#NEXUS [saved by seaview on Wed Mar 04 11:00:25 2015] BEGIN DATA; DIMENSIONS NTAX=64 NCHAR=4315; FORMAT DATATYPE=DNA GAP=- ; MATRIX [1] Bovine_immunodeficiency_virus ------------------------------------------------------------ -----------------ACAGCAAAAATGCTACCATTGTGGCAAACCTGGCCACCAAGCA AGAAACTGCAGG------------------TCAAAAAACGGGAAGTGCTCCTCTGCCCCT TATGGGC----------AGAGGAGCCAAC---CACAGAACAATTTTCACCAG-------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------------------------AGCAACATG----- ------------------------------------------------------------ -----------------AGTTCTGTGACCCCATCTGCACCCCCT--CTTAT--------- ---------ATTAGATTAGACAAACAGCCTTTTATAAAGGTGTTCATAGGGGGAAGATGG GTAAAAGGGTTAGTAGACACTGGAGCAGATGAGGTAGTGCTTAAGAACATACATTGGGAT AGGAT-------AAAAGGGTATCCAGGGACACCAATTAAACAAATTGGGGTAAATGGAGT AAATGTGGCC-AAAAGGAAGACCCACGTAGAGTGGAGATT---------------TAAGG ATAAGACTGGGATAATTGATGTCTTGTTC---TCAGATACTC------------------ ------CTGTAAACCTTTTTGGGAGATCTCTTCTACGTAGCATAGTGACTTGCTTCAC-- ----CCTACTTGTTCACACAGAAA---AAATCGAACCCCTACCCGTC------AAGGTAA GGGGACCAGGGCCTAAGGTACCCCAGT-GGCCCTTGACAAAAGAAAAGTATCAGGCTCTT AAGGAAATTGTGAAAGATCTTTTAGCAGAAGGAAAAATTTCCGAAGCTGCTTGGGATAAC CCATATAATACCCCAGTTTTTGTTATAAAGAAAAAGGGAACGGGAAGATGGAGGATGCTA ATGGATTTTAGGGAATTAAATAAGATAACAGTTAAAGGACAAGAATTCTCTACAGGCTTA CCTTACCCTCCAGGAATTAAGGAATGTGAACACTTAACTGCAATAGATATAAAAGATGCC TACTTTACTATCCCTTTACATGAGGACTTTAGACCCTTTACAGCCTTCTCTGTAGTCCCT GTAAATCGAGAAGGACCTATAGAGAGGTTCCAGTGGAATGTTCTACCACAAGGATGGGTA TGTAGCCCTGCCATTTATCAGACTACCACCCAGAAGATTATAGAAAACATTAAAAAGAGT CACCCA---GATGTCATGTTGTATCAATATATGGATGATTTGTTGATTGGGTCTAAT--- ---AGGGATGATCATAAGCAAATAGTGCAGGAAATCAGGGATAAGTTAGGATCATATGGT TTCAAGACTCCAGATGAAAAGGTCCAGGA---------AGAGAG---AGTGAAATGGATC GGTTTTGAGCTCACACCCAAGAAATGGCGTTTTCAGCCCAGGCAACTA------AAGATA AA------AAACCCACTCACAGTAAATGAATTACAGCAATTAGTAGGTAATTGTGTTTGG GTA---CAGCCAGAAGTAAAAATCCCTCT---------ATACCCCTTAACCGATCTACTG AGGGATAAGACCAATCTCCAAGAAAAGATACAACTAACACCAGAAGCCATCAAGTGTGTA GAAGAATTCAATCTAAAACTAAAAGATCCAGAATGGAAAGATAGAATAAGAGAAGGAGCA GAATTAGTCATAAAAATAC----------AGATGGTTCCTCGGGGCATAGTATTTGATCT GTTGCAAGA--------TGGAA------ATCCCATATGGGGAGGAGTAAAAGGACTAAAT TATGATCATTCAAACAAAATAAAAAAGATACTTAGAACTATGAATGAGCTGAACAGAACA GTGGTAATTATGACAGGAAGAGAAGC-----------------TAGTTTCCTGCTTCCTG --------------GGTCTTCTGAAGATTGGGAAGCGGCACTCCAGAAGGAAGAAAGTCT AA------CACAAATATTCCCAGTAAAGTTT--------------------------TAT AGGCACTCCTGCAGATGGAC-CTCCAT-----------ATGTGGGCCAGTAAGA---GAA AATCTAACCACCTACTATACTGACGGAGGG------AAGAAAGGGAAAACAGCTGCAGCA GTATATTGG---TGTGAAGGAAGGACTAAGTCAAAGGTATTTCCA---GGAACCAATCAA CAGGCGGAATTGAAGGCCATATGCATGGCTCTCTTGG---ATGGACCACCAAAAATGAAT ATCATAACAGATAGTAGATACGC------------------CTATGAGGGAATGAGAGAA GAACCAGAAACG----TGGGCCAGGGAAGGAATCTGGCTGGAGATTGCCAAGATATTGCC CTTTAAGCAGTACGTGGGGGTCGGGTGGGTGCCTGCACATAAAGGG---ATAGGAGGAAA TACAGAGGCAGATGAAGGAGT--------------------TAAGAAAGCCT----T--- ----------------------------------AGAACAGATGGC------CCCGTGTA GCCCTCCTG-----------AGGCCATTCTATTAAAACCAGGAGAAAAACAAAATCTGGA GACAGGGATCTACATGCAGGGGCTTAGACCACAAAGCTTCCTCCCAAGAGCAGACTTACC AGTAGCCA---------------TCACAGGAACCATGGTAGATTCAGAGCT--------- ----ACAGCTACAGCTACTTAACATAGGAACTGAGCATATAAGAATCCAAAAAGATG--- ------------------------------------------------------------ ---------------------------------------------AGGTCTTCATGAC-- -----------CTGTTTCCTAGAAAATATCCCCTCAGCCACT-GAAGATCATGA-GAGAT GGCATACCTCACCAGACATTTTGGTTAGGCAGTTCCATCTCCCTAAGAGAATAGCTAAAG AGATAGTAGCCAGATGCCAAGAATGTAAAAGGAC-----------AACCACTA----GCC CAGTCAGAGGAACAAACCCCAGAGGTCGA------------TTCTTATGGCAGATGGACA ATACTCACTGGAATAAA------------ACAATTATTTGGGTAGCAGTAGAGACAAATT CAGGATTAGTGGAAGCTCAGGTGATCCCTGAAGAAACAGCACTACAA---GTAGCTCTCT GCATTTTACAGCTAATCCAGA---GATATACAGTTCTTCACTTACATAGTGACAACGGGC CGTGCTTTACTGCACACAGGATAGAAAATCTATGTAAGTATCTGGGGATCACAAAAACTA CGGGAATACCCTACAACCCACAATCCCAGGGAGTTGTAGAAAGAGCCCACAGAGATCTAA AAGACAGATTGGCAGCTTATCAGGGAGATTGTGAAACCGTAGAAGCAGCCCTTAGCCTC- --------------GCATTAGTTTCTTTAAAT---AAAAAAAGAGGGGGAATAGGGGGCC ATACACCATATGAAATATACCTAGAATCAGAACATACCAAATACCAAGACCAACTAGAAC ------AACAATTTTCAAAACAA---AAAATTGAAAAGTGGTGTTAC---------GTAA GGAACAGAAGAAA-----GGAATGGAAAGGACCCTACAAAGTGTTGTGGGACGGAGACGG GG-CAGCAGTAATAGAG------GAAGAGGGAAAAACAGCCTTATATCCACACCGTCATA TGCGCTTCATCCCCCCCCCAGATTCAGATAT--------------------CCAAGATGG GAGT-------TCGTGA------------------------------------------- ------------------------------------------------------- [2] Caprine_arthritis_enephalitis_virus ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------------ATGTCAC----------AACTGT GGAA-------------AGAGAGGAC---------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------ATATGCAAAAAGAATGCA---------------GAGGAAAGA----- ---GAGACATAAGGGGAAAACAGCAGGGAAACGGGAGGAGG------------------- -----------------GGGATACGTGTGGTGCCGTCCGCTCCT--CCTAT--------- ---------GGAATAACTTCAGCACCACCTATGGTTCAGGTCCGCATAGGTTCCCAGCAG AGGAACTTGTTATTTGATACCGGGGCGGACCGAACTATAGTTAGATGGCATGAGGGCTCG ----------------GGAAACCCAGCCGGAAGGATAAAACTGCAAGGAATAGGAGGAAT AGTAGAAGGA-GAAAAATGGAATAATGTAGAATTAGAATA---------------TAAAG GAGAAACAAGAAAGGGAACAATAGTAGTG---TTACCACAAAGTC--------------- ------CAGTAGAAGTATTAGGACGAGATAACATGGCCCGATTTGGAATAAAGATAAT-- ----AATGGCAAATTTAGAGGAAAAAAGAATCCCAATTACAAAAGTAAAATTGAAAGAGG GATGTACGGGTCCACATGTCCCACAAT-GGCCATTAACAGAAGAGAAATTAAAAGGTCTA ACAGAAATCATAGATAAATTAGTGGAAGAAGGAAAACTAGGAAAGGCACCCCCACATTGG ACATGTAATACTCCAATCTTTTGCATAAAAAAGAAATCAGG---GAAGTGGAGAATGTTA ATAGATTTCAGAGAATTGAACAAACAGACAGAAGATTTAACAGAAGCGCAGTTAGGACTC CCGCATCCGGGAGGACTACAAAAGAAAAAACATGTTACAATATTGGACATAGGAGATGCA TATTTTACTATACCCCTATATGAACCATATCGAGAGTACACATGTTTTACTCTATTAAGT CCTAATAATCTAGGACCATGTAAAAGATACTATTGGAAAGTGCTGCCACAAGGTTGGAAA TTGAGTCCATCTGTATATCAATTTACTATGCAGGAGATCTTAGAGGATTGGATACAGCAG CATCCA---GAAATTCAATTTGGCATATATATGGATGATATTTACATAGGAAGTGATTTA GAAATTAAAAAGCATAGAGAAATAGTGAAAGATTTAGCCAATTATATTGCCCAATATGGA TTCACTCTGCCAGAAGAGAAGAGACAAAA---------GGGATATCCAGCAAAATGGCTA GGATTTGAACTACACCCGCAGACCTGGAAATTTCAGAAGCATACATTA------CCTGAA TTAACAAAGGGAACAATAACATTAAATAAATTACAGAAATTAGTAGGAGAATTAGTATGG ---AGACAATCCATAATTGGGAAAAGCAT---------TCCTAACATTCTGAAATTAATG GAAGGAGATAGAGAATTACAAAGTGAAAGAAAAATTGAAGAAGTACATGTGAAAGAATGG GAAGCATGTAGGAAAAAATTAGAAGAAA---TGGAAGGAAATTATTATAATAAAGACAAA GATGTCTATGGACAATT---GGCTTGGGGAGACAAAGCTATAGAATATATAGTGTATCAG GAGAAAGG---------GAAAC------CATTATGGGTAA------ATGTGGTTCACAAT ATAAAGAACCTAAGCATCCCGCAACAGGTTATTAAAGCAGCGCAAAAATTAACCCAAGAA GTCATCATTAGGACAGGAAAAATACC-----------------ATGGATATTGTTGCCAG --------------GGAAAGAAGAAGATTGGAGACTAGAATTGC---AATTAGGGAACAT CA------CATGGATGCCAAAATTTTGGTCCTGTTATCGAGGACATACAAG--------A TGGAGAAAAAGAAATATAAT------------------AGAAGAAGTAGT---------A GAAGGGCCTACATATTATACAGATGGAGGA------AAAAAGAATAAAGTAGGAAGTCTA GGGTTCATAGTATCAACAGGGGAA---AAATTTAGAAAGCATGAAGAGGGCACAAACCAG CAACTAGAATTAAGAGCCATAGAGGAAGCTCTAAAAC---AAGGGCCTCAAACAATGAAT TTAGTAACAGATAGTAGATATGC------------------ATTTGAATTTTTATTAAGA AATTGGGATGAAGAA-GTAATAAAGAATCCAATTCAAGCAAGAATTATGGAAATTGCCCA CAAGAAAGATAGGATAGGAGTGCATTGGGTGCCAGGACATAAAGGG---ATTCCCCAAAA TGAAGAAATAGACAAATATATTTCGGAAA------TATTTCTTGCAAA------------ ---------AGAAGGAGAAGGAATTCTCCCAAAAAGAGAAGAGGAT------GCAGGGTA TGATTTAATATGCCCAG---AAGAGGTTACCATAGAGCCAGGACAAGTGAAATGCATCCC CATAGAGCTAAGATTAAATTTAAAGAAATCACAATGGGCTATGATTGCTACAAAAAGCAG CATGGCTGCCAAAGGAGTGTTCACACAAGGAGGAATCATAGACTCAGGATA-TCAGGGAC AAATACAGGTAATAATGTATAATAGCAATAAAATAGCAGTAGTCATACCCCAAGGGAGAA AATTTGCACAATTAATATTAATGGATAAAAAGCATGGAAAATTGGAACCCT---GGGGGG AAAGCAGAAAAACAGAAAGGGGAGAAAAAGGATTTGGGTCTACAGGAAT----------- -----------GTATTGGATAGAAAATATTCCTCTGGCAGAG-GAAGACCACAC-AAAAT GGCATCAAGATGCCCGATCATTGCATCTAGAATTTGAAATTCCAAGAACAGCAGCAGAAG ACATAGTAAATCAATGTGAAATATGCAAAGAAG------------CGAGGACACCTGCAG TAATTAGAGGCGGAAACAAAAGGGGGGTA------------AATCATTGGCAAGTGGATT ATACCCATTATGAAAAT------------ATCATACTATTAGTATGGGTAGAAACAAATT CAGGACTAATATATGCAGAAAAAGTAAAAGGAGAATCAGGGCAAGAA---TTCAGAATAA AAGTGATGCATTGGTATGCAT---TATTTGGTCCAGAGTCATTGCAGTCAGACAATGGAC CTGCATTTGCAGCAGAGCCCACACAGCTGTTAATGCAATACCTAGGAGTAAAACACACAA CAGGCATACCTTGGAATCCACAGTCTCAGGCTATAGTAGAAAGGGCACATCAACTATTGA AAAGCACTTTAAAGAAGTTCCAGCCACAATTTGTCGCTGTAGAATCAGCCATAGCAGCA- --------------GCCCTAGTCGCCATAAATATAAAAAGAAAGGGTGGGCTGGGGACAA GCCCTATGGATATTTTTATATATAATAAAGAACAGAAAAGAATAAATAATAAATATAATA AAA---------------ATTCT---CAAAAAATTCAATTCTGTTATTACAGAATAAGGA AAAGAGGACATCA---GGAGAGTGGAAAGGACCAACCCAGGTACTGTGGAAAGGGGAAGG AGCCAATTGTGGTAAAGGATATAGAAAGTGAAAAGTATTTAGTAATACCTTACAAAGATG CAAAATTCATCCCGC------------------------------------CACCAACAA AAGA-------AAAGGAATAA--------------------------------------- ------------------------------------------------------- [3] Ovine_lentivirus ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -----------------TCCAACATC---------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------ACAGCAGGGAAACAGCAGGAGG------------------- -----------------GGGCCACGTGTGGTGCCGTCCGCGCCC--CCTAT--------- ---------GTTGTAACAGAAGCACCACCAAAGATAGATATAAAGGTAGGGACAAATTGG AAAAAGGTATTAGTAGATACTGGGGCAGATAGAACTATAGTAAGATATCATGACAATTCG ----------------GGAATACCCACAGGGAGAATAAAACTACAAGGGATAGGAGGAAT AATAGAAGGA-GAAAAATGGGATAAAGTAGTAATACAATA---------------TAAAG AAAAAAGAATAGAAGGGACAATAGTGGTA---CTGCCCAGTAGTC--------------- ------CAGTAGAGGTATTAGGAAGGGATAATATGGCAAAATTAGACATAGGAATAAT-- ----TATGGCAAATTTAGAAGAAAAGAAAATTCCCATTACACAGGTAAAATTAAAAGAAG GCTGTAAGGGTCCTCATATAGCACAAT-GGCCTTTAACTCAAGAAAAATTAGAAGGCTTA AAAGAAATAGTGGACAAGTTAGAAAAGGAAGGAAAGGTAGGTAGAGCGCCGCCACATTGG ACATGTAATACTCCTATATTTTGCATCAAGAAAAAATCAGG---GAAATGGAGAATGTTA ATAGATTTTAGGGAATTAAATAAGCAAACAGAAGATTTGGCGGAGGCACAATTAGGTTTG CCGCATCCAGGGGGATTACAGAAAAAGAAGCATGTAACAATACTTGACATAGGGGATGCA TATTTTACAATACCATTGTATGAGCCATATAGACCATATACATGTTTTACCATGTTAAGT CCAAATAATTTGGGACCATGTACACGGTATTATTGGAAAGTACTACCACAAGGATGGAAG TTGAGTCCCTCAGTGTATCAATTTACAATGCAAGAAATATTAAGGGATTGGATAGCGAAA CATCCT---ATGATACAATTTGGAATATACATGGATGATATTTATATAGGGAGTGATTTG GATATAATGAAACACAGAGAGATAGTAGAAGAACTAGCTAGCTATATTGCCCAGTATGGA TTTATGTTACCAGAAGAAAAGAGACAAGA---------AGGGTATCCAGCAAAGTGGCTT GGATTTGAATTGCACCCAGAGAAATGGAGATTTCAGAAACATACACTT------CCAGAA ATAAAGGAAGGGACCATAACATTAAATAAATTACAAAAATTAGTAGGAGATTTAGTCTGG ---AGACAATCATTAATAGGAAAAAGCAT---------ACCTAATATACTAAAGTTAATG GAAGGGGATAGGGCGCTCCAAAGTGAAAGAAGGATAGAGCTCAGACATGTAAAGGAATGG GAGGAATGTAGAAGAAAATTAGCAGAAA---TGGAAGGAAATTACTATGATGAAGAGAAG GATGTATATGGACAAAT---AGATTGGGGAGATAAGGCAATAGAGTACATAGTGTTTCAA GAGAGAGG---------AAAAC------CTTTATGGGTAA------ATGTAGTACATAAT ATTAAAAACCTCAGTCAATCACAGCAAATTATTAAAGCAGCACAAAAACTTACGCAAGAG GTAATAATAAGGATAGGAAAAATACC-----------------ATGGATACTATTACCAG --------------GAAAGGAGGAAGATTGGATCTTAGAGTTGC---AAATAGGAAATAT AA------CATGGATGCCCTCATTTTGGTCGTGTTATAGGGGGTCAATAAG--------G TGGAAAAAGAGAAATGTAAT------------------AACAGAAGTAGT---------A GAAGGCCCGACATATTATACAGATGGAGGT------AAGAAGAATGGAAAAGGAAGTCTA GGATTCATTGCCTCTACAGGCGTT---AAATTTAGAAAACACGAAGAGGGAACAAATCAA CAATTAGAATTAAGAGCAATAGAAGAGGCGTGCAAAC---AGGGACCAGAGAAAATGAAT ATAGTAACAGATAGCAGATATGC------------------ATATGAATTTATGAGAAGA AATTGGGATGAAGAA-GTTATAAAGAACCCAATACAGGCTAGAATTATGAAATTAGTGCA TGATAAGGAACAGATAGGGGTACATTGGGTACCTGGACACAAAGGA---ATTCCTCAAAA TGAAGAAATAGATAAATATATTTCAGAAA------TATTTTTAGCAAG------------ ---------AGAAGGAAGCGGAATTCTTCCAAAAAGAGCGGAAGAT------GCAGGGTA TGATCTCATATGTCCGC---AGGAAGTGTGTATTCCAGCGGGGCAAGTAAGAAAAATTCC AATTAATCTAAGAATAAACTTAAAGGAGGATCAGTGGGCCATGGTAGGGACGAAAAGTAG TTTTGCAAGCAAGGGAGTATTTGTACAAGGGGGAATAATAGATTCAGGATA-TCAAGGCA TTATACAGGTAGTAGTATATAACAGCAATGACAAGGAAGTCATTATCCCACAAGGGAGAA AATTTGCACAATTAATTCTCATGCCTTTAATACATGAAGACCTAGAAGCTT---GGGGGG AAACTAGAAGGACAGAAAGAGGAAACCAAGGATTTGGATCAACGGGAGC----------- -----------ATATTGGATTGAAAATATTCCCCTAGCAGAG-GAAGATCACAG-TAAAT GGCATCAAGATGCTGGGTCATTACACTTAGACTTTGGGATACCCCGAACTGCAGCTGAGG ATATTGTACAACAATGTGAAGTATGTCAAGAAA------------ATAAAATGCCCAGCA CAATAAGGGGAAGCAATAGGAGAGGAATA------------GATCATTGGCAAGTAGACT ATACACATTATGAGGAC------------AAGATAATATTAGTATGGGTAGAAACAAATT CAGGATTAATATATGCAGAAAGAGTAAAAGGGGAAACAGGACAAGAA---TTTAGAATCA TGACTATAAGGTGGTATGGTC---TGTTTGCCCCAAAGTCATTGCAGTCTGACAATGGAC CAGCATTTGTAGCAGAGCCAACACAGCTACTAATGAAATATTTGGGGATAACACACACAA CAGGGATACCATGGAATCCCCAATCGCAAGCACTAGTAGAAAGAACTCATCAAACTCTAA AAAATACAATAGAAAAATTTGTTTCTATGTTTGCCTCATTTGATTCAGCAATAGCCGCA- --------------GCATTAATCACACTAAATATAAAAAGAAAGGGTGGGCTAGGGACAA GCCCTATGGATATATTCATATTTAATAAGGAACAGCAAAGAATACAACAGCAATCTACAA GAA---------------ATCAA---TCAAAATTTCGATTTTGTTATTACAGAGTCAGGA AAAGAGGACACCC--AGGCGAGTGGCTGGGACCAACACAGGTACTCTGGGAAGGGGAAGG AG-CAATCGTAATAAAAGATAAAAATCTAGAAAAGTATTTAGTCATAGCAAAAAAGGATG TTAAGTTCATACCGC------------------------------------AACCAAAAG AAAT-------ACAAACAGAATAA------------------------------------ ------------------------------------------------------- [4] Maedi_Visna_virus ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------------ATGCCAT----------CATTGT GGAA-------------AAAGAGGAC---------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------ATATGCAAAAGGACTGCC---------------GGCAGAAGA----- ------------------AACAGCAGGGAAACAACAGGAGG------------------- -----------------GGGCCACGTGTGGTGCCGTCCGCGCCC--CCTAT--------- ---------GTTGTAACAGAAGCACCACCCAAAATAGAAATAAAAGTAGGAACAAGGTGG AAAAAATTATTAGTAGATACAGGGGCAGATAAAACTATAGTAACATCCCATGATATGTCA ----------------GGGATACCAAAGGGAAGGATAATATTACAGGGCATAGGGGGAAT AATAGAAGGA-GAAAAATGGGAACAAGTACACTTGCAATA---------------TAAAG ATAAAATAATCAGAGGTACCATAGTGGTG---TTAGCTACGAGTC--------------- ------CGGTAGAAGTATTAGGAAGAGATAATATGAGAGAATTGGGAATAGGATTAAT-- ----TATGGCAAATTTAGAAGAAAAGAAAATTCCCAGTACAAGAGTAAGATTAAAAGAGG GATGTAAGGGACCCCACATAGCGCAAT-GGCCTTTGACGCAAGAAAAATTAGAGGGATTA AAAGAAATAGTAGACAGATTAGAGAAGGAAGGGAAAGTAGGAAGAGCGCCCCCACACTGG ACTTGTAATACCCCTATATTTTGTATTAAGAAGAAATCAGG---AAAATGGAGGATGTTA ATAGATTTTAGAGAATTAAATAAGCAAACAGAAGATTTAGCAGAAGCACAGTTAGGGTTA CCGCATCCAGGAGGATTACAGAGAAAGAAACATGTAACAATATTAGATATAGGAGATGCA TATTTTACAATACCATTATATGAGCCATATAGACAATATACATGCTTTACCATGTTAAGT CCAAATAATTTAGGACCATGTGTAAGATATTATTGGAAAGTGTTACCACAAGGATGGAAA TTAAGTCCTGCAGTGTATCAATTTACAATGCAAAAAATATTAAGAGGATGGATAGAAGAA CACCCT---ATGATACAATTTGGAATATACATGGATGATATCTATATAGGGAGTGATTTA GGACTAGAAGAGCACAGGGGTATCGTGAACGAACTAGCATCATATATAGCGCAATATGGA TTCATGCTGCCTGAAGATAAGAGGCAAGA---------AGGATACCCGGCTAAATGGCTT GGATTTGAATTGCATCCGGAGAAATGGAAATTTCAAAAACATACGCTC------CCAGAG ATTACAGAAGGACCCATAACCTTGAATAAACTACAGAAATTAGTAGGAGATTTAGTTTGG ---AGACAATCCCTAATAGGAAAAAGCAT---------CCCAAATATCTTAAAATTAATG GAAGGAGATAGGGCTTTACAAAGTGAAAGATACATAGAGAGTATACATGTAAGAGAATGG GAAGCCTGTAGACAAAAGCTGAAGGAAA---TGGAAGGAAATTATTATGATGAAGAGAAG GATATCTATGGGCAACT---AGATTGGGGAAATAAAGCAATAGAATACATAGTATTTCAA GAAAAAGG---------AAAAC------CTTTATGGGTAA------ATGTAGTACATAGT ATTAAGAATTTGAGTCAAGCCCAACAAATTATCAAAGCAGCACAAAAACTGACACAAGAA GTAATAATAAGAACAGGCAAGATACC-----------------CTGGATTTTGTTGCCGG --------------GAAGGGAAGAAGATTGGATATTAGAGTTAC---AAATGGGAAACAT AA------ATTGGATGCCATCATTTTGGTCATGTTATAAAGGCTCGGTGAG--------G TGGAAAAAGAGGAATGTAAT------------------AGCGGAAGTAGT---------C CCAGGACCAACATATTATACCGATGGAGGA------AAGAAAAATGGGCGGGGAAGCCTG GGGTATATTACCTCCACAGGTGAA---AAGTTTAGAATACATGAAGAAGGGACAAATCAG CAGTTAGAATTGAGGGCCATAGAAGAGGCATGTAAAC---AGGGACCAGAAAAAATGAAT ATAGTAACAGATAGCAGGTATGC------------------ATATGAATTTATGTTGCGG AACTGGGACGAAGAA-GTAATAAGAAACCCTATACAAGCGAGAATCATGGAATTAGTGCA TAATAAAGAAAAAATAGGGGTACATTGGGTGCCTGGACACAAGGGG---ATTCCTCAAAA TGAAGAAATAGATAGGTATATCTCAGAAA------TATTTTTAGCAAA------------ ---------AGAGGGAAGAGGGATTTTACAAAAAAGGGCAGAAGAT------GCTGGATA TGACTTAATATGTCCAC---AGGAGATAAGCATTCCGGCGGGGCAAGTGAAAAGGATAGC AATTGACTTGAAAATAAATTTGAAAAAGGACCAGTGGGCCATGATAGGGACCAAAAGCAG TTTTGCAAATAAGGGAGTATTCGTACAAGGAGGTATCATAGATTCGGGATA-TCAAGGAA CAATACAAGTAGTGATATATAATAGTAATAATAAAGAAGTAGTAATACCACAGGGAAGAA AATTTGCACAGTTGATCCTCATGCCTCTAATACATGAAGAGTTGGAGCCAT---GGGGAG AAACAAGAAAAACAGAAAGAGGGGAACAAGGATTTGGATCAACAGGGAT----------- -----------GTATTGGATAGAAAATATTCCCCTAGCAGAA-GAAGAGCATAA-CAAAT GGCATCAAGATGCTGTGTCCTTGCATTTAGAATTTGGGATTCCCAGGACAGCTGCAGAAG ATATAGTTCAACAATGTGATGTGTGTCAAGAAA------------ATAAAATGCCTAGTA CATTAAGAGGCAGTAATAAAAGGGGCATA------------GACCATTGGCAAGTAGACT ATACCCACTATGAAGAC------------AAGATAATATTGGTCTGGGTAGAAACAAATT CAGGACTAATCTATGCAGAGAGGGTAAAAGGAGAAACAGGACAAGAA---TTTAGGGTGC AAACTATGAAATGGTATGCGA---TGTTTGCCCCGAAATCATTGCAGTCTGATAACGGAC CAGCATTTGTAGCAGAATCTACTCAGCTCTTAATGAAATATTTGGGCATAGAACATACTA CAGGGATCCCCTGGAACCCACAATCTCAAGCATTAGTAGAGAGAACACATCAGACGTTAA AGAATACATTAGAAAAACTTATACCTATGTTTAACGCGTTTGAATCAGCCCTCGCAGGG- --------------ACCCTCATTACTCTAAATATAAAAAGAAAGGGTGGGCTAGGGACAA GCCCTATGGATATATTTATATTTAATAAGGAACAACAAAGAATACAGCAACAAAGTAAAT CAA---------------AACAA---GAAAAAATTCGATTTTGTTATTACAGAACAAGAA AAAGAGGGCATCC--AGGAGAGTGGCAAGGACCAACACAGGTACTTTGGGGCGGGGACGG TG-CGATTGTAGTGAAAGACAGAGGCACAGATAGATATCTGGTGATAGCTAACAAAGATG TTAAGTTCATACCGC------------------------------------CACCAAAAG AAAT-------ACAAAAAGAATAA------------------------------------ ------------------------------------------------------- [5] FIVaju_Cheetah ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------------CCCTAATAAT CCTTGGAACACTCCAATCTTTTGCATAAAGAAAAAATCAGG---AAAATGGAGGATGTTA ATAGATTTTAGATGCCTAAATGATTTAACAGAAAAGGGAGCAGAAGTACAACTAGGATTG CCTCATCCAGCTGGATTACAAGAAAGAAAGCAAGTAACAGTTTTAGACATAGCAGATGCA TATTTTACAATTCCATTAGATCCAGAATATGCTCCATATACAGCATTTACTCTGCCAAAA ATAAATAATGCAGGTCCTGGAGAAAGATTTGTATGGTGTAGTTTACCACAGGGATGGGTC TTAAGTCCTTTGGTTTATCAAAGTACTTTAAACAATATTTTAAAACCATTTAGGGAAAAG CATCCA---GAAATAGATTTATATCAATATATGGATGATATTTATATAGGATCAGATTTA AATAAAGAAAGACATAGAGAGATAGTG--------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------- [6] FIVOma_Pallas_Cat ------------------------------------------------------------ -----------------------------------ATGTGGCAAAGCAGGCCATATTGCA ACAGATTGTTGGGACATGCAGGGAAAGCAGCAGGGAAACTG-------------GCAGAA GGGGAGA----------GCTGCTGCCCC----TATCAAACAAGTGCAG------------ ---------------------------------------------------------CA- --ATTTCAAACAGCAGTATCAACAACTCAGAATCAGCAA--------------------- ---------------------------------CAATGTCAATTAATACAGCCTTCGGCT CCTCCAATGGAGTCCCTTATGGACATCTAAA----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --GAGAGATATAGAATTAATACATAGACCAAGAATTTTGATCTATGTAAATGGGATTCCT ATAAGATTTTTAATGGATACAGGAGCAGATATAACTATAATGAATGCAGAAGATTTTAAT ATATT-------AAATTCAATCCCAGATGGAATACAAACAATGATAGGAGTAGGAGGAGG AAAAAGAGGT-AGAAAATTTAGACGAGTACATTTAGAAAT---------------AAGAG ATCCTAATCATAGAGCTCAATGTTTATTT---GGAAATATGTGTATCTTAGATGACAATA GTTTAACAGAACCTCTGCTAGGGAGAGATAATATGGTTAGATTTGGAGCAAAGTTGGT-- ----AATGGCAAATATTTCAAATA---AAATTCCTATAGTAAAAGTGAAAATGAAAGATC CTAGCAAAGGACCAAAAATTAAGCAAT-GGCCTCTATCAAAAGAAAAGATAGAAGCATTA ACAGAAATAGTTTATAGATTGGAAAAAGAAGGGAAAGTAAAAAGGGCAGATCCAAATAAT CCTTGGAATACCCCTATTTTCTGTATAAAAAAGAAATCAGG---GAAGTGGAGAATGTTA ATAGATTTTAGAACTCTGAATGAATTAACAGAAAAAGGTGCAGAAGTTCAGTTGGGACTC CCTCATCCAGCAGGATTACAAGAAAGGAAACAAGTAACAGTATTAGATATTGCAGATGCA TATTTTACTATACCATTAGACCCAGACTATGCACCATATACTGCCTTTACTCTGCCCAAA ATAAATAATTCAGGTCCAGGAGAAAGATTTGTATGGTGTGGTTTACCTCAAGGATGGGTA TTAAGTCCCTTAATTTATCAGAGTACATTAAACAATATTTTAAAACCATTTAGAGAACAG CATCCA---GAAATAGATTTATACCAATATATGGATGATATATATATAGGATCAGATTTA GGAAAGAAGGAGCATAAACAAATTGTAGAGGAATTAAGGAAATTATTATTATGGTGGGGA TTTGAGACGCCAGAAGACAAATTACAGGA---------GCAACCACCTTATAAATGGATG GGATATGAATTATATCCTCGGAAATGGACTATACAAACAAAAGAATTA------ATAATA CC------AGAAGAACCAACTCTTAATGAGTTACAGAAGTTAGTAGGAATAATAAATTGG TCATCTCAAATAATTCCTGGATTAAGAAT---------TAAGGCTTTAACTAATATGATG AAAGGAAATCAAGCTTTAGATTCAAAAAGAAGGTGGACAGAAGAGGCTAAGAAAGAGGCA GAAGAGGCAAAATTGGCAATAGAACAACACACACAATTAGGATATTATGATCCTCAACAA CAATTACATGCAAAATTGAGTATAGTGGGTCCACATTGTATAGGGTACCAAGTTTATCAA AAAGGGT---CTCCAGATAAAA------TATTATGGTATGGAAAAATGAATAGACAAAAG AAAAAAGCAGAAAATACTTGCGACATAGCCTTAAGAGCTATATATAAGATCAGGGAAGAA TCAATAGTAAGGTTAGGAAAAGAACC-----------------TATTTATGAAATACCAT --------------GTTCTAGAGAAGCATGGGAATCAAATTTGATTAATACTCCTTATTT AA---AAGCTTGCCCACCACAAGTAGAGTATATTCATGCAGCAATAATGATA-----CAG AGGTCTTTAAGTATGATAAA------------------AGAAGAACCAATTAG------A GGTGCAGAAACATGGTATATTGATGGAGGA---AGGAAGAAGGGACAATCAGCAAAGGCG GCATATTGGACTGATAAAGGAAAATGGGAAGTAATGCAAATAGAA---GGGAGTAATCAA AGAGCAGAGGTAATGGCCCTATTAATGGCATTACGAT---CAGGGGGAGAAGAAATGAAT ATTGTAACAGATTCTCAATATAT------------------CCTAAATATTTTGAGACAA AAACCAGAT----------TTGATGGAGGGATTATGGCAAGAAATATTGGAAGAAATAGA AAAGAAGGTAGCAATTTTTATAGATTGGGTACCAGGTCATAAAGGC---ATTCCTGGGAA TACAGAAGTAGATAACCTATG------------------TCAAACAAT------------ GATGATAATATCAGGAAATGGAATATTAGATAAAGGAGAAGAGGAC------GCAGGATA TGATTTGCTTGCAGAAC---AAGACATACATTTAATGCCAGGAGAAGTAAGAATAGTCCC TACAGGAGTAAGATTAATGCTGCCAAAAGGACATTGGGGAATGGTAGTAGGAAAATCTTC AATTGCAAAGCAAGGATTGGATGTTCTTGGAGGAGTAATAGATGAAGGATA-CAGAGGGG AAATAGGTGTAATTATGATAAATTTACAGAAAAGATCTATTACTTTAAAAGAAAAGCAAA AGGTAGCACAATTAATAATCATACCTTGTAAACATGAAGAATTGAAACAAG---GGGAAA TAGAATTAAATTCAGAAAGAGGAGAAAAAGGGTATGGATCAACAGGTGCATTTGC----- -----------ATCTTGGATGAATAACATTGAAGAGGCAGAA-ATCAACCATGA-AAAAT TTCATTCAGATCCAGAATTTTTAAGGACTGAATTTGGGCTTCCCAAACAAGTTGCAGAAG AAATAAAAAGAAAATGTCCTCTATGTATAGTGC------------AAGGGGAA------C AAGTAATGGGAAAATTAAAAGTAGGACCA------------GGAATATGGCAAATTGATT GTACTCATTTAGAAGGA------------AAGATTATACTGGTCGCAGTAAACACAGAAT CAGGATACATTTGGGCAAGAATAATTCCTCAAGAGACAGCAGATATG---ACAGTAAAAT ATCTATTACAATTAATCTCGG---AGCATCATGTGACTGAATTACAATCAGATAATGGAC CAAATTTTAATAATGCAAAAGTAGAAGGCATGACAGGATTTTTGGGAATAAAACATAAAT ATGGAATTCCAGGAAACCCTCAATCACAAGCCTTGGTAGAAAATACCAATAGAATGTTAA AAGAATGGATAAAGAAATTTAGAGGGGAAGTAACTACTTTGGATGCAGCATTGGCACTT- --------------GCACTTTATGCTCTTAACTTTAAACAAAGGGGTAGAATAGGGAGAA TATCCCCATATGAGTTACTTATACAGCAAGAATCAGACAGAATAAGAGATTACTTTTCTA AAA---TACCA-GCAAATAATATA--AAAAATTCTTGGATTTATTAT---------AAGG ATAGAAGAGATAA-----AGAATGGAAGGGTCCAACACAGGTAGAATATTGGGGACAAGG AG-CAGTTTTAATAAAACA---TCCAGAGCATGGGTATATGCTCATCCCTAGGAGACACA TAAGGAGAGTTCCA------GAACCCTGTACTC------------------TTCCAGAAG TGGA-----------ATGA----------------------------------------- ------------------------------------------------------- [7] FIVPleE_Lion ------------------------------------------------------------ -----------------------------------TTGTGGAAAAACAGGACATATATCT ACAGATTGTTGGAATATAAAAGGGAAGCCACAGGGAAACTG-------------GCAGCA GGGGAGA----------GCTGCTGCCCC----TGCCAAACAAGTGCAG------------ ---------------------------------------------------------CA- --ATTTCAGACAGCTGTACCAATGGT------ACCTCAG--------------------- ---------------------------------CAGACTGCACCTGTGCAGCCATCAGCA CCACCAATGGAATCCCTATTGGAAATGTAAA----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --AAGGGATATTTACTTAAGTAATAGACCAAAATTGTTAATTTATGTAAATGGGATTCCC ATAAAATTCTTAATGGATACAGGGGCTGATATTACTATAATGAATGCTGAGGATTTTAAT ATTTT-------AAACTCAATACCAGATGGCATTCAGACAATGATCGGTGTAGGGGGAAG AAGAACAGGA-AGAAAATTTAGAAGAGTACATTTAGAAAT---------------CAGAG ATCCTGATTTTAAGCCTCAATGTATATTT---GGAAATATGTGTATATTAGATGATAATA GTTTGACAGAACCATTGTTGGGAAGAGATAATATGACAAGGTTTGGAGCAAAATTAGT-- ----AATGGCACAAATATCAGATA---AATTACCTATAGTAAAGGTAAAGATGAAAGATC CAAGTAAAGGTCCTCAAATAAAGCAAT-GGCCTCTATCGAGAGAAAAGATAGAAGCATTA ACAGAAATAGTATATAGATTGGAAAAAGAAGGAAAAGTGAAAAGAGCAGATCCTAACAAT CCTTGGAATACTCCAGTGTTTTGTATAAAGAAAAAATCAGG---AAAATATAGGATGTTA ATAGATTTTAGATGTTTGAATGATCTTACTGAAAAAGGAGCAGAAGTTCAATTAGGATTA CCTCACCCTGCGGGATTAAAAGAAAGAAAACAAGTAGCAATACTAGACATTTCAGATGCT TATTTTACTATCCCATTAGATAAAGACTATCAGCCTTATACCGCCTTTACTTTACCAAAA TTAAACAATCAAGGTCCTGGAGAAAGATTTGTTTGGTGTTCCCTTCCACAAGGATGGGTG TTGAGCCCGTTAATATATCAAAGTACCCTTAATAATATATTAAAACCTTTTAGAGAAAAA CATCCT---GAGATAGATCTATATCAATATATGGATGATCTTTATGTAGGGTCTGATTTA TCTAAGAAAGAGCATAAAGCAATAGTAGAAGAGTTAAGACAACTATTATTATGGTGGGGC TTTGAAACCCCAGAAGAAAAATTACAGGA---------AGAACCTCCATTTAAATGGATG GGTTATGAATTATATCCTAAGAAATGGACAATTCAAACAAAAGAATTA------AAAATA CC------AGATATTCCTACCCTTAATGAGTTACAAAAATTAGTAGGAATAATAAATTGG TCATCACAGATAATACCAGGATTAAAAAT---------AAAAGCATTAACAAATATGATG AAGGGCAATCAAGCTTTAGATTCAATAAGAGAATGGACACCAGAAGCTAGACAGGAAGCA GAAGAAGCAAAATTAGCAATCGAACAACACACACAATCGGGATATTATGATCCCAAGAAA GAAGTGTATGCTAAATTAAGCATCGTAGGTCCACATAGTATAGGTTATCAGGTATATCAA AAGGAAA---TACCAGAAAAAG------TACTTTGGTATGGAAGGATGAATAGACAAAAG AAGAAAGCAGAAAATACATGTGATATAGCCTTGAGGGCTATATACAAGATTAAGGAAGAA TCTATAATTAGGATAGGAGTAGAGCC-----------------AATTTATGAAATTCCAT --------------GTTCTAGAGAAGCTTGGGAATCAAATTTAATATCGACACCTTATTT AA---AGGCTAGTCCACCGAAAGTAGAATTTATTCATGCTGCATTAATGATG-----CAA AAATCATTGGCAATGATTAA------------------GGAAGATCCGATCCC------A GATACAGAAACTTGGTATATAGATGGGGGA---AGAAAGAAAGGGCAACCAGCAAGAGCA GCATATTGGACAGATAAAGGTAGATGGGAAGTAATGCAATTGGAA---GGAAGTAATCAA AAAGCAGAAATTATGGCCTTATTAATGGCCTTAAAGG---CAGGAGGAAAAGAAATGAAT ATAATAACAGATTCACAATATAT------------------TATAAATGTATTAAAACAA AAACCAGAT----------ATGATGGAGGGGATATGGCAAGAGGTATTAGAAGAAATGGA AAAGAAAACAGGATTATATATAGATTGGGTACCTGGACATAAAGGA---ATACCTGGGAA TATGGAAGCAGATCAGCTCTG------------------TCAAACAAT------------ GATGATTATATCAGGAAATGGTATTCTAGAAAAAAGAAAAGAAGAT------GCAGGATA TGATCTTTTAGCAGAAC---AAGAAGTTCACTTAATGCCAGGAGAAGTTAGAATAATACC CACAGGAGTAAAATTAATGTTACCAAAAGGACACTGGGGTATGGTAGTAGGAAAATCATC AATAGCAAAACAAGCATTAGATGTATTGGGAGGAGTAATAGATSAWGGATA-TAGAGGGG AAATAGGAGTTATTATGATGAATTTAGGAAGGAAGAGTATAACTTTAAAAGAAAAACAGA AAATAGCACAATTAATTATAATTCCATGTAAACATGAAGAGCTCCAACAAG---GAGAAA TAATATTAGATTCAGAAAGAGGAGAAGGAGGATATGGATCTACAGGGGCRTTTGC----- -----------CTCGTGGATAGATAAAATAGAAGAAGCAGAA-TTAAATCATGA-AAAAT TTCATTCAGATCCAGAATATTTAAGAACAGAATTTGGGCTTCCCAAACAAGTAGCAGAAG AAATAAAARGAAAATGCCCACTTTGTATAATAC------------AAGGTGAA------C AACCGATGGGAAAATTAAAAATAGGTCCA------------GGAATATGGCAAGCAGATT GTACTCATTTGGAGGGA------------AAAATTATATTAGTGGCAGTAAATACAGAAT CAGGTTATATATGGGCAAAAATATTACCTCAAGAAAATGCTGAGACT---ACTGTAAAAG CATTTTTACAATTAATATCAG---AACATCATGTTACAGAAATTCAAACAGATAATGGTC CTAATTTTAATAATTCAAAAATGGAAGGAATGGTAGGTTTTTTAGGGATAAAACATAAAT TTGGAATCCCAGGAAATCCACAATCTCAAGCTTTAGTTGAAAATACAAATAAAACATTAA AAAGATGGATAGACAAATTTAAGGGAGAAGTTACAACATTAGAAGCAGCATTAGCTTTA- --------------GCAGTCTATGCTCTTAATTTTAAGCAAAGGGGTAGAATAGGGGGAA TATCCCCATATGAACTATTGATACAACAAGAATCAGAAAGAATAAAAGAYTATTTCTCAC AAA---TTCCT-ACAAAAAATTTA--AAAAATTCTTGGATTTATTAT---------AAGG ATAGAAGAGATAA-----AGAATGGAAAGGTCCAATACAAGTAGAATATTGGGGACAAGG AG-CAGTCCTTGTCAAACA---CCCAGAACAAGGATATATCCTCATACCTAGGAGACACA TAAGGAGAGTTCCA------GAGCCCTGTACTC------------------TTCCAGAAG TGGA-----------ATGA----------------------------------------- ------------------------------------------------------- [8] FIVlru_Bobcat ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------TGGAAAGATTAGAAAAAGAAGGAAAAGTTAAAAGAGCAGATCCTAATAAT CCTTGGAATACTCCAATATTTTGTATTAAGAAGAAATCAGG---GAAATGGAGAATGTTA ATAGACTTTAGAGAATTGAATAAATTAACTGAAAAAGGAGCAGAAGTTCAGTTGGGATTA CCTCATCCAGCTGGTCTTCAACAAAGAAAACAAGTTACAGTATTAGATATTGGAGATGCC TATTTTACCATACCATTGGATCCAGAATATCAACCATATACTGCTTTTACTTTACCTAAT AAAAATAATCAAGGACCAGGGAGAAGATATGTTTGGTGTAGTTTACCTCAAGGATGGGTT CTTAGTCCATTAATATATCAGAGTACTTTAGATAATATTTTAACACCATGGAAAAGAAAA CATCCA---GAAGTAGATTTATATCAGTATATGGATGATATTTATGTTGGAACAGATTTC AGTAAAGTAGAACATAAAAATGTAGTAGAAGAATTAAGACAATTATTATTCTTTTGGGGA TTTGAGACCCCAGAGGATAAGTTACAGGA---------GGAACCTCCCTACAAATGGATG GGATATGAACTTCATCCTACCAAATGGACTATTCAAAGTAAAAGTTTA------GAAATA CC------AGAAATACCTACCTTGAACCAATTACAAAAATTGGTGGGAATCATTAATTGG GCGACTCAAAATGTAGGAGGCATTAAAAT---------AAAAGCATTGACAGATTTAATG AAAGGTAACCAACAATT------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------- [9] FIVfca_Domestic_cat_Subtype_C ------------------------------------------------------------ ------------------------------------------------------------ -----CTGCTGGCAGGGAGGAAAAAAGAACCAGGGAAACTG-------------GAAGAA GGGGCGA----------GCTGCAGCCCC----GGTAAATCAAGTGCAG------------ ---------------------------------------------------------CAA GCAACAATGCCATCTGCTCCTCCAATGGAAG----------------------------- -------------------------------------------------------AGACA TTGTTAGATTTATAAATTATAATAAAGTGGG----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --TACCACTACAACATTAGACAGAAGACCTGAAATACTAATATTTGTAAATGGGTACCCT ATAAAATTTTTATTAGATACTGGGGCAGATATAACAATTTTAAATAGGAGAGATTTTCAA GTAAA-------GAATTCTATAGAAAATGGGAAACAGAATATGATTGGAGTAGGTGGAGG AAAAAGAGGA-ACAAATTATTGTAATGTACATCTGGAAAT---------------CAGAG ATGAAAATTATAAAACACAATGTATATTT---GGCAATGTTTGTGTTTTAGAAGATAATT CACTAATTCAACCATTGTTGGGTAGAGATAACATGGTTAAATTTAATATTAGATTAGT-- ----AATGGCTCAGATCTCAGATA---AAATTCCCATAGTGAAAGTAAAAATGAAAGATC CTAATAGAGGACCACAAATAAAACAGT-GGCCACTGTCAAATGAAAAAATTGAAGCTTTA ACAGAAATAGTAGAAAGATTAGAGAAAGAAGGAAAAGTAAAAAGAGCTGATCCAAATAAC CCTTGGAATACACCAGTATTTGCTATTAAGAAGAAAAGTGG---GAAATGGAGAATGCTT ATAGACTTTAGAGAGCTAAATAAATTAACTGAAAAGGGAGCAGAAGTCCAGCTGGGACTA CCTCACCCTGCTGGATTACAGTTAAAGAAACAAGTAACTGTATTAGACATAGGGGATGCC TACTTTACCATTCCCCTCGATCCAGATTATGCTCCTTACACAGCATTTACTTTGCCTAGA AAAAATAATGCAGGGCCAGGAAGGAGATATGTGTGGTGCAGTCTACCACAGGGATGGGTA TTAAGCCCACTAATATATCAAAGTACACTGGATAATATAATACAACCTTTTATTAGACAA AATCCT---CAATTAGACATTTACCAATATATGGATGATATATATATAGGATCTAATTTA AGTAAAAAGGAACATAAAGAAAAGGTAGAAGAATTAAGAAAGTTATTATTATGGTGGGGA TTTGAAACCCCAGAAGATAAATTACAGGA---------AGAACCCCCATATAAATGGATG GGTTATGAATTACATCCATTAACATGGACAATACAACAGAAACAATTA------GAAATT CC------AGAGAGACCTACTTTAAATGAATTACAAAAATTGGCAGGGAAGATTAATTGG GCAGGTCAGATCATTCCAGATTTATCTAT---------AAAAGCATTAACTAGAATGATG AGAGGTGATCAGAATTTAAATTCAATAAGAGAATGGACTGATGAGGCCAAAATGGAAGTA CAAAAAGCCAAAGAGGCAATTGAAAAACAGGCACAATTAGGATACTATGATCCTAATAAG GAAGTGTATGCAAAATTGAGTATAGTAGGGCCACACCAGATCTGTTATCAGGTGTATCAT AAAAA------CCCAGAACAAA------TTTTATGGTATGGGAAAATGAGTAGGCAGAAG AAAAAGGCTGAAAATACTTGCGACATAGCTTTAAGAGCATGTTACAAGATAAGAGAAGAA TCTATTGTAAGGATAGGAAAGGAACC-----------------AATATATGAAATACCAT --------------CAAGTAGAGAAGCCTGGGAATCAAATTTAATTAATTCACCATATCT AA---AAGCTCCGCCACCTGAAGTAGAGTTTATCCACTCTGCCTTAAATCTA-----AAG AGAGCACTAAGTATGGTACA------------------GGATAAACCCATCTT------A GGAGCAGAAACATGGTATATAGATGGAGGG---AGAAAGCGGGGAAAGGCAGCAAAAGCA GCTTACTGGACAGATACAGGGAAATGGCAGGTAATGGAAATAGAA---GGAAGCAATCAA AAGGCAGAAGTTCAAGCATTATTATTAGCATTAAAAG---CAGGACCAGAAGAGATGAAT ATAATAACAGATTCTCAATATAT------------------AGTAAATCTTATTAGTCAA CAACCTGAT----------ATGATGGAAGGAGTCTGGCAAGAAGTATTAGAAGAACTGGA AAAGAAAGTAGCAATATTTATAGATTGGGTTCCAGGACATAAAGGC---ATTCCAGGAAA TGAAGAAGTAGATAAGCTCTG------------------CCAAACAAT------------ GATGATTGTAGAAGGAGATGGAATATTAGAAAAAAGAGCAGAGGAT------GCAGGGTA TGACTTGTTAGCTGCAA---AAGAAGTACATTTACTGCCAGGAGAAGTAAAAGTAATTCC AACAGGAGTAAGATTAATGTTACCTAAAGGACATTGGGGATTGATACTTGGAAAAAGTTC AATGAGCAGCAAAGGATTAGATGTGCTAGGAGGAGTGATAGATGAAGGATA-TAGAGGAG AAATTGGGGTAATAATGATTAACTTGTCAAGAAAATCAATAACTTTACAAGAAAAACAAA AGGTAGCACAATTAATAATACTACCATGTAAACATGAAAATTTAGAACAAG---GAGAAA TAATAATGAATTCAGAGAGAGGAGAAAAAGGATATGGATCAACAGGAATATTTTC----- -----------CTCCTGGGTTGAAAGGATTGAAGAAGCAGAA-ATAAATCATGA-AAAAT TTCATTCAGATTCACAGTATTTGAGGACTGAATTTAAGTTACCCAGAATGGTGGCTGAAG AAATAAAAAGAAAATGCGCTCTATGTAGAATTA------------GAGGAGAA------C AGGTGGGAGGACAATTAAAAATTGGACCA------------GGAATTTGGCAAGTGGATT GCACACATTTTAATAAT------------GAAATAATTCTTGTGGCAATTCATGTCGAAT CAGGATTCCTTTGGGCACAAATAATACCACAAGAAACAGCTGACTGC---ACAGTCAAAG CAATAATGCAACTCCTAAGTG---CTTATAATGTTACAGAACTGCAAACAGACAATGGGC CAAATTTTAGAAATCAAAAAATGGAAGGTTTACTCAATTACATGGGAATAAAACATAAAT TTGGAATACCAGGCAACCCTCAATCTCAAGCTTTGGTTGAAAATGCCAATAATACTTTAA AGTGTTGGATTCAGAAGTTTTTGCCTGAAACAACATCTTTAGACAATGCTTTGGCTCTC- --------------GCTCTGCATTGCCTTAATTTTAAACAAAGGGGTAGAATAGGGGGAA TGGCCCCATATGAATTATTAACACAACAAGAATCATTAAGAATACAGGATTATTTTTCTC AAA---TTC----CAAGCAAATTG--CAAAGTCAGTGGATTTACTAT---------AAAG ATCAAAAAGACAA-----AAATTGGAAAGGACCAATGAGAGTAGAGTATTGGGGACAAGG AT-CAGTGTTATTAAAGGA---TGAAGAGAGGGGATATTTTCTTGTACCTAGGAGGCACA TACGGAGAGTCCCA------GAACCCTGCACTC------------------TTCCTGAAG GGGA-----------TGAGTGA-------------------------------------- ------------------------------------------------------- [10] FIVfca_Domestic_cat_TM2 ------------------------------------------------------------ ------------------------------------------------------------ -----------------------GAAAACCTCGGGAAACGA-------------GAAGGT GGGGCGA----------GCTGCAGCCCC----AGTAAACCAAGTGCAG------------ ---------------------------------------------------------CA- --AATAGTACCATCTGCACCTCCAATGGAGG----------------------------- -------------------------------------------------------AGAAA CTATTAGATTTATAAACTATAATACAATAGG----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --TACTACCACAACTTTGGAAAGAAGACCTGAAATACAAATTTTTGTAAATGGACACCCT ATAAAATTTTTATTAGATACAGGAGCAGATATAACAATTTTAAATAGAAAAGATTTTCAA ATAGG-------AAATTCTATAGAAAATGGGAAACAGAATATGATTGGAGTAGGAGGAGG AAAAAGAGGA-ACTAATTATATCAATGTACATCTAGAAAT---------------TAGAG ATGAAAATTATAGGATGCAATGTATATTT---GGAAATGTGTGTGTTCTAGAAGATAATT CCTTAATCCAACCATTATTAGGAAGAGATAACATGATTAAGTTTAATATAAGATTGGT-- ----AATGGCTCAAATTTCAGAAA---AGATTCCAATAGTAAAAGTGAGGATGAAGGACC CTACTCAAGGGCCTCAGGTAAAACAGT-GGCCATTATCAAATGAAAAAATTGAAGCTTTA ACAGACATAGTAGAAAGATTAGAATCAGAAGGAAAAGTGAAAAGGGCTGACCCGAATAAT CCTTGGAATACCCCAGTATTTGCTATTAAGAAGAAGAGTGG---TAAATGGAGGATGCTC ATAGATTTTAGGGTCCTAAATAAATTAACAGACAAAGGAGCAGAAGTCCAGTTAGGACTT CCTCATCCTGCTGGATTACAAATGAAAAAACAAGTAACGGTGTTGGATATAGGGGATGCA TATTTTACCATTCCTCTAGATCCAGATTATGCTCCTTATACTGCATTTACATTACCTAGG AAAAATAATGCAGGGCCAGGGAGGAGATATGTATGGTGCAGTTTACCACAGGGGTGGGTT TTAAGTCCATTAATATATCAGAGTACCTTAAACAATATATTACAGCCATTTATCAAACAA AATTCT---GAGTTAGATATTTACCAATATATGGATGATATATATATAGGATCAAATTTA AATAAAAAAGAACATAAACAAAAAGTAGAAGAATTAAGAAAATTGTTATTATGGTGGGGA TTTGAAACCCCGGAAGACAAATTACAAGA---------AGAGCCCCCATATAAGTGGATG GGCTATGAATTACATCCATTAACATGGTCAATACAGCAAAAACAATTA------GAAATT CC------AGAAAGACCCACATTAAATGAACTACAGAAATTAGCAGGTAAAATAAACTGG GCCAGTCAGACTATCCCAGACTTAAGTAT---------AAAAGAACTAACTAACATGATG AGAGGAGATCAGAAATTAGACTCAATAAGAGAATGGACTGTAGAAGCCAAGAGAGAAGTA CAAAAAGCTAAGGAGGCTATTGAGACGCAAGCACAGCTAAATTATTATGATCCCAATCGA GGATTATATGCAAAATTGAGTTTAGTGGGACCACATCAAATATGTTATCAAGTGTATCAA AAGAA------CCCAGAACACA------TTTTATGGTATGGTAAGATAAATAGACAAAAG AAAAAAGCAGAAAATACCTGTGATATAGCTCTAAGGGCATGTTATAAAATAAGAGAAGAG TCTATTATAAGAATAGGAAAAGAACC-----------------AGTATATGAAATACCTG --------------CATCCAGAGAGGCCTGGGAATCAAATCTAATTAGATCTCCATACCT TA---AGGCCCCACCACCTGAGGTAGAATTTATACATGCAGCCTTAAGTATA-----AAA AGGGCTCTAAGCATGATACA------------------AGATGCCCCTATAAT------A GGAGCAGAAACATGGTATATAGATGGGAGT---AGAAAACAAGGAAAAGCAGCAAGAGCA GCCTATTGGACAAATACAGGCAAATGGCAGATAATGGAGATAGAA---GGAAGTAATCAA AAAGCAGAGGTACAGGCTTTATTATTGGCCTTAAAAG---CAGGATCAGAAGAAATGAAT ATCATAACAGATTCACAATATAT------------------TTTGAATATTCTCAACCAA CAACCAGAT----------TTGATGGAAGGACTATGGCAAGAGGTCTTAGAACAAATGGA AAAGAAAATAGCAATTTTTATAGACTGGGTTCCTGGGCATAAAGGT---ATACCAGGAAA TGAAGAAGTAGATAAACTTTG------------------CCAAACAAT------------ GATGATTATAGAAGGTGAGGGGATATTAGAGAAAAGATCAGAAGAT------GCAGGATA TGACTTATTAGCTGCAGCACAAGAAACACATTTCTTGCCTGGAGAGGTAAGAATAGTACC AACAAAAACAAGAATAATGCTACCAAAAGGACACTGGGGACTAATAATGGGAAAAAGCTC AATAGGAAGTAAAGGGGTGGATGTATTAGGAGGAGTTATAGATGAAGGATA-TAGAGGAG AATTAGGAGTGATTATGATTAATTTAACAAAAAAATCAATAACTATATTAGAAAAGCAAA AAATAGCACAATTGATAATATTGCCTTGTAGACACGAAGGCCTACAACAAG---GAGAAA TACAAATGAATTCAGAAAGAGGAGAAAAAGGATTCGGATCAGCAGGAGTTTTTTC----- -----------ATCATGGGTAGATAGAATTGAAGAAGCAGAG-TTGAATCATGA-AAAAT TTCATTCAGACCCACAATATTTAAGGACGGAGTTCAATCTACCTAGAATAGTAGCAGAAG AAATAAAAAGAAAATGTCCCCTGTGCAGAATTA------------GAGGCGAA------C AAGTAGGGGGACAATTAAAGATTCGGCCT------------GGAATATGGCAAATGGATT GCACACATTTTAATGGT------------AAAATAATCATTGTAGCAGTGCATGTGGAAT CAGGATTTTTATGGGCACAGATAATTCCACAGGAGACTGCAGATTGT---ACAGTCAAAG CTCTTTTACAACTTATATGTG---CTCATAATGTTACAGAATTACAAACAGATAATGGAC CAAATTTTAAAAATCAGAAAATGGAAGGATTATTAAATTATATGGGAATAAAACATAAAT