#NEXUS BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=60; TAXLABELS Arabidopsis_thaliana_CDK7 Arabidopsis_thaliana_CDKA1 Arabidopsis_thaliana_CDKB1_1 Arabidopsis_thaliana_CDKB1_2 Arabidopsis_thaliana_CDKB2_1 Arabidopsis_thaliana_CDKB2_2 Arabidopsis_thaliana_CDKC1 Arabidopsis_thaliana_CDKC2 Arabidopsis_thaliana_CDKD1_1 Arabidopsis_thaliana_CDKD1_2 Arabidopsis_thaliana_CDKE1 Chlamydomonas_reinhardtii_CDKA Chlamydomonas_reinhardtii_CDKB Cyanidioschyzon_merolae_CDKA Cyanidioschyzon_merolae_CDKB Drosophila_melanogaster_CDK2 Drosophila_melanogaster_CDK4 Ectocarpus_siliculosus_CDKA Ectocarpus_siliculosus_CDKB Ectocarpus_siliculosus_CDKBlike Fragilariopsis_cylindrus_CDKA1 Fragilariopsis_cylindrus_CDKA2 Homo_sapiens_CDK1 Homo_sapiens_CDK10 Homo_sapiens_CDK2 Homo_sapiens_CDK4 Homo_sapiens_CDK6 Homo_sapiens_CDK7 Micromonas_pusilla_CDKA Micromonas_pusilla_CDKB Micromonas_sp._CDKA Micromonas_sp._CDKB Nannochloropsis_gaditana_CDKA1_1 Nannochloropsis_gaditana_CDKA1_2 Nannochloropsis_gaditana_CDKA2 Ostreococcus_lucimarinus_CDKA Ostreococcus_lucimarinus_CDKB Ostreococcus_tauri_CDKA Ostreococcus_tauri_CDKB Ostreococcus_tauri_CDKC Ostreococcus_tauri_CDKD Phaeodactylum_tricornutum_CDKA1 Phaeodactylum_tricornutum_CDKA2 Phaeodactylum_tricornutum_CDKC1 Phaeodactylum_tricornutum_CDKC2 Phaeodactylum_tricornutum_CDKD1 Phytophthora_sojae_CDKA1_1 Phytophthora_sojae_CDKA1_2 Phytophthora_sojae_CDKA2 Saccharomyces_cerevisiae_CDC28 Schizosaccharomyces_pombe_CDC2 Thalassiosira_pseudonana_CDKA1 Thalassiosira_pseudonana_CDKA2 Thalassiosira_pseudonana_CDKC1 Thalassiosira_pseudonana_CDKC2 Thalassiosira_pseudonana_CDKD1 Xenopus_laevis_CDK1 Xenopus_laevis_CDK2 Xenopus_laevis_CDK4 Xenopus_laevis_CDK7 ; END; BEGIN CHARACTERS; TITLE CDK_alignment_MUSCLE; DIMENSIONS NCHAR=226; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX Arabidopsis_thaliana_CDK7 YAKLSFLGEGQFATVYKARDTTIVAVKKIKKGARDGINRTALREIKILQELHENIIGLVDVFVSLVFDFMDDLEVIIKIKAYAIMTLGLEYLHILHRDLKPNNLLVLKIGDFGLAKSFGSPNYTHHVVTRWYRSPELLFGYGTGVDMWAVGCILAELMRVPFMPGDSDLDQLRIFSTLGTPTEAWPHLSKLHDYFRLIFTALIHLMRLFAMNPRVSCREALSMPYF Arabidopsis_thaliana_CDKA1 YEKVEKIGEGTYGVVYKARDKTTIALKKIRLEEDEGVPSTAIREISLLKEMHSNIVKLQDVVLYLVFEYLDDLKKHMDIKTYLYQILGIAYCHVLHRDLKPQNLLILKLADFGLARAFGIPVFTHEVVTLWYRAPEILLGYSTPVDIWSVGCIFAEMIQKPLFPGDSEIDQLKIFRIMGTPYEDWRGVTSLPDYFPLFVPLGVDLLKMLLMDPRINARAALEHEYF Arabidopsis_thaliana_CDKB1_1 YEKLEKVGEGTYGKVYKAMEKTLVALKKTRLEDEEGIPPTALREISLLQMLTSYVVRLLCVELYLVFEYLDDLKKFIDIQKLMFQLCGVAHCHVLHRDLKPQNLLLLKIADLGLGRAFTVPLYTHEIVTLWYRAPEVLLGYSTGVDMWSVGCIFAEMVRQALFPGDSEFQQLHIFRLLGTPTEQWPGVSTLRDWYPLAVPLGVDLLKMLKYNPRISAKTALDHPYF Arabidopsis_thaliana_CDKB1_2 