#NEXUS
[written Wed Jun 10 11:11:54 CEST 2015 by Mesquite  version 3.02 (build 681) at AG-SCHUESSLER-HP7900_1/10.153.191.186]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=44;
	TAXLABELS
		Botryobasidium_botryosum_KDQ08310 Botryobasidium_botryosum_KDQ08572 'Citrus clementina XP_006441584' Citrus_sinensis_KDO39076 'Coprinopsis cinerea XP_001839086' 'Coprinopsis cinerea okayama XP_001834263' 'Dictyostelium fasciculatum XP_004363268' 'Dictyostelium fasciculatum XP_004363270' 'Dictyostelium fasciculatum XP_005951667' Erythranthe_guttata_EYU22765 Fibroporia_radiculosa_CCM03857 Galerina_marginata_KDR76127 Gigaspora_margarita_GBYF01010756 Gigaspora_margarita_GBYF01025162 Gigaspora_margarita_GBYF01016789 'Mollicutes sp. DhMRE_0015_SB' 'Mollicutes sp. DhMRE_0016_SB' 'Mollicutes  sp. DhMRE_0018_SB' 'Mollicutes sp. DhMRE_0019_SB' 'Mollicutes sp. DhMRE_0032_SA' 'Mollicutes  sp. DhMRE_0522_SA' 'Laccaria bicolor XP_001881657' Lotus_japonicus_AFK35981 Lotus_japonicus_AFK43720 'Maylandia zebra XP_004572988' 'Moniliophthora roreri XP_007845326' 'Neolamprologus brichardi XP_006807521' 'Phanerochaete carnosa  XP_007396574' 'Phanerochaete carnosa XP_007393886' 'Phanerochaete carnosa XP_007393925' 'Phanerochaete carnosa XP_007402240' Rhizoctonia_solani_CCO30892 Rhizophagus_irregularis_ESA07576 Rhizophagus_irregularis_ESA09071 Rhizophagus_irregularis_ESA09278 Rhizophagus_irregularis_ESA16792 Rhizophagus_irregularis_ESA17559 Rhizophagus_irregularis_ESA20877 Rhizophagus_irregularis_EXX63813 Rhizophagus_irregularis_EXX67387 Rhizophagus_irregularis_EXX72584 Rhizophagus_irregularis_EXX74001 Rhizophagus_irregularis_EXX77776 Stachybotrys_chlorohalonata_KFA66904 
	;

END;


BEGIN CHARACTERS;
	TITLE  Endobacteria_in_arbuscular_mycorrhizal_fungi_AIG_domain_of_the_proteins_described_in_the_DhMre_genome_draft;
	DIMENSIONS  NCHAR=240;
	FORMAT DATATYPE = Protein GAP = - MISSING = ?;
	MATRIX
	Botryobasidium_botryosum_KDQ08310         RDIVIVVMGSTGAGKSSFINLVSG-SN-----LDVGEALRSQTTLPQ-PAYFELFG-RRVVLIDTPGFDDTE--RNDAEVLDVI-GKYLSVLHSQGLDITAVVYLHRISD--NRVAGSALNNL-RMCQAICGD----SAIKNLIVCTTMWEQVLPGVGEAREKELLETEQFWGRAIQRGARSLR--ATFGY------DPV-VLAIQHELVEEGKLLMETTAGVLVDAA-IRRLQAKH---
	Botryobasidium_botryosum_KDQ08572         SDALIAVIGPTGAGKTTLVNRMSG-VN-----FKIGYGLQSETQQIQTAKC-TLDG-QRVHLIDTPGFDNTE--MADGDVLYLI-GTYLADIYRSGRQLTGILYLHSINS--NQAG---IQNI-RILEKLCGD----NAMASVTICTTMWNNVSEHVGAEREQELAAR--LWNNMISKGATIRRVL-----------KPV-TLDIQREIVDEGKSVFNTKAAWALGCR------------
	'Citrus clementina XP_006441584'          GERTVVLLGRTGNGKSATGNSILGRRA-----FKASAGSSAITKTCE-MKTTVLDG-QVVNVIDTPGLFDS--SAESEYVNKEI-AKCIGMAK-DGIHA-----VLLVFSVRSRFSQEEEAAV-HRLQTLFGK----KIFDYMIVIFTGGDDLEDNEKTLEDYLGL-ECPKP---LKEILQLCD--RWVLFDN------------------------KTKYEAKRTEQVQQLLSLVN---
	Citrus_sinensis_KDO39076                  GERNLVLVGRTGNGKSATANSILGKRA-----FKSKAGSSGVTKTCE-MQRTMLDG-QVVNVIDTPGLFDS--SADSEFVSKEI-VKCIGMTK-DGIHA-----VLVVFSVRNRFSEEEGAAI-HILESLFGK----KISDYMIVVFTGGDELEDNDETLEDYLGR-ECPKP---LKEILQLCD--RCVLFDN------------------------KTKDTAKRTEQVGKLLSLVN---
	'Coprinopsis cinerea XP_001839086'        DTITIAVMGATGSGKSTFINLVSG-SS-----LPTSSGLRSCTASIHETPPFELDG-KKIVLIDTPGFDDTT--KSDTEILKLI-ADHLANSYRQNNHLSGLLFLHRISD--TRIGGISAKSF-RTLHTLCGK----PALPNLIILTTMWDITDFSLAEAREHELASEEMFFKPALEKGARMMR--QVVWNLERTGGRRV-VLQIQREVVDEGKDVSDTAAAEELDRQ-MKELKEKQ---