TGGGTATACCAGGTAACCCACAATCACAAGCATTGGTGGAAAATGCTAATAACACATTGA AAGTTTGGATTCAGAAATTTCTACCAGAGACTACTTCTCTGGATAATGCTTTGGCCCTA- --------------GCCCTGCATTGTCTCAATTTTAAACAAAGGGGTAGACTAGGGAGGA TGGCCCCTTATGAATTATACATACAACAAGAATCATTAAGAATACAAGACTATTTTTCCG CGA---TTC----CACAAAAGTTA--ATGATGCAATGGTTGTATTAC---------AAAG ATCAAAAAGATAA-----AAAATGGAAGGGACCAATGAGAGTGGAATATTGGGGACAAGG AT-CAGTATTATTAAAGGA---TGAAGAGAAGGGAATATTTCTTGTACCTAGGAGACACA TAAGAAGAGTCCCA------GAACCCTGCACTC------------------TTCCTGAAG GGGA-----------TGAGTGA-------------------------------------- ------------------------------------------------------- [11] FIVhya_Jaguarundi ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------------CCCTAATAAT CCTTGGAATACTCCAATCTTTTGTATAAAGAAGAAATCAAG---AAAATTTAGAATGTTG ATAGATTTTAGAGTGTTAAATAGTTTAACTGAAAAGGGAGCAGAGGTACAATTGGGAATC CCTCATCCTGCAGGATTAAAACAAAGAGAAAGAATCACAGTTTTAGATATTGGGGATGCT TATTTTACTATCCCATTAGATCCTGAATATCAACCCTATACAGCTTTTACATTACCAAAT GTTAATAATAAGGGTCCAGGAAGAAGATATGTATGGAAATCACTTCCTCAAGGATGGGTA TTAAGTCCTTTAATTTACCAAAGTACACTGGATAATATTTTAAGACCTTACAGAGAAAAA TATCCA---GATTTAGATATTTATCAATATATGGATGATATTTACATAGGATCAGACCTT AGTAAGCAAGAACATAAGAAAAGGGTACAAGAATTGCAAGAATGGT-------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------- [12] FIVlpa_Ocelot ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------------TCCAAACAAT CCTTGGAATACCCCAGTTTTTGCAATTAAGAAAAAATCAGG---TAAATGGAGAATGTTA ATAGATTTTAGGGATTTAAATGCAAAAACTCAAAAAGGAGCAGAAGTCCAACTGGGTATA CCTCATCCGGCTGGGTTGCAACAGAAAGAGCAAGTAACAGTATTAGATATAGGAGATGCT TATTTTACAATACCTTTAGATCCTGAGTATCAGCCATATACAGCATTTACATTACCTGCT CTAAATAATCAGGGTCCAGGAAAAAGATATGTATGGTGTTCTCTACCTCAGGGTTGGGTT TTAAGCCCTTTAATTTATCAAAGCACCCTTGATAATATTTTACAACCCTATAGGGACAAG TATAAGAATGAATTAGAAATTTATCAGTATATGGATGATATTTATATAGGAAGTGATTTA GATAAGAAAACTCATAAAGACAGAGTACAAGAATTGAGAGAATTAC-------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------- [13] FIVpco_Puma ------------------------------------------------------------ -----------------------------------------------------------T ACAGATTGTTTTCA---------AATGCTCTCGGGAAACGG-------------GAAACA GGGGGGA----------CCTGCGACCCCC-CAGAGAAATCAAATGCAGGTGCA------- --------------------------------------------------------GCAA TCTGTGCTGCCAACCGCACCTCCCTTGGAGG----------------------------- ------------------------------------------------------------ -----AGACTCCTCTCCTCCAATTATAAAAG----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --CAATATGG--AAAATGGACACACGACCCCGTGTCGAGGCCTGGATAAATGGGAAAAAG ATTAATTTTTTGTTAGATTCAGGGGCTGATATTTCAGTAATAAATTTGAAAGATTGGAAT CAAGG-------TCAAGCTATTAAAGAAGGGCCTCAACATATGACAGGGGTAGGAAGAGT ACAAAATGGA-ATAAGGTACTCTAATGTACATATTGAAAT---------------T---C ATACAGAAAATGAAGGAAAATGTTGTAAT---GGCTATATGTGTGTCCTTCCACAAAATA ATTTAGTAGACAATTTATTAAGCAGAGACAATTTACAGAAACTAGGTATAAGAATGGT-- ----AATGGCAATGATTTCTGATA---AAATACCTGTAGTTAAAGCAAAGATGAAAGATC CAAATAATGGACCAAGGGTCAAACAAT-GGCCATTATCAAAAGAAAAAATAGAAGCTTTA ACAGAAATAGTAGAAAGATTAGAAAAAGAAGGGAAAGTAGGAAGGGCAGACCCTAATAAC CCTTGGAATACTCCTATATTTTGTATAAAGAAGAAATCAGG---GAAATGGAGAATGCTA ATTGATTTTAGAGAACTTAATGCAAAAACAGAAAAAGGAGCAGAAGTCCAATTAGGATTA CCTCACCCATCTGGATTACAGAAGAGAAAGAATGTAACAGTTCTAGATATAGGAGATGCT TATTTTACCATCCCTTTAGATCCTGATTATCAGCCATATACAGCATTTACTTTACCATCT AAGAATAATCAAAGTCCAGGAAGAAGGTATATTTGGAAATCTCTTCCACAGGGGTGGATC TTGAGTCCCTTAATATACCAGAGCACTTTAGATAATATTCTACAGCCATTTAGAAAGAGA TATGAAAAACAGATAGATATATACCAATATATGGATGATATTTATATAGGATCAGATAAA GAAATAAAACAACACAGAAAAATTGTTCAAGAACTACGAGAGTTACTTTTATGGTGGGGA TTCGAAACACCAGAAGATAAATTACAAGA---------AGACCCACCATATAAATGGATG GGATATGAATTACACCCACAAGGGTGGAAAATTCAAACAACTAAGCTA------GAAATC CC------TGATAATCCAACATTAAATGAATTACAAAAATTGATAGGAACAATTAATTGG GCAACTCAAATAATCGGGGGATTGCCTAT---------AAAAAATTTGACTGAAATGATG AAGGGGAATCCAGACTTGAACTCAAGAAGGGAATGGACAATTGAGGCCAGACAAGAAGCA GAAAAGGCAAAAGAGGAAATAGAGAACATACCTAATGGGAATTATTATGATGACAAGAAA GAATTATATGCTATTTTAAGCATCAATGGTCCATTACAAATAAGTTACATGGTATATCAA TTAGAGGGAATTAAGAAACTTC------CTCTATGGTATGGAAGAATGAATAGAATTAAA AGGAAGATAGAAAATACATGTGATGTAGCATTAAGAACTATAAACAAAATTAAAGAAGAA TCTATAATAAGATTAGGAAAGGAGCC-----------------AATATATCAGATACCTT --------------GTTCAAAGGAAAATTGGGAAAGTTATATTCAAACCAGTAGGTACTT AA---AGAGTACCCCTCCAAAGGTAGAGTTTGTAAATAGCAGTTTAATGATA-----GAA AGACATTTGGCATGTTTAGT------------------AGATGACCCTATTCCAGATGAA GATGCAGAGACATGGTACATAGATGGAGGA---AGAAAGAAAGGAAAAAAGGCTAGAGCT GGTCGGTGGAAAAATAGTAAAGAATGGCAAATTATGGAAATAGAA---GGATCTAATCAG GTGGCAGAAGCACAAGCTTTGAATATGGCTTTAAAAG---CAGGACCAGAAAAGATGAAT ATTATAACGGACAGTCAATATGT------------------ATATAATATGATAAGAGCT AGGCCTGAA----------CCTAGTAGTCCATTATGGAAAGAAATTATAGAAGAATTGCA AAAGAAAGAAAAGATATTTTTGGATTGGGTACCTGGACATAAGGGA---ATTCCAGGAAA CAAAGAAATAGATGAATTAGT------------------TCAATGTAA------------ TATGATTATAGAAGGAGATGGAATATTGCAAAAAAGGGAAGAAGAT------GCAGGGTA TGACTTGTTAGCTTTAG---AAAAAATATATCTGCTTCCTTCTGAAACAAGGAAGATATC TGTTAATTGTAAAATACAATTGCCTTTAAGAACTGTAGGCCTTATCATGGGAAAAAGTTC TATAGGATTAAAAGGACTAGATGTTCTTGGAGGAGTAATAGATTCAGGATA-CAGAGGAG AAATATCAGTTATTATGGTAAATACCTCTAAAAAAGGGCAATGGATAGAACAAGGACAAA AAATAGCTCAGCTACTTATCATGCCAGTACAACATGAAACCCTGGAACAAG---GGAAGG TACAATTGAATTCAGAAAGAGGAACACAAGGATTTGGTAGCACAGGAGCATTTGCATTG- ---------CAATCCTGGATGGATTATATAGAACAAGCAGAA-ATCGAGCATGA-CAAAT TTCATACAGATGAAAAGACATTGCAAGAAAAATTTGGATTACCTAGAGTAGTAGCTAATG AGATTTTACAAAAGTGTACAGTCTGTAGAATGACAGGAACAG---GAGGTGGA------A ACAAGGGTGGAAAGTTAAAAATGGGACCT------------GGAGTATGGCAAATAGATT GTACTCATTTAGAAGGA------------CAAATAATATTAGTAGCTATTAATGTAGAAT CTGGACTGTTATGGACGAAGCTACTAAAACAAGAAACAGCTAAAGAA---ACAGTGATGG CTTTACTAGATTTAATACAGA---CACATAATGTTGTAGAGATACAAACAGATAATGGAC CCAATTTTGTAAATTCAAGGATGGAAGGACTCACTAATTTTTTGGGGATTCAACACAAAT ATGGAATCCCATTAAATCCACAAAGTCAAGCATTAGTGGAGAACATAAATAGTACTTTAA AAAGTTGGATAAAGAAGTTTAGAACAGAAGTAGAAACCTTGCAGGCAGCTGTAGCATTA- --------------GCTACCTTTGCTCTAAATAAAAAAAGAAAGGGTAATATAGGGGGTA TGTCTCCCTATGAATTACATATATGGCAGGAGAATACATTAATACAACAATACTACTCAA ATA---TCATATTTAAAAAATTTGGCAAAGAACAATGGATCTATTAT---------AAAG ACATAAAAGATAA-----AGCATGGAAAGGCCCGGTGGAAGTCCTCTATTGGGGGGAAGG AT-CGGTTTTGATTAAGAC---TCCTGAAAAAGGACTTTTCTTAGTTCCTAATAGGAGGA TTCGAAGAGTTCC---------------TCCCC------------------CTCAAGAAT TAGA-----------GGTAAGTAATGCAACCATACAGAGTACAGAG-------------- ----------------------------------TAG------------------ [14] FIVccr_Spotted_Hyena ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---CATCCGGCAGGCCTCAAACAAAGAAAACAAGTTACAGTCTTAGACATAGCAGATGCA TACTTCACTATTCCACTAGATCCAGACTTTCAGCCTTATACAGCCTTTACTCTACCAACA ATAAACAATCAAGGACCAGGAACCAGATATATCTGGTGCTCACTTCCACAAGGATGGGCC TTAAGCCCCTTGATTTATCAGAGCACATTAAGAGACATTCTGCAACCCTTTAGACAAAAA TATCCA---GAGATAGACCTCTATCAATACATGGATGACATCTACATAGGATCAGACCTG CCAAAGACAGACCACAAGGCAATAGTTAAAGAGCTTAGAGAAATTC-------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------- [15] RELIK_European_Rabbit ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------------CGGGAAAGC GGGGGGC----------AATGCCCCCCGGACCATGATGGCGTCTGCCCAGAAT------- --------------------------------------------------ATCCAG-TCA TCTATCCCACCATCTGCCCCACCCCTGGGGG----------------------------- ----------------------------------------------------------AA ACACAGACGGAAGCCCCTGCGACAGGGATCT---------------ACCCGAAAC----- ------------------------------------------------------------ --------------------------------------------TACCAAA--------- ---------ATAGAATTAAAACAAAGACCTACCTTAAAGGTAAACCTAGGGGGGAAAGAT ATAATAGGGCTGTTAGACACAGGGGCTGATTTAACTATAATAAGGGAACAAGAGGCTAAA GGAATAAA----AGAAGGGATAACAGAAGGATGGCAAAATATAGAGGGGGTGGGAGGGTG CTCTAAATTACAAAAAATATCACAGGTTACACTGAAAGAC-------------AAAAAAG GAAGGAAGACAAAGACATCCATTCTAATATCCCCAGATATTC------------------ ------CCATCAATATATTTGGAAGGGATATCTTAACAAAGTTAGGGGTAGCCCTAAT-- ----TATGGCACAACTCTCTACCC---AAATTACCCCAATAAAGATAAAAATGAAAGATC CTAATAAAGGTCCCTTGATTCCCCAAT-GGCCTTTAACCAAAGAAAAATTAGAAGGAATT AAGGAAATAACAAAAAGACTACTAGAGGAAGGGAAGATATCTCCAGCAGACCCAGATAAT CCCTGGAACACCCCAATATTTGTGATAAGGAAAAAATCAGG---TAAATGGCGAATGTTA ATAGATTTTAGAGAACTTAATAAATTAGTAGATAAGGGAAGAGAAGTTCAGTTAGGTATT CCACACCCTGGAGGATTACAAAGAAGAAACCAGGTTACTGTTTTGGATATAGGGGATGCT TATTTTACCATCCCTCTGGATAAGGACTTCAGGCAGTACACTGCCTTTACCATCCCAGAG GTTAATAATCAAGGTCCAGGCCATAGGTATGTTTGGAATTGCCTCCCACAAGGTTTTGTA TTAAGTCCCTTGATTTACCAAAGTACACTAAGGGACATACTAGAGCCCTGGAGACAACAA CACCCA---GAAGTAGATCTTTATCAATATATGGATGATATATATATTGGGTCCGATCAT TCTCCAAAACAACACAAACTGATCATAGAAAAACTCAGAAAAATGCTTTTAGAAAAGGGA TTCGAGACCCCAAATGAGAAATTACAAGA---------ACAATATCCCTATTCATGGATG GGGTACTTGTTGCACCCAAATAAATGGACATTGCAAAAACTAGAGTTG------CCAGAA CTTCC---AGAGAAGCCCACCCTAAACGAACTACAAAAGTTAGTAGGACTCCTTAATTGG ATGACCCAAGCTGTTCCTGGAATTAAGAC---------AAAACCTTTTACTCTTATGATG AAGGGAAACCAAGAGTTAAATAGTATCAGGGAATGGACCCCCGAAGCAAGACAGGAGTTA CGGACTATAAGGAGGCTATTACAAGAACACAAACCTTTAAGCTACTGGGACCCCAGCAAG GAAGTTTACTGTACAGT---TATGATGGGAGGTAACACCATAAATTATAAAGTGCACCAA GGATCTG------------ATA------TCCTTTGGGTAGGTAGACAGGAATTTCCAAAG GTATTAGCAGCATCTCCTCTAACTAGAGCCCTAAAATGTCTACATAAAATCAGACAAGAA TGTATTATACGAATAGGGCAAGAACC-----------------TATATATAGGTTACCTA --------------TAAAAAAAGAGGATTTAGATGTTATGATTCAGGAAGACCCCTACTT GC------ATTGGGTACCACAGATTGAATGTATCCATGTGCCTTTAATGCTT-----AGA AGAGCACTAAGCAGTCTTCA------------------AGGTCATCCCGTGCC------- --AGGACCTACTTACTATGTTGATGGAGGA------AGCAAACAGGGGCAAGGAAAATAT GGCTTTTGGAGATCAGATGGAGTTAAACTAGTTAAGGAGAGTGAG---GGAAGTAATCAA GAATTAGAAAAAAGAGCCATGCTACTAGCCCTTCAAG---AAGGACCCCCGATAATGAAT ATAGTTACGGATTCCCAATATGT------------------ATATACATTAATTGAGGCC AGACCCCTACCTGTA-AATATTGAAGAACCCTTGCTTAGAACCATACTAGAAGCTATAGA AAGTAAAGAAGAAATTTACATCCAATGGGTGCCTGGACATAAGGGA---ATCCCAGGCAA TGAAAATATTGACAAATTAGTTTCACAAATAAATACAACTCAAATAAA------------ CCTGGTAGTACAAGGTGGTCACATTAAGGAAAAAGAACCAGAACAG------ATTGGATA CTCCATAAGTGCCCCAA---AAGATCTGGTACTTATGCCAAAGGTAATAGAGACCCTTAA CCTACAAACACAAATTACCATAATCCCAGGACAGTGGGGGTGGATAACAGAAACATCAGA GATGACTGAGGCCAAAGTAAGGGTAGTTGGAGGTTTCATCAGCCCAGGAGA-TCAAAATC CTTTAAAGATAAGATTGGTCAACCTATCCCAAAAAATAGTATATGTAAAAACAGGACAAC TAATAGCTCAGTTAATTTTAATGCCTGTCCTCCATGACAT-------------------- -------------------------------AAGTAAGGCACCAAACAT----------- -----------CTTTTTTCTAGAACATATTGAGACAGCCACG-GATGATCATGC-TAAAT GGCATAGTGATGTGTCATACTTGAGACAACAATTCAGCTTACCAAAAATTGTAGCAGAAC AAATAATAAAGAACTGCCCCAAGTGTGTGCATA------------AAGGAGGA------A CTACTCCTCATATTAGTAGATCAGGGCCA------------GGACTGTGGCAAATGGATG TGACCCACTATGAGGCC------------CGGCTAATTCTGGTAGCCATTGAGACATCTA CTGGCCTTCTATGGGCTAAGCTAATTCCTAAGGAAACTGCTCAGGAA---ACAGTATGGG GAATATTAGAACTACAGAACC---TATTTCATATCCAAGCACTCCATACAGATAATGGCC CTAACTTCACAGCAGAAAGGGTCACGGGACTGTGCCAATATTTAAATATTGATCATACCA CAGGCACACCCTATAATCCACAGTCGCAGGGAATGGTTGAGAGAGCTAATCAATCCTTAA AACAAGAAATGGATAAATTTGCTGATGTAGTTCAAACCATTGAAGCACGGCTACAATTG- --------------GCTCTTATCGCCCTTAATCAAAAGAAAAGGGGAGGAATAGGGGGCT ATACTCCTACTGAAAGATATATCCATCAGAGATGGCAAGAACTAGAGCAAACGCTCCAAC ------TCCAGAAATTTAAAGAC---AAAAAACTCTTTTGCTTTTAT---------AGAT TACCAAACAGTAA-----AGACTGGAAAGGGCCCACTACCATCCTTTGGAAAGGAGAAGG AG-CAGTAGTGATCGACAC---ACCTGAAAAGGGGATTATTAGCTTGCCCCAAAGACATG TTAGGATGGTTCCA------GCCCCAGGACCTCA--------------GGATTTGGGAAT TTCC-------------------------------------------------------- -------------------------------AATTAG------------------ [16] ELVmpf_Ferret ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------C--------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------TCTTGGGAAGAGATATTTTAAAGAAACTAGGGATAAAATTAAT-- ----ATGTGCTAATTTATCAGATA---AGATTAGGCCCTACAAGGTACAACTTAGAGACC CTACTAAGGGACCCCAAATAAAACAAT-GGCCCCTTAGCAGGGATAAATTAGAGGGAATT ACAGAAATCATAGAGAAGTTATTAAAGGATGGGAAAATAGAAGAAGCAGCATGGGATAAC CCTTGGAATACACCCATATTTTGCATAAGGAAGAAGTCAGG---AAAATACAGGGTTTTA ATAGATTTCAGGGAACTTAATAAAATGACTTTAAGAGGGGAAGAGATACAACTGGGAATT CCCTTCCCTGCAGGGTTACCAGAAAAAAGGTATATAACAGTTCTAGATATAGCAGATGCT TACTTTACTATCCCATTGGATCCTGATTTTAGGCCTTACATGGCATTTACCCTACCCTCC TTGAACAATCAAGGACCAGCCAGAAGGTTCCAATGGTGCTGTCTCCCACAAGGCTGGAGT CACAGCCCTGCTATATATCAAGGCACCCTTAGAGATATTCTCTTGCCCTGGAGAGAACAA TATCCT---GAGATATTATTATACCAGTACATGGATGATTTACTAATAGGATCATATTTA AGCAAAAAGGAGCACCAGAAGGTAGTGCAAAATCTTAGAGACATGCTATTTCAATGGGGG TTTGAGACCCCAGAGGAGAAACTACAGGA---------AGCTCCCCCATATAATTGGATG GGATATGAATTAGAACCTAAAACCTGGAAATTACAAAAATGGGAACTG------GAAATC CC------AGAAAAACCAACTTTAAACCAACTGCAGAAGATATTAGGGAAGATCAATTGG GCTAGCTCCATGATCCCAGGTTTAAGGAT---------CAAAAACTTATGTAAGTTAATG AGAGGCAATATGCAATTAGACTCCCATAGGGAATGGACAACAGAGGCTTTAGAGGAAGTA AAATATGCCCAACAAAAGATAGCAGAAAATCAAGGAAATCATTACTATATACCAGAAAGG GAGGTTTATTGCAAAAT---TATAAAAAATTCTCAGGAAATAAATTATGGAATATATCAG GAAGAGCAAGGGAAAAAGCAGA------TGCTATGGGTTGGAAGACAATCATTAAAGAGG GATATTGGAAAATCTATCCTAGATAAATTGGCCATAGCTATTCAGAATATTTGCACAGAA TGCAAAATCAGGTTAGGGGTAGAACC-----------------CATTATTCTACTCCCCA --------------TGGAAAAAAGGACCTTAGAAAATTGGTACAGCCAACAAAATTATCT TC------GCTGGTTTCCCCATGTCAAACTAATAAATGCTGATTTAATGTTT-----AAG GAAGTCCTAGCAAACCAGAG------------------TAATGATCCTTTAGA------G GATGTGGAAGTCTTCTATACAGATGGAGGG------AGAAAGGAACAACAAACAAAGGCA GGGTATGTTACTTCCACAGGAAAAAGTAGAATAGAACATATAGTA---GGATCAAATCAG CAAGCAGAAAAATATGCAATAAAAATGGCCTTTCAAG---ATTCAGGTCCACAAGTTAAT ATCATCACAGATAGCAAGTACTG------------------CTTCTCCATTTTAAGAGCT AGACCAGACCCAGAA-ACCATTGAAGATAATTTATGGAAGGAGATAATTTCATTAGCTAT GAAAAAGGACATTTGGTATATAGGATGGGTACCAGGACATAAGGGG---GTACCTGGAAA CACAGAAGCAGACCAATTAGTATC------------------------------------ TATTGTTGTGGAGGGAGAGAATGTTAAGGACAAAAGACCAGAAGAT------GTAGGCTA TGATCTATGTACCCCAA---AAGATTTATTTCTATTACCTAGAGAAATTATAAAACTAGA CATAGAAACAAAAATAGAGATCCCAGAAGGACACTGGGGTCGGATAACCCAAAAATCATC CCTAGGCTTAAAAGGCCTACAAATCCAGGGAAAAACTATAGATCAAGGGTT-TAGAGGTA ATATTCAAGTTCTGTTATTAAATGGAGGAAGGAGGAAAATTTTATTACAATCAGGACAAA AAATAGCACAATTAATCATCTTACCCTTATTTCATGAGCCTCTTAAACAAG---GCACAG TAGATAAATATACAGAAAGGGGGCAAAATGGGTTTGGCAGCACAGGTGTCTTTTT----- -----------CAACTGGGTAGACAACCTGAGTCAAATAAAG-GAAGAACATGA-AAAAT GGCATAATAATTGGAGGGATTTAAAATTGAAATATGGTCTCCCTACCACAGTGGCAAAAG AAATAATTAAACAATGTCCAAACTGCATTAAAG------------GGGCAAAC------C CAATAAGAGGCATCAACCCCGTAGACTCC------------CAACTGTGGCAG------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------T--------------------------------------------------- ------------------------------------------------------- [17] Equine_infectious_anaemia_virus ------------------------------------------------------------ ------------------------------------------------------------ -----------------ATGCAGAAGTGTTCCAAAAAACGG-------------GAAGCA AGGGGCT--------CAAGGGAGGCCCC-----AGAAACAAACTTTCCCGATACAACAG- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------AAGAGT CAGCACAACAAATCTGTTGTACAAGAGACTC-------CT----CAGACTCAAAATCTGT ACCCAGATCTGAGCGAAATAAAAAAGGAATACAATGTCAAG------------------- -----------------GAGAAGGATCAAGTAGAGGATCTCAAC--CTGGACAGTTTGTG GGAGTAACATATAATCTAGAGAAAAGGCCTACTACAATAGTATTAATTAATGATACTCCC TTAAATGTACTGTTAGACACAGGAGCAGATACTTCAGTGTTGACTACTGCACATTATAAT AGGTTAAAATATAGA-GGGAGAAAATATCAAGGGACGGGAATAATAGGAGTGGGAGGA-- -AATGTGGAA-ACATTTTCTACGCCTGTGACTATAAAGAA---------------AAAGG GTAGACACATTAAGACAAGAATGCTAGTG---GCAGATATTC------------------ ------CAGTGACTATTTTGGGACGAGATATTCTTCAGGACTTAGGTGCAAAATTGGT-- ----TTTGGCACAGCTCTCCAAGG---AAATAAAATTTAGAAAAATAGAGTTAAAAGAGG GCACAATGGGGCCAAAAATTCCTCAAT-GGCCACTCACTAAGGAGAAACTAGAAGGGGCC AAAGAGATAGTCCAAAGACTATTGTCAGAGGGAAAAATATCAGAAGCTAGTGACAATAAT CCTTATAATTCACCCATATTTGTAATAAAAAAGAGGTCTGG---CAAATGGAGGTTATTA CAAGATCTGAGAGAATTAAACAAAACAGTACAAGTAGGAACGGAAATATCCAGAGGATTG CCTCACCCGGGAGGATTAATTAAATGTAAACACATGACTGTATTAGATATTGGAGATGCA TATTTCACTATACCCTTAGATCCAGAGTTTAGACCATATACAGCTTTCACTATTCCCTCC ATTAATCATCAAGAACCAGATAAAAGATATGTGTGGAAATGTTTACCACAAGGATTCGTG TTGAGCCCATATATATATCAGAAAACATTACAGGAAATTTTACAACCTTTTAGGGAAAGA TATCCT---GAAGTACAATTGTATCAATATATGGATGATTTGTTCATGGGAAGTAATGGT TCTAAAAAACAACACAAAGAGTTAATCATAGAATTAAGGGCGATCTTACTGGAAAAGGGT TTTGAGACACCAGATGATAAATTACAAGA---------AGTGCCACCTTATAGCTGGCTA GGTTATCAACTTTGTCCTGAAAATTGGAAAGTACAAAAAATGCAATTA------GACATG GT------AAAGAATCCAACCCTTAATGATGTGCAAAAATTAATGGGGAATATAACATGG ATGAGCTCAGGGATCCCAGGGTTGACAGT---------AAAACACATTGCAGCTACTACT AAGGGATGTTTAGAGTTGAATCAAAAAGTAATTTGGACGGAAGAGGCACAAAAAGAGTTA GAAGAAAATAATGAGAAGATTAAAAATGCTCAAGGGTTACAATATTATAATCCAGAAGAA GAAATGTTATGTGAGGTTGAAATTACAAAAAATTATGAGGCAACTTATGTTATAAAACAA TCACAAG------------GAA------TCCTATGGGCAGGTAAAAAGATTATGAAGGCT AATAAGGGATGGTCAACAGTAAAAAATTTAATGTTATTGTTGCAACATGTGGCAACAGAA AGTATTACTAGAGTAGGAAAATGTCC-----------------AACGTTTAAGGTACCAT --------------TTACCAAAGAGCAAGTAATGTGGGAAATGCAAAAAGGATGGTATTA TT------CTTGGCTCCCAGAAATAGTATATACACATCAAGTAGTTCATGA--------T GATTGGAGAATGAAATTGGT------------------AGAAGAACCTACATC------A GGAATAACAATA---TACACTGATGGGGGA------AAACAAAATGGAGAAGGAATAGCA GCTTATGTGACCAGTAATGGGAGAACTAAACAGAAAAGGTTAGGACCTGTCACTCATCAA GTTGCTGAAAGAATGGCAATACAAATGGCATTAGAGGATACCAGAGATAAACAAGTAAAT ATAGTAACTGATAGTTATTATTG------------------TTGGAAAAATATTACAGAA GGATTAGGTTTA----GAAGGACCACAAAGTCCTTGGTGGCCTATAATACAAAATATACG AGAAAAAGAGATAGTTTATTTTGCTTGGGTACCTGGTCACAAAGGG---ATATATGGTAA TCAATTGGCAGATGAAGCCGC--------A----A------AAATAAAAGAAGAAATCAT GCTAGCATACCAAGGCACACAAATTAAAGAGAAAAGAGATGAAGAT------GCAGGGTT TGACTTATGTGTTCCTT---ATGACATCATGATACCTGTATCTGACACAAAAATCATACC CACAGATGTAAAAATTCAAGTTCCTCCTAATAGCTTTGGATGGGTCACTGGGAAATCATC AATGGCAAAACAGGGGTTATTAATTAATGGAGGAATAATTGATGAAGGATA-TACAGGAG AAATACAAGTGATATGTACTAATATTGGAAAAAGTAATATTAAATTAATAGAGGGACAAA AATTTGCACAATTAATTATACTACAGCATCACTCAAATTCCAGACAGCCTT---GGGATG AAAATAAAATATCTCAGAGAGGGGATAAAGGATTTGGAAGTACAGGAGT----------- -----------ATTCTGGGTAGAAAATATTCAGGAAGCACAA-GATGAACATGA-GAATT GGCATACATCACCAAAGATATTGGCAAGAAATTATAAGATACCATTGACTGTAGCAAAAC AGATAACTCAAGAATGTCCTCATTGCACTAAGC------------AAGGATCA------G GACCTGCAGGTTGTGTCATGAGATCTCCT------------AATCATTGGCAGGCAGATT GCACACATTTGGACAAT------------AAGATAATATTGACTTTTGTAGAGTCAAATT CAGGATACATACATGCTACATTATTGTCAAAAGAAAATGCATTATGT---ACTTCATTGG