rhizophagus_irregularis_EXX62915, [30] 31 Rhizophagus_irregularis_EXX64131, [31] 32 Rhizophagus_irregularis_EXX68008, [32] 33 Rhizophagus_irregularis_EXX68629, [33] 34 Rhizophagus_irregularis_EXX68646, [34] 35 Rhizophagus_irregularis_EXX70205, [35] 36 Rhizophagus_irregularis_EXX72075, [36] 37 Rhizophagus_irregularis_EXX72302, [37] 38 Rhizophagus_irregularis_EXX78128, [38] 39 Gigaspora_margarita__GBYF01035394_, [39] 40 Gigaspora_margarita__GBYF01035393, [40] 41 Gigaspora_margarita__GBYF01002907, [41] 42 Gigaspora_margarita__GBYF01077659, [42] 43 Gigaspora_margarita__GBYF01079662_, [43] 44 Jaapia_argillacea_KDQ58145, [44] 45 Hyalangium_KFE71249, [45] 46 Mortierella_verticillata__KFH64473, [46] 47 Mortierella_verticillata__KFH68653, [47] 48 Mortierella_verticillata__KFH68654, [48] 49 Mortierella_verticillata__KFH73872, [49] 50 'Staphylococcus equorum WP_002512299', [50] 51 'Propionibacterium acnes WP_002523165', [51] 52 'Actinomyces odontolyticus WP_003795290', [52] 53 'Streptomyces tsukubaensis WP_006349016', [53] 54 'Gemella sanguinis WP_006365029', [54] 55 'Frankia sp. WP_006538975', [55] 56 'Candidatus Arthromitus WP_007440516', [56] 57 'Candidatus Arthromitus WP_007445770', [57] 58 'Caldalkalibacillus thermarum WP_007505056', [58] 59 'Staphylococcus saprophyticus WP_011303296', [59] 60 'Cyanobacterium aponinum WP_015220094', [60] 61 'Desulfocapsa sulfexigens WP_015404907', [61] 62 'Staphylococcus equorum WP_021338714', [62] 63 'Mycoplasma sp. WP_022503520', [63] 64 'Streptomyces sp. WP_024489204', [64] 65 'Bacillus mannanilyticus WP_025026530', [65] 66 'Nocardiopsis alkaliphila WP_026117930', [66] 67 'Streptomyces griseoluteus WP_030215949', [67] 68 'Bryobacter aggregatus WP_031500605', [68] 69 'Gemella sanguinis WP_031551991', [69] 70 'Pediculus humanus corporis XP_002423415', [70] 71 'Sorghum bicolor XP_002448816', [71] 72 'Dictyostelium purpureum XP_003287539', [72] 73 'Dictyostelium fasciculatum XP_004360363', [73] 74 'Melopsittacus undulatus XP_005152594', [74] 75 'Melopsittacus undulatus XP_005152595', [75] 76 'Melopsittacus undulatus XP_005152596', [76] 77 'Oryza brachyantha XP_006653907', [77] 78 'Moniliophthora roreri XP_007846368', [78] 79 'Prunus mume XP_008221867', [79] 80 'Zea mays XP_008653068', [80] 81 'Nicotiana tomentosiformis XP_009589903', [81] 82 'Nicotiana tomentosiformis XP_009609063', [82] 83 'Dictyostelium discoideum XP_639340'; TREE Fig._2 = ((60:1.1708850245315903,(((66:0.46230266139648696,67:0.5431985013074304)100:0.8507174928747144,((13:0.8151565430030033,(14:0.009087228667211119,51:0.00000092868385545525)100:1.1156000101381396)69:0.18716437964923066,(55:0.6765092919930554,(53:0.06328405845995222,64:0.03396358642423826)100:0.4390271013595602)67:0.16262988566072462)98:0.4116872574976609)56:0.14941964528694435,((61:0.8213496680689542,(45:0.8621211373390756,68:1.0477800295454467)26:0.21948081127874894)16:0.15362624622415563,(18:1.3055793706642138,(52:0.9918749251764204,(((58:0.15960878066588063,65:0.1517036001248184)100:0.2354653748166763,(2:0.00000092868385545525,(56:0.00000092868385545525,57:0.00000092868385545525)73:0.004412645702489914)100:0.6941531634070285)53:0.15045264713471096,((59:0.05953122807242845,(50:0.004514854992839381,62:0.00000092868385545525)100:0.09152416909036884)100:0.5396319521035678,(63:0.4949833467297358,(54:0.00000092868385545525,69:0.00000092868385545525)100:0.40185924725682914)39:0.054104529621105846)47:0.12399579248898751)41:0.19526962545336354)36:0.2012870235399422)17:0.09604207094748475)54:0.2672301227113187)87:0.4002388340195857)100:0.2650347136231114,(((83:1.30600576305215,(44:1.0266856743089656,78:0.805228544845156)100:0.8461048580563131)12:0.03794899708468641,((17:1.0947160809179257,(70:0.7890568991107758,(75:0.00000092868385545525,(74:0.00000092868385545525,76:0.00390847684413569)47:0.01169491629143763)100:0.919501058698902)100:0.7569910087524362)48:0.21464536123073297,((72:0.8590209263607856,73:0.6810281322268339)99:0.49920529530