YEKLEKVGEGTYGKVYKAMEKTLVALKKTRLEDEEGIPPTALREISLLQMLQSYIVRLLCVELYLVFEYLDDLKKFIDVQRFMFQLFGVAHCHVLHRDLKPQNLLLLKIADLGLSRAFTVPLYTHEIVTLWYRAPEVLLGYSTAVDIWSVGCIFAEMIRQALFPGDSEFQQLHIFRLLGTPTEQWPGVMALRDWYPLAVPLGIDLLQMLKYNPRISAKAALDHPYF Arabidopsis_thaliana_CDKB2_1 FEKLEKVGEGTYGKVYRAREKTIVALKKTRLHDEEGVPSTTLREISILRMLDPHVVRLMDVQLYLVFEYMDDVKKFIRIKSLMYQLCGMAFCHILHRDLKPHNLLMLKIADLGLARAFTLPMYTHEILTLWYRAPEVLLGYSTAVDMWSVGCIFAELVNQAIFQGDSELQQLHIFKLFGTPNEEWPGVSTLKNWYPLAVPLGVDLLKMLQYEPRISAKMAMEHPYF Arabidopsis_thaliana_CDKB2_2 FEKLEKVGEGTYGKVYRAREKTIVALKKTRLHDEEGVPPTTLREISILRMLDPHIVRLMDVQLYLVFEYVDDLKKFIRVKCLMYQLCGMAFCHVLHRDLKPHNLLMLKIADLGLARAFTLPMYTHEILTLWYRAPEVLLGYSTGVDMWSVGCIFAELVKQAIFAGDSELQQLRIFRLLGTPNEEWPGVSKLKDWYPLAVPLGLDLLKMLEYEPRISAKKAMEHPYF Arabidopsis_thaliana_CDKC1 FEKLEQIGEGTYGQVYMAKEITIVALKKIRMDEREGFPITAIREIKILKKLHENVIQLKEIVIYMVFEYMDDLTGLADIKCYMKQLLGLHYCHVLHRDIKGSNLLILKLADFGLARSYSHDHLTNRVITLWYRPPELLLGYGPAIDMWSVGCIFAELLAKPILPGKNEQEQLKIFELCGSPDEKWPGVSKMPWFFKVFFRFALELLKMLVLDPRISAKDALDAEYF Arabidopsis_thaliana_CDKC2 FEKLEQIGEGTYGQVYMAKEITIVALKKIRMDEREGFPITAIREIKILKKLHENVIHLKEIVIYMVFEYMDDLTGLADIKCYMKQLLGLHYCHVLHRDIKGSNLLILKLADFGLARSYSHDHLTNRVITLWYRPPELLLGYGPAIDMWSVGCIFAELLGKPILPGKTENEQLKIYELCGSPDESWPGVSKMPWYMKVIYRFALELLKMLVLDPRICAKDALDAEYF Arabidopsis_thaliana_CDKD1_1 YLKREVLGQGTYGVVFKATDTNTVAIKKIRLGEKEGVNVTALREIKLLKELHPHIIELIDAFLHIVFEFMEDLEAVIRVKSYLQMILGLEYCHVLHRDMKPNNLLILKLADFGLARIFGSPGFTHQVFARWYRAPELLFGYDGAVDVWAAGCIFAELLRRPFLQGNSDIDQLKIFAAFGTPKADWPDMICLPDYYQLLLPVALDLLKMFTYDPRISIQQALKHRYF Arabidopsis_thaliana_CDKD1_2 YLRRQILGEGTYGVVYKATDTTTVAVKKIRLGQKEGVNFTALREIKLLKELHPHIVELIDAFLHLVFEYMQDLEAVIRIKSYMLMTLGLAYCHVLHRDMKPNNLLILKLADFGLARLFGSPNFTHQVFATWYRAPELLFGYGAGVDVWAAGCIFAELLRRPFLPGSTEIDQLKIFQAFGTPVPSWSDMIYLPDYFSLIFPAALDLLKMFIYDPRITIQQALDHRYF Arabidopsis_thaliana_CDKE1 YNLVGKIGEGTYGLVFLARTKPPIAIKKFKQSDGDGVSPTAIREIMLLREIHENVVKLVNVILYLAFDYAEDLYEIIRVKSLLWQLLGLNYLHIIHRDLKPSNILVVKIADFGLARIYQAPLLSDNVVTIWYRAPELLLGYTSAVDMWAVGCIFAELLLKPLFQGEAQLDQLKIFKILGHPTMDWPTLVNLPHWIQLVHLQAYDLLKMLEYDPRITASQALEHEYF Chlamydomonas_reinhardtii_CDKA YEKLERAGEGTYGVVFKARDRTIVALKKIRLEEDEGVPSTAIREISFLKELHDNVVRLYDVLLYLVFEFLDDLKKQMDIKMYMWQMLGIAFCHILHRDLKPQNLLILKLADFGLARAFGIPVYTHEVVTLWYRAPEILLGYSTPVDIWSIGCIFAEMVHRPLFPGDSEIDQLKIFQLLGTPDEAWAGCSALPDFFPLAVPLGVDLLRMLVYTPRITASAAMEHAYF Chlamydomonas_reinhardtii_CDKB YEKIEKIGEGTYGKVYKARDITLVALKKCRLEEEEGVPSTTLREISLLQMLSNHIVKLLCVELYLVFEYLNDMKKWMDIKSMVYQLIGVAYCHVLHRDLKPQNLLVLKVADLGLGRHFSVPLYTHEIVTLWYRAPEVLLGYATPVDMWSVGCIFAELVKAPLFPGDSEYQQLHIFKLLGTPSEDWPGVTKLRDWWPLIFPLGIDLMRCFAYDPRISAKEAINHPYF Cyanidioschyzon_merolae_CDKA