#NEXUS [written Wed Jun 10 11:11:54 CEST 2015 by Mesquite version 3.02 (build 681) at AG-SCHUESSLER-HP7900_1/10.153.191.186] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=44; TAXLABELS Botryobasidium_botryosum_KDQ08310 Botryobasidium_botryosum_KDQ08572 'Citrus clementina XP_006441584' Citrus_sinensis_KDO39076 'Coprinopsis cinerea XP_001839086' 'Coprinopsis cinerea okayama XP_001834263' 'Dictyostelium fasciculatum XP_004363268' 'Dictyostelium fasciculatum XP_004363270' 'Dictyostelium fasciculatum XP_005951667' Erythranthe_guttata_EYU22765 Fibroporia_radiculosa_CCM03857 Galerina_marginata_KDR76127 Gigaspora_margarita_GBYF01010756 Gigaspora_margarita_GBYF01025162 Gigaspora_margarita_GBYF01016789 'Mollicutes sp. DhMRE_0015_SB' 'Mollicutes sp. DhMRE_0016_SB' 'Mollicutes sp. DhMRE_0018_SB' 'Mollicutes sp. DhMRE_0019_SB' 'Mollicutes sp. DhMRE_0032_SA' 'Mollicutes sp. DhMRE_0522_SA' 'Laccaria bicolor XP_001881657' Lotus_japonicus_AFK35981 Lotus_japonicus_AFK43720 'Maylandia zebra XP_004572988' 'Moniliophthora roreri XP_007845326' 'Neolamprologus brichardi XP_006807521' 'Phanerochaete carnosa XP_007396574' 'Phanerochaete carnosa XP_007393886' 'Phanerochaete carnosa XP_007393925' 'Phanerochaete carnosa XP_007402240' Rhizoctonia_solani_CCO30892 Rhizophagus_irregularis_ESA07576 Rhizophagus_irregularis_ESA09071 Rhizophagus_irregularis_ESA09278 Rhizophagus_irregularis_ESA16792 Rhizophagus_irregularis_ESA17559 Rhizophagus_irregularis_ESA20877 Rhizophagus_irregularis_EXX63813 Rhizophagus_irregularis_EXX67387 Rhizophagus_irregularis_EXX72584 Rhizophagus_irregularis_EXX74001 Rhizophagus_irregularis_EXX77776 Stachybotrys_chlorohalonata_KFA66904 ; END; BEGIN CHARACTERS; TITLE Endobacteria_in_arbuscular_mycorrhizal_fungi_AIG_domain_of_the_proteins_described_in_the_DhMre_genome_draft; DIMENSIONS NCHAR=240; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX Botryobasidium_botryosum_KDQ08310 RDIVIVVMGSTGAGKSSFINLVSG-SN-----LDVGEALRSQTTLPQ-PAYFELFG-RRVVLIDTPGFDDTE--RNDAEVLDVI-GKYLSVLHSQGLDITAVVYLHRISD--NRVAGSALNNL-RMCQAICGD----SAIKNLIVCTTMWEQVLPGVGEAREKELLETEQFWGRAIQRGARSLR--ATFGY------DPV-VLAIQHELVEEGKLLMETTAGVLVDAA-IRRLQAKH--- Botryobasidium_botryosum_KDQ08572 SDALIAVIGPTGAGKTTLVNRMSG-VN-----FKIGYGLQSETQQIQTAKC-TLDG-QRVHLIDTPGFDNTE--MADGDVLYLI-GTYLADIYRSGRQLTGILYLHSINS--NQAG---IQNI-RILEKLCGD----NAMASVTICTTMWNNVSEHVGAEREQELAAR--LWNNMISKGATIRRVL-----------KPV-TLDIQREIVDEGKSVFNTKAAWALGCR------------ 'Citrus clementina XP_006441584' GERTVVLLGRTGNGKSATGNSILGRRA-----FKASAGSSAITKTCE-MKTTVLDG-QVVNVIDTPGLFDS--SAESEYVNKEI-AKCIGMAK-DGIHA-----VLLVFSVRSRFSQEEEAAV-HRLQTLFGK----KIFDYMIVIFTGGDDLEDNEKTLEDYLGL-ECPKP---LKEILQLCD--RWVLFDN------------------------KTKYEAKRTEQVQQLLSLVN--- Citrus_sinensis_KDO39076 