	'Coprinopsis cinerea okayama XP_001834263' STKLIALMGATGSGKSSMINAIVGKDV-----AEVGHSLESATAEVQ-QYTFSYRG-AEIRIIDTPGFNDEEGSLSDLDILNMI-AAFMHKEYEDDFKFSGIIYLHNISA--PKVDRMGIRNM-NVFKGLCGA----DFMKNVVIATTCWDLVEKGEGEDNETELQEGEGLLKDFLDGGATFVR--HVLSL------DPS-FVQMQEEMA-HVPCVAETTAGGELKEE--------Y---
	'Dictyostelium fasciculatum XP_004363268' VKRTVLLIGSTGKGKSTLASVISSTSHE----FKSKDASVGVTKECK-KKLFKKKG-LHLTLLDSPGLHDP--NISHDSIFNNI-AETCYALRGTGINQ-----IIFVTR--GRFDQNEIDVL-VTMIDALFGGDMD-YLKYTTIVRTHSDFYQNKQKCDSDLEKLKKIDPM---VGDIIDACN---VLYVDNS-----------------MTS---DNKRSVDSKRSREIVLNHLI---
	'Dictyostelium fasciculatum XP_004363270' -KRTILF--------------VVSHSNE----FHEMNSSTGCTQKPK-KKIFKAKGPLELSVVDTVGLADP--QQENEKIFRNI-GETCHSLRTTGINQ-----IIFVTK--DRFDTCELACF-QLVIKTLFAGDGDKCLKHTTIIRTGTTFFKDEAKCKKDLEGLKNSDPF---MKEMIEKCN---FIYVNNP-------------------P---DNAATREESRTK--ILNHLI---
	'Dictyostelium fasciculatum XP_005951667' KDLRIVLVGKTGVGKSAAGNTILGRDA-----FKSELTSSSVTEVCE-KKMGEFGG-LKLAVIDTPGLGDT--KQSEEQVRREI-ARCMSFAA-PGPHV-----FLVVLQP-TRFTKEEQKSV-KIIQTIFGK----EASRYTMVLFTHGDELKKRHSSIEKLINE-N-PD----LRRFISQCH--NHHVFDN------------------------DDRDPS----QLKELLLKIS---
	Erythranthe_guttata_EYU22765              SSRTVVLVGKTGNGKSATGNSILGTNK-----FKSKCSSGGVTRTCE-IQRTILDG-EILNVIDTPGLFD----AEHEFIGKEI-AKCISMAK-HGIHA-----VILVLSVRSRFSQEEEAAV-ETLRKLFSS----KISNYMIVVFTGGDDLDENDETLDDYLGRDDCPQS---LKETLRMCG--RCVLFDN------------------------RTKDEGKKYVQQRKLLSLVN---
	Fibroporia_radiculosa_CCM03857            EPKLIIIMGATGSGKSTFANLATG-AD-----FRVGHGLQSCTETIQ-QETLQLDN-EVVTIIDTPGFDDTE--RPQADVLREI-ADFLKAEYENKTKVAGVVFTYRISD--HRMSGVSLENY-RLFRKICGD----MAMENVAVVTTMWTSSNQTVGMRREKELSTN--FFKDAIENNARMYR--DLMGR------KSG-ALRVQVELVDQHKSIPETEAGTQLQSA-LDEEEKRH---
	Galerina_marginata_KDR76127               LDVNIAVMGATGSGKTTFVNLASS-SN-----LSVGHGLQSCTSRVQVSSQFELDG-RSVTLIDTPGFDDTT--TSDMDILRQI-SEFLSKTYKDGKRLSGVLYIHRISD--FRVGGISRRNF-KMFRELCGE----RTLVNVIIVTNMWGDVSKEIGEQREDQLATQDIFFKPTLEKGARLLR--HIIDN------HPL-PLQIQQEIVEQARDIGETSAGIELQNEFIIAEAEKH---
	Gigaspora_margarita_GBYF01010756          EIKNLLIVGRTGNGKSTLANVLSGTNE-----FKESEKSVSETKYFQ-DEYFTHKG-NVYRVVDTIGVGDT--KLSKNDILLRI-AEAVYTMK-EGISQ-----IFFVVG--RRFTKEETETF-ELLKKAIFE---SNIIKHTTIIRTNFTNFRNPDKCKIDRQELIEENKF---LAEIINSC---GIIHIDAPSIEVD------------CERRLQFNKEDRDTSRIK--LLDHL----
	Gigaspora_margarita_GBYF01025162          EIRNILVIGCTGNGKSTLCNVLVNKDNELKEIFEESDGSTAKTRNIQ-SEVFKYKG-IKYRIIDTIGFGDT--KLKPREVILSI-AESYKKIE-NGLTQ-----IFFVTE---RFTLQAVEVY-EILKKVLFD---ENITDYITIVKTKFSRFKYKSECEKDIQKLEKDSKK---IHGVIESCN--RIIYVDNPQINEHIYED--------DIAVFESNKKKREESRKI--LLNHL----
	Gigaspora_margarita_GBYF01016789          QVRNIMLIGRTGNGKSTLANVLLNKNDEFEEVFKESSGSISGTKDIQ-NEVLKVKY-VKYRIIDTVGLGEN--NITIQEMLKKI-AKTIPFVD-EGLHR-----IFFVIR--NRFTENEKKAY--LLKESIFD---NEVVKYTTIINPWFSDFENETACKDDGLKIKNENQE---LADFIKS----RIIHVNTLPLKGS-------------SYIVNAHKKARKASRQK--LLAHL----
	'Mollicutes sp. DhMRE_0015_SB'            NTRNILLIGRTGSGKSTLANVLLNSHGNFEEIFKESAGSIGKTRDIQ-IAEFEENR-INYRIVDTAGFGTA--GFVAEEFLCQLDGNIINHLNKEGF-Q-----ILFVVG--ERFSEEEIKTF-NLLNSVIFD---NDVVNCITIVKTKFPDFEKKQAYEEDCRSIRND------LLNILED----KIIHIDNPPM----------------------------TSHYV--EIAHLG---
	'Mollicutes sp. DhMRE_0016_SB'            NQRNILLIGRTGKGKSTLANVLTNTNK-----FKESEFAVSETKNIQ-IGQFKHND-IKYQVIDTVGIGDT--KLSEQEVLQKI-AEAVYAVR-YGLSQ-----VLLVTS--GRFTQEERIIYEELLKKAIFD---QDIAKYTTIVRTNFPNFRNENRCREDIERMKKNNAE---LAEIITSC---KLIHVNNPPLDID------------DPEELKIYQKAREKSRLI--LLEHL----