YQRLERIGEGTYGVVYRARDRTLVALKKIRLEEEEGVPSTALREIAILRELQPNVVRLLDVVLYLVFEHLDDLKRYMDAKSFLYQLIGVAYLHILHRDLKPQNLLILKLADFGLARAFGIPVMTSEVITLWYRAPEILLGYAAPVDMWSVGCIFAEMMRKALFPGDSEIDQLKIFRALGTPSEEWPGVSQLPDYFPIVLAGALDLLRLLVYDPRITARQALMHPYF Cyanidioschyzon_merolae_CDKB FRRLEVLGQGTYGTVYKALDLTIVALKKTTLSDDEGIPATTLREVSILRALCENIVKLIDVILYLVFEYAEDLKQYMNAKCFAYQMLGLQFCHIMHRDLKPQNILVIKLADFGLGRAFCIPVYTHEVVTLWYRAPEILLGYSTPVDIWSVGCILAEMIGRSLFCGESEIEQLAIFRVLGTPNEQWPSVVELRDWFPLILPLGCKLLEMLQLDPRITAADALRHPFF Drosophila_melanogaster_CDK2 FEKIEKIGEGTYGVVYKGRNRTIVAMKKIRLEDDEGVPSTAIREISLLKELHENIVCLEDVLIYLIFEFLSDLKKYMDVRSYLYQITAILFCHVLHRDLKPQNLLIIKVADFGLGRSFGIPVYTHEIVTLWYRAPEVLLGYSCPVDIWSIGCIFAEMARKPLFQGDSEIDQLRMFRILKTPTEDWPGVTSLPDYFPLQLKLGIDLIKMLIYDPRISAKDILEHPYF Drosophila_melanogaster_CDK4 YQELNIIGEGAYGTVYRARDVTIVALKKVRISNENGVPMSTLREISLLKQLHANIVKLYEVCILLVFEHVEDLSDLIDIQRLSRELLGVDFLHIIHRDLKPQNLLVLKIADFGLAKTYGSEMLTSVVVTLWYRAPEVLL-YNSTVDIWSAACIIFEMFRRALFPGTSEKNQLRIFELTGRPTEQWPQTISVALEFPPFCPLADDLLKMLSYDLRPSALACLEHDYF Ectocarpus_siliculosus_CDKA YQKLEKIGEGTYGVVYKAKDRTIIALKKIRLEEDEGIPSTAIREISLLKQLHPNIVRL-------------------------------------HRDLKPQNLLILKLADFGLARAFGIPVYTHEVVTLWYRAPDVLMGYSTPVDIWSIGCIFAEMAGRPLLTGTSESDQLRIFRQMGTPTPIYPGLQELPDY--VGGPAYTKLMRRIRWGEDSNSDEEVSKPAL Ectocarpus_siliculosus_CDKB YQKIEKLGEGTYGVVYKAKDRTIVALKRIRLEEDEGIPSTALREISLLRELHPNIVELKDCVLYLIFEFVDDLKKYMEVKSYLFQMVGLEFCHVMHRDLKPQNLLVLKLADFGLARAFCPPILTHEVVTLWYRAPEILLGYAPPVDLWAVGTILVEMVKRPLFPGDSEIDEIKIFQLLGTPNEEWPNVTDLQDWFPLRSQMGLDLLKLLYYDPRISAKRALEHAFF Ectocarpus_siliculosus_CDKBlike YTKQEKAGQGTYGVVYKSWDNTFVALKKIKVEEDDGIPGTALREISLLKELHPNIVELKNCVLWLIFEWVDDLKRYMNIKSYMFQMMALEFCHIMHRDLKPQNLLVLKIADFGLARAFCPPVLTHEVVTIWYRAPEILLGYAPPLDLWSVGTILAEMVKTPMFPGDSEIDEIKIFRVLGTPTESWPNVTDLDDWFPLEYALGINMLQLLAYDPRLSAKRALKHPFF Fragilariopsis_cylindrus_CDKA1 YQKMEKIGEGTYGIVYKAKDRTIIALKKIRLEEDEGIPSTAIREISLLKELHPNIVRLYDVVLTLVFEFLDDLKKYLDLKSFLYQLLGVAYCHVLHRDLKPPNLLILKLADFGLARAFGIPVYTHEVVTLWYRAPDVLLGYSTPVDIWSVGCIFAEMAGRPLVAGTSEDDQLRIFRLLGTPKPSFPGIVDLPDWYPLLVPLGIELLLMLQYDPRITAQDALQHRFF Fragilariopsis_cylindrus_CDKA2 YQKIEKLGEGTYGVVYKALDRTIVALKRIRLEEDEGIPSTALREISLLRELHENVVELMDCVLYLVFEFLDDLKKYMEVKSYLFQICGLAFCHVMHRDLKPQNLLVLKLADFGLARAFCPPILTHEVVTLWYRPPEILLGYAPPVDVWAIGAIFVEMVKRPLFPGDSEIDQLKIFRLLGTPNEEWPGVTHLPDWFPYVTELGMDLLRFLFYDPRITAKDSLNHPYF Homo_sapiens_CDK1 YTKIEKIGEGTYGVVYKGRHKTVVAMKKIRLEEEEGVPSTAIREISLLKELHPNIVSLQDVLLYLIFEFLSDLKKYLDVKSYLYQILGIVFCHVLHRDLKPQNLLIIKLADFGLARAFGIPIYTHEVVTLWYRSPEVLLGYSTPVDIWSIGTIFAELAKKPLFHGDSEIDQLRIFRALGTPNNEWPEVESLQDYFPLHVKLGLDLLKMLIYDPRISGKMALNHPYF Homo_sapiens_CDK10 FEKLNRIGEGTYGIVYRARDTTIVALKKVRMDEKDGIPISSLREITLLLRLHPNIVELKEVVIFLVMGYCEDLASLLEVKCIVLQVLGLQYLHIIHRDLKVSNLLMVKTADFGLARAYGVPVMTPKVVTLWYRAPELLLGQTTSIDMWAVGCILAELLHRPLLPGTSEIHQILIVQLLGTPSENWPGFSKLPLVYSLKFPLGLRLLFLFMYDPRATAGDCLESSYF