CTATTTTAGAATGGGCAAGAT---TGTTTTCACCAAAGTCCTTACACACAGATAACGGCA CTAATTTTGTGGCAGAACCAGTTGTAAATTTGTTGAAGTTCCTAAAGATAGCACATACCA CAGGAATACCATATCATCCAGAAAGTCAGGGTATTGTAGAAAGGGCAAATAGGACCTTGA AAGAGAAGATTCAAAGTCATAGAGACAACACTCAAACACTGGAGGCAGCTTTACAACTT- --------------GCTCTCATTACTTGTAAC---AAAGGGAGGGAAAGTATGGGAGGAC AGACACCATGGGAAGTATTTATCACTAATCAAGCACAAGTAATACATGAGAAACTTTTAC TAC---AGCAAGCACAATCCTCC---AAAAAATTTTG---TTTTTAC---------AAAA TCCCTGGTGAACA-----TGATTGGAAGGGACCTACTAGGGTGCTGTGGAAGGGTGATGG TG-CAGTAGTAGTTAATGA---TGAAGGAAAGGGAATAATTGCTGTACCATTAACCAGGA CTAAGTTACTAATA-----------------------------------------AAACC AAAT-------------------------------------------------------- ----------------------------------TGA------------------ [18] HIV_1_Group_M ------------------------------------------------------------ ------------------------------------------------------------ --------------------------TTTTTTAGGGAAAATTTGGC--------CTTCCA GCAA-------------AGGGAGGCC----------AGGAAATTTTCCTC---------- -----------------------------------------AGAGCAGA----------- ---CCAGAGCCGACAGCCCCACCAG----------------------------------- ------------------------------------------------------------ ----CAGAGATCTTTGGGATGGGGGAAGAGATAAC------CTCCCCTCCGAAAC----- ---------------------------AGGAGCAGAGAGAC------------------- -----------------AAGGAACAGGCCCCACCCTCAGTTTCC--CTCAA--------- ---------ATCACTCTTTGGCAACGACCAGTAGTCAAAGTAAAAATAGAAGGACAGCTA AAAGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAG------AAGACATAAAT TT----------G---CCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTT CATCAAAGTA-AGACAGTATGATCAGATACTTATAGAAAT---------------TTGTG GAAAAAAGGCTATAGGTACAGTATTAGTA---GGGCCTACAC------------------ ------CTGTCAACATAATTGGAAGAAATATGTTGACCCAGATTGGTTGTACTTTAAA-- ----TTTCCCAA------TTAGTC---ATGTTGAGACTGTACCAGTAAAATTAAAGCCAG GAATGGATGGTCCAAAGGTTAAACAAT-GGCCATTGACAGAAGAAAAAATAAAAGCATTA ACAGAAATTTGTACAGAGATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAAT CCATACAATACTCCAATATTTGCTATAAAGAAAAAAGACAGCACTAAATGGAGGAAATTA GTAGATTTCAGGGAGCTCAATAAAAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATA CCACATCCAGCGGGCCTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTGGGGGACGCA TATTTTTCAGTTCCTTTAGATGAAAACTTTAGAAAGTATACTGCGTTCACCATACCTAGT ACAAACAATGAGACACCAGGAATCAGGTATCAGTACAATGTGCTTCCGCAGGGATGGAAA GGATCACCGGCAATATTCCAGAGTAGCATGACAAAAATCTTAGAGCCCTTTAGGTCAAAA AATCCA---GAAATAATTATCTATCAATACATGGATGACCTGTATGTAGGATCTGATTTA GAAATAGGGCAGCATAGAACAAAAATAGAAGAGTTAAGAGCTCATCTGTTGAGCTGGGGA TTAACTACCCCAGACAAAAAGCATCAGAA---------AGAACCGCCATTTCTTTGGATG GGATATGAACTTCATCCTGACAAGTGGACAGTCCAGCCTATAATACTG------CCAGAA AA------AGAAAGCTGGACTGTCAATGATATACAGAAATTAGTGGGAAAACTAAATTGG GCAAGTCAAATTTACCCAGGGATTAAAGT---------AAAGCAATTGTGTAAGCTCCTC AGGGGAGCCAAAGCACTAACAGATATAGTAACACTGACTGAGGAAGCAGAATTAGAATTG GCAGAAAACAGGGAGATTCTAAAAGAACCTGTGCATGGGGTATACTATGACCCATCAAAA GACTTAATAGCAGAAATACAGAAACAAGGGCAAGACCAATGGACATATCAAATTTATCAA GAGCCATT---------TAAAA------ATTTAAAAACAGGAAAATATGCAAGAAAAAGG TCTGCTCACACTAATGATGTAAAACAATTAACAGAAGTGGTGCAAAAAGTGGTCATGGAA AGCATAGTAATATGGGGAAAGACACC-----------------TAAATTTAAACTACCCA --------------TACAAAAAGAAACATGGGACACATGGTGGATGGACTATTGGCAGGC TA------CCTGGATTCCTGAATGGGAGTTTGTCAATACCCCTCCTCTAGT--------A AAATTATGGTACCAGTTAGA------------------GAAAGACCCCATAGC------A GGAGTAGAGACTTACTATGTAGATGGGGCAGCCAATAGGGAGACTAAGCTAGGGAAAGCA GGATATGTCACTGACAGAGGAAGACAAAAGGTTGTTTCCCTAACTGAGACAACAAATCAA AAGACTGAACTACATGCAATCCTTTTAGCTTTGCAGG---ATTCAGGATCAGAAGTAAAT ATAGTAACAGACTCACAGTATGC------------------ATTAGGAATCATTCAGGCA CAGCCAGAC-------AGGAGTGAATCAGAATTAGTAAATCAAATAATAGAGAAGCTAAT AGGAAAGGACAAAGTCTACCTGTCATGGGTACCAGCACACAAAGGA---ATTGGAGGGAA TGAACAAGTAGATAAATTAGT--------------------CAGTTCT------------ ------------------------------------------------------------ -------------------------------------------GGAATCAGGA------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------AGGT----------- -----------GCTGTTTTTAGATGGGATAGATAAAGCTCAA-GAAGAACATGA-AAGAT ATCACAGCAATTGGAGAACAATGGCTAGTGATTTTAATCTGCCACCTATAGTAGCAAAAG AAATAGTAGCCAGCTGTGATAAATGTCAACTAA------------AAGGGGAA------G CCATGCATGGACAAGTAGACTGTAGTCCA------------GGGATATGGCAATTAGATT GCACACATCTAGAAGGA------------AAAGTAATTCTGGTAGCAGTCCATGTAGCCA GTGGCTATATAGAAGCAGAAGTTATCCCAGCAGAAACAGGACAGGAG---GCAGCATACT TTCTGCTAAAATTAGCAGGAA---GATGGCCAGTAAAAGTAGTACACACAGACAATGGCA GCAATTTCACCAGCGCTGCATTTAAAGCAGCTTGTTGGTGGGCAAGTATCCAACAGGAAT ATGGGATCCCCTACAATCCCCAAAGTCAAGGAGTAGTGGAATCTATGAATAAGGAATTAA AGAAAATCATAGGACAGGTAAGAGAGCAAGCTGAACACCTTAAAACAGCAGTACAAATG- --------------GCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGT ACAGTGCAGGGGAGAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAATTAC AAA---AACAAATTACAAAAATT---CAAAATTTTCGGGTTTATTAC---------AGGG ACAGCAGAGATCC-----AATTTGGAAAGGACCAGCAAAACTACTCTGGAAAGGTGAAGG GG-CAGTAGTAATACAG------GACAATAGTGATATAAAAGTAGTACCAAGAAGAAAAG CAAAGATCATTAGG------GATTATG---------------------------GAAAAC AGAT-----------GGCAGGTGATGATTGTGTGGCAGGTAGACAGGATGAGGATTAG-- ------------------------------------------------------- [19] HIV1_Group_U ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------GCCTTTAGTTTCC--CTCAG--------- ---------ATCTCTCTTTGGCAACGACCCATTGTCACAGTAAACATAGGAGGACAGCTA ATAGAAGCCCTATTAGATACAGGGGCAGATGATACAGTATTAG------AAAATATAAAT TT----------G---CCAGGAAAATGGAGACCAAAAATGATAGGGGGAATTGGAGGTTT CATCAAAGTA-AGACAGTATGATCAAATATCCATGGAAAT---------------CTGTG GAAAAAGAGCTATAGGTACAGTATTAGTA---GGACCTACAC------------------ ------CTGTTAATATAATTGGAAGGAACATGTTGACACAGATTGGTTGTACTTTAAA-- ----TTTCCCAA------TTAGTC---ATATTGAAACTGTACCAGTAAAATTAAAGCCAG GAATGGATGGCCCAAGGGTTAAACAAT-GGCCATTGACAGAAGAGAAAATAAAGGCATTA ATAGAAATTTGTACAGACATGGAAAAAGAAGGAAAAATTTCAAGAATTGGGCCTGAAAAT CCATACAACACTCCAGTGTTTGCCATAAAGAAAAAAGACAGCACTAAATGGAGAAAATTA GTAGATTTCAGAGAACTCAATAAAAGAACTCAAGACTTTTGGGAAGTTCAGCTAGGAATA CCCCATCCAGCAGGTTTAAAAAAGAAGAAATCAGTAACAGTACTAGATGTGGGGGACGCA TATTTTTCAGTTCCCTTAGATGAAGATTTTAGAAAATATACTGCATTCACTATACCTAGT ATAAACAATGAGACACCAGGGATTAGATATCAGTACAACGTGCTACCACAGGGATGGAAA GGATCACCAGCAATATTTCAGTGTAGCATGACAAAAATTTTAGAACCCTTTAGAAAACAA AACCCA---GAACTAGTTATCTACCAATACATGGATGACTTGTATGTGGGATCTGACTTA GAGATAGGGCAACATAGAGTAAAAATAGAGGAATTGAGGGAACATCTATTGAAATGGGGA TTCACTACACCAGATAAAAAACATCAGAA---------GGAACCTCCATTTCTTTGGATG GGATATGAACTCCATCCTGACAAATGGACAGTACAGCCTGTAACACTG------CCAGAA AA------GGACAGCTGGACTGTCAATGATATACAAAAGTTAGTGGGAAAATTAAATTGG GCAAGTCAGATTTATCCAGGAATTAAGGT---------AAAGCAACTGTGTAGACTCCTT AGAGGAGCCAAGGCACTAACAGATATAGTGACATTAACTGAGGAAGCAGAACTAGAGTTG GCAGAAAACAGGGAGATTCTGAAAGAACCTGTACATGGGGTATACTATGACCCATCAAAA GACTTAATAGCAGAAATACAGAAACAAGGGAATGACCAGTGGACATATCAAATTTATCAA GAGCCATT---------TAAAA------ATCTGAAAACAGGGAAATATGCAAAAAGTAAG TCTACCCACACTAATGATGTAAAACAATTAACAGCTGCAGTGCAAAAGATAGCCATGGAA TGCATAGTGATATGGGGAAAGACTCC-----------------CAAATTTAGACTCCCCA --------------TACAAAAAGAAACATGGGATGCATGGTGGATGGAGTATTGGCAGGC GA------CCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCTCTAGT--------A AAATTATGGTACCAGTTGGA------------------AAAAGACCCCATAGT------A GGAGCAGAAACTTTCTATGTAGATGGAGCAGCTAATAGAGAGACTAAACTAGGAAAAGCA GGATATGTCACTGACAGAGGAAGACAAAAAATTGTTTCCTTAAATGGAACAACAAATCAA AAGACTGAGTTGCATGCAATCTATCTAGCCTTGCAAG---ATTCAGGATCAGAGGTAAAC ATAGTAACAGATTCACAGTATGC------------------AATAGGAATCATTCAGGCA CAACCAGAC-------AGGAGTGAATCAGAGATAGTCAATTGGATAATAGAAAAGCTAAT AGAAAAGGAAAAGATCTATCTGTCATGGGTACCAGCACACAAAGGA---ATTGGAGGAAA TGAACAAGTAGATAAATTAGT--------------------CAGTTCT------------ ------------------------------------------------------------ -------------------------------------------GGAATAAGAA------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------AGGT----------- -----------ACTGTTCCTAGATGGAATAGATAAGGCCCAA-GAAGAGCATGA-AAAAT ATCACAGCAATTGGAGAGCAATGGCTAATGATTTTAATCTACCACCTGTGGTAGCAAAAG AAATAGTAGCTAGCTGTGATAAATGTCAGTTAA------------AGGGGGAA------G CCATACATGGACAAGTAGACTGTAGCCCA------------GGGGTATGGCAACTAGACT GTACACATCTAGAAGGA------------AAGATTATCCTGGTAGCAGTCCATGTAGCCA GTGGCTATATAGAGGCAGAAGTTATCCCAGCAGAAACAGGACAGGAA---ACAGCATACT TTATATTAAAATTAGCAGGAA---GATGGCCAGTGAAAATACTACATACAGATAATGGCC CCAATTTCATCAGTGCAGCAGTTAAGGCGGCCTGTTGGTGGGCAAATATCAAACAAGAAT TTGGGATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAA AGAAAATCATAGGGCAAGTAAGAGAGCAAGCTGAACACCTTAAGACAGCAGTACAAATG- --------------GCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGAGGGT ACAGTGCAGGGGAAAGAATAGTAGACATGATAGCAACAGACTTACAAACTAAAATATTAC AAA---AACAAATTACAAAAATT---CAAAATTTTCGGGTTTATTAC---------AGAG ACAGCAGAGACCC-----AATTTGGAAAGGACCAGCAAAACTACTCTGGAAAGGTGAAGG AG-CAGTAGTAATACAA------GACAATAGTGACATAAAGGTGGTTCCAAGAAGAAAAG CAAAGATTATTAGG------GATTATG---------------------------GAAAAC AG---------------------------------------------------------- ------------------------------------------------------- [20] HIV_1_Group_N ------------------------------------------------------------ ------------------------------------------------------------ --------------------------TTTTTTAGGGAAGGGCTGGT--------CTCCCT TCAA-------------AGGGAGACC----------AGGGAACTTTCCCC---------- -----------------------------------------AGACAACA--------ACA AGGAAAGAGCCCACAGCCCCGCCAC----------------------------------- ------------------------------------------------------------ ----TAGAGAGTTATGGGTCTCAGGAGGAGAGGAG------CACACAGAGAAAGG----- ------------AGATGCAGGAGAACCAGGAGAAGACAGAG------------------- -----------------AACACTCTGTACCCACCCTTAACTTCC--CTCAG--------- ---------ATCACTCTTTGGCAACGACCTGTCATCTCAGTAAAAATAGGAAATGAAGTA AGAGAAGCTCTTTTAGACACAGGAGCTGATGATACAGTAATAG------AAGAAATACAA TT----------A---GAAGGGAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGATT TATCAAAGTA-AGACAATATGATAATATAACAATAGACAT---------------ACAAG GAAGGAAAGCAGTTGGTACAGTGTTAGTA---GGACCAACAC------------------ ------CTGTTAATATTATAGGAAGAAACTTTTTAACACAGATTGGCTGTACTCTAAA-- ----TTTTCCAT------TAAGTC---CTATTAAAACTGTACCAGTAAAATTAAAACCAG GAATGGATGGCCCAGAAGTAAAACAAT-GGCCTTTGACAGCAGAAAAAATAGAGGCGTTA AGAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCTAGAATAGGGCCTGAAAAT CCATATAACACTCCAATTTTTGCTATAAAAAAGAAAGATAGCACTAAATGGAGAAAATTA GTAGATTTCAGAGAATTAAATAAAAGGACCCAAGACTTTTGGGAAGTGCAGCTGGGAATC CCACATCCAGCAGGATTAAAGCAGAAAAAGTCAGTAACAGTCTTGGATGTAGGAGATGCT TATTTTTCATGTCCCTTAGATGAAGATTTTAGAAAGTATACAGTTTTTACCATACCTAGT GTAAACAATGAGACACCTGGTATTAGATACCAGTATAATGTGTTACCACAGGGATGGGAG GGATCACCAGCAATTTTTCAAAGTTCAATGACAACAATTCTAGAACCATTTAGAAAGAAG CATCCA---GAGATAATCATTTATCAGTACATGGATGACCTCTATGTGGGATCTGACTTA GAAATAGCAAAACATAGAGAGACAGTAGAAGAACTTAGAGGCCATCTGTTGAAGTGGGGC TTTACAACCCCTGACAAAAAACATCAAAA---------GGAGCCACCATTCCTCTGGATG GGATATGAGCTCCATCCAGATAAATGGACAGTCCGGCCAATAAAGTTA------CCAGAA AA------GGATACATGGACTGTCAATGATATACAGAAATTAGTAGGGAAATTAAATTGG GCAAGTCAGATTTATCCAGGAATTAAAGT---------AAGACAGCTTTGCAAATTAATC AGAGGAACCAAGGCTTTGACAGAAGTAGTTACCTTTACAGAAGAAGCAGGATTAGAACTA GCAGAAAACAGGGAGATATTAAAAGAACCCCTACATGGAGTCTATTATGACCCAGAAAAG GAATTAATAGCGGAAATTCAAAAACAAGGACAAAGTCAGTGGACATATCAGATTTATCAG GAGTCACA---------TAAAA------ATTTAAAGACAGGAAAGTATGCAAAAATGAGA TCTGCCCATACTAATGATATAAAGCAGTTAACTGAAGTAGTACAAAAGATAGCAACAGAA AGTATAGTAATTTGGGGAAAGACTCC-----------------TAAGTTTAAATTACCAG --------------TACAAAAGGAAGTGTGGGAGGCATGGTGGACTGAGAATTGGCAAGC AA------CTTGGATTCCTGAGTGGGAATTCGTCAACACCCCTCCCCCTGT--------A AAATTATGGTATCAGTTAGA------------------AACAGAGCCAATTAG------T GGGGCAGAAACATACTATGTAGATGGAGCAGCTAATAGAGAAACAAAATTGGGAAAAGCA GGTTTTGTGACAGATAGAGGAAGACAGAAAGTGGTCTCTATTAAAGATACCACCAATCAA AAAACTGAGTTACATGCTATCCTCATGGCCTTACAAG---AGTCAGGACAGGAAGTAAAC ATAGTCACTGACTCTCAGTATGC------------------TATGGGAATAATTCACTCA CAGCCAGAT-------AAAAGTGAATCAGAATTGGTGAGCCAAATAATAGAAGAACTCAT AAAAAAGGAAAGAGTCTATCTCTCTTGGGTACCTGCACATAAAGGT---ATTGGAGGAAA TGAGCAGGTAGACAAATTAGT--------------------TAGCTCA------------ ------------------------------------------------------------ -------------------------------------------GGAATTAGAA------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------AAGT----------- -----------ATTATTCCTAGATGGTATAGAAAAAGCCCAA-GAAGAGCATGA-AAGAT ATCACAGTAACTGGAGAGCAATGGCCAGTGATTTTAACTTRCCCCCCATAGTGGCAAAAG AAATAGTAGCCAGCTGTGACAAATGCCAGCTAA------------AAGGGGAA------G CCATGCATGGACAGGTCAATTGTAGTCCA------------GGAGTGTGGCAGTTAGATT GTACACACTTAGAAGGA------------AAAATCATTCTTGTAGCAGTCCATGTGGCCA GTGGCTACTTAGAAGCAGAAGTTATTCCTGCAGAAACAGGACAGGAA---ACAGCATATT TTATTTTAAAGTTAGCTGGAA---GATGGCCAGTAAAAGTTATACACACTGATAATGGAC CCAATTTCACTAGTGCCACTGTAAAAGCAGCCTGTTGGTGGGCAAGTATCAAACAGGAAT TCGGGATACCCTACAATCCTCAAAGTCAGGGAGCAGTAGAGTCCATGAATAAAGAATTAA AGAAAATTATAGGACAAATCAGAGATCAAGCAGAACATCTAAAAACAGCAGTGCAAATG- --------------GCAGTCTTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGT ACACTGCAGGGGAGAGAATAATAGACATAATAGCAACAGACATACAGACAACAAAATTAC AAA---CACAAATTTTAAAAGTT---CAAAATTTTCGGGTTTATTAC---------AGAG ACAGCAGAGATCC-----CATTTGGAAAGGACCAGCCAAACTTCTGTGGAAAGGAGAAGG GG-CAGTGGTAATCCAA------GATAACGGGGATATAAAAGTAGTCCCACGTAGGAAAG CAAAAATAATTAGA------GATTATG---------------------------GAAAAC AGAT-----------GGCAGGTGATGGTTGTGTGGCAAGTGGACAGGATGAAAATCAGGA TATGGAA---------------------------TAG------------------ [21] SIVcpz_Central_African_Chimpanzee ------------------------------------------------------------ ------------------------------------------------------------ --------------------------TTTTTTAGGGAAAGGTTGGT--------CTCCGT GGAGCGG----GGGATCAAAGAGACC----------AGGGAACTTCCTGC---------- -----------------------------------------AGGGCAGG----------- ---AAGGAACCCACAGCTCCGCCCC----------------------------------- ------------------------------------------------------------ ----TAGAGAGTTATGGGTATCAGGAAGCAA---------------CAGGAAAGA----- ------------GACAGGAGGAGGAGAGGGAGAAGGAAAAG------------------- -----------------GAACCCCTGTATCCTCCGTTAACCTCC--CTCAA--------- ---------ATCACTCTTTGGCAGCGACCCCTCCTCGGAGTAAAAATAGAAGGGCAGCTA ATAGAAGCTCTGCTAGATACAGGAGCTGATGATACAGTAATAG------ATAATGTACAA CT----------A---ACAGGAAAATGGAGACCAAAAATGATAGGGGGAATTGGAGGTTT TATCAAAGTT-AAACAATATGACAACATAGCAATAGAAAT---------------TGAGG GAAGAAAAACAACAGGCACGGTATTGGTG---GGACCAACAC------------------ ------CAGTGAATATAATTGGCAGAAATATATTGACACAAATTGGCTGTACTTTAAA-- ----TTTTCCTA------TAAGTC---CCATTGAAACAGTGCCAGTAAAATTAAAGCCAG GAATGGATGGCCCTAGAGTAAAACAAT-GGCCTTTAACAGCAGAAAAAATTAAAGCATTA ACAGAAATTTGTCAGGAAATGGAAAAAGAAGGAAAGATTTCAAGAATAGGGCCCGAAAAT CCATATAATACACCAATTTTTGCTATAAAAAAGAAAGATAGTACAAAATGGAGAAAACTG GTAGATTTCAGGGAATTAAATAAAAGAACACAGGACTTTTGGGAAGTCCAGTTAGGCATA CCACACCCGGCAGGTTTAAAAAAGAAAAAGTCAGTAACAGTGCTAGATGTGGGAGATGCT TATTTTTCCTGCCCATTAGATGAAAATTTTAGGAAATATACAGCATTTACTATACCCAGT GTAAATAATGAAACACCAGGAATTAGATATCAATATAATGTGTTACCACAAGGATGGAAA GGGTCACCAGCAATTTTTCAAAGCAGCATGATAAAAATTCTAACCCCATTCAGACAGCAG CATCCA---GACTTAATAATTTACCAGTATATGGATGATCTTTATGTGGGATCTGATTTG GAACTAAGAGAACATAGAGAAAAGGTAGAGCTACTCAGACAGCATCTACTTACTTGGGGG TTTACTACCCCTGATAAAAAGCATCAGAA---------GGAGCCACCTTTTTTGTGGATG GGCTATGAGCTCCATCCTGATAAGTGGACAGTGCAGCCAATACAGTTA------CCACAG AA------AGAGACCTGGACTGTCAATGATATTCAGAAACTAGTGGGAAAACTAAATTGG GCAAGTCAAATATATCCAGGAATAAAAGT---------AAAACAGTTATGCAAGCTGATA AAAGGGACAAAAGCTCTAACAGACATAGTGACCATGACACAGGAAGCAGAAATGGAATTA GAAGAGAACAGRGAGATTTTAARGGATCCAGTGCATGGGGTGTACTATGACCCAGAAAAG GAATTAATAGCAGAANTACAGAAACAGGGAAATAGTCAGTGGACTTATCAAATTTTCCAG GAACAGCA---------TAAGA------ACCTAAAAACAGGCAAATATGCTAGGCAAAGA TCAGCACATACTAATGACATAAGACAATTAGCAGAGGTAGTACAAAAAATAGCTACTGAA AGTATAGTAATCTGGGGAAAAACACC-----------------AAAATTCAGATTACCTG --------------TTCAAAAGGAGGTCTGGGAAACCTGGTGGTCAGAGTATTGGCAAGC CA------CCTGGATCCCAGACTGGGANTTCGTGAATACCCCTCCCCTTGT--------A AAATTATGGTACCAATTGGA------------------AACAGAACCCATACC------A GGAGCAGAAACGTTCTATGTGGATGGGGCAGCTAACAGAGAGACAAAGAAAGGAAAAGCA GGCTACGTCACTGATAGAGGCAGACAGAAAATAGTAAACTTAGAAAATACCACTAATCAG AAAGCAGAACTGACAGCTGTTTATCTAGCATTACAAG---ATGCAGAACATATAGTTAAT ATAGTCACTGATTCCCAATATGT------------------GTTAGGGATAATTCACTCC CAGCCAGAT-------CAAAGTGAGTCAGAATTGGTTAATCTAATAATAGAAGAGTTAAT AAAGAAGGAAAAAAGTTACCTTTCATGGGTGCCAGCACATAAAGGA---GTTGGAGGAAA TGAACAAGTAGATAAATTAGT--------------------TAGTTCT------------ ------------------------------------------------------------ ------------------------------------------GGGAATCAGAA------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------AAGT----------- -----------TCTCTTTTTAGATGGTATAGATTAAGCACAAGGAAGAACATGAGGAAAT ATCATAACAATTGGAGAGCTATGGCAAGTGATTTCAATATACCACATATAGTGGCCAAAG AACTAGTAGCCCGTTGTGATAAATGCCAACTAA------------AAGGAGAG------G CCATGCATGGGCAAGTAGACTGCAGCCCA------------GGCATATGGCAATTAGACT GCACACACCTAGAAGGA------------AAAGTTATCCTGGTGGCAGTACATGTAGCCA GTGGGTACCTAGAGGCAGAGGTCATTCCTGCAGAGACTGGACAGGAA---ACAGCTTATT TTATTCTAAAATTAGCAGGAA---GATGGCCTGTAAAAGTAATCCACACTGATAATGGGC CTAACTTTACCAGTAATACAGTTAAGGCAGCCTGCTGGTGGGCAGGCATCCAACAGGAAT TTGGAATTCCCTATAATCCACAAAGTCAAGGAGTGGTAGAATCAATGAATAAGGAATTAA AAAAGATCATAGGACAAATTAGAGAACAAGCAGAACACTTGAGGACAGCAGTCCAGATG- --------------GCAGTGTTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGT ACACTGCAGGAGAAAGAATTATAGACATCATAGCAACAGACATACAAACAACTAATCTAC AAA---AACAAATTTTAAAAGTT---CAAAATTTTCGGGTCTATTAC---------AGGG ACAGCAGAGATCC-----CATTTGGAAAGGACCTGCCAGACTTCTGTGGAAAGGTGAAGG GG-CAGTGGTAATTAAA------GAGAGAGAGGAAGTTAAAGTAATACCCAGAAGGAAAG CAAAAATAATTAGG------GATTATG---------------------------GAAAAC AGAT-----------GGCTGGTGATGATAGTATGGCAGGTGGACAGGATGAGAGTCAAGG CCTGGAA---------------------------TAG------------------ [22] HIV_1_Group_O ------------------------------------------------------------ ------------------------------------------------------------ --------------------------TTTTTTAGGGAAATACTGGC--------CTCCGG GGGG-------------CACGAGGCC----------AGGCAATTATGCAC---------- -----------------------------------------AGAGACAA----------- ---GTGCCCCCATCAGCCCCTCCAA----------------------------------- ------------------------------------------------------------ ----TGGAGGAGGAAATGAAGGGACAAGAGA----------------------------- ---------------------ATCAGA------AGGGGGAT------------------- -----------------CCGAACGAACTCTATCCGTTTGCCTCC--CTCAA--------- ---------ATCCCTCTTTGGGACAGACCAGTAGTTACAGCAAGGGTTGGGGGCCATCTA TGTGAAGTTTTGCTGGACACAGGGGCAGATGATACAGTACTAA------ACAACATACAA TT----------G---GAAGGAAAATGGACACCAAAAATGATAGGGGGTATAGGAGGTTT TATAAAAGTA-AGACAATATAATGATGTGACAGTAGAAAT---------------AGAGG GAAGAGAAGTACAGGGAACAGTATTGGTG---GGACTTACTC------------------ ------CTGTTAATATTATTGGAAGAAATATATTGACAGGATTAGGCTGTACACTAAA-- ----TTTCCCTA------TAAGCC---CCATAGCCCCAGTGCCAGTAAAACTGAAACCAG GAATGGATGGACCAAAATTAAAACAAT-GGCCCCTATCTAAAGAAAAAATAGAAGCCTTG ACAGCAATATGTCAGGAAATGGAACAAGAAGGAAAAATTTCAAGAATAGGACCTGAAAAT CCTTATAATACACCTATCTTTGCTATAAAAAAGAAAGATAGTAGTAAGTGGAGAAAGCTG GTAGATTTTAGGGAATTAAACAAGAGAACACAAGATTTCTGGGAGGTACAGTTAGGTATC CCACACCCGGGGGGTTTAAAGCAGAAGCAATCTGTTTCAGTCCTAGATGTAGGAGATGCT TATTTCTCATGCCCCTTAGACCCAGATTTCAGAAAATATACTGCTTTCACTATTCCTAGT GTAAACAATGAGACTCCAGGAACAAGATATCAATACAATGTCCTCCCGCAAGGATGGAAG GGGTCACCAGCTATATTCCAAAGTTCAATGATAAAAATTCTTGATCCATTTAGGAAAAAC AACCCA---GAATTAGAAATTTGTCAGTACATGGATGACCTATATGTAGGATCAGATTTA CCCCTGACAGAACATAGAAAAAAGGTAGAATTGCTTAGAGAACACTTATATCAGTGGGGA TTCACTACCCCTGATAAAAAACATCAAAA---------GGAACCTCCCTTTCTGTGGATG GGGTATGAACTCCATCCAGACAAATGGACAGTACAGCCCATCCAATTG------CCTAAC AA------GGAGGTATGGACAGTAAATGATATACAAAAACTAGTAGGAAAGTTAAATTGG GCAAGTCAAATCTATCAAGGAATTAGAGT---------AAAAGAATTGTGTAAGTTAATT AGAGGCACCAAGTCATTAACAGAAATAGTACCTTTAAGTAGAGAAGCAGAGCTGGAACTA GAAGAGAACAGAGAAAAGCTAAAGGAGCCAGTGCATGGTGCATACTATCAGCCTGACAAA GATTTATGGGTTAATATTCAGAAGCAAGGAGAAGGGCAATGGACTTATCAGATATATCAG GATGAACA---------TAAAA------ACCTCAAAACAGGAAAATATACTAGGCAAAAG GCCTCCCACACAAATGATATAAGACTATTAGCAGAAGTAATCCAGAAGGTGTCTCAAGAA TCTATAGTTATCTGGGGAAAATTGCC-----------------TAAATTTAAGCTGCCAG --------------TTACTAAAGAGACTTGGGAAACATGGTGGGCAGACTATTGGCAAGC CA------CTTGGATTCCAGAATGGGAATTTGTCAGCACACCCCCATTGAT--------C AAATTATGGTACCGGTTAGA------------------AAGTGAACCTATTAT------G GGGGCAGAAACATATTATGTAAATGGAGCAGCTAATAGAAATACAAAACTAGGAAAGGCA GGATATGTTACAGAACAAGGGAAACAAAAGATAATAAAATTAGAGGAGACCACCAATCAA AAGGCTGAATTAATGGCAATATTATTAGCCTTACAGG---ATTCCAAGAAAACAGTAAAC ATAGTAACAGATTCACAATATGC------------------ACTGGGCATCATCTCCTCC CAACCTACA-------CAGAGTGAATCCCCTATAGTTCAGCAGATAATAGAGGAACTAAC AAAAAAGGACCAGGTATATCTTGCATGGGTTCCTGCTCATAAAGGC---ATAGGAGGAAA TGAAAAAATAGATAAGTTAGT--------------------AAGCAAG------------ ------------------------------------------------------------ -------------------------------------------GATATTAGAA------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------GAGT----------- -----------CCTATTCCTAGAAGGGATAGACCAGGCACAA-GAAGATCATGA-AAAGT ATCATAGCAATTGGAGAGCATTAGCTAGTGACTTTGGACTACCACCAGTGGTAGCCAAGG AAATCATTGCTAATTGTCCTAAATGTCATATAA------------AAGGGGAA------G CAACTCATGGTCAGGTAGACTACAGTCCA------------AAAGTATGGCAAATAGATT GCACACATATAGAAGGC------------AAAGTCATAATAGTCGCTGTTCATGTGGCAA GTGGGTTTATAGAAGCAGAAGTGATACCAGCAGAAACGGGACAAGAA---ACTGCCTACT TCCTGTTAAAATTAGCTGCAA---GATGGCCTGTTAAAATAATACATACAGACAACGGGC CTAATTTTACAAGTGCAACCATGAAGGCTGCATGTTGGTGGACCAACATAAAACATGAGT TTGGAATACCATATAATCCACAGAGTCAAGGAGTAGTAGAAGCCATGAATAAGGAATTAA AATCAATTATACAGCAAGTGAGGGATCAAGCAGAACACTTAAGAACAGCAGTACAAATG- --------------GCAGTATTTGTTCACAATTATAAAAGAAAAGGGGGGATTGGGGGGT ACACTGCAGGAGAAAGGATAATAGACATGTTAGCATCACAAATACAAACAACAGAATTAC AAA---AACAAATTTTTAAAATT---CAAAAATTTCAGGTCTATTAC---------AGAG ACAGCAGAGATCC-----TATTTGGAAAGGACCGGCACAGCTCCTGTGGAAAGGTGAAGG AG-CAGTAGTCATACAA------GATAAAGGAGACATTAAGGTAGTACCAAGAAGGAAAG CAAAAATAATTAGA------CATTATG---------------------------GAAAAC AGAT-----------GGCAGGTACTGATAGTATGGCAAGTGGACAGACAGAAAGTGAAAA CGTGGAA---------------------------CAGCCTGGTGAAATACCATAA [23] HIV_1_Group_P ------------------------------------------------------------ ------------------------------------------------------------ --------------------------TTTTTTAGGAAAGATCTGGC--------CTCCTG GGGG-------------CAAGAGGCC----------AGGCAACTATGTAC---------- -----------------------------------------AGAAACAA----------- ---GTACAACCAACAGCCCCACCTA----------------------------------- ------------------------------------------------------------ ----TGGAGGAGGACGAGATGACCCGGGACA----------------------------- ---------------------AGCAGAGGGAGRAGGAGGAG------------------- -----------------GASGAGGAGGAATACCCTTTAACCTCC--CTCAG--------- ---------ATCACTCTTTGGGACAGACCAGTAATACCAGTAAGAGTAGGGGGGCATATT TGTGAGGCTTTATTAGATACAGGAGCTGATGACACAGTAGTAG------ATAAATTACCT TT----------A---GAAGGAAGATGGAAACCAAATATGATAGGAGGAATAGGGGGTTT TATAACAGTA-AAASAATTTGAAGWAGTTAAGGTAGAAAT---------------AGAAG GAAGAGAAGTTTACGGAACTGTATTAGTR---GGCCCAACCC------------------ ------CAGTAAAYATAATAGGAAGAAATATTTTGACATTAATTGGATGTACTCTAAG-- ----TTTCCCCA------TCAGCT---CCATAGAAATAGTACCAGTRAWATTAAAGGCAG GAAWGGATGGGCCTAAGGTAAAGCMAT-GGCCCTTRTCAAARGAAAAAATAGAAGCTTTA AGAGSTATTTGTCAAGAGATGGAACAGGAAGGAAAAATAACMAAAATTGGGCCTGAAAAT CCATATAACACCCCCATCTTTGCAATAAAAAAGAAAGATAGCAGCAARTGGAGGAAATTA GTAKACTTCAGAGAACTAAATAAGAGAACACAAGATTTTTGGGAAGTACAGHTGGGAATC CCTCATCCAGGAGGTCTTAAGAARAGRAAATCAGTGACAGTATTAGATGTGGGGGATGCT TATTTCTCCTGTCCTTTAGATCCAGATTTTAGAAAATATACAGCTTTTACTATACCTAGT GTAAATAATGAGACACCAGGAATTAGATATCAGTATAATGTTCTGCCTCAGGGATGGAAA GGATCGCCAGCCATCTTTCAGTATTCAATGACTAAGATCTTAGAACCCTTTAGGGAGAGT AAYCCA---GAAGTAGAAATCTATCAATACATGGATGATCTATATGTAGGGTCAGATTTG CCTTTGTCTGAACATAGACAGCGGGTAGAGAAACTTAGGGAACACCTCTATGTATGGGGG TTTACAACTCCTGACAAAAAACATCAAAA---------GGAGCCTCCTTTCCTCTGGATG GGATATGAGCTCCATCCTGACAAGTGGACGGTGCAACCCATCGTATTA------CCAGAA AA------GGAAGCTTGGACAGTAAATGACATCCAGAAGCTAGTAGGAAAGTTAAATTGG GCAAGTCAGATTTATCCAGGAATAAGGGT---------AAAAGAATTRTGCAAACTAATT AGAGGAACTAAATCCTTAACAGAAGTAGTTGCTCTTACTAGAGAAGCAGAATTAGAACTA GAGGAAAATAAAGAAATTTTAAAAGAACCAGTGCATGGAGTTTATTACCAACCAGAAAAG GAATTAATAGTAGACATACAGAAACAGGGAGAGGGACAATGGACTTATCAGATATACCAG GAAGAACA---------TAAAA------ACTTGAAGACAGGGAAATATGCCAGGCAAAAG GCCACTCACACCAATGATATAAGGCAACTGGCAGAAGTAATACAGAAGACATCACAAGAA AGCATAGTAATATGGGGAAAATTACC-----------------CAAGTTTAGACTACCAG --------------TAAATAGAAGTATGTGGGAGACTTGGTGGTCAGACTATTGGCAAGC CA------CCTGGATACCTGAATGGGAATTTGTTAGTACACCCCCTCTTAT--------T AAGCTCTGGTATCAGCTAGA------------------AAAAGACCCCATACC------A GGAATAGAAACCTTTTATGTAGATGGGGCAGCAAACAGAGAGACTAAATTAGGYAAAGCT GGATATGTAACAGATAGGGGTAGGCARAAGATAATCAAACTAGAAGGAACAACCAATCAA AAAGCAGAATTAGAAGCAGTGCTGTTAGCCTTAAAAG---AATCAGGAAAACAGGCTAAC ATAGTAACAGACTCCCAATATGT------------------RTTAGGGATCATCTCAGCA ACTCCAGAT-------CAAAGTGACTCCCCCCTAGTGCAAAAAATAATAGAAGAAATGAC AAARAAGGAAAAAGTATACCTATCATGGGTACCAGCACACAAAGGC---ATAGGGGGTAA TGAAGATATAGAYAAAYTAGT--------------------CAGTAAA------------ ------------------------------------------------------------ -------------------------------------------GACATTAGAA------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------GRGT----------- -----------GTTATTCCTAGAAGGCATAGAYCAAGCACAG-GARGATCATGA-AAAAT ATCACAGTAATTGGAAAGCCCTAGCTAGTGACTTTGGCCTTCCACCAATAGTGGCAAAAG AGATTATYAACAATTGTCCCAAATGTCATGTAA------------AAGGGGAA------G CCATGCATGGACAGGTAGACTGCAGTCCA------------GGAATTTGGCARCTGGACT GTACCCACACAGAAGGA------------AAAATTATCCTTGTAGCAGTCCATGTAGCCA GTGGTTTCCTGGAAGCAGAAGTGATTCCAGCAGAAACAGGACARGAA---ACTGCATAYT TTGTGCTCAAATTGGCAGCAA---GATGGCCTGTAAAAGTGATACACACAGACAATGGGC CTAACTTYACTAGYGCTGCAGTAAARGCAGCCTGTTGGTGGCTTAATATAACTCATGAGT TTGGGATACCCTACAATCCCCAGAGTCAGGGAGTAGTGGAATCAATGAATAAAGAATTAA AGAAAATCATACTTCAAGTACGAGATCAAGCTGAACACTTAAAGACAGCAGTTCAAATG- --------------GCAGTATTTGTTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGT ACACTGCTGGAGACAGGATCATAGATATTATGGCTACACAAATACAAACAACAGAATTAC AAA---AACAAATTTTAAAAATT---CAAAATTTTCGGGTCTATTAC---------AGAG ACAGCAGAGACCC-----TATTTGGAAAGGACCAGCGACGCTTCTGTGGAAAGGTGAAGG GG-CAGTAGTCATACAA------GACAAAGGAGATATTAAAGTAGTCCCTAGGAGAAAAG CAAAAATAATCAGA------GATTATG---------------------------GAAAAC AGAT-----------GGCAGGTGATGATTGTGTGGCAGATATCCAGAGAGAAAGTGAAAG CCTGGAA---------------------------TAG------------------ [24] SIVgor_Gorilla ------------------------------------------------------------ ------------------------------------------------------------ --------------------------TTTTTTAGGGAAATACTGGC--------CTCCAG GGGG-------------CGAGAGGCC----------AGGCAACTATGTGC---------- -----------------------------------------AGAAGCAA----------- ---GTGCAACCAACAGCCCCACCAA----------------------------------- ------------------------------------------------------------ ----TGGAGGAG------------GGAGAAA----------------------------- ---------------------AGGAGATGAGGAAACCAGAA------------------- -----------------AAGGAGGAACTTTATCCTCTAACTTCC--CTCAA--------- ---------ATCACTCTTTGGGACAGACCAGTAATACCTGTGAAGATAGGGGGACATCTA TGTGAGGCTTTGTTAGACACAGGGGCTGATGATACAGTAGTAG------AACACTTATCT TT----------A---GAAGGTAGGTGGAAACCAAGAATGATAGGAGGCATAGGAGGATT TATTAAAGTA-AAAGAATATGAAGATGTAGAAATAGAAAT---------------AGAAC ATAGGAAAGTAGTAGGGACAGTTCTAGTT---GGACCAACCC------------------ ------CTGTAAATATTATAGGAAGGAATATTTTAACAAAAATTGGATGTACCCTAAA-- ----TTTTCCCA------TAAGCT---CCATAGATGTAGTACCCGTATCTTTAAAGCCAG GGATGGATGGACCCAAAGTCAAGCAAT-GGCCTTTGTCAAAAGAAAAAATAGAAGCCTTA ACAGCTATTTGTCAGGAAATGGAACAGGAAGGCAAGATATCAAAAATTGGGCCTGAAAAT CCATATAATACACCTATTTTTGCCATAAAAAAGAAAGACAGTACTAAATGGAGAAAATTG GTAGATTTTAGAGAATTAAATAAACGAACACAGGATTTTTGGGAAGTTCAGTTAGGGATT CCTCACCCAGGAGGGCTTAAAAAGAAAAAATCAGTAACAGTACTGGATGTTGGGGACGCT TATTTTTCTTGTCCCTTAGACCCAGATTTTAGAAAATATACAGCTTTCACAATTCCTAGT GTGAATAATGAGACACCAGGGGTAAGGTATCAGTACAATGTACTACCCCAGGGATGGAAA GGATCTCCAGCAATTTTCCAGCACTCCATGACAAAAATACTTGATCCTTTCAGAAAGAAA AACCCA---GAGATAGAAATCTATCAGTACATGGATGACTTGTATGTAGGGTCAGATTTA CCTATAACAGAACATAGGCAGAAGGTAGAAAAACTCAGGGAACATTTATATGCATGGGGA TTCACCACTCCTGACAAAAAGCATCAAAA---------GGAACCTCCCTTTTTGTGGATG GGGTATGAGCTGCACCCTGATAAGTGGACAGTGCAGCCTATAAAGTTA------CCAGAA AA------GGAAAGTTGGACAGTCAATGATATCCAGAGATTGGTAGGTAAACTAAATTGG GCTAGTCAAATATATCCAGGGATAAGAGT---------AAAAGAACTCTGCAAATTAATT AGGGGTACTAAATCACTTACAGAAGTAGTGACCCTTAGTAAAGAAGCAGAATTAGAACTA GAAGAGAACAGGGAAATATTAAAAGAACCCGTACATGGAGTGTATTACCAGCCTGAAAAG GAATTAATAGTGAATGTGCAAAAACAAGGAGAAGGACAGTGGACTTATCAGATCTTCCAG GATGAATA---------CAAGA------ATCTAAAGACAGGAAAGTATGCTAGACAAAAG GCCACTCATACTAATGACATTAGACAGTTGGCAGAAGTGATACAAAAGGTCTCACAAGAA AGCATAGTTATCTGGGGAAAACTGCC-----------------TAAGTTCAGGCTACCCA --------------TATGTCGGAGTACCTGGGACGCTTTTTGGACTGACTATTGGCAGGC TT------CCTGGATCCCTGAGTGGGAATTTATTAGTACACCTCCCCTCAT--------C AAGCTCTGGTATCAATTGGA------------------AAAGGAACCCATACC------A GGAGCAGAAACCTTTTATGTAGATGGAGCAGCTAATAGAGAAAGTAAACAAGGAAAAGCA GGATATGTAACAGATAAGGGTAGACAGAAAATAAGAAAACTAGAGGGCACAACTAATCAG AAAGCAGAACTAGAGGCAGTCCTCTTGGCCTTAGAAG---AATCAGGAAAAAATGTTAAC ATAGTGACAGACTCCCAGTATGT------------------ACTAGGGATTATTGCAGCA AGTCCTGAT-------CAAAGTGACTCCCCCTTAGTGCAGAAAATAATAGAGGAAATGAC AACGAAGGAAAAAGTCTATTTAGCTTGGGTACCAGCTCACAAAGGT---ATAGGGGGAAA TGAAGAAATAGACAAATTAGT--------------------CAGTAAA------------ ------------------------------------------------------------ -------------------------------------------GATATCAGAA------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------GAGT----------- -----------CTTATTCCTAGAAGGCATAGATCAAGCGCAG-GAAGATCATGA-AAAAT ATCACAGTAATTGGAGAACACTAGCCAGTGACTTTGGTCTGCCGCCAGTGGTAGCCAAAG AAATCATCAATAGCTGCCCTAAGTGCCATGTAA------------AAGGGGAA------G CTAGGCATGGACAAGTAGATTGCAGCCCA------------GGTATCTGGCAGTTGGATT GCACTCACTTAGAAGGG------------AAAATCATTTTAGTAGCAGTCCATGTGGCCA GCGGCTTCATAGAAGCTGAAGTTATTCCAGCAGAAACAGGGCAGGAA---ACAGCCTACT TCCTGCTCAAGTTAGCAGCTA---GGTGGCCAGTAAAAATAATACACACAGACAATGGGC CTAATTTTACTAGTGCCACAGTCAAGGCTGCCTGTTGGTGGCTCAATGTAACACATGAGT TTGGAATTCCCTATAATCCCCAAAGTCAAGGAGTAGTGGAATCTATGAACAAAGAATTAA AAAAGATTATACAACAAGTGAGAGATCAAGCAGAACATTTAAAGACAGCAGTGCAGATG- --------------GCAGTATTTGTCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGAT ACACTGCAGGAGACAGGATAATAGACATGTTAGCCACACAAATACAAACAACAGAATTAC AAA---AACAAATTTTAAAAATT---CAAAATTTTCGGGTCTATTAC---------AGAG ACAGCAGAGACCC-----TATTTGGAAAGGACCAGCGACGCTCCTGTGGAAAGGTGAAGG GG-CTGTAGTCATTCAG------GACAAAGGGGACATTAAAGTAGTCCCTAGGAGAAAGG CAAAAATAATTAGG------GATTATG---------------------------GAAAAC AGAT-----------GGCAGGTGATGATTGTGTGGCAGATACCCAGGGAGAGAGTGAAAG CCTGGAA---------------------------CAGTCTAGTTAA--------- [25] SIVcpz_Eastern_Chimpanzee ------------------------------------------------------------ ------------------------------------------------------------ --------------------------TTTTTTAGGGAAACGCACCC--------CCTTGT GGGG-------------GTGCAGACC----------AGGGAACTTTGTGC---------- -----------------------------------------AGAACACC----------- ------------------------------------------------------------ ------------------------------------------------------------ ---CCAGAGAAAGGGAAGGCTCAGGAGCAGGAG-----------ACAGCACAGAC----- ------------------------ACCAGTGGTGCCAACTGCCC---------------- ---------CACCACTGGAGATGACGATGAAAGGCGGGTTCTCC--CTCAA--------- ---------GTCAATCTTTGGCAGCGACCAATGATGACAGTAAAAGTCCAGGGACAAGTC TGTCAAGCTCTTTTAGATACTGGAGCAGATGACAGTGTTTTTT------GTAACATCAAA TT----------A---AAGGGACAGTGGACACCAAAAACCATAGGAGGAATAGGAGGATT TGTACCAGTT-AGTGAGTACTATAATATTCCAGTACAAAT---------------TGGCA ATAAAGAAGTCAGAGCCACTGTCCTAGTG---GGAGAAACCC------------------ ------CCATTAATATAATAGGTAGAAATATTTTAAAGCAATTAGGATGTACCTTAAA-- ----TTTTCCTA------TTAGCC---CAATAGAGGTAGTAAAAGTACAATTAAAAGAAG GAATGGATGGGCCAAAAGTAAAGCAGT-GGCCCCTCTCCAAGGAGAAAATTGAGGCATTA ACAGAAATATGTAAGACATTGGAAAAGGAAGGAAAAATTTCTGCAGTTGGACCAGAAAAC CCATATAACACACCAATTTTTGCCATTAAGAAAAAGGATACCTCTAAATGGAGAAAATTA GTAGATTTCAGAGAACTGAATAAAAGAACTCAAGATTTTTGGGAGTTACAGCTAGGAATA CCCCATCCGGCAGGGTTAAGAAAAAGAAATATGGTGACAGTACTGGATGTAGGGGATGCC TACTTTTCCATTCCCCTGGATCCAGACTTCAGAAAGTATACAGCTTTTACCATACCCAGT CTCAATAATAACACACCAGGGAAAAGATTTCAGTATAACGTGTTACCTCAAGGTTGGAAG GGATCTCCAGCAATTTTTCAGAGCAGTATGACAAAAATCCTAGATCCTTTCAGAAAAGAA CACCCA---GATGTGGACATTTACCAATATATGGATGATCTTTACATAGGTTCAGATCTT AATGAAGAGGAACATAGGAAACTGATAAAGAAGCTGAGACAGCATCTGTTAACATGGGGA TTAGAGACCCCTGACAAAAAGTATCAGGA---------AAAACCTCCATTCATGTGGATG GGCTATGAGCTACATCCAAATAAATGGACAGTTCAAAATATCACATTA------CCAGAA CC------AGAGCAGTGGACAGTGAATCATATCCAGAAGTTGGTAGGCAAACTTAATTGG GCCAGTCAAATTTATCATGGAATAAAAAC---------TAAAGAACTATGCAAATTGATT AGAGGAGTAAAAGGATTAACTGAGCCAGTAGAAATGACCAGGGAAGCAGAATTGGAGTTA GAAGAAAATAAGCAGATTCTAAAAGAAAAGGTTCAAGGAGCATACTATGATCCTAAATTA CCTCTGCAAGCAGCAATACAGAAGCAGGGGCAAGGACAGTGGACATATCAGATATATCAG GAAGAAGG---------GAAAA------ATTTAAAAACAGGAAAATATGCAAAATCACCA GGTACCCACACCAATGAGATAAGACAATTAGCAGGACTGATACAGAAAATAGGCAATGAG AGCATAATAATTTGGGGTATTGTGCC-----------------TAAATTTTTATTACCTG --------------TATCCAAAGAGACATGGAGCCAGTGGTGGACTGATTACTGGCAAGT TA------CCTGGGTACCTGAGTGGGAATTTATTAACACCCCACCACTAAT--------C AGGCTATGGTACAATCTGTT------------------GTCTGACCCCATCCC------A GAAGCAGAAACCTTTTATGTAGATGGGGCAGCAAACAGAGACAGTAAAAAGGGAAGAGCA GGATATGTAACAAACAGAGGCAGATACAGGTCAAAGGACTTAGAGAACACCACTAATCAA CAAGCAGAATTATGGGCAGTAGATCTAGCCTTAAAAG---ACTCAGGAGCACAGGTAAAT ATAGTCACAGATTCCCAATATGT------------------TATGGGAGTTTTACAGGGA TTACCAGAT-------CAAAGTGACTCCCCCATAGTAGAGCAAATTATTCAAAAGTTAAC ACAAAAGACAGCAATTTATCTAGCATGGGTACCAGCCCATAAAGGT---ATAGGGGGTAA TGAAGAAGTAGACAAATTGGT--------------------TAGTAAA------------ ------------------------------------------------------------ -------------------------------------------AATATTAGAA------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------AAAT----------- -----------ATTATTCCTGGATGGAATTAATGAAGCACAG-GAAGACCATGA-TAAAT ATCACAGTAATTGGAAAGCTTTAGCTGATGAATATAATCTGCCCCCAGTTGTGGCTAAAG AAATTATTGCTCAGTGTCCAAAATGCCATATAA------------AAGGAGAG------G CTATACATGGACAGGTGGACTACAGTCCA------------GAAATCTGGCAAATAGACT GTACCCACCTAGAAGGA------------AAGGTCATCATAGTAGCAGTGCATGTAGCTA GTGGTTTCATAGAAGCAGAAGTCATACCAGAAGAAACAGGAAGAGAA---ACCGCTTACT TCATCCTAAAATTGGCAGGAA---GATGGCCTGTAAAGAAAATACATACAGATAATGGAC CAAATTTTACTAGTACAGCAGTGAAGGCAGCCTGCTGGTGGGCACAAATTCAACATGAAT TTGGGATTCCATATAATCCTCAAAGTCAAGGAGTAGTAGAATCTATGAATAAACAATTAA AGCAAATTATAGAGCAAGTCAGGGACCAAGCAGAGCAACTGAGGACAGCAGTAATCATG- --------------GCAGTGTATATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGAGT ACACTGCAGGGGAAAGACTATTAGACATACTAACTACAAATATACAGACAAAACAATTAC AAA---AACAAATTTTAAAAGTT---CAAAATTTTCGGGTTTATTAT---------AGGG ACGCCAGAGATCC-----AATTTGGAAGGGACCAGCGCGACTACTGTGGAAAGGTGAAGG GG-CAGTAGTAATAAAA------GAAGGAGAAGACATTAAAGTAGTACCCAGGAGAAAAG CAAAAATCATAAAA------GAGTATG---------------------------GAAAAC AGAT-----------GGCAGGTGCAGGTGGTATGGATGATAGACAGAATGAGACTTAG-- ------------------------------------------------------- [26] SIVagi_Agile_Mangabey ------------------------------------------------------------ ------------------------------------------------------------ --------------------------TTTTTTAGGGAATG--------------CTCCCT GGAAGCA----------GGGGAAACC----------GAGGAATTTTCCTT---------- -----------------------------------------TAACCTCC----------- ---GTGACACCCTCTGCTCCAGGGATGGA------------------------------- --------------------------------------TCAGTACGACCCTGCGGAAGCC ATGTTAAAGAGATACTTGGAGCAGGGGAAAA---------------AGCAGAAGC----- ------AGCAAAAGAGGCAGGAGGAGAAAAGCCAGCAGGGG------------------- -----------------AGAGCATACGAAGAGGCATTGTCCTCC--CTCAA--------- ---------TTCTCTCTTTGGAAACGACCAGTAACCTGGGTCACCATAGAGGGTCAAAAA GTAGAAGCCCTTTTAGACACAGGTGCTGATGATACAGTCATCA------GTGACATAGAA TT----------A---GGAGATAATTGGAAGCCAAAAATTATAGGAGGAATAGGGGGATA TATAAATGTA-AAACAGTATTATAATTGTAAAATAGAAAT---------------AGCAG GGAAAGTTACACATGCTCATGTATTAGTA---GGTCCAACAC------------------ ------CGGTAAATATAATTGGGAGAAATGTGTTACACAAATTAGGAGCTTCATTAAA-- ----TTTTCCAA------TAAGTA---AAGCAGAAATAATTAAAGTAGAGTTAAAGGAAG