	'Mollicutes  sp. DhMRE_0018_SB'           MFKTIILLGKTGSGKSALSNVLVDKDNSFKEIFKESSLSVSQTRNIQ-SEKFEGDD-INYLIIDTPGIGDT--KLAEHEILDII-AGAVYLSK-DGVKQ-----VFFVIN--SKFSQYETIVY-NLLKKTIFD---DNILDYTTIVRTNFPNFRTKKESEEDINLMTKESNE---LAEIISSCQ--KIIHVDNPPLSDD------------------FNKSMRIKSKER--LLKYLQ---
	'Mollicutes sp. DhMRE_0019_SB'            DVRNILIVGITGNGKSTLANALSNTEQ-----FKEGGYSTSTTKNFQVSDIFEWKG-KKYRVIDNVGFGDT-SKLSERDNLFKI-GEGIHSTK-EGINQ-----VLFIFQ--GRFTSEQSLAY-KTFKDFISE---SQITKFTTLVRTNFSDFKIKEICQKDQQALFNENEKSGELKEIISFC---SIIHVDNPSTNISAADDEDEKEREERERKLNSNKKIRTESRER--VLNYLV---
	'Mollicutes sp. DhMRE_0032_SA'            MVRNILIVGITGSGKSALANVLTGTND-----FKEKESGVSVTREFQ-KSSNPFQL-ANYYVIDNVGFGDNRSELSKEVILYEV-AKAIYFIREEGINQ-----VFFVFS--EKFSKADVGNF-NLFKGLILE---SGITKFTTLVRTNFKKFEDSQKCKEDQQALLETNKE---IEEIIESCN--KILHVDNPTLDIAPADDEDDEDKIERENKINENGSKRGASREK--LLKHLGD--
	'Mollicutes  sp. DhMRE_0522_SA'           TTRNILIVGWTGSGKSTLANVLSSSKD-----FIESNKSTPETKWGRPSSEFEWKG-NYYCVIDNIGFGDT--EVNEKEELIRI-GKAISEVS-QGLSH-----VLFVYK--KRFSDKEKEAFGKLNALKITE-------SLITIVRTNFDNFKSKERRENDIKSLKEEDLG---IKQTINSCR---LLHVNN------------------------NNDKNRNTSREI--VLDHLH---
	'Laccaria bicolor XP_001881657'           KSVTVLLMGQTGTGKSSFIRLLTGNKD-----VKIGKSIEPETSDISTFDYAQNDG-LEVSLVDTPGFDDAH--MSDSKLLQDL-IEFLLKR-RNAKTVNGLIYLHRISD--VRFGGTATRNL-RMFSRLCGP----DAMKNVVILTTRWDETRRDVAEKTEADLTNS--HFKEFVNNGAKVLR--SIMDL------PPIGEIKVVNEIV-GGRSLAETDAGRELDSQ-LTQLKTQH---
	Lotus_japonicus_AFK35981                  EVRTVVLVGRTGNGKSATGNSILGKKV-----FKSRASSVGVTSSCE-SHTIELDG-QTVNVIDTPGLFDI--SAGSDFVGKEI-VNCINLAK-DGIHA-----IIVVFSVRTRFSQEEATAL-RSLQTLFGD----KIYDYTVGVFTGGDELEEEDQTLEDYLGC-DCPEP---LKDLLSLCE--RRLLFDN------------------------KTKDERKRSEQVQQLFSFVN---
	Lotus_japonicus_AFK43720                  EVRTVVLVGRTGNGKSATGNSILGKKV-----FKSRASSVGVTSSCE-SHTIELDG-QTANVIDTPRLCDI--SAGSDFVGKEI-VNCINLAK-DGIHA-----IIVVFSVRTRFSQEEATAL-RSLQTLFGD----KIYDYTVVVFTGGDELEEEDQALEDYLGC-DCPEP---LKDLLSLCE--RRLLFDN------------------------KTKDERKRSEQVQQLFSFVN---
	'Maylandia zebra XP_004572988'            PDLRIVMIGKTGVGKSAVGNTILGKKH-----FKSLPSSESVTETCQ-TGETQWEG-RNISVIDTPGILDT--EKSAEMIKKEI-VRCVEVSS-PGPHV-----FLLVLQV-GRFTKEEKNSV-KALQALFAP----KAQHYMIVLFTHGDDLEDQEITIQKYVRE-AKPE----LRQVIHSCG--RFHVFNN------------------------RSKDRK----QVEELMKKID---
	'Moniliophthora roreri XP_007845326'      KEAVIAIMGATGSGKTTFINAVSG-GN-----LRVGGDLESCTSTIELSPTFDLRG-RQVTLIDTPGFDDTN--RSDADILNMI-AVGLASMYENNQMLAGVIYLHRISD--IRMGGISRRNF-KMFRKLCGD----NTLKNVVIVTNMWGLVDKDVGVAREAQLKQEDKFFKPALEKGAQIVR--YLIER------KPL-PLQIQIELVDEQKTMPQTAAGAELNRE-LLEQSRKH---
	'Neolamprologus brichardi XP_006807521'   PDLRIVIIGKTGVGKSAVGNTILGKKH-----FESRYCSRSVTETCQ-TGETQWEG-RKISVIDTPGILDT--EISAEMIKREI-VRCVEVSS-PGPHV-----FLLVLQV-GRFTKEEKNSV-EALQELFGP----KAQHYMIVLFTHGDDLEDQETTIQQYVRE-NEPE----VRQVIHSCG--RFHVFNN------------------------RSKDRK----QVEELMKKID---
	'Phanerochaete carnosa  XP_007396574'     ------VMGATGAGKSTFVNLISG-SQ-----LQVGEGLRSCTPEVQTSKPFELFG-RQVTLIDTPGFDDTL--KTDTEILKHI-ASFLANAYRENKKLSGVIYMHRISD--FKVGGISRRNF-GMFRSLCGE----TTLKNVIIVTNMWSEVGEQKGAARERELAADNALFKPVIDKGARMMR--VLVEN------QPL-ALQIQREIVDQRKTLEQTTA-------------------
	'Phanerochaete carnosa XP_007393886'      DSATIVVMGATGAGKSTFINLVSN-SK-----FEVGYGLESCTSEVDVAAPFMLDG-KPVTLIDTPGFDDTV--KTEAEILRLI-AEFLSVTYKQGRTLHGIVFLQRITD--TRMGGVARKNF-RLFRKLCGD----DTLRNVIIATNMWGNVEPALGASREREMAESDLFFKPALEKGAHMVR--EIIGF------PPA-PLQIQRETVDQRKPLAETGAGQDLRAD-LEQQAGQH---