073876,((81:0.3829960534261174,(79:0.3061994674754212,82:0.28183768496537764)91:0.15079572763094828)100:0.5719939691075815,((1:0.00000092868385545525,80:0.003996419326831146)100:0.3931881980168665,(12:0.18766300950274023,(71:0.12199876491315459,(11:0.02884861657258116,77:0.02549805829916631)97:0.05852636778705608)92:0.07635767158145869)100:0.2964812142598359)100:0.4442148249987834)55:0.17414597101618967)21:0.07873548445667812)17:0.14630919688767519)71:0.21069184628694582,((46:0.9933036119589361,(49:0.10069788539088294,(47:0.00000092868385545525,48:0.00000092868385545525)100:0.22292135169407093)100:1.3475149623361486)84:0.3259920221120772,((7:0.1007425715379533,42:0.1315385472596072)100:0.9874045006589015,((37:0.05163698100655022,(21:0.03997709838656924,(19:0.1591569809948328,(20:0.06554996686880553,33:0.06820376284149737)51:0.007530554809056206)52:0.035595956308213175)49:0.024952916149129308)100:0.717713272426288,(((9:0.49773932487926037,(5:0.00000092868385545525,10:0.00000092868385545525)100:0.5380175931232618)62:0.0800864812484892,((39:0.00955235388444992,40:0.017614623057709018)100:0.7658169630279742,(4:0.5903702044465078,(3:0.33853994995473363,(6:0.30363130538846905,8:0.39043399232592946)70:0.04783196328232803)100:0.3920230570043966)20:0.05170406307287625)27:0.03791234963129545)63:0.13570861328055825,(((29:0.2518307463553475,32:0.310532147177759)100:0.17265320049424843,(16:0.4011184080974533,((15:0.21410511896622134,26:0.282778383045026)49:0.03519613226134181,(22:0.19088753812708623,(23:0.17702344896469527,30:0.16347912705267698)68:0.05028485591630154)45:0.031453157584139385)52:0.04192433579585512):0.08510667245014603)95:0.17450319884282,((41:0.6046045658635607,43:0.6516112070452682)31:0.09278580712052252,((34:0.15106420380166305,35:0.2009649163765532)100:0.1505290515274787,(24:0.18488047447526662,(28:0.12305222857753847,(38:0.22223288647313383,(27:0.14981247954787677,(31:0.09565734802291707,(25:0.12337102448260982,36:0.06880236033495615)81:0.020595390302206536)88:0.0428072582265048)58:0.023123268494084716)45:0.04473210196250791)36:0.027160234132337233)67:0.07891218065849381)100:0.2528739861255557)17:0.05371453640850052)96:0.08159901068542548)33:0.16742359178068578)61:0.2948945648861897)74:0.44102255882873687)90:0.48484754019671483)97:0.2650347136231114)[%setBetweenBits = 'string:selected' ] [%unrooted = on ]; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 321; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 321; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 321; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1433926751015; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6964480961424716854; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2977427989399477195; mqVersion 302; checksumv 0 3 2996588423 null getNumChars 321 numChars 321 getNumTaxa 83 numTaxa 83 short false bits 1048575 states 1048575 sumSquaresStatesOnly 3.3710851511337E14 sumSquares 3.3710851511337E14 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 267; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1680 938; setLocation -4 -4; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #6964480961424716854 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1277.1433926442859.3330604555097596495; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1413 866; setLocation -4 -4; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.zoom; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.ornamental.CircularTree.CircularTree; tell It; setEdgeWidth 6; getEmployee #mesquite.ornamental.NodeLocsCircular.NodeLocsCircular; tell It; branchLengthsToggle off; toggleScale on; endTell; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 1; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #2977427989399477195 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 479; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1413 866; setLocation -4 -4; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;