Homo_sapiens_CDK2 FQKVEKIGEGTYGVVYKARNKTVVALKKIR?DETEGVPSTAIREISLLKELHPNIVKLLDVILYLVFEFLHDLKKFMDIKSYLFQLLGLAFCHVLHRDLKPQNLLIIKLADFGLARAFGVPVYTHEVVTLWYRAPEILLGYSTAVDIWSLGCIFAEMVRRALFPGDSEIDQLRIFRTLGTPDEVWPGVTSMPDYFPFVVPLGRSLLQMLHYDPRISAKAALAHPFF Homo_sapiens_CDK4 YEPVAEIGVGAYGTVYKARDPSFVALKSVRVPGGGGLPISTVREVALLRRLHPNVVRLMDVCVTLVFEHVDDLRTYLDIKDLMRQFLGLDFLHIVHRDLKPENILVVKLADFGLARIYSYQMLTPVVVTLWYRAPEVLLQYATPVDMWSVGCIFAEMFRKPLFCGNSEADQLKIFDLIGLPPEDWPRDVSLPRGFPVVVPMGAQLLEMLTFNPRISAFRALQHSYL Homo_sapiens_CDK6 YECVAEIGEGAYGKVFKARDLNFVALKRVRVQGEEGMPLSTIREVAVLRHLHPNVVRLFDVCLTLVFEHVDDLTTYLDIKDMMFQLLGLDFLHVVHRDLKPQNILVIKLADFGLARIYSFQMLTSVVVTLWYRAPEVLLQYATPVDLWSVGCIFAEMFRKPLFRGSSDVDQLKILDVIGLPGEEWPRDVALPRQFHIFVTIGKDLLKCLTFNPRISAYSALSHPYF Homo_sapiens_CDK7 YEKLDFLGEGQFATVYKARDKTIVAIKKIKLGAKDGINRTALREIKLLQELHPNIIGLLDAFISLVFDFMEDLEVIIKIKAYMLMTLGLEYLHILHRDLKPNNLLLLKLADFGLAKSFGSPNYTHQVVTRWYRAPELLFGYGVGVDMWAVGCILAELLRVPFLPGDSDLDQLRIFETLGTPTEEWPDMCSLPDYFKLIFSALLDLIGLFLFNPRITATQALKMKYF Micromonas_pusilla_CDKA FEKVEKIGEGTYGVVYKARNRNVVALKRIRLEEEEGVPSTAIREISLLKELHENIVSLMDVILYLVFEHLDDLKKHLDIKGYLYQMCGVAYCHVLHRDLKPQNLLVLKLADFGLARAFGIPVYTHEVVTLWYRSPEILLGYSTPVDVWSIGCIFAEMIHAPLFPGDSEIDQLRIFRVLGTPDDDWPAVSSLPDYFPWVCPLGIDLLSLLHYAPRVSAREACEHRFF Micromonas_pusilla_CDKB YEKLEKIGQGTYGKVYKARDRTLVALKKTRLEEEEGVPSTALREVSLLQMLSAFIVRLLKVELYLVFEYLDDLKNFMDVQDFMYQLCGCAHLHVMHRDLKPQNLLVIKVADLGLGRAFSVPVYTHEIVTLWYRAPEVLLGYSTPVDIWSVGCIFAELAKQPLFPGDSELQQLHVFKLLGTPSEEWPGVTRLRDWFPLVIPLGIDLMKMLVYDPRIHATEALEHPYF Micromonas_sp._CDKA FEKVEKIGEGTYGVVYKARDRDVVALKRIRLDEEEGVPSTAIREISLLKELHENIVSLMDVILYLVFEFLDDLKKHLDIKGYLYQMCGIAYCHVLHRDLKPQNLLVLKLADFGLARAFGIPLYTHEVVTLWYRSPEILLGYSTPVDVWSIGCIFAEMIHAPLFPGDSEIDELRIFRVLGTPDDGWQGVEQLPDYFPWICPLGLDLLQMLQYAPRISARDACNHRFF Micromonas_sp._CDKB YEKLEKIGQGTYGKVYKARERTLVALKKTRLEEEEGVPSTALREVSLLQMLSAFVVRLLKVELYLVFEYLDDLKGFMDVQDFMYQLCGCAHIHVMHRDLKPQNLLVIKVADLGLGRAFSVPVYTHEIVTLWYRAPEVLLGYSTPVDIWSVGCIFAELAKQPLFPGDSELQQLHIFKLLGTPSEDWPGVTRLRDWFPLVIPLGIDLLKMLVYDPRIHATEALEHPYF Nannochloropsis_gaditana_CDKA1_1 YQKLEKIGEGTYGVVFKAKDRTILALKKIRLEEDEGIPSTAIREISLLKELHPNIVRLYDVVLTLVFEYLDDLKKYLDLQSFLYQLLGVAFCHVLHRDLKPQNLLILKLADFGLARAFGIPVYTHEVVTLWYRAPDVLMGYSTPVDIWSIGCIFAEMAGRPLFAGSSESDQLRIFRALGTPTEGYPGIVELPEFFPWLVPLGIDLLKMLTFDPRVSARDALSHPFF Nannochloropsis_gaditana_CDKA1_2 FTNIQQIGEGTYGIVYKATTSNLIALKQIRLAEDEGVPSTAIREISLLKELHPNVVTLKDVILYLVFEYLDDLKRYMDVKSYLHQMIGVAFCHVLHRDLKPQNLLILKLADFGLARAFNVPLYTREVVTLWYRAPEILLGYSTPVDTWSIGCIFAEMLKEPLFPGDSEIDELRIFRVLGTPNDEWPKVTELPNYFPLNVSLGLDLLRLLTYEPRITCREAQDHAYF Nannochloropsis_gaditana_CDKA2 