	'Phanerochaete carnosa XP_007393925'      DTVTIAIMGATGSGKSTFVNRASN-SR-----LEESGSLESCTDNVVVAEPFLLDG-KVVTLIDTPGFDDTT--KTEAEVLGLI-SAFLSATYKQGRTLNGVIYMQNITI--HRMGGMARKNF-RLFRKLCGD----ATLKNVLIATNMWSDVNPTLAAQREREMAEKDIFFKSAIEKGARMVR--EIMGF------TPA-PLQIQRETVDENKPLPETDAGQDVKAG-LEEQLTRY---
	'Phanerochaete carnosa XP_007402240'      DSATIVVMGATGAGKSTFINLVSS-SK-----FKVGYGLESCTSEVEVAAPFMLDG-KTVTLIDTPGFDDTI--KTEAEILRLI-ADFLAVTYKQGRTLNGVIFLQRVTD--TRMGGVARKNF-RLFRKLCGD----ETLKNVVIVTNMWSNVEPGVGAEREREMAGSDLFFKPALDKGAHMVR--EIVGF------PPA-PLQIQRETVDEHKPLAETGAGQDLTAE-LERQAGRH---
	Rhizoctonia_solani_CCO30892               GVSIIALFGATGAGKSSFANLASGRDD-----LTVGHSTRSCTQNVYQTVPFKVDG-RPVVLIDCPGFDDSH--SSDAEILKRI-AAFLTFTYEKNINLTGIIYLHRITD--NRFGGASGSNF-RMFRKMCGT----DACQNVLIVFGMWSYPPTEEQIAREADLINGEHAFKGILAEGAKTAR--RLIGH------KPV-PLELPRQ-IHGGMKLEETAAGRAVAGE-LGEQLRQQ---
	Rhizophagus_irregularis_ESA07576          ETRNILLIGRTGNGKSALANVISGTSK-----FKESEFVNSETKDVQ-IEIVDIDG-INYKIVDTVGLGDT--ELTMQQVLNKL-ADASHVLR-KGLSQ-----VLFVTS--GRFTEEELIAF-DLLRTVLFD---ENIVNYTTIVRTKFPGFRKPEKCEEDKKRM--ENDK---RTEVVKLC---KFIHVNN------------------LSEDEDPEQKAREDSR-I--ILRTLL---
	Rhizophagus_irregularis_ESA09071          GVRNILLIGRTGNGKSALANVISGTNK-----FREIEDSVSETKELE-LETFGYQG-IKYRVIDTVGIGDT--KLKSKDVLNRV-AKACYEVR-EGLNQ-----IFFVIG--GRITEEELETY-NLLKQIIFN---EDIYSYTTIVRTRFTDFEDERRCEEDKEKISQENEK---LAELIRIC---KLIHVDNPPV---------------KGRSAATNKEIREVSRER--LLKHLI---
	Rhizophagus_irregularis_ESA09278          EVRNILIIGRTGNGKSTLANVLSNSWN-----FLESSGSISKTKNFQ-SETFEWGE-TKYRVFDTIGIGDT--QLSKATILYRI-AEGINFME-GGINQ-----VLFIVG--GRFTEEEVNAF-NLFRLVLHE---SRILEYTTLVRTKFSRFKNSEKCREDNEELLRENE------EIVNSF---KVIYVDNPSIDTD------------DEEERRINGNKRDQSREI--ILNYLK---
	Rhizophagus_irregularis_ESA16792          INKNVIIIGHTGGGKSTLCNVLTDSDE-----FDESGNSFSVTNSFQ-KKNFQWMG-KCFNVVDTIGVGDT--KLSTRRVLYKI-LDGIFSIP-EGISQ-----ILFVVD--GRFTAEEVKIF-NLLKGSIFDIFKTHILYYVTIVRTKFRYFNDKDRCDADKEQLHNENDI---IAEIVKSCR---VIYVDNPPIYIEIVDEE-------DVETVVTNERIRRKSRKI--LLNHLN---
	Rhizophagus_irregularis_ESA17559          EVRNILLIGRTGNGKSALANVISGTNK-----FREIEDSVSETKELE-LEMFGYQG-IKYRVIDTVGIGDT--KLKSKDVLNKV-AKACYEVR-EGLNQ-----IFLVIG--GRITEEEIETY-NLLKQVIFN---EDIYNYTTIVRTRFTDFEDERRCEEDKEKISQENEK---LTELIREC---KLIHVDNPPV---------------KGRSATTNKEIREVSRER--LLKHLI---
	Rhizophagus_irregularis_ESA20877          EVRNILLIGRTGGGKSTLGNVLINNND-FEEVFKESDGSVSATKNID-EKLVEIDG-VEYRIIDTIGIGDT--KLTAQGVLTRL-AEIANRVKSEGLNH-----ILFVTK--GRFTKEEVEAY-DLLSSIIFD---SEVLRYTTIVRTNFNGFEDREKCDNDRAALRMENGG---FLDAVD------IVYVNNPSIEVF----------------GDMAKKIRESSRKR--LLTYL----
	Rhizophagus_irregularis_EXX63813          ETRNILIIGRTGNGKSTLENVLTNSEK-----FNEGSGTISTTKELQ-KEDFEIEK-VQYRVVDTIGIGDT--QLAQREVLNRI-AEACHEVG-KGLNQ-----IFFVLG--RKFTEEELEAY-NILREIIFD---ESITCYTTIVRTNFPNFDSEEKCKEDREKLNQESPK---LAELVRTC---KLIYVDNPPTNIEVGKNISEKQKNRKLKEIETNREKREESRDV--LIKHLI---
	Rhizophagus_irregularis_EXX67387          EVRNILLIGRTGNGKSALANVISGTNK-----FREIEDSVSETKELE-LEMFGYQG-IKYRVIDTVGIGDT--KLKSKDVLNKV-AKACYEVR-EGLNQ-----IFLVIG--GRITEEEIETY-NLLKQVIFN---EDIYNYTTIVRTRFTDFEDERRCEEDKEKISQENEK---LTELIREC---KLIHVDNPPV---------------KGRSATTNKEIREVSRER--LLKHLI---