GERNLVLVGRTGNGKSATANSILGKRA-----FKSKAGSSGVTKTCE-MQRTMLDG-QVVNVIDTPGLFDS--SADSEFVSKEI-VKCIGMTK-DGIHA-----VLVVFSVRNRFSEEEGAAI-HILESLFGK----KISDYMIVVFTGGDELEDNDETLEDYLGR-ECPKP---LKEILQLCD--RCVLFDN------------------------KTKDTAKRTEQVGKLLSLVN--- 'Coprinopsis cinerea XP_001839086' DTITIAVMGATGSGKSTFINLVSG-SS-----LPTSSGLRSCTASIHETPPFELDG-KKIVLIDTPGFDDTT--KSDTEILKLI-ADHLANSYRQNNHLSGLLFLHRISD--TRIGGISAKSF-RTLHTLCGK----PALPNLIILTTMWDITDFSLAEAREHELASEEMFFKPALEKGARMMR--QVVWNLERTGGRRV-VLQIQREVVDEGKDVSDTAAAEELDRQ-MKELKEKQ--- 'Coprinopsis cinerea okayama XP_001834263' STKLIALMGATGSGKSSMINAIVGKDV-----AEVGHSLESATAEVQ-QYTFSYRG-AEIRIIDTPGFNDEEGSLSDLDILNMI-AAFMHKEYEDDFKFSGIIYLHNISA--PKVDRMGIRNM-NVFKGLCGA----DFMKNVVIATTCWDLVEKGEGEDNETELQEGEGLLKDFLDGGATFVR--HVLSL------DPS-FVQMQEEMA-HVPCVAETTAGGELKEE--------Y--- 'Dictyostelium fasciculatum XP_004363268' VKRTVLLIGSTGKGKSTLASVISSTSHE----FKSKDASVGVTKECK-KKLFKKKG-LHLTLLDSPGLHDP--NISHDSIFNNI-AETCYALRGTGINQ-----IIFVTR--GRFDQNEIDVL-VTMIDALFGGDMD-YLKYTTIVRTHSDFYQNKQKCDSDLEKLKKIDPM---VGDIIDACN---VLYVDNS-----------------MTS---DNKRSVDSKRSREIVLNHLI--- 'Dictyostelium fasciculatum XP_004363270' -KRTILF--------------VVSHSNE----FHEMNSSTGCTQKPK-KKIFKAKGPLELSVVDTVGLADP--QQENEKIFRNI-GETCHSLRTTGINQ-----IIFVTK--DRFDTCELACF-QLVIKTLFAGDGDKCLKHTTIIRTGTTFFKDEAKCKKDLEGLKNSDPF---MKEMIEKCN---FIYVNNP-------------------P---DNAATREESRTK--ILNHLI--- 'Dictyostelium fasciculatum XP_005951667' KDLRIVLVGKTGVGKSAAGNTILGRDA-----FKSELTSSSVTEVCE-KKMGEFGG-LKLAVIDTPGLGDT--KQSEEQVRREI-ARCMSFAA-PGPHV-----FLVVLQP-TRFTKEEQKSV-KIIQTIFGK----EASRYTMVLFTHGDELKKRHSSIEKLINE-N-PD----LRRFISQCH--NHHVFDN------------------------DDRDPS----QLKELLLKIS--- Erythranthe_guttata_EYU22765 SSRTVVLVGKTGNGKSATGNSILGTNK-----FKSKCSSGGVTRTCE-IQRTILDG-EILNVIDTPGLFD----AEHEFIGKEI-AKCISMAK-HGIHA-----VILVLSVRSRFSQEEEAAV-ETLRKLFSS----KISNYMIVVFTGGDDLDENDETLDDYLGRDDCPQS---LKETLRMCG--RCVLFDN------------------------RTKDEGKKYVQQRKLLSLVN--- Fibroporia_radiculosa_CCM03857 EPKLIIIMGATGSGKSTFANLATG-AD-----FRVGHGLQSCTETIQ-QETLQLDN-EVVTIIDTPGFDDTE--RPQADVLREI-ADFLKAEYENKTKVAGVVFTYRISD--HRMSGVSLENY-RLFRKICGD----MAMENVAVVTTMWTSSNQTVGMRREKELSTN--FFKDAIENNARMYR--DLMGR------KSG-ALRVQVELVDQHKSIPETEAGTQLQSA-LDEEEKRH--- Galerina_marginata_KDR76127 LDVNIAVMGATGSGKTTFVNLASS-SN-----LSVGHGLQSCTSRVQVSSQFELDG-RSVTLIDTPGFDDTT--TSDMDILRQI-SEFLSKTYKDGKRLSGVLYIHRISD--FRVGGISRRNF-KMFRELCGE----RTLVNVIIVTNMWGDVSKEIGEQREDQLATQDIFFKPTLEKGARLLR--HIIDN------HPL-PLQIQQEIVEQARDIGETSAGIELQNEFIIAEAEKH--- Gigaspora_margarita_GBYF01010756 