YQKIEKLGEGTYGVVYKARDKTIVALKRIRLEEDEGIPSTALREISLLQELHPCIVELLDCVLYLVFEFVDDLKKYMEVKSFLFQIFGLAFCHIMHRDLKPQNLLVLKIADFGLARAFVPPILTHEVVTLWYRPPEILLGYAPPVDVWACGAIFVELLKRAMFQGDSEVDQLKIFRSLGTPSEEWPGVTALQDWFPLYCPIGLDLLKLVVLDPRISAKTALYHRYF Ostreococcus_lucimarinus_CDKA YEKVLKIGEGTYGVVYKAKNLDMVALKRIRLDDEEGVPSTAIREISLLKELHENVVSLLEVILYLVFEYLDDLKKHMDVKGYVYQICGIAFCHVLHRDLKPQNLLILKLADFGLARAFGIPVYTHEVVTLWYRAPEILLGYSTPVDVWSIGCIFAEMIGKPLFPGDSEIDELKIFKILGTPNETWPEAQELPDYFPWLCPLGVDLLQMLQYTPRISAKHAMQHKWF Ostreococcus_lucimarinus_CDKB YEKLEKIGQGTYGKVYKARERNLVALKKTRLEEEEGVPSTALREVSLLQMLSPYIVRLLRVELYLVFEFLDDLKQYMDVQNYMYQLCGCAHLHVMHRDLKPQNMLVLKIADLGLGRAFSVPVYTHEIVTLWYRAPEVLLGYSTPVDMWSVGCMFAEMAKQPLFPGDSELQQLHIFKLLGTPSEQWPGVSNLRDWFPLVIPLGIDLLKLLVYDPRIHATDALEHPYF Ostreococcus_tauri_CDKA YEKVAKIGEGTYGVVYKAKSLDMVALKRIRLDDDEGVPSTAIREISLLKELHENVVSLLEVILYLVFEYLDDLKKHMDIKGYVYQICGIAFCHVLHRDLKPQNLLILKLADFGLARAFGIPVYTHEVVTLWYRAPEILLGYSTPVDVWSIGCIMAEMVHAPLFPGDSEIDELKIFKTLGTPGETWPEAKQLPDYFPWLCPLGVDLLSLLQYSPRISAKYATQHRWF Ostreococcus_tauri_CDKB YEKLEKIGQGTYGKVYKARDRTLVALKKTRLEEEEGVPSTALREVSLLQMLSPYIVRLLRVELYLVFEFLDDLKQFMDVQNYMYQLCGCAHLHVMHRDLKPQNMLVLKIADLGLGRAFSVPVYTHEIVTLWYRAPEVLLGYSTPVDMWSVGCMFAEMAKQPLFPGDSELQQLHIFKLLGTPSEQWPGVSNLRDWFPLLIPLGIDLLKLLVFDPRIHATDALEHPYF Ostreococcus_tauri_CDKC YEKLEQIGEGTYGQVYMARCKTIVALKKIRMDEKEGFPITAIREIKILKKLHRNVVDLKEIVIYLVFEYMDDLTGLAEIKCYMKQLLGLHYCHILHRDIKGSNLLILKLADFGLAKPITNENLTNRVITLWYRPPELLLGYGPSVDMWSAGCIFAELIGKPILPGKSEMEQMIIFKLCGSPTPEWPDADKLPYAFTLVFSFAKDLLKFLTLDPRISAKDALMHDWF Ostreococcus_tauri_CDKD YERGRTLGEGTYGVVHEARVKTVVAIKKIRLGLKEGVNFTAIREIKLLQEIHEHVIELVDVFLNLVFEYCGDLEMVIKVKSYARMTLAVAHCHVLHRDLKPNNLLILKLADFGLARIFGSPDFTHQVFARWYRAPELLLGYGPGVDVWAVGCILAELMRKPFFAGSSDIDQLKVYAALGTPTETWPGVSALPDFFILTFPESLDLLRMLEYDPRITAAQALEHPYF Phaeodactylum_tricornutum_CDKA1 YQRMEKIGEGTYGVVYKAKDRTIIALKKIRLEEDEGIPSTAIREISLLKELHPNIVRLYDVVLTLVFEFLDDLKKYLDLKSFLYQLLGVAYCHVLHRDLKPPNLLILKLADFGLARAFGIPVYTHEVVTLWYRSPDVLMGYSTPVDIWSVGCIFAEMAGRPLVAGTSEADQLRIFRLLGTPKLEYPTINELPEYMPLLVPLGIDLLRMLQYDPRITAQAALEHEYF Phaeodactylum_tricornutum_CDKA2 YHKIEKLGEGTYGVVYKALDRTIVALKRIRLEEDEGIPSTALREISLLRELHPNIVDLKDCVLYLVFEFLDDLKKYMEIKSYTFQCLGLAFCHVMHRDLKPQNLLVLKIADFGLARAFCPPILTHEVVTLWYRPPEILLGYAPPMDVWAIGAILVEMIKRPLFPGDSEIDQLKIFRQLGTPREDWPGVTQLQDWFPFVLDLGLELLTILAYDPRITAKESLDHAYF Phaeodactylum_tricornutum_CDKC1 YERQEQIGEGTYGQVYRARCKTVVALKKMRMHGGYGMPLQFIREIKILKKLHPNLLQMIEVVLFLVLEYVSDLTGLMDVKCIFRQLLACAYMHYVHRDIKSSNILLVKLADFGLARNIEPPFFTNKVITLWYRPPEILTGYGPAVDVWSAGCILAELLGKPLLPGKSDLEQLLIADMLGTPAPDWDYLSSMKRVLDLYAAIAMNLLKLLAWDPRLTATGALQNKYF Phaeodactylum_tricornutum_CDKC2 