	Rhizophagus_irregularis_EXX72584          I-KNIVIVGCTDVGKSTLANIITGSDY-----FSKSAYTASKTINFK-KKHFKWNG-KYFCIVDAIG---P--KLTTGNTLLKS-VEEIFSML-EGISQ-----ILFVID--GRFTTEEIKIF-NLLKGLIINIFEINILEYVTIVRTKFSNFKKKKECEADKNQLHNENES---ISEIVKSCR---VIHVDNPSVNIQITDDD-------DQYTVNINKKIRERSRKI--MLDYLD---
	Rhizophagus_irregularis_EXX74001          INKNVIIIGHTGGGKSTLCNVLTDSDE-----FDESGNSFSVTNSFQ-KKNFQWMG-KCFNVVDTIGVGDT--KLSTRRVLYKI-LDGIFSIP-EGISQ-----ILFVVD--GRFTAEEVKIF-NLLKGSIFDIFKTHILYYVTIVRTKFRYFNDKDRCDADKEQLHNENDI---IAEIVKSCR---VIYVDNPPIYIEIVDEE-------DVETVVTNERIRRKSRKI--LLNHLN---
	Rhizophagus_irregularis_EXX77776          IMKNLIIVGRIGGGKSTLFNILTESED-----FEESGRSISVIKNFQ-KKDFEWHG-KSFSVVDTIGVGDT--QLSTKKVLYKI-LDGIFSIP-EGISQ-----ILFVID--ERFTTEEVKIF-NLLKGSIFDIFGIHIFKYVTIVRTKFSNFKNKSECEADKEQLHNENEN---IAKIVKSCR---IVYVDNPPTNFQIFDED-------DQETVATNRRKRERSREI--LLNYLD---
	Stachybotrys_chlorohalonata_KFA66904      KDVVIAVMGMTGSGKTTFISKVTGRSD-----LKIGHDLTSCTRDIEVIET-KIGD-TTVRFVDTPGFSDTH--LSDTEVLQMI-ADYLATAYKNDMKLSGIIYLHPISD--TRITHHATKNL-EMFRKLTGE----KNLKNVVLTTSMWDKVSPEEGARREAELKSK--FWKVFVALGANVTR--MLMGN------HPF-YLQLQEEMGRGNKLLRDTSAGRELMVE-IGRMKKEH---

;


END;

BEGIN TREES;
	Title Endobacteria_in_arbuscular_mycorrhizal_fungi_AIG_domain_of_the_proteins_described_in_the_DhMre_genome_draft;
	LINK Taxa = Taxa;
	TRANSLATE
[0] 		27 Botryobasidium_botryosum_KDQ08310,
[1] 		28 Botryobasidium_botryosum_KDQ08572,
[2] 		31 'Citrus clementina XP_006441584',
[3] 		26 Citrus_sinensis_KDO39076,
[4] 		33 'Coprinopsis cinerea XP_001839086',
[5] 		32 'Coprinopsis cinerea okayama XP_001834263',
[6] 		35 'Dictyostelium fasciculatum XP_004363268',
[7] 		36 'Dictyostelium fasciculatum XP_004363270',
[8] 		38 'Dictyostelium fasciculatum XP_005951667',
[9] 		22 Erythranthe_guttata_EYU22765,
[10] 		3 Fibroporia_radiculosa_CCM03857,
[11] 		29 Galerina_marginata_KDR76127,
[12] 		23 Gigaspora_margarita_GBYF01010756,
[13] 		24 Gigaspora_margarita_GBYF01025162,
[14] 		25 Gigaspora_margarita_GBYF01016789,
[15] 		5 'Mollicutes sp. DhMRE_0015_SB',
[16] 		10 'Mollicutes sp. DhMRE_0016_SB',
[17] 		6 'Mollicutes  sp. DhMRE_0018_SB',
[18] 		7 'Mollicutes sp. DhMRE_0019_SB',
[19] 		8 'Mollicutes sp. DhMRE_0032_SA',
[20] 		9 'Mollicutes  sp. DhMRE_0522_SA',
[21] 		34 'Laccaria bicolor XP_001881657',
[22] 		1 Lotus_japonicus_AFK35981,
[23] 		2 Lotus_japonicus_AFK43720,
[24] 		37 'Maylandia zebra XP_004572988',
[25] 		44 'Moniliophthora roreri XP_007845326',
[26] 		39 'Neolamprologus brichardi XP_006807521',
[27] 		42 'Phanerochaete carnosa  XP_007396574',
[28] 		40 'Phanerochaete carnosa XP_007393886',
[29] 		41 'Phanerochaete carnosa XP_007393925',
[30] 		43 'Phanerochaete carnosa XP_007402240',
[31] 		4 Rhizoctonia_solani_CCO30892,
[32] 		11 Rhizophagus_irregularis_ESA07576,
[33] 		12 Rhizophagus_irregularis_ESA09071,
[34] 		13 Rhizophagus_irregularis_ESA09278,
[35] 		14 Rhizophagus_irregularis_ESA16792,
[36] 		15 Rhizophagus_irregularis_ESA17559,
[37] 		16 Rhizophagus_irregularis_ESA20877,
[38] 		17 Rhizophagus_irregularis_EXX63813,
[39] 		18 Rhizophagus_irregularis_EXX67387,
[40] 		19 Rhizophagus_irregularis_EXX72584,
[41] 		20 Rhizophagus_irregularis_EXX74001,
[42] 		21 Rhizophagus_irregularis_EXX77776,
[43] 		30 Stachybotrys_chlorohalonata_KFA66904;