GTCAGGATGGACCAAGAGTAAAGCAGT-GGCCCCTCAGTAAAGAAAAAATAGAAGCCTTA ACAGAAATATGCAATGCAATGGAAAAGGAGGGAAAAATTAGTAGAATAGGACCAGAGAAT CCATATAATACTCCAATATTTTGTATTAGAAAGAAAGATTCGACCAAATGGAGAAAGCTA GTAGATTTCAGAGAACTAAATAAGAGGACACAGGATTTCTTTGAGGTACAGCTGGGGATT CCACATCCAGGAGGATTGAAGAAATGCAAGCAGATTACTGTGCTGGACATAGGGGACGCA TATTTTTCCTGCCCCCTCTATGAGCCCTTCAGAAAGTATACAGCTTTTACTATACCAGCA ATAAATAATCAAGGGCCAGGTATCAGATATCAATACAATGTGCTTCCTCAGGGATGGAAG GGCTCCCCAGCCATATTTCAAACCACTGCTAACAAAATTTTAGAACCAGTCAGGAAACAA AATCCA---GATTTAGTCATCTATCAGTATATGGATGACCTGTTTGTAGGATCAGACAGA ACAGAATTAGAACACAGTCAAATGATAAAGAAATTGAGGGAACATTTGCTCGCCTGGGGA TTTGAGACACCAGAAAAGAAATTTCAAGA---------TAAACCACCATTTGAATGGATG GGGTATGTACTCCACCCAGACAAGTGGACAGTGCAGGAAATTAAGTTG------CCAGAA AA------GGAAGAATGGACAGTGAATGACATACAGAAGTTGGTAGGCAAATTGAACTGG GCAAGTCAGATCTATGCAGGAATCAAAAC---------TAAAGAATTGTGCAAATTAATT AGAGGAATAAAAAGATTAGATGATAAGGTAGAATTTACAAAAGAAGCAGAATTAGAGTAT GAAGAAAATAAACTGCTATTAAAAGAAAAATTGCATGGGGTATATTATGACCCAGAAAAA CCATTGATAGCAAAAGTACAGAAATTAGAAGGAGGACAGTGGTCATATCAGGTAGAACAA GGAGATGG---------AAAAC------CTCTAAAAACAGGAAAATATGCCAAGCAGAAG ACAGCACATACCAATGAGATTAGAATGCTGGCAGGGTTAGTTCAGAAAATTTGTAAAGAA GCAATAGTTATTTGGGGAAAATTGCC-----------------TAAATTTGAATTGCCTG --------------TAGAAAGAGAGGTATGGGAACAATGGTGGGCTGATTATTGGCAAGT CT------CATGGATTCCAGAATGGGAATTTGTGAGCACGCCGCCTTTAAT--------T AGGCTGTGGTATAACCTAGT------------------AAAGGATCCCATACC------A GGAGAGGAGGTGTATTATGTGGATGGGGCAGCAAACAGAAATAGTAAATTAGGAAAAGCA GGATACATAACAGATAGAGGAAAAGAAAAAGTAAAAGAATTAGAAGATACCACCAATCAG AAGGCAGAATTAGAGGCTGTACTTTTAGCTTTAAAAG---ATTCAGGAAAAAGAGTAAAT ATAGTAACAGACTCTCAATATGT------------------GTTTGGCATATTAGCAGGA AGTCCAGAC-------ACTAGTGAGAGTCCCTTAGTACAGCAGATAATAGAGCAACTAAT AGGGAAAGAAGAAGTGTACCTCTCCTGGGTACCGGCACATAAGGGC---ATAGGAGGAAA TGAAGAGGTAGATAAATTAGT--------------------GAGCAGA------------ ------------------------------------------------------------ -------------------------------------------GGAATTAGAC------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------AAGT----------- -----------ATTATTCCTTGATGGCATAGAAAAAGCACAA-GAAGAACATGA-TAAAT ATCATAGCAATTGGAGAGCTATGGCAGAAGATTTCAGAATACCTCAAGTAGTAGCTAAGG AAATAGTGGCCCAATGTCCTAAGTGCCAGGTGA------------AAGGGGAG------G CAGTCCATGGGCAAACAGATGCTAGTCCA------------GGGACATGGCAAATGGATT GTACTCATTTGGAAGGA------------AAGGTAATCATAGTGGCAGTCCATGTAGCCA GTGGATATATAGAAGCAGAAGTCATACCAGCAGAAACAGGAAAAGAG---ACAGCATACT TCCTGTTAAAATTAGCAGCAA---GATGGCCAGTGAAACACTTACATACAGATAATGGAG CTAATTTCACAAGTGCAGCAGTACAGGCAGTCTGTTGGTGGGCTCAGATAGAGCACACCT TTGGAGTACCCTACAATCCTCAAAGTCAGGGAGTGGTTGAAAGTATGAATCATCAATTGA AGACAATAATAGGGCAAATTAGAGACCAAGCAGAGAAATTAGAAACAGCAGTTCAAATG- --------------GCAGTGCTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGT ACAGTGCAGGAGAAAGAATAATAGACATAATAGCATCAGAGTTACAAACAAATAAATTAC AAA---ATCAAATTTCAAAAATT---CAAAATTTTCGGGTTTATTTT---------AGAG AAGGCAGGGATCA-----GCAGTGGAAGGGACCGGCCACTCTCATCTGGAAAGGAGAAGG AG-CAGTGGTGATCCAG------GATGGACAGGATCTGAAGGTAGTCCCTAGAAGAAAGT GTAAAATTGTAAAA------GATTATGGCA------------------------GAAAAA ATGT-----------GGATAGTGAGACCAATATGGAGGGTGGACAGGAGGAAAATTGA-- ------------------------------------------------------- [27] SIVrcm_Red_Capped_Mangabey ------------------------------------------------------------ ------------------------------------------------------------ --------------------------TTTTTTAGGGAATG--------------CTCCCT GGAAGCA----------GGGGAAACC----------GAGGAACCTTCCCT---------- -----------------------------------------TGACTTCC----------- ---TTGAGACCTACTGCTCCAGGGAGAGAGGAAGGATGG--------------------- ---------------------------------AATCCCCAGTACGATCCAGCAGAAGAG ATGCTCAGGAAATACCTAGCATTGGGGAGAC---------------AGCACAAAC----- ------AGGAGCAGAGGAAAGAGAACAAGGAGAAAGTGGGG------------------- -----------------AGAGCCTACGAGGATGCGTTGTCCTCC--CTCAA--------- ---------TTCTCTCTTTGGAAGCGACCTGTAACATGGGTAGAAATAGAGGGGCAAAAG GTGGAGGCCTTATTAGATACAGGAGCAGATGGTACAGTTATAC------AAAATTTAGAT TT----------A---GGAGAAAATTGGAAGCCAAAAATTATAGGAGGAATAGGGGGATA TATAAATGTT-AAACAATTTAACCATTGTAAAATAACTAT---------------AGCAG GGAAGACTACACATGCTCATGTATTGGTA---GGACCAACAC------------------ ------CAGTAAATATAATTGGCAGGAATGTGTTGAGCAAATTAGGAGCCTCTCTAAA-- ----TTTTCCAA------TAAGTA---AAGCAGAAACAATAAAGGTAGAATTAAAGCCAG GACAAGATGGGCCTAGAGTAAAACAAT-GGCCTTTGAGTAAAGAGAAAATTGAAGCTTTA ACAGAGATTTGTAATGCCATGGAAAAGGAGGGAAAAATTTCTAGAATAGGACCAGAAAAT CCTTACAATACTCCAATATTTTGTATCAAAAAGAAAGATTCCACAAAATGGAGAAAGCTA GTAGATTTCAGAGAATTGAATAAAAGAACACAAGATTTCTTTGAGGTACAGCTGGGAATC CCGCATCCAGGAGGATTAAAACAATGCAGGCAAATTACAGTCTTAGATATTGGGGATGCG TATTTTTCATGCCCCCTATATGAGCCATTTAGAAAGTACACTGCTTTCACGATACTAGCT ATTAATAATCAAGGACCTGGCATTAGATATCAATATAATGTGTTGCCCCAGGGATGGAAG GGATCTCCAGCTATATTTCAAACAACAGCTAACAAAATTTTAGAACCATTTAGGAAAGAG AATCCA---GATGTAGTCATCTATCAGTATATGGATGATTTGTTTGTAGGGTCAGATAGG ACAGCACATGAACATAGTCAGATGATCAAAAGGCTCAGAGAGCATCTGCTGACCTGGGGT TTTGAGACTCCAGATAAGAAATTTCAGGA---------CAAGCCTCCCTTTGAATGGATG GGCTATGTGCTCCATCCAGACAAATGGACAGTACAAGAGATCAAGTTA------CTAGAA AA------AGAAGAATGGACAGTAAATGATATACAGAAATTGGTAGGGAAATTAAATTGG GCAAGTCAGATATATTCAGGAATAAAGAC---------AAAGGAGTTATGCAAACTAATA AGGGGAGTTAAGGCATTGGATGACAAGGTAGAATTTACAAGAGAAGCAGAATTAGAATAT GAAGAAAACAAAGCTGTCCTGAAGGAGAAAATACATGGGGTTTATTATAACCCAGAAAAA CCATTAATAGCTAAAGTTCAGAAATTAGAAGGAGGGCAATGGAGCTACCAGATAGAGCAG GGAGACTC---------AAAAC------CTCTAAAGACAGGGAAGTATGCAAAACAAAAG ACAGCACATACAAATGAAATTAGAATGCTGGCAGGCTTAGTACAGAAAATATGCAAAGAA GCTATAGTAATTTGGGGAAAGCTTCC-----------------AAAATTTGAGCTGCCAA --------------TAGAAAGAGAAGTATGGGAACAGTGGTGGTCGGATTACTGGCAGGT TT------CCTGGATTCCTGAATGGGAATTTGTTAGTACTCCACCACTAAT--------A AGGCTATGGTACAATCTAGT------------------AAAGGATCCTATACC------A GGAGAAGAAGTCTATTATGTAGATGGGGCAGCAAATAGGAATAGTAAGTTGGGAAAGGCA GGATATGTAACAGATAGGGGAAAAGAAAAGGTAAAAGAATTAGAAAATACTACCAATCAA AAAGCAGAGTTAGGAGCAGTATTACTGGCCTTAAAAG---ACTCAGGAAAAAGGGTAAAC ATAGTAACAGATTCTCGACATGT------------------GTTTGGCATATTAGCAGGA AGTCCAGAC-------ACAAGTGAGAGCCCCCTAGTACAACAGATTATAGAACAAATGAT AGGGAAGGAAGAAGTGTACCTCTCCTGGGTACCGGCACATAAAGGC---ATTGGGGGAAA TGAGCAGGTAGATAAATTAGT--------------------GAGTCAG------------ ------------------------------------------------------------ -------------------------------------------GGAATTAGAC------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------AGGT----------- -----------ACTATTCCTAGACGGGATAGGAAAAGCACAG-GAAGAACATGA-AAAAT ATCATAGCAATTGGAGAGCAATGGCAGAAGAATTTCAAATACCTCAAATAGTAGCAAAAG AAATAGTAGCCCAATGCCCCAAGTGTCAGGTAA------------AAGGAGAA------G CAGTACATGGACAGGTAGATGCTAGTCCA------------GGTACTTGGCAAATGGATT GCACACATCTAGAAGGA------------AAAATCATCATAGTAGCAGTCCATGTAGCCA GTGGATACATAGAAGCAGAAGTAATACCAGCAGAGACAGGAAAAGAG---ACAGCTCATT TCCTGTTAAAATTAGCAGCCA---GATGGCCAGTGAAACATTTACACACAGACAATGGAA CAAACTTTACAAGTGCAGCAGTGCAAGCAGACTGTTGGTGGGCTCAAATAGAGCACACCT TTGGAGTACCCTACAATCCTCAAAGCCAAGGAGTGGTAGAATCAATGAATCATCAATTGA AGATAATAATAGGGCAAATTAGAGATCAGGCAGAAAAGTTAGAGACAGCAGTTCAAATG- --------------GCAGTGCTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGT ACAGTGCAGGAGAAAGGATAATAGACATAATAGCATCAGACTTACAAACAACCAAATTAC AAA---ACCAAATTTCAAAAATT---CAAAATTTTCGGGTTTATTTC---------AGAG AAGGAAGGGATCA-----GCAGTGGAAGGGACCAGCTAAACTCATCTGGGAAGGAGAAGG GG-CTGTCGTGATCCAG------GATCAAGAGGATCTAAAGGTAGTCCCTAGAAGAAAGT GTAAGATCATAAAA------GATTATGGCA------------------------GAAAAG AGGT-----------GGATAGAGAGACCAATATGGAAGGTAGACAGGAGGAAAGTTGA-- ------------------------------------------------------- [28] SIVdrl_Drill ------------------------------------------------------------ ------------------------------------------------------------ --------------------------TTTTTTAGGGAATA--------------CTCCCT GGGGCAG----------CGGGAAACC----------CAGGAATTTTCCTC---------- -----------------------------------------AGGCCTCG----------- ---CTGACCCCATCAGCTCCTCCATTGCCAGGA--------------------------- ---------------------------------TACCTCCAGGAGGATCCGGCCGAGAGG ATGCTCCAAAAGTACATGGAGCAGGGAGCTC---------------AGCAGAAGA----- ------------GACAACAGAGACAACAACAGCAGAAGAGG------------------- -----------------GGCCCCTACGAGGAGGCTTACAACTCC--CTCAG--------- ---------TTCTCTCTTCGGCTCAGACCAACTACAATAGTAGAGGTAGAAGGGCAAAAG GTAGAGGCTTTACTAGACACAGGAGCAGATGATACAGTAATTC------AAGGATTGGAA TT----------A---ACAGGAAAATGGAAGCCACAGATTATAGGAGGAATTGGAGGAAC TATTAATGTG-AGACAATATTTTAATTGTGAAATTAAGAT---------------AGCAG GGAAAATTACTCATGCTTCGGTGTTGGTA---GGCCCTACCC------------------ ------CTGTAAATATTATAGGTAGAAATGTACTCTGTAAATTAGGAGCTACTCTTAA-- ----TTTTCCTG------TTAGTC---AAGTAGAACCAGTAAAAGTAACACTAAAACCAG GAATGGATGGACCAAAGATAAAACAAT-GGCCCCTCTCCAAGGAGAAAATTGAAGCCTTG AAAGAAATATGTGAGCAAATGGAGAAGGAAGGTCAAATAAGTAGAATAGGTCCAGAAAAT CCATACAACACACCGGTGTTTTGCATTAAGAAGAAAGATGGTACCAAATGGAGAAAATTA GTAGATTTCAGGCAATTAAATAAGGCAACACAGGACTTCTTTGAGGTGCAGTTGGGGATA CCACACCCGGGAGGCTTAAAAGCATGCGAACAGATCACTGTACTGGATGTAGGTGATGCC TATTTCTCATGCCCTCTGGATCCGGACTTTAGAAAGTACACTGCATTCACCATTCCATCG GTGAATAATCAGGGCCCAGGAATCAGGTATCAGTATAATGTCCTCCCACAGGGATGGAAA GGCTCACCTGCAATCTTCCAAGCTACAGCTGACAAGATCTTACAGCCATTCAGAGAGAAA AATCCA---GATGTGATTATATATCAGTACATGGATGATCTGTTTGTAGGAAGTGATAGA CCAAAACATTTACATGAGCAGATGATTAAAGAATTAAGAACACATTTAAAGTTCTGGGGG CTCGAGACCCCGGACAAAAAATTTCAGGA---------CAATCCTCCTTATGAATGGATG GGGTACCAGCTGCATCCAAAGAAGTGGACAGTGCAAGAAATTCGCTTG------CCTGAT AA------AGAAATTTGGACTGTTAATGATATTCAGAAATTAGTAGGAGTGCTTAATTGG GCTAGTCAAATTTATTCCGGAATTAAAAC---------AAAGGAGCTCTGTAAATTAATT AGGGGAGCCAAACCCCTAGATGAAGAAGTAGAATGGACTAGGGAAGCAGAACTAGAATAT GAAGAAAATAAACTAATAATAAAAGAGCAAATGCATGGGGTATATTATCAGCCAGAAAAA CCCCTAAAAGCCAAGATACAAAAACTGGGTAATGGACAATGGTCATATCAGATAGAACAA GATGATAA---------CAAGC------CACTAAAAACAGGAAAATATGCTAAGGTAAAG AATAGTCACACCAATGATATGAGAATGTTAGCAGGACTAGTACAAAAGATAGCAAAAGAG GCACTGGTAATCTGGGGAAGGTTGCC-----------------CATTTTCTACTTACCAG --------------TAGAAAGGGAAGTTTGGGAACAATGGTGGCAGGAGTACTGGCAGGT AA------CATGGATCCCTGATTGGGAATTTATATCAACACCCCATCTCAT--------C AAGTTATGGTATAACTTGCT------------------GAGTGACCCAATACC------A GGGGAAGAAGTTTATTATGTGGATGGAGCAGCTAACAGAGTTAGTAAAGAAGGAAAAGCT GGCTATGTTACCTCCAGGGGAAAAGAAAAAGTAATAGCCATAGAAGAAACCACCAATCAG AAGGCTGAATTACAGGCCATTCTGTTAGCCTTGAAGG---ACTCTGGTCCAAAAGTCAAT ATAGTGACGGATTCACAGTACGC------------------CATGGGTATAATATCCTCC TCCCCAGAA-------ATCAGTGACAATCCTATAGTGAATCAAATTATAGAACAAATGAT CAGTAAAGAAGCAGTTTACTTAAATTGGGTACCAGCACATAAAGGA---ATAGGAGGTAA TGAGGAGGAGGACAAACTAGT--------------------TAGTAGA------------ ------------------------------------------------------------ -------------------------------------------GGAATAAGAC------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------AAGT----------- -----------GTTATTCCTAGATAACATGGAAAAAGCACAG-GAAGAACATGA-TTTAT ACCATAATAATTGGAGATCCTTAGCACAAGAATTTGGTTTACCAGGGATAGTGGCAAAAG AAATAGTGGCACAGTGTCCTAAATGTCAAATAC------------ATGGAGAG------C CAATACATGGCCAAGTAGATGCAAGCCCA------------GGAACTTGGCAAATGGACT GCACACATTTAGAAGGA------------AAGATAATCATAGTGGCAGTCCACGTAGCAA GTGGACACATAGAAGCAGAAGTAATACCAGCAGAAACAGGAGAGAAA---ACAGCTTATT TTCTGCTAAAATTAGCTGGCA---GATGGCCAGTATCACACTTGCACACAGATAATGGAC CAAATTTCACCAGTGAAAAGGTAGCAACAGTATGCTGGTGGGCTAAGATAGAGCATACCA CAGGAGTTCCCTATAACCCCCAGAGTCAAGGAGTGGTAGAATCAATGAACAATCAGCTAA AGAAAATTATAGGACAAATTAGAGATCAGGCAGAAAAACTAGAGACAGCAGTTCAAATG- --------------GCAGTACTGATTCACAATTTTAAAAGAAAAGGGGGGATAGGGGAGT ACAGTGCAGCAGAAAGAATAGTAGACATTATAGCCTCTGACCTCTTAACAAGCAAACTAC AAC---AAAATATTCTCAAAATT---CAAAATTTTCGGGTTTATTAC---------AGAG AGGGAAGAGATCA-----GTTGTGGAAAGGACCAGCAGAACTTGTCTGGAAAGGGGAAGG AG-CGGTGGTCATCAAG------GAAGGTACTGACTTGAAAGTAATACCTAGAAGAAAAG CAAAGATCATTAAA------GATTATG---------------------------GAAAAA ATGT-----------GGATAGTCATACCAACATGGAGAGTTGA----------------- ------------------------------------------------------- [29] SIVmnd2_Mandrill ------------------------------------------------------------ ------------------------------------------------------------ --------------------------TTTTTTAGGGAATG--------------CTCCCT GGGGCAG----------TGGCAAGCC----------CAGGAACTTTCCTG---------- -----------------------------------------CCATGCCA----------- ---CTGACCCCATCAGCACCCCCGATGCCAGGG--------------------------- ---------------------------------------ATGGAGGATCCAGCAGAGAAG ATGTTATTAGACTATATGAGAAAGGGGCAAC---------------AACAGAGGG----- ---------CAGCAAAGGAGACCAAGCAGGAGAAGGACAAG------------------- -----------------GGTCCCTACGAGGCAGCTTACAACTCC--CTCAG--------- ---------TTCTCTCTTTGGAACAGACCAACTACAGTAGTAGAAATAGAGGGACAAAAG GTAGAAGCCCTACTGGACACTGGAGCAGATGATACAGTAATCA------AAGATGTAGAT TT----------A---ACAGGAAATTGGAAACCCCAAATTATAGGAGGAATTGGAGGAGC AATTAGGGTG-AAACAGTATTTCAATTGTAAAATAACAGT---------------AGCAG GAAAAAGTACTCATGCTTCAGTGCTAGTG---GGCCCTACCC------------------ ------CTGTAAATATTATAGGTAGAAATGTTCTTAAGAAGTTAGGATGTACTCTGAA-- ----TTTTCCTA------TTAGTA---AGATAGAGACAGTAAAAGTAACACTAAAACCAG GAATGGATGGACCAAGAATTAAACAGT-GGCCACTGTCTAAAGAAAAGATTTTAGCCTTA CAGACAATATGTGATGAAATGGAAAAGGAAGGCAAAATCTCTAGAATAGGTCCAGAAAAT CCATATAATACACCAGTATTTTGTATAAAAAAGAAAGATGGAACCAGCTGGAGAAAATTA GTAGATTTTAGGCAATTAAATAGAGTGACTCAGGATTTCTTTGAGGTGCAGCTAGGAATC CCACATCCGGGAGGCTTAAAACAATGTGAACAAATCACAATATTGGATATAGGAGATGCC TATTTTTCATGTCCTTTGGATGAGAGCTTTAGAAAGTACACTGCATTTACCATTCCATCG GTAAATAATCAAGGCCCAGGAATCAGGTACCAGTATAATGTTCTTCCACAGGGATGGAAA GGCTCTCCGGCAATATTTCAAGCAACGGCAGACAAAATTCTAAAAACATTCAAAGAGGAA TACCCA---GAAGTATTAATTTATCAATACATGGATGATCTGTTTGTGGGAAGTGATCTG AGTGCGTCAGAGCACAACAAAATGGTAAATAGGTTGAGGGAACATTTAAGGTTCTGGGGG CTCGAGACCCCAGACAAAAAGTTCCAAAA---------AGAACCTCCTTTTGAGTGGATG GGGTATGTGCTGCACCCACAGAAATGGACAGTCCAAAAGATACAGCTG------CCAGAA AA------AGAGACATGGACAGTAAATGATATTCAGAAACTGGTAGGAAAACTCAATTGG GCAAGTCAAATCTATTCCGGAATTAAAAC---------AAAAGAGCTCTGCAAATTGATC AGAGGGGCAAAACCTCTAGATGAAGTAGTAGAATGGACTAGGGAAGCAGAATTAGAATAT GAAGAAAATAAGTTAATAGTGCAGGAGGAAGTACATGGAGTTTATTATCAGCCAGGAAAA CCTCTGATGGCCAAGGTACAGAAACTGACACAGGGACAATGGAGCTATCAGATAGAACAG GAAGAGAA---------TAAGC------CTCTTAAGGTAGGGAAGTATGCTAGGACAAAA CATGCCCACACAAATGAGTTAAGGGTGCTTGCAGGATTAGTACAAAAAATAGCCAAAGAG TGCATAGTGATTTGGGGAGAATTGCC-----------------AAAATTCTATCTCCCCC --------------TGGAGAGGGAAGTATGGGATCAGTGGTGGCATGATTATTGGCAGGC AA------CATGGATCCCAGAATGGGAATTCATCTCAACACCACCACTAAT--------A AGGTTGTGGTATAACCTGTT------------------AAAAGAACCAATACC------A GGGGAGGATGTCTATTATGTGGATGGGGCAGCAAATAGAAACTCTAAGGAAGGGAAAGCA GGATACTATACAGCTAGGGGAAAAAGTAAAGTAATAGCCTTAGAAAACACAACTAATCAG AAAGCAGAATTAGAGGCAATACTGTTAGCCTTGAAAG---ATTCAGGTCCTAGGGCAAAT ATAGTCACAGACTCACAATATGC------------------ATTAGGCATACTTTCAGCC ACTCCAGAT-------CGATCAGACAACCCTATAGTTAGAGAAATAATCAACCAAATGAT AGCCAAAGAAGCTGTATACTTAGCATGGGTACCAGCTCATAAAGGC---ATAGGAGGCAA TGAACAAATAGACAAATTAGT--------------------AAGCAAA------------ ------------------------------------------------------------ -------------------------------------------GGAATCAGAC------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------AAGT----------- -----------ACTATTCCTGGAAGGAATAGATAAAGCTCAG-GAGGAACATGA-CAAAT ACCATAATAATTGGAGATCATTAAGTCAGGAATTTAGCATACCCCCTATAGTGGCAAAAG AAATAGTTGCACAGTGCCCAAAGTGTCAGGTAA------------AAGGAGAA------C CTATCCATGGACAGGTGGATGCGGCCCCA------------GGAACATGGCAAATGGATT GCACCCATCTAGAAGGA------------AAGGTTATCATAGTAGCAGTCCATGTGGCCA GTGGATATCTAGAAGCAGAAGTGATACCAGCAGAAACAGGAAAAGAA---ACAGCACATT TCCTGCTAAAACTAGCAGGAA---GATGGCCAGTGAAACATTTACATACTGACAATGGTC CAAACTTTGTCAGTGAGAAGGTAGCCACAGTGTGTTGGTGGGCTCAGATAGAGCACACCA CAGGAATACCCTATAACCCCCAAAGTCAAGGAGTTGTGGAAGCAAAAAATCATCATCTTA AGGTAATTATAGAGCAAGTTAGGGATCAAGCAGAGAGACTGGAGACAGCAGTACAAATG- --------------GCAGTACTCATTCACAATTTTAAAAGAAAAGGGGGGATAGGGGAGT ACAGTCCAGGAGAAAGAATAGTGGATATAATAACAACAGATATTCTAACTACCAAATTAC AAC---AAAATATTTCAAAAATT---CAAAATTTTCGGGTTTATTAC---------AGAG AAGGAAGGGAGCA-----GCTCTGGAAAGGACCAGCAGAACTCATTTGGAAAGGAGAAGG AG-CAGTGGTAATCAAA------GAAGGAACAGACTTAAAAGTTGTGCCCAGAAGAAAAG CTAAAATAATCAGG------GATTATG---------------------------GAAAAA CAGT-----------GGATAGTAATCCCCACATGGAGGATAGACAGGAGACAGCTTGA-- ------------------------------------------------------- [30] SIVagmSab_Afican_Green_Monkey_Sabaeus ------------------------------------------------------------ ------------------------------------------------------------ --------------------------TTTTTTAGGGTTTG--------------GCCCCT GGGGCAG----------AGGGAAACC----------CAGGAATTTCCCTC---------- -----------------------------------------TGACCTCC----------- ---ATCAGACCAACAGCTCCCCCAATGGAACGGGATTACAGCAGGCCGGAGGAAAATTGG TATGCAGACAGACCTCCGACCAG------AGGACCAGGGCCAGACGATCCAGCAACAGCC CTGTTAAAGCAGTATGCTGTTCAGGGGAAAC---------------GGCAGAAAC----- ------------AGCAGTGGCAAAACCACTCGCCACAACAG------------------- -----------------AGCCCCTACGAGGAGGCTTACAGCTCC--CTCAG--------- ---------GTCTCTCTTTGGAGAAGACCAATGAAAACTGTGTACATAGAGGGACAGAAA GTCACTGCTCTATTAGACACAGGAGCAGATGACTCAGTAATAC------AGGGTATAGAA TT----------A---GGAGACAATTGGAAACCAAGAATAATTGGAGGAATAGGAGGATG TATTAATGTA-AAAGCATACCACAATCAGGAGGTAAAAAT---------------AGAAG ATAAAACTTGTAAAGCTACCATTTTGGTA---GGAGAAACAC------------------ ------CAGTTAATATTATAGGAAGAAATGTCTTAGCACAATTAGGAGTTACTCTAAA-- ----TTTGACAC------AAAGAG---AGATAGAACCTATAAAAGTCCACTTAAAGCCAG GACAAGATGGGCCAAGGATAAGGCAAT-GGCCTTTGTCAAAAGAAAAAATAGAGGCCTTA AAGGCCATTTGTGAAGACTTAGAAAAACAAGGACATTTGGAAAGAATAGGGCCAGAAAAT CCATATAACACCCCAGTCTTTGCAATAAGGAAGAAAGATAAAACTCAGTGGAGAATACTC ATGGACTTCAGGCAGTTAAATAAAAGTACTCAAGACTTTCAGGAAGTCCAGTTAGGGATA CCCCACCCAGCAGGCTTACAGCAAAGGGAGCAGATTACAGTGTTGGACATAGGAGATGCC TATTTTAGCTGCCCTTTAGATCCAGACTTTCAGAAATATACAGCATTCACCATCCCATCA GTCAATAATAGGGAGCCAGGCATAAGATATCAGTATAAGGTGCTCCCACAGGGGTGGAAA GGCTCACCCACAATTTTTCAGACAACAGCCAACAAAATTCTGCAGGAATTTAGGCAAAAG AACCCA---GATGTAGATATATATCAATACATGGATGATATGTTAATAGCCAGTGATAGG CCAAAGGCAGAACATCTAGTAATGGTACAGCAGTTAAGAGACTATCTAGAAACTTGGGGG TTTAAAACCCCTGAAAAGAAGTTTCAAAA---------GGATCCACCATACCTCTGGATG GGGTATGAATTGTATCCAAAGAAATGGCAACTGCAGGAGATCACCCTA------CCAGAA