EIKNLLIVGRTGNGKSTLANVLSGTNE-----FKESEKSVSETKYFQ-DEYFTHKG-NVYRVVDTIGVGDT--KLSKNDILLRI-AEAVYTMK-EGISQ-----IFFVVG--RRFTKEETETF-ELLKKAIFE---SNIIKHTTIIRTNFTNFRNPDKCKIDRQELIEENKF---LAEIINSC---GIIHIDAPSIEVD------------CERRLQFNKEDRDTSRIK--LLDHL---- Gigaspora_margarita_GBYF01025162 EIRNILVIGCTGNGKSTLCNVLVNKDNELKEIFEESDGSTAKTRNIQ-SEVFKYKG-IKYRIIDTIGFGDT--KLKPREVILSI-AESYKKIE-NGLTQ-----IFFVTE---RFTLQAVEVY-EILKKVLFD---ENITDYITIVKTKFSRFKYKSECEKDIQKLEKDSKK---IHGVIESCN--RIIYVDNPQINEHIYED--------DIAVFESNKKKREESRKI--LLNHL---- Gigaspora_margarita_GBYF01016789 QVRNIMLIGRTGNGKSTLANVLLNKNDEFEEVFKESSGSISGTKDIQ-NEVLKVKY-VKYRIIDTVGLGEN--NITIQEMLKKI-AKTIPFVD-EGLHR-----IFFVIR--NRFTENEKKAY--LLKESIFD---NEVVKYTTIINPWFSDFENETACKDDGLKIKNENQE---LADFIKS----RIIHVNTLPLKGS-------------SYIVNAHKKARKASRQK--LLAHL---- 'Mollicutes sp. DhMRE_0015_SB' NTRNILLIGRTGSGKSTLANVLLNSHGNFEEIFKESAGSIGKTRDIQ-IAEFEENR-INYRIVDTAGFGTA--GFVAEEFLCQLDGNIINHLNKEGF-Q-----ILFVVG--ERFSEEEIKTF-NLLNSVIFD---NDVVNCITIVKTKFPDFEKKQAYEEDCRSIRND------LLNILED----KIIHIDNPPM----------------------------TSHYV--EIAHLG--- 'Mollicutes sp. DhMRE_0016_SB' NQRNILLIGRTGKGKSTLANVLTNTNK-----FKESEFAVSETKNIQ-IGQFKHND-IKYQVIDTVGIGDT--KLSEQEVLQKI-AEAVYAVR-YGLSQ-----VLLVTS--GRFTQEERIIYEELLKKAIFD---QDIAKYTTIVRTNFPNFRNENRCREDIERMKKNNAE---LAEIITSC---KLIHVNNPPLDID------------DPEELKIYQKAREKSRLI--LLEHL---- 'Mollicutes sp. DhMRE_0018_SB' MFKTIILLGKTGSGKSALSNVLVDKDNSFKEIFKESSLSVSQTRNIQ-SEKFEGDD-INYLIIDTPGIGDT--KLAEHEILDII-AGAVYLSK-DGVKQ-----VFFVIN--SKFSQYETIVY-NLLKKTIFD---DNILDYTTIVRTNFPNFRTKKESEEDINLMTKESNE---LAEIISSCQ--KIIHVDNPPLSDD------------------FNKSMRIKSKER--LLKYLQ--- 'Mollicutes sp. DhMRE_0019_SB' DVRNILIVGITGNGKSTLANALSNTEQ-----FKEGGYSTSTTKNFQVSDIFEWKG-KKYRVIDNVGFGDT-SKLSERDNLFKI-GEGIHSTK-EGINQ-----VLFIFQ--GRFTSEQSLAY-KTFKDFISE---SQITKFTTLVRTNFSDFKIKEICQKDQQALFNENEKSGELKEIISFC---SIIHVDNPSTNISAADDEDEKEREERERKLNSNKKIRTESRER--VLNYLV--- 'Mollicutes sp. DhMRE_0032_SA' MVRNILIVGITGSGKSALANVLTGTND-----FKEKESGVSVTREFQ-KSSNPFQL-ANYYVIDNVGFGDNRSELSKEVILYEV-AKAIYFIREEGINQ-----VFFVFS--EKFSKADVGNF-NLFKGLILE---SGITKFTTLVRTNFKKFEDSQKCKEDQQALLETNKE---IEEIIESCN--KILHVDNPTLDIAPADDEDDEDKIERENKINENGSKRGASREK--LLKHLGD-- 'Mollicutes sp. DhMRE_0522_SA' TTRNILIVGWTGSGKSTLANVLSSSKD-----FIESNKSTPETKWGRPSSEFEWKG-NYYCVIDNIGFGDT--EVNEKEELIRI-GKAISEVS-QGLSH-----VLFVYK--KRFSDKEKEAFGKLNALKITE-------SLITIVRTNFDNFKSKERRENDIKSLKEEDLG---IKQTINSCR---LLHVNN------------------------NNDKNRNTSREI--VLDHLH--- 'Laccaria bicolor XP_001881657' KSVTVLLMGQTGTGKSSFIRLLTGNKD-----VKIGKSIEPETSDISTFDYAQNDG-LEVSLVDTPGFDDAH--MSDSKLLQDL-IEFLLKR-RNAKTVNGLIYLHRISD--VRFGGTATRNL-RMFSRLCGP----DAMKNVVILTTRWDETRRDVAEKTEADLTNS--HFKEFVNNGAKVLR--SIMDL------PPIGEIKVVNEIV-GGRSLAETDAGRELDSQ-LTQLKTQH--- Lotus_japonicus_AFK35981 