	TREE Fig._S6 = ((43:0.00000093904650884574,(40:0.07371215416546391,(41:0.2792284268544909,((4:0.8409332965006087,(3:0.6629437975205906,44:0.29386790740240964):0.057470844979943016):0.05113359113978794,((29:0.32320143339011737,42:0.3030386824314931):0.06550455978423292,(33:0.45192748316736125,((27:0.640325391897843,28:0.6459983747713373):0.15547359676268463,(34:0.8148097438235264,(30:0.4827310448673625,32:0.9524663784187284):0.1718640491675433):0.09539068259600061):0.10662097905997434):0.09084281033698295):0.0570415175166073):0.2939708175946839):0.08648341313976894):0.07106784419781785):1.2678050101317722,(((38:0.5949169979996234,(37:0.05008726933618171,39:0.055750734236443625):0.25541593296060594):0.47529424380886864,((1:0.005295470020616724,2:0.02067572706896203):0.23604934178814446,(31:0.101170098491867,(22:0.3088611465060458,26:0.104098072411353):0.021375920404081563):0.12334830223646673):0.3951097643500004):0.7993359487005512,((5:0.6801889426006879,25:0.4615334388208537):0.024907145740296517,(16:0.49379342794132913,(((19:0.33631431851040733,(21:0.12830352269530831,(14:0.00000093904650884574,20:0.00000093904650884574):0.2237099580154364):0.057657322195097095):0.44991598531200466,(23:0.41929727250845533,(13:0.3861675406645782,(8:0.6053038981931997,(7:0.296584655113355,9:0.8166572669128286):0.08325423784731914):0.11590402607578022):0.022783210511367443):0.06499183888461864):0.1101285191982622,((24:0.4674113679648945,(35:0.4369675081149278,36:0.45566330439434327):0.6997308876719344):0.13963348850879725,((11:0.4723710812895317,(6:0.6034896132691994,10:0.22054882610635967):0.10538274196287802):0.10342029323996783,(17:0.37945617429284584,(12:0.02204039879454136,(15:0.00000093904650884574,18:0.00000093904650884574):0.031238446507702838):0.28563634152596346):0.11422539332656136):0.05468963299791723):0.05388423239977957):0.12588234137822374):0.09736679655010966):0.6539256685752234):1.2678050101317722);

END;


BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1 -  240;

END;

BEGIN CODONS;
	CODESET * UNTITLED   =  universal:  1 -  240;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Mk1 (est.)':  1 -  240;
END;

Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		timeSaved 1433927515000;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			setID 0 6766660233693426826;
		endTell;
		getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
		tell It;
			setID 0 723756298761329546;
			mqVersion 302;
			checksumv 0 3 2358919495 null  getNumChars 240 numChars 240 getNumTaxa 44 numTaxa 44   short false   bits 1048575   states 1048575   sumSquaresStatesOnly 6.2747102012653E13 sumSquares 6.2747102012653E13 longCompressibleToShort false usingShortMatrix false   NumFiles 1 NumMatrices 1;
			mqVersion;
		endTell;
		getWindow;
		tell It;
			suppress;
			setResourcesState false false 267;
			setPopoutState 400;
			setExplanationSize 0;
			setAnnotationSize 0;
			setFontIncAnnot 0;
			setFontIncExp 0;
			setSize 1680 938;
			setLocation -4 -4;
			setFont SanSerif;
			setFontSize 10;
			getToolPalette;
			tell It;
			endTell;
			desuppress;
		endTell;
		getEmployee  #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord;
		tell It;
			makeTreeWindow #6766660233693426826  #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker;
			tell It;
				suppressEPCResponse;
				setTreeSource  #mesquite.trees.StoredTrees.StoredTrees;
				tell It;
					setTreeBlock 1;
					toggleUseWeights off;
				endTell;
				setAssignedID 1573.1433926896875.9196377947840723987;