AG------GGAAGAATGGACAGTGAATGATATTCAAAAATTAGTAGGAAAGTTAAATTGG GCAAGTCAAATTTACACAGGGATAAAGAC---------TAAACATTTGTGTAGACTAATT AGAGGAGCTAGACCTTTGACAGAGATAGTCCAATGGACAGAAGAGGCAGAACTAGAATTA GAAGAAAATAGACAGATCTTAAGACAAAAGCAGCAGGGACAATATTATGACCCTGCTCTT CCTTTAAGGGCTAAGGTTCTTAAACTGGGAGATGGCCAATGGGGATATCAGATATACCAG CCAGAAAA---------TAAAA------TACTGAAGGTTGGCAAATATGCAAAAATCAAA ACAGCACACACCAATGAATTAAGAATGTTAGCAGGCCTAGTACAGAAGATAGGAAAGGAA AGCATAGTCATCTGGGGACAGATACC-----------------TATTATGGAACTGCCAG --------------TAGAAAGAGAGCTCTGGGAACAATGGTGGTCTGACTATTGGCAGGT CA------CCTGGATCCCGGAATGGGAAATGGTCAGTACTCCTCAATTGAT--------T AGATTGTGGTACAAATTAGT------------------AAAAGATCCCATCCC------A GGAGAAGCAGTCTATTATGTAGATGGGGCAGCTAATAGAAATTCCAAAGAAGGAAAAGCA GGATACTTAACAGATAGAGGGGATCAAAAGGTGGTAGCATTAGAGAATACTACCAACCAG AAAGCAGAGTTAGAGGCCATTCTGTTAGCCTTAAGAG---ACTCTGGAAGCAAAGTAAAT ATAATAACAGACTCACAATATGC------------------TATGGGTATTATAGCAGGG GAACCTACA-------GAATCAGATAATAACATAGTACAACAAATTATAGAGGAACTAAT AAAGAAGGAGGCAGTGTATATAGCATGGGTACCTGCCCATAAAGGA---GTAGGTGGCAA TGAGGAAATTGATAAACTAGT--------------------TAGTCAA------------ ------------------------------------------------------------ -------------------------------------------GGAATAAGAC------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------AAGT----------- -----------ACTATTCCTGGACAGAATTGAAGAAGCACAA-GAAGAGCATGA-TAAAT ACCATGCCAATTGGAGGAGTATGCAACAAGAATTTGGCTTACCTGCTATAGTAGCAAAAG AAATAGTAGCGGCATGTCCTAAATGCCAGATAA------------AAGGGGAG------T CTGTACATGGGCAAGTAGATGCTAGTCCA------------GGAGTGTGGCAAATGGATT GTACACACCTAGAAGGA------------AAAATCATCATAGTGGCTGTTCATGTTGCTA GTGGATTTATAGAAGCAGAAGTAATCCCACAGGAAACAGGAAAAGCT---ACAGCACACT TCCTGCTGAAGTTAGCCAGCA---GATGGCCCATCACACAGCTGCATACAGATAATGGTA CCAACTTTACTAGCCAGCAAGTAGCAGCTATTTGCTGGTGGGGAAAAATAGAGCACACAT TTGGGGTACCCTACAACCCCCAAAGTCAGGGAGTAGTAGAATCTATGAATAAGCAGTTAA AAGAAATCATAGGACAAATTAGAGATGATGCAGAAAGATTGGAAACAGCAGTCATAATG- --------------GCAGTGCACATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGT ACTCTGCAGCAGAAAGACTAATCAATATAATACATACAGAACTAGAAACCAAAACACTTC AAC---AAAAAATTTCAAAAATT---CAAAATTTTCGGGTCTATTAC---------AGGG AAGGCAGAGACCC-----TGTGTGGAAAGGTCCGGCTAAGCTCATCTGGAAAGGAGAAGG AG-CAGTAGTTATACAA------GAACAGGGTGAATTGAAAACAATCCCAAGAAGAAAAG CCAAAATTATAAAA------GATTATG---------------------------GAAAAG CATT-----------GGATAGTCAGGCCCCTCTGGAAGGTAACGGGCGGACAGCAGGAGA GGTGGAC---------------------------TAG------------------ [31] SIVdeb_De_Brazzas_Monkey ------------------------------------------------------------ ------------------------------------------------------------ --------------------------TTTTTTAGGGAAAC--------------TTCCCT GGGGGAG----------GAGAGCCCC----------CAGGAATTTCATAGAG-------- ------------------------------------------------------------ ----------CAGCAACACCAGACATGGGGCA---------------------------- ------------------------------------------------------------ ----TAGGGAAGTACATACCGGAGGGAGGGGACGAGATCTTCTCCTCTTCCAGGG----- ---TACCGGAACAGAAACCCCAGCAGCAGGAGGAGACGAGG------------------- -----------------AGAGGGAAATACCCAGATTTATCGGAC--TTGAA--------- ---------GTCCCTCTTTGGAGAAGACCAGTAACCACAATAGAGATAGAGGGAAGAAGG GTGCAGGTTCTATTAGATACAGGGGCAGATGATACTATAATTCATGAGAAAGATATTCAA CT----------T---ACCTCACCCTTTGTCCCAAAAACAGTAGGGGGTCTGGGAGGTTT TATAAATGTA-AGATGTTATCCAGGGATAGAAATCCAATG---------------TCAAG GTAAGGTAGCAGTAGGGGAAGTCCTAGTG---GGAGAGACAC------------------ ------CCATTAATATTTTAGGGAGGAATTTCTTAGCACCCCTAGGCTTCTCGATAAA-- ----CATGCTAG------AGAGTC---AGATTCAATATACCCCAGTGAAATTAAAAGAAG GGAAGTCAGGACCAAAAGTCAAACAATGGGCCTCTAGCCAGGGAAAAGATAGAGGCTCTC AGGGAAATAGTGGGAAAGATGGTGGAGGAAGGCCAA-TGGCTCCTGCCTCACCCACCAAT CCATATAACTCACCTGTGTTTGCCATTAAAAAGAAAGACAAGAACAAATGGAGAATGTTA ATAGATCTTAGAGAATTGAACAAGGCAACACAACCAGTTTGGGAGGTCCAGACAGGGATC CCGCACCCAGCAGGTCTGCCACAGAAAAGGCAGATAACAGTTTTGGACATAGCAGATGCA TACTATTCTATACCATTAGATCCATCCTTTGCTCAGTATACGGCATTTACTATACCATCA GTTAATAACACAGCCCCTGGAGAGAGGTATGAGTTCAGGGTGCTGCCACAAGGATGGAGT GCATCACCAGCTATATTCCAACACACTGTTCATCGGGTATTGGAAGGATTTAGAAAGAAA TACCCA---GATGTACTCATAGTCCAGTACATGGATGACCTATTGGTAGGGTCAGACAGA ACAGAAGAACAACACAGACTAGTAGTCAAAACACTAAGAGATTATCTCCTAGAGAGGGGG TTAAAAACACCCCCAGAGAAATTTCAGGC---------AGAGCCCCCCTATCAGTGGATG GGATATGTCCTTCATCCAAAAAAGTGGACTACCCAACCAATTCAGATC------CCTGAG GA------AGAGGAATGGACTGTTAATAAAATACAGAAACTAGTAGGAATCTTGAATTGG GCAAGCCAAATATATTCAGGGATAAAAAC---------AAAACACCTGTGCAAGAGTATT AGAGGGGTTCCAGGGTTAACAGACCCTGTAAAGTTAACAGAAGAGGCACAGGCCGAGCTG GAAGAAGCCAGACAGATCTTAAAAGAACAAGTGTCAGGGACCTATTACAAAGAACAGGAG GACCTCATAGCAGACATTACTAAGCTTTCAGAAGGGCAATGGGGATACACCATTAGACAG TCAAAGG------------GAA------TCCTGAAAACAGGCAAATATGCAAAGGCAAAA GGGGCACATTTCAATGATTTTCATCAGATAGCAAAATTGATGATGAAGGTAGGAACAGAA AGCATAGTAACATGGGGGAGGTTACC-----------------CACATTTAGGTTACCTG --------------TCCAGAAGCAGGACTGGGATGGATGGTGGCATGAGCATTGGCAAGC CA------CTTGGATCCCAGAATGGGAGGCGGTACACACTCCTCCCCTAGT--------C AGATTATGGTATTCCTTGGT------------------TTCAGAACCTATAAA------A GAAGCAGATACATATTATGTGGATGGAGCAGCTAACAGAGAATCCAAGGAAGGGAAAGCA GGGTACATTTCAGAGAGAGGAAAACAGAGTGTAAAGGCCTTAGAAAACACTACCAATCAA AAGGCAGAATTAACAGCAGTTCTCATGGCCTTAGAAG---ATAGTGGGGAAAAGGTGAAC ATAGTAACGGACTCCCAGTATGT------------------ACTAAACATACTAACAGAA CACCCCACA-------ACCACTGAACATGAATTAGTAGAGAAAATAATTCAACAACTACA GAAGAAACAGGAAGTATATCTTCAGTGGGTGCCAGCTCATAAAGGT---CTGGGAGGTAA TGAACAAATAGATAAATTAGT--------------------TAGTAAG------------ ------------------------------------------------------------ -------------------------------------------GGAATTAGAA------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------AGAT----------- -----------CCTTTTTCTAGAAAGAGTAGAAGAGGCTCAG-GAAGATCACGA-TAAAT ACCACAGTAATTGGAAACAGCTAAGGGAGGAGTTTAATCTCCCCACCTTAGTTGCAAAGC AAATAATTAATCAATGTCCCAAATGTCAAATAC------------ATGGGGAA------C CCAAACATGGACAAGTCAATGCAGACTTG------------GGTATTTGGCAAATGGACT GCACACATTTAGAAGGA------------AAAGTCATAATAGTAGCAGTTCATGTGGCTA GTGGATTTACAGAAACCCAGGTGTTAAAGGAGGAAACAGGAAAACAG---ACAGCTTTAT TCCTGTTACAATTAGGGGCTA---GGTGGCCCATACAACAAGTTCACACAGACAATGGAC CCAACTTTATTAGTCAGGCATTTGCTGCCGCCTGTTGGTGGTTAGGGATAGAGCACACCA CAGGGGTTCCATACAACCCACAGAGTCAAGGAGTAGTAGAAAACAAAAATAGACAATTAA AGGATACAATCACACAAGTTAGGGAAGATGCACAACGATTGGAAACAGCAGTAGCTATG- --------------GCTACTCACATTCTTAATTTTAAAAGAAGGGGAGGAATAGGGGATA TGACCCCTTCAGAAAGGATAGTCAATATGATTAATACAGAACTAGAAATAAAATACCTAC AAC---AAAAAATTTCAAAATTT---TCAGGATTCAAAGTCTACTAC---------AGAG AAGGAGCTGATCC-----CAGTTGGAAAGGCCCAGCAACACTCCTGTGGAAAGGAGAAGG AG-CAGTGGTAATCAAATT---GGACACAGGGGATTTAAAAGTAGTTCCCAGAAGAAAAG CAAAAGTAATAAAG------GACTATG---------------------------GAAAAG ATGT-----------GGGTAGTAAGATTGACCCACAAGATACCCATGAA----------- ----------------------------------TAA------------------ [32] SIVden_Dents_Mona ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------ATGGAGCCCAGT GAGGGTC--------CAGCAGCAACC---------------------------------- ------------------------------------------------------------ ---ACAGTACCCACAAAATTTTCAAGAGGGGGGAAAC----------------------- ------------------------------------------------------------ ------AGACAATCTTGTCAGGAAGACAAGA---------------GGCAGAACA----- ---------------AGCAGTCCCATCAGGAGGACGAGGAG------------------- -----------------ACAACGAGGGAGAGTCTTTATCCTTCG--TTGAA--------- ---------GTCTCTCTTTGGAGACGACCAATAGGGCAGATCTGGGTTCAGGGACAAAGG GTAGAGGTCCTTATAGATACAGGGGCAGATGACACCATTATAGCAGAACAAGATATAAAT TTGGG-------A---ACAGAGGGATGGATCCCAAAAACAGTAGGGGGAATAGGAGGATA TATTAATGTT-CAGGCATACCCAGGGATAGAAATTAAGCT---------------TATGG ACAAAGTAGCGGTAGACACAGTATTAGTA---GGACCTACAC------------------ ------CCATAAACATCTTAGGAAGAAACTATCTTAGTAAGTTAGGAGTAACACTAAA-- ----CATGGCAGTACAGCAAATGC---GGCCTCAAGTCACCCCAGTAAAATTAAAACCAG GATTTGATGGCCCTAGAATAAAACAAT-GGCCTTTAACTACAGAGAAATTAAAAGCTTTA CAACAGATAGTGACACAGATGGAAAAGGAGGGAAGGTTGGAAAAGGCGCCACCCACCAAC CCTTACAATACACCTGTGTTTGTAATTCCAAAGAAAGACAAAACACAATATAGGATGTTA ATAGATTTCAGGAAATTAAATGAGGCCACCCAGGACTTCTGGGAAGTACAATTAGGTATA CCACATCCTGCAGGATTACAACAGAAGGAACACATCACTGTGTTAGACTTGAAAGATGCA TATTATAGTGTGCCTTTGGATCCAGATTTTGCACAATACACAGCATTTACAGTGCCGTCC ATTAACAATGAAGGACCAGGACAAAGGTACATTTTCAAAGTCTTACCACAAGGATGGGTA GGATCGCCTACCATTTTTCAGGCCACAGCAGATAAAATGCTTAGCCAATTTAGGAAGGCC CATCCT---GATGTGATTTTAATCCAGTATATGGATGATCTCTTGGTAGCATCAGATAGA TCCCTAGAACAGCACAGGAAAATGGTTAAGGAACTAAGAGACTTCTTGGCAGTATGGGGC TTTGAGACCCCTGATGCCAAATTTCAAGA---------AACACCACCCATACAATGGATG GGGTATGAATTACACCCCAAACACTGGCAAATACAGAAAATAGACCTGCCATTGCCAGAG GA------TGGGCAGTGGACGGTGAATGCAATTCAGAAGCTAGTAGGAGTATTGAATTGG GCAAGTCAGTTGTACTCAGGAATAAAGAC---------AAAAGAATTATGTAAGAGCATT AGAGGAGTAAAAGACTTAGGAGAAACCATTTCACTCACGGAGGGAGCAGAGGCAGAGCTT AAAGAAGCACAAGAAATATTAAAAGAAAGTATTTCAGGAAGTTATTATAGGCCAGAGAAA CCTTTGATAGCAGAGATCTCTAAATTAGGAGAAAATCAGTGGGGATATACAATCAAACAG GAAAAAC------------ATC------TACTCAAAACAGGCAAATACCATAAGGACAAA GGAAGCCATTATAACCCATATCAACAATTAGCCAAAGTGATGGCAAAAATAGGAAGAGAA GCCTTAGTAATCTGGGGCAGACTTCC-----------------TACTTTCAGACTCCCAG --------------TAAGCAAGGTAGATTGGGATGCATGGTGGTCAGAATATTGGCAAGT TA------ATTGGATACCTGACTGGGAAATGGTATCAACTCCACCCCTTCT--------A AGAAATTTTTATAATTTGGT------------------ATCAGAGCCCATAGA------C AAAGCGCCCACCTATTATACAGATGGAGCAGCAAATAGACAGACTAAACAAGGAAGAGCA GGATATGTGGCCACCAATGGCAAGCAAAAGGTAGTAACCTTGGAAGAAACAACCAATCAA AAGGCAGAATTAATAGGAGTCTTAATGGCCTTACAAG---ATAGTCCCAACAAGGTCAAC ATAGTCACTGATTCACAATATGC------------------CCTAGGCATCATAGCAGGT ACACCCACT-------ACATCTGAACATCAGATAGTGGAACAGATCATACAAGCTATGCA AGGCAAGGAAGAAATATACATCACCTGGGTTCCAGCCCACAAAGGA---ATAGGAGGCAA TACAGAAATAGACAAGCTAGT--------------------TAGTAAA------------ ------------------------------------------------------------ -------------------------------------------GGGATCAGAC------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------AAAT----------- -----------CCTATTCTTAGAACAAATTCCACAAGCTCAA-GAAGAACATGA-TAAAT ACCATAGCAATTGGAAAGAGATCAGAGATAAGTATGGCCTACCAACTATGGTAGCTAAGG AAATCATTAATGTCTGTCCAAAATGTCAGACAC------------ATGGGGAA------C CAATCAGAGGACAGGTGGATGCCTCTCTA------------GGAACATGGCAGATGGATT GCACCCACTTAGAGAAT------------AAAGTAATAATAGTAGCAGTAAATGCAGCCA GTGGGTACCTAGAGACAAAAATTTTGCCAGCGGAGACAGGCAAAGAA---ACAGCACTAT TTTTACTGCAGATAGCTGCTA---GATGGCCAATCACCAAATTACACACAGACAATGGAC CAAATTTTATCAGTCAAGCCATGCAGGCAGCATGTTGGTGGGCAAATATCAAACACACCA CAGGAGTTCCATATAATCCACAAAGTCAGGGTATTGTAGAAAATAAGAACAAGCAATTAA AGGAAGTTATAGCACTAGTAAGGGAAGATGCAGAAAGATTAGAAACAGCACTAGCAATG- --------------GCAACCCTCATTCTTAATTTTAAAAGAAGGGGAGGACTAGGGGATA TGACAGCAGCAGAAAGATACATTAACATGCTAAATACACATTTAGAAATACAACATACCA AAC---------AACCAAAATTT---TCGAATTTTAAGGTCTATTAC---------AGAG AGGGAGCTAATCC-----GCAATGGCAAGGACCAGCTGAGCTGCTTTGGAAAGGTGAAGG AG-CAGTTGTCATCAAGAC---ACAGGCAGGAGACATCTTCCCGGTACCTAGAAGAAAGG CAAAAATCATCAAG------CCATATAATGCAGAATCTAGGAAGGGAGAACAGAACAAAG GAAT-----------GGATAGTGAGACTGACATA-------------------------- ----------------------------------TAA------------------ [33] SIVwol_Wolfs_Mona_Monkey ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------------CAAATGGGTT GTACTCATTTGGAAAAC------------AAAGTGATCATAGTGGCAGTAAATGTAGCTA GTGGCTTTATAGAAACCAAGGTACTCCCAGGGGAAACAGGCAAGGAG---ACAGCACTAT TTGTGCTACAATTGGCAGCTA---GATGGCCAGTAAAACATCTTCATACGGATAATGGGC CAAATTTCATTAGTCAAACAATGGCAGCAGCCTGTTGGTGGGCAAATATAGAACATACAA CGGGAGTGCCATACAACCCGCAAAGTCAAGGGGTAGTAGAAAATAAGAATAAACAATTAA AAGAAGCTATAAATCTAATTAGGGAAGAAGCAGTAAGATTAGAGACAGCAGTGGCAATG- --------------GCCACTCTCATTTTGAATTTTAAAAGAAGGGGAGGAATAGGGGGGA TCGCTTCTTTTAATTGTTTATTC------------------------------------- ---------------------------------TTATTTTCTACTAC------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------------------------CCCT-- [34] SIVagmGri_African_Green_Monkey_Grivet ------------------------------------------------------------ -----------------------------------GTGCGGCAAAATTGGCCATATGGCA AAAGACTGCAAGAATGGACAGGCAAATTTTTTAGGGTATG--------------GCCATT GGGGAGG----------AGCGAAACC----------AAGAAATTTTGTGCAATACAGAG- -----------------------------------------GAGACACA--------GTT GGTCTGGAACCAACAGCCCCCCCAATGGAAA----------------------------- -------------------------------------CAGCTTACGATCCAGCAAAGAAG CTCCTCCAGCAGTATGCAGAGAAGGGACAGC---------------GCCTGAGAG----- ---------------AGGAGAGAGAACAGACAAGGAAACAG------------------- -----------------AAGGAGAAAGAAGTGGAGGATGTTTCC--TTGAG--------- ---------CTCCCTCTTTGGAGGAGACCAATGAAACGAGTCATCATAGAAGGAACGCCA GTGCAAGCCTTGTTAGATACAGGAGCAGATGACACTATAATTCAAGAAAAGGACTTGCAC TTTCCCCC----A---CATAAACCATGGCGTTCCAAGGTAGTAGGAGGTATAGGAGGAGG GATTCATGTC-AAAGAATATCAGGGGGTACAAGTACAATT---------------GGAGG ATAAAATCATCACCGGCTCAATTCTAATA---GGAAGTACAC------------------ ------CAATCAATATTATAGGAAGAAATATTTTAGCTCAGGCAGGCATGAAATTAGT-- ----TATGGGAGTTCTATCTAGTC---AGATTGAGGAAACAAAAGTACAACTAAAAGAAG GGAAAGATGGACCTAAATTGAAACAAT-GGCCCTTATCAAGAGAAAAAATTGAAGCTTTA ACAGAAATATGCAAACAAATGGAAGAGGAGGGAAAATTATCTAGGATAGGAGGAGAAAAT CCTTATAATACACCAGTGTTTGCCATAAAGAAAAAGGATAAAACACAATGGAGAATGCTT GTAGATTTCAGGGAACTAAACAAAGCTACTCAAGACTTTTTTGAGGTTCAGCTGGGAATT CCTCACCCAGCGGGCCTTCAGAAAAAGAAGCAAATCACAGTAATAGACATAGGGGATGCC TATTATTCAATACCATTATGCAAGGAATTCAGAAAATATACAGCATTTACCATCCCCTCA GTAAATAATACAGGGCCAGGGATAAGGTATCAGTTCAATTGTCTGCCTCAGGGATGGAAA GGATCTCCTACAATTTTCCAGAATACGGCAGCAAACATTTTAGAGGAGATCAAAAGGCAC ACTCCT---GGGTTAGAAATTGTCCAATACATGGACGATTTGTGGTTGGCGTCAGACCAT GATGAGACTAGACATAATCAACAGGTAGACATAGTAAGAAAGATGCTGCTAGAAAAAGGT CTAGAAACCCCAGACAAGAAAGTCCAAAG---------AGAACCGCCATGGGAATGGATG GGGTATAAATTGCATCCGAATAAATGGACCATTAACAAAATAGAATTACCC---CCCTTA GA------AGGAGAATGGACAGTAAACAAAATACAGAAGGTAGTAGGAGTTCTAAATTGG GCAAGTCAAATTTATCCAGGAATTAAAAC---------CAAACATACCTGTGCCATGTTG AGAGGGAAAAAGAACCTCCTAGAAGAAATAGTATGGACAGAAGAGGCAGAGGCAGAATAT AAGAACAATCAAGGGATAGTGCAGGAAACACAAGAAGGAACATACTATGACCCTCTCAAA GAATTAATAGCAACAGTTCAAAAGCAAGGAGAAGGGCAATGGACATACCAATTCACCCAA GAAGGGG------------CAG------TATTAAAGGTGGGAAGATATGCCAAGCAAAGA GAAACTCATACTAATGATCTAAGGACTCTAGCACACCTTGTCCAAAAAATCTGTAAGGAA GCACTTACCATTTGGGGAAGACTTCC-----------------ACGAGTACAACTCCCAG --------------TAGACAAGAAAACATGGGATATGTGGTGGCAGGACTATTGGCAAGT AT------CCTGGATACCAGAATGGGAGTTTGTTAGCACACCACTCCTAGT--------A AAACTGTGGTATTCCTTAGT------------------AAAAGAACCAATCAA------A GGAGAAGATGTTTATTATGTGGATGGGGCAGCATCCAAAGTGACCAAATTAGGTAAGGCA GGATATCTGTCAGAGAGAGGAAAAAGTAGAATTAGGGAATTAGAAAACACCACTAACCAA CAAGCAGAATTAACAGCAGTTAAGATGGCATTGGAGG---ACAGTGGAGAAAATGTAAAT ATAGTCACAGATTCTCAATATGT------------------AATGAACATCTTGACAGCA TGTCCACAG-------GAAAGTAACTCACCCTTAGTGGAACAGATAATACAAGCCCTAAT GAAAAAGAGGCAGGTCTACTTACAATGGGTACCAGCTCATAAGGGG---ATAGGAGGCAA TACAGAAATAGATAAATTAGT--------------------AAGCAAA------------ ------------------------------------------------------------ -------------------------------------------GGAATAAGAC------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------AGAT----------- -----------CCTCTTCTTAGATAGAATAGAAGAAGCACAA-GATGACCATGC-AAAGT ACCATAACAATTGGAGAAGTATGGTACAGGAATTTGGATTACCTAATATAGTAGCAAAAG AGATAGTAGCGGCATGTCCCAAATGCCAAATAA------------GAGGAGAA------C CTAAGCATGGACAGGTAGACGCCTCCATT------------GAAACTTGGCAGATGGACT GCACCCATTTAGAAGGA------------AAAGTTATAATAGTAGCAGTACATGTAGCCA GTGGATTCATAGAAGCAGAGGTGATCCCAAGAGAAACTGGGAAGGAG---ACAGCACACT TTCTGCTGAAACTGTTAGCAA---GATGGCCAGTGAAACATCTACACACTGATAATGGCC CAAACTTTACCTCTCAGAATGTGGCAGCGGTGTGCTGGTGGGGTAATATAGAGCACACCA CTGGAATACCTTATAACCCACAGTCACAGGGTAGTGTAGAAAGCATGAACAGACAGCTCA AGGAAATCATCTCTCAAATAAGAGATGATTGTGAGAGATTGGAGACAGCAGTGCAAATG- --------------GCTACGCATATCCACAATTTTAAAAGAAAGGGAGGAATAGGGGGTA TCTCTAGTGCAGAAAGATTGGTTAATATGCTAACAACACAACTAGAACTAAATACTCTAC AAA---ACCAAATCCAAAAAATT---TTGAATTTTAAGGTCTACTAC---------AGAG AAGGTAGAGATCC-----AGTGTGGAAAGGACCAGCGCGACTCATCTGGAAAGGAGAAGG CG-CGGTGGTAATTAAA------GAGGGGGAAGACATCAAGGTAGTCCCCAGGAGAAAGG CTAAGATTATCAAA------GATTATGGAG---------------------AGAGAAAAA CAAT-----------GGATAGTGAGGGTAGTATGGAGGGTGTCAGAGAGGCAAATAAGCA GATGGAGGGGGATAGTGACTTACAAGATCAGGAATAA------------------ [35] SIVgsn_Greater_Spot_Nosed_Monkey ------------------------------------------------------------ ------------------------------------------------------------ --------------------------TTTTTTAGACCTTG--------------GCCGGG GGCG-------------ACGAGCCCC----------CAGGAACTTTCCAG---------- -----------------------------------------TAACTTCC----------- ---CTGCTGCCATCAGCCCCGGCGGAGGAGGTGGAAC----------------------- -------------------------------------------------------CCCAG CAGCTCAACCTGTCTCCGCCGGTGGGGGAGC-------CC-------------------- --------------------CAGAACAAGGAGCAGAAGGCA------------------- -----------------GAAAAGAGGAACACTCTTTATCCCTCC--CTGTC--------- ---------ATCTCTCTTTGGGGAAGACCAATGAGAGAAGTCTCCATGGGGGGACAAGTG GTGTCCATGTTATTAGACACAGGGGCGGACGATACCATTGTCCAAGAATCAGCAATTGAA TT----------A---GACACACCATGGACACCAAAAACGGTAGGGGGGATAGGGGGTTT AATACAAGTA-AAGGAACATAGACATGTAGAAGTGATCTT---------------TAATG AAAAAAGAATCAAAGCCACTGTACTTGTA---GGGCCCACAC------------------ ------CAGTGAATATATTGGGAAGAAATTGTTTAAGCAAGTTAGGAGTAACCTTAAA-- ----CATGGTGC------AGCAGA---AACTAGAGCCCGTAGAAGTGCACCTAAAATCAG GAAAAGAAGGACCAAAGATTAAACAAT-GGCCCTTGTCTAAGGAAAAGATAGAGGCCTTA ACCCAAATAACACAAGAAATGCTCAAGTTAGGCCAATTGGAAAAGATAGGGCCAGAAAAT CCATACAACTCGCCAGTCTTTGCCATAAAAAAGAAAGACAAATCACAATGGAGAATGTTA ATAGATTTCAGGAAATTGAATGAGGCTACGCAAGACTTGGCTGAGGTCCAGTTGGGGATT CCGCACCCAGCAGGACTAGAACAAAAAGAGCACGTAACTATAATAGATATGAAAGACGCT TATTACAGTGTACCATTGTATGAAGAATTCAGAAAGTACACTGCATTTTCAGTACCATCA GTAAACAATCAGACCCCAGCTGAGAGGTATCAGTTCAAAGTTTTACCTCAGGGTTGGAAG GCGTCTCCAACCATTTTTCAGGCCACTGTAGCTTCCTTGTTATATCAGATTAGAGACCAG GAGCCA---GATGTGGTAATAATACAGTACATGGATGACTTGTTGATAGGATCAGATAGG AAATTGGCAGAGCATAGGCAAGTAGTGCACAAAATAAGAAATTTGTTGACGTCCTATAAC ATCCAGACCCCCGAGGCCAAACACCAACA---------AGATTATCCAGTCAGATGGCTC GGGTATGAGTTGCACCCTAAGGGATGGAGGCTCCAACCAGTGGAGCTC------CCAGAT CA------AGACATCTGGACAGTAAATGACATCCAAAAATTGGTAGGGAAGCTCAATTGG GTATCGCAAATACATCCTGGCATAAGGAC---------AAAACAGTTATGCAGATGTATT