FTKKHQVGQGTYGSVFVGQDKTIVALKRINTKEENGFPITALREVKILKVLHPNIVTLKEIVVFMVFEYLEDLTGVLEVKSWSQQLLGVHYMHVIHRDLKASNLLILKIADWGLARSWNSEMLTNKVITLWYRPPELLLGYTDKIDMWSVGCIIAEMFRSGFLKGSNEATQLLIFRTCGHPTKEWPSLGDKRLWFPLKLPPAIELIKLMALNPRWSAEHALDAEYF Phaeodactylum_tricornutum_CDKD1 YKVLSALGQGTWGVVHKAEQKSVVAIKKIKSEPEEGVNFTAVREIKLLREFHENIVELVDCFVCLVYECAFDLEKILGTKQHLLSLLAISACHILHRDLKPDNMLFMKLADFGLARMHGTPKLSPQAITLWYKPPELLLGYSSSADMWSVGCIFAELLRRPFLQGQTDLSQLTIFTVFGTPNETWADFQTLPLCWDFIFTAAISLLSILVLDPRFTATQCLSHPYF Phytophthora_sojae_CDKA1_1 YQKLEKIGEGTYGVVYKAKDRTVIALKKIRLEEDEGIPSTAIREISLLKELHCNIVRLYNIVLTLVFEYLDDLKKYLDLKSFLYQLLGIAYCHVLHRDLKPQNLLILKLGDFGLARAFGIPVYTHEVVTLWYRAPDVLMGYSTPVDIWSVGCIFAEMAGGPLFAGTSEADQLRIFRLLGTPTMEYPAIIDLPEYFPLLVPLGVDLLQMLQYDPRITAADAMAHPYF Phytophthora_sojae_CDKA1_2 YQKVEKVGEGTYGIVYKARDLTIVALKKIRLEDEEGIPSTAMREISLLKELHPNVVYLYDAVLYLVFEFVEDLKRCLEVKSYLYQLLGIAFCHVLHRDLKPQNLLILKLGDFGLAREYGVPLYTHEVVTLWYRAPEVLLGYSTPVDSWSIGCIFAEMVKQPLFPGDSEIDELRIFRVLGTPNEAWPGVSTLPDYFPLVVPLGLDLLRLLVYDPRISARAAMSHPWF Phytophthora_sojae_CDKA2 YQRIEKIGEGTYGVVYKSLDLTVVALKRIRLEEDDGIPSTALREISVLRELHPNIVSLLDCLLFLVFEFMDDLKRFMEIKSLLYQLLGLAFSHIMHRDLKPQNLLVLKIADFGLARAFSLPIYTHEVVTLWYRAPEILLGYCPPVDIWSVGVIFAEMVKKPLFTGDSEIDQLRIFRTLGTPNESWPGVTKLRDYFPLLFPLGLHLLSMLRYDPRISAKEALRHPYF Saccharomyces_cerevisiae_CDC28 YKRLEKVGEGTYGVVYKALDLPVVALKKIRLEEDEGVPSTAIREISLLKELDDNIVRLYDIVLYLVFEFLDDLKRYMEVKKFMMQLCGIAYCHILHRDLKPQNLLILKLGDFGLARAFGVPLYTHEIVTLWYRAPEVLLGYSTGVDTWSIGCIFAEMCRKPIFSGDSEIDQIKIFRVLGTPNEAWPDIVYLPDFFPLVVPLGIDLLKLLAYDPRISARRAAIHPYF Schizosaccharomyces_pombe_CDC2 YQKVEKIGEGTYGVVYKARHKSIVAMKKIRLEESEGVPSTAIREISLLKEVDENCVRLLDILLYLVFEFLDDLKKYMDVQKFTYQLVGVNFCHIIHRDLKPQNLLILKLADFGLARSFGVPLYTHEIVTLWYRAPEVLLGYSTGVDIWSVGCIFAEMIRSPLFPGDSEIDEIKIFQVLGTPNEEWPGVTLLQDYFPLVVPGAIELLAMLVYDPRISAKRALQQNYL Thalassiosira_pseudonana_CDKA1 YQKMEKIGEGTYGVVYKAKDRSIIALKKIRLEEDEGIPSTAIREISLLKELHPNIVRLYDVVLTLVFEFLDDLKKYLDLKSFLYQLLGVAYCHVLHRDLKPPNLLILKLADFGLARAFGIPVYTHEVVTLWYRAPDVLMGYSTPVDIWSVGCIFAEMVGRPLIAGTSEGDQLRIFRLLGTPSPAFPGIVDLPEYLPFLVPLGVDLLKMLQYDPRITANDALKHPFF Thalassiosira_pseudonana_CDKA2 YQKIEKLGEGTYGVVYKARDRTTVALKRIRLEEDEGIPSTALREISLLRELHENIVDLKDCVLYLVFEFLDDLKKALEVKSYLFQMCGLAFCHVMHRDLKPQNLLVLKLADFGLARAFCPPILTHEVVTLWYRPPEILLGYAPPVDVWAIGTIFVEMVKRPLFPGDSEIDELKIFRQLGTPNEEWPGVTALQDWFPFFLDTAVDLLRLLAYSPRITAKDTLNHPYF Thalassiosira_pseudonana_CDKC1 YCRLEQIGEGTYGQVYRAKCLTMVALKKIRLQSGHGIPPTVLREIKILKKLHKAMVKMYEVVLFLSLEYISDLTGLLDVKSVVQQLLVLEFMHYVHRDLKSSNILIVKLADFGLARCLEG--FTNKVITLWYRPPELLLGYGTAVDIWSAGCILAEVIGRPMFTGKTDMDQLLIFDLIGTPTDKWEGFRQLKLIIDLKYSKALNLLKLLELDPRISARGALTHRYF Thalassiosira_pseudonana_CDKC2 