				getTreeWindow;
				tell It;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					setSize 1413 866;
					setLocation -4 -4;
					setFont SanSerif;
					setFontSize 10;
					getToolPalette;
					tell It;
					endTell;
					setActive;
					getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator;
				tell It;
					suppress;
					setTreeDrawer  #mesquite.ornamental.CircularTree.CircularTree;
					tell It;
						setEdgeWidth 6;
						getEmployee #mesquite.ornamental.NodeLocsCircular.NodeLocsCircular;
						tell It;
							branchLengthsToggle off;
							toggleScale on;
						endTell;
					endTell;
					setBackground White;
					setBranchColor Black;
					showNodeNumbers off;
					showBranchColors on;
					labelBranchLengths off;
					centerBrLenLabels on;
					showBrLensUnspecified on;
					showBrLenLabelsOnTerminals on;
					setBrLenLabelColor 0 0 255;
					setNumBrLenDecimals 6;
					desuppress;
					getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames;
					tell It;
						setColor Black;
						toggleColorPartition off;
						toggleColorAssigned on;
						toggleShadePartition off;
						toggleShowFootnotes on;
						toggleNodeLabels on;
						toggleCenterNodeNames off;
						toggleShowNames on;
						namesAngle ?;
					endTell;
				endTell;
					setTreeNumber 1;
					setTree '((31:0.00000093904650884574,(29:0.07371215416546391,(30:0.2792284268544909,((32:0.8409332965006087,(11:0.6629437975205906,26:0.29386790740240964):0.057470844979943016):0.05113359113978794,((12:0.32320143339011737,28:0.3030386824314931):0.06550455978423292,(5:0.45192748316736125,((1:0.640325391897843,2:0.6459983747713373):0.15547359676268463,(22:0.8148097438235264,(44:0.4827310448673625,6:0.9524663784187284):0.1718640491675433):0.09539068259600061):0.10662097905997434):0.09084281033698295):0.0570415175166073):0.2939708175946839):0.08648341313976894):0.07106784419781785):1.2678050101317722,(((9:0.5949169979996234,(25:0.05008726933618171,27:0.055750734236443625):0.25541593296060594):0.47529424380886864,((23:0.005295470020616724,24:0.02067572706896203):0.23604934178814446,(3:0.101170098491867,(10:0.3088611465060458,4:0.104098072411353):0.021375920404081563):0.12334830223646673):0.3951097643500004):0.7993359487005512,((16:0.6801889426006879,15:0.4615334388208537):0.024907145740296517,(38:0.49379342794132913,(((41:0.33631431851040733,(43:0.12830352269530831,(36:0.00000093904650884574,42:0.00000093904650884574):0.2237099580154364):0.057657322195097095):0.44991598531200466,(13:0.41929727250845533,(35:0.3861675406645782,(20:0.6053038981931997,(19:0.296584655113355,21:0.8166572669128286):0.08325423784731914):0.11590402607578022):0.022783210511367443):0.06499183888461864):0.1101285191982622,((14:0.4674113679648945,(7:0.4369675081149278,8:0.45566330439434327):0.6997308876719344):0.13963348850879725,((33:0.4723710812895317,(18:0.6034896132691994,17:0.22054882610635967):0.10538274196287802):0.10342029323996783,(39:0.37945617429284584,(34:0.02204039879454136,(37:0.00000093904650884574,40:0.00000093904650884574):0.031238446507702838):0.28563634152596346):0.11422539332656136):0.05468963299791723):0.05388423239977957):0.12588234137822374):0.09736679655010966):0.6539256685752234):1.2678050101317722)<> <unrooted = on >;';
					setDrawingSizeMode 0;
					toggleLegendFloat on;
					scale 0;
					toggleTextOnTree off;