EVRTVVLVGRTGNGKSATGNSILGKKV-----FKSRASSVGVTSSCE-SHTIELDG-QTVNVIDTPGLFDI--SAGSDFVGKEI-VNCINLAK-DGIHA-----IIVVFSVRTRFSQEEATAL-RSLQTLFGD----KIYDYTVGVFTGGDELEEEDQTLEDYLGC-DCPEP---LKDLLSLCE--RRLLFDN------------------------KTKDERKRSEQVQQLFSFVN--- Lotus_japonicus_AFK43720 EVRTVVLVGRTGNGKSATGNSILGKKV-----FKSRASSVGVTSSCE-SHTIELDG-QTANVIDTPRLCDI--SAGSDFVGKEI-VNCINLAK-DGIHA-----IIVVFSVRTRFSQEEATAL-RSLQTLFGD----KIYDYTVVVFTGGDELEEEDQALEDYLGC-DCPEP---LKDLLSLCE--RRLLFDN------------------------KTKDERKRSEQVQQLFSFVN--- 'Maylandia zebra XP_004572988' PDLRIVMIGKTGVGKSAVGNTILGKKH-----FKSLPSSESVTETCQ-TGETQWEG-RNISVIDTPGILDT--EKSAEMIKKEI-VRCVEVSS-PGPHV-----FLLVLQV-GRFTKEEKNSV-KALQALFAP----KAQHYMIVLFTHGDDLEDQEITIQKYVRE-AKPE----LRQVIHSCG--RFHVFNN------------------------RSKDRK----QVEELMKKID--- 'Moniliophthora roreri XP_007845326' KEAVIAIMGATGSGKTTFINAVSG-GN-----LRVGGDLESCTSTIELSPTFDLRG-RQVTLIDTPGFDDTN--RSDADILNMI-AVGLASMYENNQMLAGVIYLHRISD--IRMGGISRRNF-KMFRKLCGD----NTLKNVVIVTNMWGLVDKDVGVAREAQLKQEDKFFKPALEKGAQIVR--YLIER------KPL-PLQIQIELVDEQKTMPQTAAGAELNRE-LLEQSRKH--- 'Neolamprologus brichardi XP_006807521' PDLRIVIIGKTGVGKSAVGNTILGKKH-----FESRYCSRSVTETCQ-TGETQWEG-RKISVIDTPGILDT--EISAEMIKREI-VRCVEVSS-PGPHV-----FLLVLQV-GRFTKEEKNSV-EALQELFGP----KAQHYMIVLFTHGDDLEDQETTIQQYVRE-NEPE----VRQVIHSCG--RFHVFNN------------------------RSKDRK----QVEELMKKID--- 'Phanerochaete carnosa XP_007396574' ------VMGATGAGKSTFVNLISG-SQ-----LQVGEGLRSCTPEVQTSKPFELFG-RQVTLIDTPGFDDTL--KTDTEILKHI-ASFLANAYRENKKLSGVIYMHRISD--FKVGGISRRNF-GMFRSLCGE----TTLKNVIIVTNMWSEVGEQKGAARERELAADNALFKPVIDKGARMMR--VLVEN------QPL-ALQIQREIVDQRKTLEQTTA------------------- 'Phanerochaete carnosa XP_007393886' DSATIVVMGATGAGKSTFINLVSN-SK-----FEVGYGLESCTSEVDVAAPFMLDG-KPVTLIDTPGFDDTV--KTEAEILRLI-AEFLSVTYKQGRTLHGIVFLQRITD--TRMGGVARKNF-RLFRKLCGD----DTLRNVIIATNMWGNVEPALGASREREMAESDLFFKPALEKGAHMVR--EIIGF------PPA-PLQIQRETVDQRKPLAETGAGQDLRAD-LEQQAGQH--- 'Phanerochaete carnosa XP_007393925' DTVTIAIMGATGSGKSTFVNRASN-SR-----LEESGSLESCTDNVVVAEPFLLDG-KVVTLIDTPGFDDTT--KTEAEVLGLI-SAFLSATYKQGRTLNGVIYMQNITI--HRMGGMARKNF-RLFRKLCGD----ATLKNVLIATNMWSDVNPTLAAQREREMAEKDIFFKSAIEKGARMVR--EIMGF------TPA-PLQIQRETVDENKPLPETDAGQDVKAG-LEEQLTRY--- 'Phanerochaete carnosa XP_007402240' DSATIVVMGATGAGKSTFINLVSS-SK-----FKVGYGLESCTSEVEVAAPFMLDG-KTVTLIDTPGFDDTI--KTEAEILRLI-ADFLAVTYKQGRTLNGVIFLQRVTD--TRMGGVARKNF-RLFRKLCGD----ETLKNVVIVTNMWSNVEPGVGAEREREMAGSDLFFKPALDKGAHMVR--EIVGF------PPA-PLQIQRETVDEHKPLAETGAGQDLTAE-LERQAGRH--- Rhizoctonia_solani_CCO30892 GVSIIALFGATGAGKSSFANLASGRDD-----LTVGHSTRSCTQNVYQTVPFKVDG-RPVVLIDCPGFDDSH--SSDAEILKRI-AAFLTFTYEKNINLTGIIYLHRITD--NRFGGASGSNF-RMFRKMCGT----DACQNVLIVFGMWSYPPTEEQIAREADLINGEHAFKGILAEGAKTAR--RLIGH------KPV-PLELPRQ-IHGGMKLEETAAGRAVAGE-LGEQLRQQ--- Rhizophagus_irregularis_ESA07576 