FQKKHQVGEGTYGSVFVGADKTVVALKRINTEEENGFPITAIREVKILKALHDNIVQLKEIVVFMVFEYLEDLTGIIEIKSWSKQLLGVHYMHIIHRDLKSSNLLILKIADWGLARSWNSEMLTNRVITLWYRPPELLLGYSTKIDMWSVGCIIAEMFRGGLLKGSSEASQLLIFRVMGHPTTEWPNINKMPLWLPLRLPAAMDMINLLAYNPRWSAAQALTAEWF Thalassiosira_pseudonana_CDKD1 YEVIKALGQGTWGVVHMAKQRTIVALKKIKSEPEEGVNFTAIREIKLLREFHENIIELVDVFVCLVYECADDLEKILKTKQHLLTLLAISACHILHRDLKPDNCLFMKLADFGLARMYGTPKLSPQAITLWYKPPELLLGYSSAADIWSVGCIFAELLRRPFLQGQSDVSQLTIFQVFGTPTETWPDHNTLPLCWDFIFTACLSLLSMLVLDPRITANAALLHPYF Xenopus_laevis_CDK1 YTKIEKIGEGTYGVVYKGRHKTVVAMKKIRLEEEEGVPSTAIREISLLKELHPNIVCLLDVLLYLIFEFLSDLKKYLDVKSYLYQILGIVFCHVLHRDLKPQNLLIIKLADFGLARAFGIPVYTHEVVTLWYRAPEVLLGYSTPVDVWSIGTIFAEIAKKPLFHGDSEIDQLRIFRALGTPNNEWPEVESLQDYFPLNVKIGLDLLKMLIYDPRISARKALLHPYF Xenopus_laevis_CDK2 FQKVEKIGEGTYGVVYKARNRTIVALKKIRLDETEGVPSTAIREISLLKELHPNIVKLLDVILYLVFEFLNDLKKFMDVKSYLFQLLGLAFCHVLHRDLKPQNLLIIKLADFGLARAFGVPVFTHEVVTLWYRAPEILLGYSTAVDIWSLGCIFAEMIRRALFPGDSEIDQLRIFRTLGTPDEVWPGVTTMPDYFPFVVPLGRDLLQMLQYDSRISAKVALTHPFF Xenopus_laevis_CDK4 YEPVAEIGVGAYGTVYKARDLSFVALKNVRVQNENGLPLSTVREVTLLKRLHPNIVKLMDVCVTLVFEHVDDLKTYLSIKDLMKQFLGLEFLHIVHRDLKPENILVVKLADFGLARIYSCQMLTPVVVTLWYRAPEVLLQYATPVDVWSAGCIFAEMFRKPLFCGNSEADQLKIFDIIGLPSEEWPVDVTLPRSFSVFVPIGADLLAMLTFSPRISASDALLHPFF Xenopus_laevis_CDK7 YEKLDFLGEGQFATVYKARDKTIVAIKKIKLGANDGINRTALREIKLLQELHPNIIGLLDAFISLVFDFMEDLEVIIKIKSYMLMTLGLEYLHILHRDLKPNNLLLLKLADFGLAKSFGSPNYTHQVVTRWYRSPELLFGYGVGVDMWAVGCILAELLRVPFLPGDSDLDQLRIFETLGTPTEEWPGMSSLPDYFKLIFIALLELLGLFTFNPRCTASQALRKRYF ; END; BEGIN TREES; Title 'Diatom cyclin-dependent kinase A2'; LINK Taxa = Taxa; TRANSLATE 1 Arabidopsis_thaliana_CDK7, 2 Arabidopsis_thaliana_CDKA1, 3 Arabidopsis_thaliana_CDKB1_1, 4 Arabidopsis_thaliana_CDKB1_2, 5 Arabidopsis_thaliana_CDKB2_1, 6 Arabidopsis_thaliana_CDKB2_2, 7 Arabidopsis_thaliana_CDKC1, 8 Arabidopsis_thaliana_CDKC2, 9 Arabidopsis_thaliana_CDKD1_1, 10 Arabidopsis_thaliana_CDKD1_2, 11 Arabidopsis_thaliana_CDKE1, 12 Chlamydomonas_reinhardtii_CDKA, 13 Chlamydomonas_reinhardtii_CDKB, 14 Cyanidioschyzon_merolae_CDKA, 15 Cyanidioschyzon_merolae_CDKB, 16 Drosophila_melanogaster_CDK2, 17 Drosophila_melanogaster_CDK4, 18 Ectocarpus_siliculosus_CDKA, 19 Ectocarpus_siliculosus_CDKB, 20 Ectocarpus_siliculosus_CDKBlike, 21 Fragilariopsis_cylindrus_CDKA1, 22 Fragilariopsis_cylindrus_CDKA2, 23 Homo_sapiens_CDK1, 24 Homo_sapiens_CDK10, 25 Homo_sapiens_CDK2, 26 Homo_sapiens_CDK4, 27 Homo_sapiens_CDK6, 28 Homo_sapiens_CDK7, 29 Micromonas_pusilla_CDKA, 30 Micromonas_pusilla_CDKB, 31 Micromonas_sp._CDKA, 32 Micromonas_sp._CDKB, 33 Nannochloropsis_gaditana_CDKA1_1, 34 Nannochloropsis_gaditana_CDKA1_2, 35 Nannochloropsis_gaditana_CDKA2, 36 Ostreococcus_lucimarinus_CDKA, 37 Ostreococcus_lucimarinus_CDKB, 38 Ostreococcus_tauri_CDKA, 39 