					showWindow;
				endTell;
				desuppressEPCResponse;
				getEmployee #mesquite.trees.ColorBranches.ColorBranches;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.ornamental.BranchNotes.BranchNotes;
				tell It;
					setAlwaysOn off;
				endTell;
				getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition;
				tell It;
					colorByPartition off;
				endTell;
				getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles;
				tell It;
					setOn on;
					setDigits 4;
					writeAsPercentage off;
					toggleCentred off;
					toggleHorizontal on;
					toggleWhiteEdges on;
					setFontSize 10;
					setOffset 0  0;
				endTell;
				getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings;
				tell It;
					setOn on;
					toggleCentred on;
					toggleHorizontal on;
					setFontSize 10;
					setOffset 0  0;
				endTell;
				getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues;
				tell It;
					panelOpen false;
				endTell;
			endTell;
		endTell;
		getEmployee  #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord;
		tell It;
			showDataWindow #723756298761329546 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker;
			tell It;
				getWindow;
				tell It;
					getTable;
					tell It;
						rowNamesWidth 296;
					endTell;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					setSize 1413 866;
					setLocation -4 -4;
					setFont SanSerif;
					setFontSize 10;
					getToolPalette;
					tell It;
						setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam;
					endTell;
					setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam;
					colorCells  #mesquite.charMatrices.ColorByState.ColorByState;
				tell It;
					setStateLimit 9;
					toggleUniformMaximum on;
				endTell;
					colorRowNames  #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor;
					colorColumnNames  #mesquite.charMatrices.CharGroupColor.CharGroupColor;
					colorText  #mesquite.charMatrices.NoColor.NoColor;
					setBackground White;
					toggleShowNames on;
					toggleShowTaxonNames on;
					toggleTight off;
					toggleThinRows off;
					toggleShowChanges off;
					toggleSeparateLines off;
					toggleShowStates on;
					toggleAutoWCharNames off;
					toggleAutoTaxonNames off;
					toggleShowDefaultCharNames off;
					toggleConstrainCW on;
					toggleBirdsEye off;
					toggleShowPaleGrid off;
					toggleShowPaleCellColors off;
					toggleShowPaleExcluded off;
					togglePaleInapplicable on;
					toggleShowBoldCellText off;
					toggleAllowAutosize off;
					toggleColorsPanel off;
					toggleLinkedScrolling on;
					toggleScrollLinkedTables off;
				endTell;
				showWindow;
				getWindow;
				tell It;
					forceAutosize;
				endTell;
				getEmployee #mesquite.charMatrices.ColorCells.ColorCells;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel;
				tell It;
					togglePanel off;
				endTell;
				getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector;
				tell It;
					autotabOff;
				endTell;
				getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.align.AlignToDropped.AlignToDropped;
				tell It;
					gapCosts 8 3 2 2;
					subCosts  5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5;
				endTell;
				getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor;
				tell It;
					panelOpen false;
				endTell;
			endTell;
		endTell;
		endTell;
end;