ETRNILLIGRTGNGKSALANVISGTSK-----FKESEFVNSETKDVQ-IEIVDIDG-INYKIVDTVGLGDT--ELTMQQVLNKL-ADASHVLR-KGLSQ-----VLFVTS--GRFTEEELIAF-DLLRTVLFD---ENIVNYTTIVRTKFPGFRKPEKCEEDKKRM--ENDK---RTEVVKLC---KFIHVNN------------------LSEDEDPEQKAREDSR-I--ILRTLL--- Rhizophagus_irregularis_ESA09071 GVRNILLIGRTGNGKSALANVISGTNK-----FREIEDSVSETKELE-LETFGYQG-IKYRVIDTVGIGDT--KLKSKDVLNRV-AKACYEVR-EGLNQ-----IFFVIG--GRITEEELETY-NLLKQIIFN---EDIYSYTTIVRTRFTDFEDERRCEEDKEKISQENEK---LAELIRIC---KLIHVDNPPV---------------KGRSAATNKEIREVSRER--LLKHLI--- Rhizophagus_irregularis_ESA09278 EVRNILIIGRTGNGKSTLANVLSNSWN-----FLESSGSISKTKNFQ-SETFEWGE-TKYRVFDTIGIGDT--QLSKATILYRI-AEGINFME-GGINQ-----VLFIVG--GRFTEEEVNAF-NLFRLVLHE---SRILEYTTLVRTKFSRFKNSEKCREDNEELLRENE------EIVNSF---KVIYVDNPSIDTD------------DEEERRINGNKRDQSREI--ILNYLK--- Rhizophagus_irregularis_ESA16792 INKNVIIIGHTGGGKSTLCNVLTDSDE-----FDESGNSFSVTNSFQ-KKNFQWMG-KCFNVVDTIGVGDT--KLSTRRVLYKI-LDGIFSIP-EGISQ-----ILFVVD--GRFTAEEVKIF-NLLKGSIFDIFKTHILYYVTIVRTKFRYFNDKDRCDADKEQLHNENDI---IAEIVKSCR---VIYVDNPPIYIEIVDEE-------DVETVVTNERIRRKSRKI--LLNHLN--- Rhizophagus_irregularis_ESA17559 EVRNILLIGRTGNGKSALANVISGTNK-----FREIEDSVSETKELE-LEMFGYQG-IKYRVIDTVGIGDT--KLKSKDVLNKV-AKACYEVR-EGLNQ-----IFLVIG--GRITEEEIETY-NLLKQVIFN---EDIYNYTTIVRTRFTDFEDERRCEEDKEKISQENEK---LTELIREC---KLIHVDNPPV---------------KGRSATTNKEIREVSRER--LLKHLI--- Rhizophagus_irregularis_ESA20877 EVRNILLIGRTGGGKSTLGNVLINNND-FEEVFKESDGSVSATKNID-EKLVEIDG-VEYRIIDTIGIGDT--KLTAQGVLTRL-AEIANRVKSEGLNH-----ILFVTK--GRFTKEEVEAY-DLLSSIIFD---SEVLRYTTIVRTNFNGFEDREKCDNDRAALRMENGG---FLDAVD------IVYVNNPSIEVF----------------GDMAKKIRESSRKR--LLTYL---- Rhizophagus_irregularis_EXX63813 ETRNILIIGRTGNGKSTLENVLTNSEK-----FNEGSGTISTTKELQ-KEDFEIEK-VQYRVVDTIGIGDT--QLAQREVLNRI-AEACHEVG-KGLNQ-----IFFVLG--RKFTEEELEAY-NILREIIFD---ESITCYTTIVRTNFPNFDSEEKCKEDREKLNQESPK---LAELVRTC---KLIYVDNPPTNIEVGKNISEKQKNRKLKEIETNREKREESRDV--LIKHLI--- Rhizophagus_irregularis_EXX67387 EVRNILLIGRTGNGKSALANVISGTNK-----FREIEDSVSETKELE-LEMFGYQG-IKYRVIDTVGIGDT--KLKSKDVLNKV-AKACYEVR-EGLNQ-----IFLVIG--GRITEEEIETY-NLLKQVIFN---EDIYNYTTIVRTRFTDFEDERRCEEDKEKISQENEK---LTELIREC---KLIHVDNPPV---------------KGRSATTNKEIREVSRER--LLKHLI--- Rhizophagus_irregularis_EXX72584 I-KNIVIVGCTDVGKSTLANIITGSDY-----FSKSAYTASKTINFK-KKHFKWNG-KYFCIVDAIG---P--KLTTGNTLLKS-VEEIFSML-EGISQ-----ILFVID--GRFTTEEIKIF-NLLKGLIINIFEINILEYVTIVRTKFSNFKKKKECEADKNQLHNENES---ISEIVKSCR---VIHVDNPSVNIQITDDD-------DQYTVNINKKIRERSRKI--MLDYLD--- Rhizophagus_irregularis_EXX74001 INKNVIIIGHTGGGKSTLCNVLTDSDE-----FDESGNSFSVTNSFQ-KKNFQWMG-KCFNVVDTIGVGDT--KLSTRRVLYKI-LDGIFSIP-EGISQ-----ILFVVD--GRFTAEEVKIF-NLLKGSIFDIFKTHILYYVTIVRTKFRYFNDKDRCDADKEQLHNENDI---IAEIVKSCR---VIYVDNPPIYIEIVDEE-------DVETVVTNERIRRKSRKI--LLNHLN--- Rhizophagus_irregularis_EXX77776 