Ostreococcus_tauri_CDKB, 40 Ostreococcus_tauri_CDKC, 41 Ostreococcus_tauri_CDKD, 42 Phaeodactylum_tricornutum_CDKA1, 43 Phaeodactylum_tricornutum_CDKA2, 44 Phaeodactylum_tricornutum_CDKC1, 45 Phaeodactylum_tricornutum_CDKC2, 46 Phaeodactylum_tricornutum_CDKD1, 47 Phytophthora_sojae_CDKA1_1, 48 Phytophthora_sojae_CDKA1_2, 49 Phytophthora_sojae_CDKA2, 50 Saccharomyces_cerevisiae_CDC28, 51 Schizosaccharomyces_pombe_CDC2, 52 Thalassiosira_pseudonana_CDKA1, 53 Thalassiosira_pseudonana_CDKA2, 54 Thalassiosira_pseudonana_CDKC1, 55 Thalassiosira_pseudonana_CDKC2, 56 Thalassiosira_pseudonana_CDKD1, 57 Xenopus_laevis_CDK1, 58 Xenopus_laevis_CDK2, 59 Xenopus_laevis_CDK4, 60 Xenopus_laevis_CDK7; TREE Fig._1_treeML = (24:0.47186804,(((44:0.3743866,54:0.3473165)0.9990:0.49399174,((45:0.21968494,55:0.08254193)1.0000:0.63791515,(40:0.22219998,(7:0.01955511,8:0.04791993)1.0000:0.15624962)1.0000:0.14745377)0.5330:0.11182075)0.8160:0.14209787,((11:0.84630405,((46:0.17221617,56:0.04528244)1.0000:0.62076595,((1:0.26676848,(60:0.06146781,28:0.030581)1.0000:0.03434723)1.0000:0.33757604,(41:0.35408331,(9:0.19172337,10:0.10229649)1.0000:0.15278817)0.8660:0.07608824)0.9150:0.17556287)0.6050:0.15367614)0.5960:0.04979781,((17:0.59906985,(27:0.1616302,(59:0.12855734,26:0.11031127)0.9920:0.12832348)0.9990:0.28593381)0.8110:0.4251145,(15:0.60250685,((((5:0.07231397,6:0.03914329)1.0000:0.21693465,(3:0.02150663,4:0.07506075)1.0000:0.10908754)0.7550:0.11667803,(13:0.23544559,((32:0.02822139,30:0.01233252)1.0000:0.05435555,(37:0.01723337,39:0.01168053)1.0000:0.05928218)1.0000:0.10148259)0.7610:0.0)1.0000:0.24155131,(14:0.28010012,((49:0.24550486,((20:0.35000979,19:0.03530067)0.4800:0.12875035,(35:0.20474342,(43:0.11957316,(53:0.08851065,22:0.08211213)0.6410:0.02130761)0.9000:0.05629797)0.3600:0.0132974)0.8950:0.11864678)0.9180:0.11555651,((48:0.23410952,(50:0.21284603,51:0.22991298)0.6970:0.10254713)0.2680:0.01956748,((18:0.39088551,(33:0.08403564,(47:0.10377612,(42:0.06511942,(52:0.05885445,21:0.0640483)0.5860:0.03444603)0.8710:0.03651583)0.8450:0.04534518)0.7470:0.0)1.0000:0.20554055,(((58:0.03234434,25:0.03774025)1.0000:0.17971947,(16:0.17752674,(57:0.02293436,23:0.05087458)1.0000:0.11848053)0.9950:0.10138431)0.2860:0.01617769,((12:0.21327929,2:0.1780285)0.4600:0.01992904,(34:0.32688762,((38:0.07212593,36:0.03917284)1.0000:0.16778241,(31:0.05204861,29:0.07252504)0.9970:0.06974391)0.9710:0.11753478)0.3100:0.05847273)0.0980:0.05017599)0.1050:0.00569228)0.1480:0.0)0.5130:0.04539995)0.2070:0.03870788)0.4260:0.00936794)0.4440:0.0)0.9770:0.10241894)0.5040:0.16342575)0.7520:0.17892229)0.0000:0.14710248):0.0; END;