IMKNLIIVGRIGGGKSTLFNILTESED-----FEESGRSISVIKNFQ-KKDFEWHG-KSFSVVDTIGVGDT--QLSTKKVLYKI-LDGIFSIP-EGISQ-----ILFVID--ERFTTEEVKIF-NLLKGSIFDIFGIHIFKYVTIVRTKFSNFKNKSECEADKEQLHNENEN---IAKIVKSCR---IVYVDNPPTNFQIFDED-------DQETVATNRRKRERSREI--LLNYLD--- Stachybotrys_chlorohalonata_KFA66904 KDVVIAVMGMTGSGKTTFISKVTGRSD-----LKIGHDLTSCTRDIEVIET-KIGD-TTVRFVDTPGFSDTH--LSDTEVLQMI-ADYLATAYKNDMKLSGIIYLHPISD--TRITHHATKNL-EMFRKLTGE----KNLKNVVLTTSMWDKVSPEEGARREAELKSK--FWKVFVALGANVTR--MLMGN------HPF-YLQLQEEMGRGNKLLRDTSAGRELMVE-IGRMKKEH--- ; END; BEGIN TREES; Title Endobacteria_in_arbuscular_mycorrhizal_fungi_AIG_domain_of_the_proteins_described_in_the_DhMre_genome_draft; LINK Taxa = Taxa; TRANSLATE [0] 27 Botryobasidium_botryosum_KDQ08310, [1] 28 Botryobasidium_botryosum_KDQ08572, [2] 31 'Citrus clementina XP_006441584', [3] 26 Citrus_sinensis_KDO39076, [4] 33 'Coprinopsis cinerea XP_001839086', [5] 32 'Coprinopsis cinerea okayama XP_001834263', [6] 35 'Dictyostelium fasciculatum XP_004363268', [7] 36 'Dictyostelium fasciculatum XP_004363270', [8] 38 'Dictyostelium fasciculatum XP_005951667', [9] 22 Erythranthe_guttata_EYU22765, [10] 3 Fibroporia_radiculosa_CCM03857, [11] 29 Galerina_marginata_KDR76127, [12] 23 Gigaspora_margarita_GBYF01010756, [13] 24 Gigaspora_margarita_GBYF01025162, [14] 25 Gigaspora_margarita_GBYF01016789, [15] 5 'Mollicutes sp. DhMRE_0015_SB', [16] 10 'Mollicutes sp. DhMRE_0016_SB', [17] 6 'Mollicutes sp. DhMRE_0018_SB', [18] 7 'Mollicutes sp. DhMRE_0019_SB', [19] 8 'Mollicutes sp. DhMRE_0032_SA', [20] 9 'Mollicutes sp. DhMRE_0522_SA', [21] 34 'Laccaria bicolor XP_001881657', [22] 1 Lotus_japonicus_AFK35981, [23] 2 Lotus_japonicus_AFK43720, [24] 37 'Maylandia zebra XP_004572988', [25] 44 'Moniliophthora roreri XP_007845326', [26] 39 'Neolamprologus brichardi XP_006807521', [27] 42 'Phanerochaete carnosa XP_007396574', [28] 40 'Phanerochaete carnosa XP_007393886', [29] 41 'Phanerochaete carnosa XP_007393925', [30] 43 'Phanerochaete carnosa XP_007402240', [31] 4 Rhizoctonia_solani_CCO30892, [32] 11 Rhizophagus_irregularis_ESA07576, [33] 12 Rhizophagus_irregularis_ESA09071, [34] 13 Rhizophagus_irregularis_ESA09278, [35] 14 Rhizophagus_irregularis_ESA16792, [36] 15 Rhizophagus_irregularis_ESA17559, [37] 16 Rhizophagus_irregularis_ESA20877, [38] 17 Rhizophagus_irregularis_EXX63813, [39] 18 Rhizophagus_irregularis_EXX67387, [40] 19 Rhizophagus_irregularis_EXX72584, [41] 20 Rhizophagus_irregularis_EXX74001, [42] 21 Rhizophagus_irregularis_EXX77776, [43] 30 Stachybotrys_chlorohalonata_KFA66904; TREE Fig._S6 = ((43:0.00000093904650884574,(40:0.07371215416546391,(41:0.2792284268544909,((4:0.8409332965006087,(3:0.6629437975205906,44:0.29386790740240964):0.057470844979943016):0.05113359113978794,((29:0.32320143339011737,42:0.3030386824314931):0.06550455978423292,(33:0.45192748316736125,((27:0.640325391897843,28:0.6459983747713373):0.15547359676268463,(34:0.8148097438235264,(30:0.4827310448673625,32:0.9524663784187284):0.1718640491675433):0.09539068259600061):0.10662097905997434):0.09084281033698295):0.0570415175166073):0.2939708175946839):0.08648341313976894):0.07106784419781785):1.2678050101317722,(((38:0.5949169979996234,(37:0.05008726933618171,39:0.055750734236443625):0.25541593296060594):0.47529424380886864,((1:0.005295470020616724,2:0.02067572706896203):0.23604934178814446,(31:0.101170098491867,(22:0.3088611465060458,26:0.104098072411353):0.021375920404081563):0.12334830223646673):0.3951097643500004):0.7993359487005512,((5:0.6801889426006879,25:0.4615334388208537):0.024907145740296517,(16:0.49379342794132913,(((19:0.33631431851040733,(21:0.12830352269530831,(14:0.00000093904650884574,20:0.00000093904650884574):0.2237099580154364):0.057657322195097095):0.44991598531200466,(23:0.41929727250845533,(13:0.3861675406645782,(8:0.6053038981931997,(7:0.296584655113355,9:0.8166572669128286):0.08325423784731914):0.11590402607578022):0.022783210511367443):0.06499183888461864):0.1101285191982622,((24:0.4674113679648945,(35:0.4369675081149278,36:0.45566330439434327):0.6997308876719344):0.13963348850879725,((11:0.4723710812895317,(6:0.6034896132691994,10:0.22054882610635967):0.10538274196287802):0.10342029323996783,(17:0.37945617429284584,(12:0.02204039879454136,(15:0.00000093904650884574,18:0.00000093904650884574):0.031238446507702838):0.28563634152596346):0.11422539332656136):0.05468963299791723):0.05388423239977957):0.12588234137822374):0.09736679655010966):0.6539256685752234):1.2678050101317722); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 240; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 240; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 240; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1433927515000; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6766660233693426826; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 723756298761329546; mqVersion 302; checksumv 0 3 2358919495 null getNumChars 240 numChars 240 getNumTaxa 44 numTaxa 44 short false bits 1048575 states 1048575 sumSquaresStatesOnly 6.2747102012653E13 sumSquares 6.2747102012653E13 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 267; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1680 938; setLocation -4 -4; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #6766660233693426826 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1573.1433926896875.9196377947840723987; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1413 866; setLocation -4 -4; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.ornamental.CircularTree.CircularTree; tell It; setEdgeWidth 6; getEmployee #mesquite.ornamental.NodeLocsCircular.NodeLocsCircular; tell It; branchLengthsToggle off; toggleScale on; endTell; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '((31:0.00000093904650884574,(29:0.07371215416546391,(30:0.2792284268544909,((32:0.8409332965006087,(11:0.6629437975205906,26:0.29386790740240964):0.057470844979943016):0.05113359113978794,((12:0.32320143339011737,28:0.3030386824314931):0.06550455978423292,(5:0.45192748316736125,((1:0.640325391897843,2:0.6459983747713373):0.15547359676268463,(22:0.8148097438235264,(44:0.4827310448673625,6:0.9524663784187284):0.1718640491675433):0.09539068259600061):0.10662097905997434):0.09084281033698295):0.0570415175166073):0.2939708175946839):0.08648341313976894):0.07106784419781785):1.2678050101317722,(((9:0.5949169979996234,(25:0.05008726933618171,27:0.055750734236443625):0.25541593296060594):0.47529424380886864,((23:0.005295470020616724,24:0.02067572706896203):0.23604934178814446,(3:0.101170098491867,(10:0.3088611465060458,4:0.104098072411353):0.021375920404081563):0.12334830223646673):0.3951097643500004):0.7993359487005512,((16:0.6801889426006879,15:0.4615334388208537):0.024907145740296517,(38:0.49379342794132913,(((41:0.33631431851040733,(43:0.12830352269530831,(36:0.00000093904650884574,42:0.00000093904650884574):0.2237099580154364):0.057657322195097095):0.44991598531200466,(13:0.41929727250845533,(35:0.3861675406645782,(20:0.6053038981931997,(19:0.296584655113355,21:0.8166572669128286):0.08325423784731914):0.11590402607578022):0.022783210511367443):0.06499183888461864):0.1101285191982622,((14:0.4674113679648945,(7:0.4369675081149278,8:0.45566330439434327):0.6997308876719344):0.13963348850879725,((33:0.4723710812895317,(18:0.6034896132691994,17:0.22054882610635967):0.10538274196287802):0.10342029323996783,(39:0.37945617429284584,(34:0.02204039879454136,(37:0.00000093904650884574,40:0.00000093904650884574):0.031238446507702838):0.28563634152596346):0.11422539332656136):0.05468963299791723):0.05388423239977957):0.12588234137822374):0.09736679655010966):0.6539256685752234):1.2678050101317722)<> ;'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #723756298761329546 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 296; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1413 866; setLocation -4 -4; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;