AGAGGAGCCAAAGGGCTAACAGAACAGGTGGAGCTCACTGAGGAAGCACAAATAGAGTTA GCAGAAAACAGAGAGATTCTAAAACAATCCTCAGAGGGCAGCTACTACGACGCAGAAAAG CCACTTGTGGTAGAAATTACCTCCCTAGGAGAACAGCAATGGGGATACATGTTCAGTCAG GACAGCA------------AGA------TGCTAAGATCAGGCAAATTTGCAAAAACCAGA ACTGCACATATAAACTCTTATCAGCAATTGGCAGATGCTATGACCAAAGTAGGTAGGGAA AGTCAGGTTACTTGGGGAAAAGTACC--------------TGACAAATTCAGGATCCCAG --------------TAGTCAAGGAGCAATGGGATACGTGGTGGATGAACTATTGGCAGGC AA------CATGGATTCCCACCATAGAAGCAGTACACACACCACATTTGTT--------G AGACAGTGGTACACCCTAGT------------------CTCGGAACCCCTAGA------A AATGCAGTCACCTATTATGTAGACGGGGCAGCAAATAGGACCTCTAAATTAGGAAAAGCT GGCTATGTGACCAATACAGGAAAATATAGAGCCATAGAACTAGAAGGAACTACAAATCAA CAAGCAGAACTCCAGGCAGTTCTTTTGGCATTAAAAG---AAGGACCACCAAGAATGAAC TTGGTCACAGATTCCCAATACGT------------------AATGGGGATCTTACAAAGC CAACCAGAA-------GTATCCACCTCTCCCTTAGTGGAACAAATCATACAAGAACTGTT AGGGAAAGAGGCCGTCTACTTGAGTTGGGTTCCAGCACACAAAGGG---ATAGGAGGAAA CACAGAGGTAGACAAATTAGT--------------------CAGCAGA------------ ------------------------------------------------------------ -------------------------------------------GGGATCCGCC------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------AAGT----------- -----------ACTCTTCATGGAGAACATAGAGCCCGCAGTA-GAGGACCATGA-AAAAT ATCATAGTAATTGGAAGTATTTAAGGGATCAATACAAAATCCCGGCACTATTGGCTAAAG AAATAGTAAACAAGTGCTCCAAATGTCAGATAC------------ATGGGGAA------C CAAAACATGGGCAAGTAAATGCAGAATTA------------GGCATATGGCAAATGGACT GCACACATCTGGAAGGC------------AAAGTTATCTTAGTGGCAGTCCACGTAGCCA GTGGGTATGTTTGGGCTAGGATAATACCCCAAGAAACAGGCAGACAA---ACTGCATTAA AGCTATTAGAATTAGCAGCAA---CATGGCCAGTAACTCACCTACATACAGATAATGGCC CCAATTTCATCTCTAAGGAACTGGAGGCAGCTTGTTGGTGGGCAAACATACAACACAGTA CAGGGGTGCCATACAACCCGCAAAGTCAAGGGGTAGTAGAAAACATGAACAAACAACTCA AGGAAACAATCCAAAAGATTAGAGATGAGGTCACATACTTAGAAACAGCAGTAGCACAA- --------------GCATGCTACATTCATAATTTTAAAAGAAAGGGAGGAATAGGGGATA TGTGCCCTACAGAGAGGTTAGTGAACATGATCCACACAGAATTAGAAACACAACACTTAA ACA---CACAAAGTTCCAAATTT---CAAAAATTTCGGGTTTATTAC---------AGGC AAGGAGCTAATCC-----TCATTGGCAAGGACCAGCAGTACTTCTCTGGAAGGGTGAAGG AG-CAGTAGTGGTCCAAAC---CCAAGCAGGTGAGATCATCACAGTCCCTAGAAGGAAAG CAAAGATCATCAAG------CCATATGGAGAGG---------------CAAAGGCAGAAG ATGT-----------GGGTAGTGCAGCCCATACAAGTAATGACAGAGAGGAAGGTAGAAT GGCTGAT---------------------------TAG------------------ [36] SIVmon_Mona_Monkey ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------ATGTTATTGGACACGGGRGCGGACGATACCATCGTCCAAGARCAAGACATAAAT CT----------A---GGAGAAAATTGGACACCCAAAATGGTAGGGGGAATAGGAGGCTT AATACAGGTT-AAGCAATTCAAAGGGGTAACGGTATCCTT---------------CCAGG GTAAAACAGTGAGAGCWACAGTTTTGCTG---GGACCRACCC------------------ ------CAATTAATATTTTGGGGAGAAACGTCCTCTCAAGGATGGGGATAACCCTGAA-- ----CATGYCCCAGGGAATCGCCC---AATCCCCATCCTTGACAGTGACCCTTAAACCAG GAAAAGATGGGCCAAAATTGAAACAAT-GGCCCCTCTCTAAAGAAAAGATAGAGGCTCTC ACCACCATTRCCCGGGAGATGATAGAATTAGGCCAATTGGAAGAAGCAGAGCCAACCAAT CCATATAATTCTCCTTGCTTCGCGATAAGGAAAAAGGATAAAACCAAATGGAGGATGCTC ATAGATTTCAGGGAATTAAACAAAGCAACACAAGATTTCTTTGAGGTACAATTAGGAATT CCACACCCGGCTGGACTCCAGAACATGGCAAATATAACTATAGTGGACATGAAAGATGCC TTTTACAGCATCCCTCTGGATGAAAATTTTAGGAAATATACTGCATTTTCAATACCTTCA GTAAATAATGCAGAACCAGCCGTGAGATATCAGTTCAGAGTGTTGCCCCAGGGRTGGAAA GGATCCCCAACAATATTTCAGTACTCAGCATCAGAGCTGCTRAAAGRAATCAGGAGAAAA TATCCA---GAGGTCACCCTCATCCAGTACATGGATGATCTACTCATAGGTTCAGACCAT TCCCTACCTGAACACAGGAAGATAGTAACAGCCATTAGAACGCTRCTATCAGAAAAGGGG ATTCAAACACCAATAGAGAAATATCAGGA---------CAAGTACCCATTGCAGTGGTTG GGGTATGAACTCCACCCCACCCATTGGACAGTCCAAAAGATAGAACTG------CCAGAA CA------AGACCAGTGGACAGTCAATGGGATCCAAAAATTAGTAGGGAAATTAAACTGG GCAGCGCAGATCTACCCAGGAATCAAGAC---------AAAGCATCTATGCARATGTATC CGRGGGRTAAAAGCCCTAACGGACATAGTGGAGCTATCAGACTTAGCCCAAGCAGAATTA GCAGAAAATAGGGAAATTCTAAGTCAACAGTCGACTGGGGGATATTACGACCCCCAGCTC GACTTGAAGGTAGAGATTACCTCCCTGGYAGAAGGACAGTGGGGGTACRGGTATTTCCAG GAARATA------------GGG------TTCTAAAGACAGGCAAATTCGCAAAGATTAAA AATGCCCACTCCAACACATACCAGCAATTGGCAGATGCTGTAACCAAACTAGGGAAGGAG GCCTTGGTCATTTGGGGAAAGCTACC-----------------AATATTTAGATTACCAG --------------TAAACAAAGAACAGTGGGACACATGGTGGGCCGACAATTGGCAAGT CA------CTTGGATACCAGAGATAGAGCCAGTACACTCTCCACACCTGCT--------T AGACAATGGTACACCTTAGT------------------GCAARATCCCATTGA------A CACGCTCCCACCTACTATGTAGATGGGGCGGCTAACAGAGCATCAAAAGAAGGGAAGGCA GGATATGTCACCAGTACAGGCCAAAGAAAGGTAATTCCATTAGAGCAGACTACCAACCAG AAGGCTGAACTAGAAGCAGTGCTTTTAGCATTGCAAA---ATGGGCCCGCTAGTATGAAT ATAGTAACAGACTCACAGTATGT------------------CATGGGAATCCTAGCATCA AAGCCAGAG-------GTCTCGGAGTCCCCAATAGTAGAGAAAATCATCCAGCAGCTCCT AGGAAAAAAGCAGGTATATTTGTCATGGGTCCCGGCCCACAAAGGC---ATAGGGGGAAA TGAAGAAGTRGACAAATTAGT--------------------AAGYCAA------------ ------------------------------------------------------------ -------------------------------------------GGGATCAGAC------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------AGGT----------- -----------CCTCTTCATGGAGAACATTGAACCRGCCCGA-GAGGATCATGA-AAAAT ATCACAGCAATTGGAAATATCTCAGGGATACTTATGGCATTCCAACACTCCTAGCCAAAG AGATAGTCAACCATTGCCCCAAGTGTCACACAC------------AAGGAGAA------C CCAAACATGGACAGGTAGAYTCAGATATA------------GGGATATGGCAAATGGATT GCACTCATTATGAAGGA------------AGTATCATCCTAGTAGCCGTTCATGTAGCTA GTGGCTACGTTTGGGCCAAAATTCTTCCCAGAGAAACAGGGAAAGAA---ACAGGCATTG CCCTGTTGGAACTTGCAGCGA---CATGGCCAATACATCATGTACACACTGACAATGGAC CAAATTTCACCAGTCAGGAATTTGCAGCYGCTGCATGGTGGGCAAACATAGAACACAGTA CTGGAGTGCCCTACAACCCACAAAGTCAAGGTGTAGTAGAAAACATGAATAAGCAAATCA AAACCACATTAGGGAAAATCAGGGATGAAGTTCAGTTCCTCTCTACAGCACTGGCACAA- --------------ACGCTCTACATTCTAAATTTTAAAAGAARGGGAGGAATAGGGGATA TCAGTCCAATAGAGAGGTTAGTCAACATGATTCATACAGATTTAGAACTACAACACTCAA ACA---ACCAAATTACAAAATTT---TCGAAATTTCGGGTTTATTTC---------AGAA CAGGCGCTGATCC-----TTCGTGGAAGGGACCAGCACATCTTCTCTGGAAGGGGGAAGG AG-CTTTGGTGATTAAGAC---AGATCAAGGTGAGGTAATAACAGTACCACGCAGGAAGG CAAAGATCATTCGC------CCTTATGGCT---------------------CCAAGGAAG ATGT-----------GGGTAGTAAGCCCAGTGCACATCAGATCAGAGAGGTGGATGGAAT GGCTGAT---------------------------TAG------------------ [37] SIVmus_Moustached_Guenon ------------------------------------------------------------ ------------------------------------------------------------ --------------------------TTTTTTAGGGGATCCCTTCG--------GCCTCC AGAA-------------AAGGAGGCC----------GAGGAACTTCCCCC---------- -----------------------------------------AGACCTCT----------- ---CTCTTGCCAACTGCTCCGCCAGAACAGGAG--------------------------- ------------------------------------------------------GGGGAA TTGGTCAATCTCTCTCCAGCAGTGGGTCCCG----------------------------- ------------------------------GGGAGGGGAAA------------------- -----------------CAGGACAGGAAGAGTCTCTATCCTTCC--CTGTC--------- ---------ATCCCTCTTTCAGGACGACCAGTCAGACCAGTAGAGATAGAAGGGCAGGTG GTGTCAATGCTGCTCGACACCGGAGCAGATGACACCATAATCCAGGATGCCCATATACAC CT----------A---GAAGGACCATGGAATCCCAAATCAGTAGGGGGAATAGGGGGAAA CATATCAGTC-AAAGAATATAGGGGAGTACAGGTTTGTTT---------------CAATG GAAAAACTATTAGGGCAACAGTATTAGTA---GGGCCAACAC------------------ ------CTATAAATATAATGGGGAGAAACTGTTTAAGCAAATTTGGCATTACTCTAAA-- ----CATGATAC------AGGGAA---AATTAGAACCAATAAAAGTGACCCTAAAAGAAG GAGCAAAAGGGCCAATGGTCAAGCAAT-GGCCTTTGACCCAGGAAAAGATCAGGGCCTTG GAGGACATAACCCAGCAGATGCTAAAAGTAGGCCAAATAGAGGAAATAGGACCAGAGAAT CCTTATAATTCTCCATGCTTTGCAATTAGGAAAAAGGACAAATCTAAGTGGAGAATGCTA ATAGATTTCAGGCAATTAAATGAGGCTACCCAAGAACTCGCAGAAGTTCAACTAGGAATC CCACATCCAGCAGGATTAATAGAGCATGAGCACGTTACAATAGTGGATATCAAGGACGCC TTTTACAGTGTCCCCCTAGATCCAGACTTTAGGAAGTACACAGCCTTTTCGCTGCCTCAG GTAAACAACTTGGGACCAGCAAGAAGATATCAATTCAAAGTGCTACCACAGGGCTGGAAA GGGTCTCCTACCATCTTCCAGTTCACAGCAGCCAAACTCTTAGAAGAGATTAAGAAAGCA AACCCA---GATGTCACTCTCATCCAATACATGGATGACCTCCTGATAGGATCCAACAGA GAATTATCAAGCCACAGGAAAGTAGTAGCACAGATTAGAAACATGCTCTTAAAGCTTGGG ATTCAAACCCCTCAAGAAAAATTTCAGGA---------AGACTACCCAGTCCAATGGTTA GGGTATGAGCTACACCCCCGGGGCTGGAAAATACAGCCCGTAGCATTG------CCACAA CA------AGAAGTTTGGACAGTTAATGATGTGCAAAAGCTGGTAGGGAAATTAAATTGG GCAGCACAAGCATACCCAGGTATCAAGAC---------AAAGCAATTATGCAAATGCATC AGGGGAGTAAAATCTCTGACTGAAGAGGTCCAGTTGACAGAGGAAGCACAGGCAGAATTG GCAGAAAATCAGGAGATCCTTCAACAGACAGTCCAGGGGGCATACTATGACCCAGAACAG CCATTAGTGGCAGAAATTGTCTCACTAGGAGACTCACAGTGGGGATATAACTTCACCCAG AGCAAGG------------GGG------TATTAAGGACAGGAAAATTTGCCAAAGTAAGG TCAGTACACACTAATAGCTATCAGCAATTGGCAGACGCAATGGCCAAAATAGGAAGAGAA AGCCTAGTCATTTGGGGGAAGCCCCC--------------TGACAAGGTCAGAATCCCAG --------------TGATCAAAGAACAGTGGGACCAGTGGTGGATAGCACACTGGCAGGT CT------CGTGGATACCTACCATAGAAGCAGTGCATACCACCCACCTGTT--------A AAACAGTGGTTCACATTGGT------------------ACCAGAACCATTAAA------A GAAGCTCCCACATATTATGTGGATGGAGCAGCAAATAGGGTATCCAAATTGGGAAAAGCA GGATACGTCACAAACACAGGGAAAGAAAAGGTAATTAGCCTAGAAAGTACTACCAACCAG AAAGCAGAATTGGAGGCAGTCTTATTGGCCTTAAAAG---AAGGGCCTCCTAGGATGAAT TTAGTCACAGATTCTCAGTATGT------------------CTTAGGGATAGTAGCTTCT CAGCCACAA-------GAATCCACTTCACCATTAGTAGAGCAAATAATACAGGAGCTACT GTCAAAAGAAGCCATATACTTATCATGGGTGCCAGCCCATAAGGGT---ATAGGAGGAAA TGAGGAAGTGGACAAATTAGT--------------------AAATAGT------------ ------------------------------------------------------------ -------------------------------------------GGAATCAGGC------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------AAGT----------- -----------CCTATTCATGGAACAGATAGAACCTGCAAAG-GAAGATCATGA-AAAAT ATCACAGTAATTGGAAGTACCTCAGGGATAAATACCAAATCCCAGCTTTGTTAGCCAAAG AAATAGTAAACCATTGTCCAAAATGCCAGACAC------------ATGGAGAA------C CAAAAACAGGGCAAGTCAATGCAGAGATA------------GGGGTATGGCAAATGGATT GCACCCACCTGGAGGGA------------AAAATCATTCTAGTAGCAGTCCATGTGGCTA GTGGGTACATGTGGGCAAAGATATTGCCAAGAGAAACAGGGAGGCAG---ACAGCTTTAG GCCTACTGGAGTTAGCATCAC---TATGGCCTGCGACACAAATCCATACAGATAATGGGG CTAACTTCATCAGTGCAGAATTCGAAGCAGCATGCTGGTGGGCCAGCATAGAACATACCA CAGGGGTACCATATAACCCTCAGAGTCAAGGAGTGGTAGAAAACAAAAACAAACAGTTAA AAGAAGCCATACACAAAATCAGGGAAGAGGTCACTTATTTGGAAACAGCAGTAGCACAA- --------------GCAGTCTTCATTTTAAATTTTAAAAAGAAGGGAGGAGTGGGGGACC TATCAAATGCTGAGAGGATAATCAACATGCTACACACAGAACTAGAACTACAACACTTAC AAC---AACAAAAATACAAATTT---CAAAATTTTCGGGTTTATTAT---------AGGA CAGGTTCTGATCC-----GTCTTGGAAGGGACCCGCCGTCTTACTGTGGAGAGGTGAAGG AG-CAGTAGTCATCAAAAC---AGACTCAGGAGAGGTAATCACAGTTCCTAGAAGAAAGG CAAAAATAATCAAA------CCCTATGGCG---------------------CCAAGGAAG ATGT-----------GGGTAGTAAGTCCGATACAGGAGACCTCAGAAAGGAAGATAGATT GGATAAT---------------------------TAG------------------ [38] SIVreg_Red_Eared_Guenon ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------------------------ATAGGAGGCAA CCACGAGGTAGACCAATTAGT--------------------CAGTAAA------------ ------------------------------------------------------------ -------------------------------------------GGAATTAGGA------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------TGGC----------- -----------ACTATTTATGGAACAGGTAGAACCAGCTAGG-GAAGATCATGA-TAAGT ATCACAGTAATTGGAAATTCCTCAGAGACACCTACCAAATTCCCACCATAATAGCCAAAG AGATTGTGAATCACTGCCCAAAGTGTCACACCC------------AAGGAGAA------C CCAAGAGAGGGCAAGTAAACACAGAATTA------------GGGCTATGGCAAATGGACT GTACTCACCTGGAAGGA------------AAGGTCATCTTAGTGGCCGCTAACCCAGCCA GTGGGTATGTATGGGCAAAAATCCTGAAAAGAGAGACCGGATTAGAG---ACAGCTTTAG GCCTTTTACAATTGGCAGCAA---CATGGCCCGTAGCACATATCCATACAGAYAAYGGGC CCAACTTYGTAAGCAGGGAGTTCCAAGCAGCAGCATGGTGGGCAAACATAGAACACAGCA CAGGTATACCCTACAACCCACAAAGCCAGGGAGTAGTAGAAAACATGAACAAATTGCTAA AGAAGACAATCAGTAAAATCAGAGAAGAAGTAGAATACTTAGAGACAGCCTTAGCACAA- --------------GCCTGCTTCATTTTGAATTTTAAAACAAAGGGAGGAATAGGGGAGA TAACCCCAGTAGAAAGACTAGTTAACATGATACACACAGAACTAGAAATCACACACACAC AAA---ACCACATTTCAAAATTT---TCGAAATT-------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------- [39] SIVlhoest_LHoests_Monkey ------------------------------------------------------------ --------------------------ATTTGCACAGTGCCCAAAA--------------- ---------CCAAAAGGAAAGGTGAATTTTTTAGGATATG--------------GTCCCT GGAGCAG----------CAAACCTCC----------AGGCAATTATCCTCTACTGGGAGG -----------------------AGCT------------------------------GCA GGGAGAATTCCATCAGCTCCCCCAATGGAGA----------------------------- -------------------------------------GTGCTCCAACAAAAGCAGAGAGA GCACTGGAGACTTACAGGACTTTAGGACAAC---------------AGCTGAAAA----- ------------------------GGCAGCAGCAGCAAGTC------------------- -----------------CCACAGAAATGTGTGGACGAGCCCTGC--CTGAA--------- ---------TTCACTCTTTCCAGACGACCAATAGAAAGTATATTGGTCAATGGGCAACCA GTGTCAGCACTGTTGGACACTGGGGCTGATGACACAATTTTTTCAGAAAATTCAGTAAGA AT----------A---GAAGGACCCTATACTCCAAGAGTAGTAGGGGGCATAGGGGGGCA AATTAGGGTA-AAAGAATATAGAGATGTCTTTATAGAAAT---------------AGCAG GAAAAACTACAGTAGGGACAGTCTTATTA---GGACCTACCC------------------ ------CAGTAGATATTGTAGGGAGGAATATTTTAACTGCAATGGGGGCCAAATTGAT-- ----TTTAGCTCAGTTAAGTGATA---AAATTCCTATTACAAAGGTATCTTTAAAACCTG GGTGTGATGGACCAAGAGTAAAGCAGT-GGCCTCTATCAAAAGAGAAAATAGAAGGCCTA CAAGCTATTTGTGATAGGTTAGAAAAAGAAGGAAAAATATCTCCAGTGGATCCAGGGAAC CCATACAATACTCCAATATTTGCTATCAAGAAGAAAGACAAAAATGAATGGAGAAAGTTA ATTGATTTCAGAAAGCTCAATGAATTAACTCAAGACTTTCATGAGCTACAATTAGGTATT CCACACCCAGCAGGTATCAAGAAATGCAAACAGATTACAGTAGTAGACATAGGAGATGCC TATTTCAGTATCCCTTTAGATCCAAATTACAGAAAGTATACAGCATTTACTATACCTTCT CTCAATAATCAAGAGCCAGGAAAAAGATATCAGTACAATGTGCTGCCACAAGGGTGGAAG GGGAGCCCTTGTATATTTCAGGGAACAGTAGCAGGACTTCTCTCAGAGTTTAGGAAATTA AATCCA---GACATGATCATTTACCAATATATGGATGATTTATTCATAGGATCAGATAGA GAGAGAAAAGGACATGATCAGGCAGTAAAAGAACTCAGAGAACTTCTTATGACATGGAAC TTAGAGACACCAGAAAAGAAGTTCCAAGC---------AGAGCCACCCTATCATTGGATG GGTTATGTACTGCATCCTGATAGGTGGGAAATAGAAAAGATTAAATTA------CCAGAG ATGGATCTAACAAAAACTACAGTAAATCAAATACAGAAACTGGTGGGAGTACTTAATTGG GCAGCTCAATTGTATGATGGTATTAGGAC---------AAAAGAACTCTGCAAATTAATA AGGGGAGTAAAACCCTTGGAAGAAATCATAAACTGGACAGAGGAAGCCTTGGAAGAATAT GGGCAGAACAAAGAGGTACTTAAAGAAAAGATGCAGGGAGCCTATTATGACCCAGAAAAG GAACTTATTGTCAGGGTACAGCAAAACAAAAAGGGGATAATTACTTTCCAGTGGAGACAA GGAAATA------------ACA------TCTTAAGAGCTGGGAGGTATCAAAGACAGAAG GCAGCACACACAAATCCCCTACAGAAATTAGTAGAAGCTATTCAGAAGATAGGAAAAGAA AGCATAGTCATCTGGGGCTTTGTGCC-----------------AAAAATTCAAGTCCCAG --------------TGACTAGAGAAGTCTGGGAGCACTGGTGGAGCGACCACTGGCAGGT TA------CATGGATTCCAGACTTAGAATTCATTTCTACCCCGCAATTAGA--------A CAAGAGTGGTACATTTGGGA------------------GGCAGAACCCATAAT------A GGGGTAGACACCTACTATGTAGATGGAGCAGCAGAAAAGGTAGGAAAAACAGGAAAAGCA GGATATATAACACAATCAGGGAAAGAGAAAGTAAAGGAGTTAACTGACACCACAAATCAG CAAGCAGAACTAGAGGCAGTTCTAATGGCATTACAAG---ATAGCAATAGTAAAGTAAAT ATAGTAACAGATTCACAATATGT------------------AATGAAAATATTGTCACAA AGACCAACA-------GAAACAGAACACCCCATAGTAAAAGACATCATAGAACAATGCAA GCAGAAAGATCAAGTTTATCTAGGATGGGTGCCTGCTCATAAAGGA---ATAGGAGGTAA TCAAGAGGTAGACCACCTAGT--------------------AAGTAAA------------ ------------------------------------------------------------ -------------------------------------------GGTATAAGACAGAA--- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------------------ACAGGT----------- -----------CATGTTTCTAGAAAAGATAGAACCTGCAGTA-GAAGAACATAG-CAAAT TCCATAACAATGCAAAGGATCTAGAAGAAAAATTTAACCTACCCCCCATGGTAGCCAAAC AAATTGTCAATGACTGTGCAAACTGTCAAAAGA------------AAGGAGAA------G CCATAACAGGACAAGTGGATGTCTCAGTG------------GGTATTTGGCAGCTAGACT GTACTCACTTAGAAGGA------------CAGGTCATTATAAATGCAGTCCATGTGGCCT CAGGCTTCATGGTTGCAGAAGTTATACCAGATGAGACAGGAAAAACA---ACGTCACATT TCCTGTTAAAATTATGCAGTA---GATGGCCTGTAAAACAAATACATACAGACAATGGTC CAAATTTTGTAAGTAAGGAGGTACAGGCAGTAACCTGGTGGATAGGGATAGAACATACAA CTGGGATACCTTATAACCCTCAGAGTCAAGGGGTTGTAGAAGCAAAAAACAAAGTTTTAA AAAGTATTATAGAAAGAGTAAGAGAAGATGCACAGCAACTAAAAACAGCAGTACTAATG- --------------GCAGTCCACATTCATAATTTTAAACAAAGGGGAGGACTAGGGGGGC TTACACCAGCAGAGAGGTTTATTAATATGATTAATGCAGAACTAGAAACACAATATCTAC AAA---AATTAAATTCAAAAATT---TTAAAATTTAAGGTTTATTAC---------AGAC AAGGAAGAGATCC-----TCAGTGGAAAGGACCAGCGCAACTTCTGTGGAAAGGAGAAGG TG-CTGTAGTGGTAAAA------GAAGGGGAGAACATCTTCTCAGTCCCCAGAAGAAAAG CAAAACTAGTAAAA------GATTATG---------------------------GAGAGG GACC--------AAAGGATAGTGAGAGTAGCCTGGATAACAAC----------------- ----------------------------------TAG------------------ [40] SIVprg_Preuss_Guenon ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------------------GGT---ATAGGAGGAAA TGCAGACATAGATCAACTAGT--------------------TAGTCAG------------ ------------------------------------------------------------ -------------------------------------------GGTATTAGACAGAA--- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------------------GCAAGT----------- -----------GCTATTCTTAGAAAAAATAGAACCTGCACAA-GAAGAACATGG-AAAAT ATCACAACAATGCTCAAGATTTGGTGGAAAAGTTTAGAATACCCTTGTTAATAGCTAAAC AAATAGTCAATGAATGCCACAAATGCCAGCAGA------------AAGGAGCA------G CTATAACAGGACAAGTCAATACAGAAGTA------------GGTATTTGGCAAATAGATT GTACTCACTTAGAGAAT------------CAGGTCATCATAGTTGCCATCCATGTGGCAT CAGGCTACATGGTAGCAGAAGTAATCCCTGATGAAACAGGGAAAGTA---ACAGCAGACT TTATCCTAAAACTTGCAGGAA---GGTGGCCTGTAAGACAAATACATACAGATAATGGGC CAAATTTTATAAGCAAAGAAGTAGAGGCGGTCTGCTGGTGGGCAGGAATAGAGCACACAA CAGGGATTCCATACAACCCTCAAAGTCAAGGAGTAGTAGAAGCTAAAAACAAAGTCTTAA AAAATCTTATTAGTAGAGTGAGAGAAGATGCACAACAATTAAAAACAGCAGTCAACATG- --------------GCAGTCCTCATTCATAATTTTAAAAGAAAGGGG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------- [41] SIVsun_Sun_Tailed_Monkey ACA--------------------------------------------------------- --------------------------------------------------------AGCT CAATGCCCACAAGGAAAACAGGTGAATTTTTTAGGGTATG--------------GCCCCT GGAACAG----------GGGGCCGCC----------AGGGAACTTTCCAGTC-------- ------------------------------------------------------------ ------ATGCCTTCTGCTCCGCCTCTAGAGGATCTGACATTGGGGAACAGAATGA----- ----------------------------------CACCACCCCAGTCAAAGGCAGAGAGA GCTCTGGAGACCTACAGACTGTTAGGACAGG---------------GCCTCAGAG----- ------------------------CACAGCAGAAGAGGAAG------------------- -----------------GAAAGGGGGGAATGTCAGGAGCCATGC--TTGAA--------- ---------TATGCTCTTTCCAGAAGACCCTTAGAGAAGGTCTTCATTAATGGGCAACCT GTGACTGCTTTATTGGACACGGGAGCAGATGACACAATAGTGTCTGAAGATTCTGTGTCC AT----------A---GAAGGTCACTGGAAGCCCAGGGTAGTGGGTGGTATAGGGGGACA AATTAGAGTA-AAAGAATATGCAGATGTCTTTGTAGAAAT---------------TAGGG ATAAAACAGCTACAGGAACAGTGTTGGTG---GGGCCAACAC------------------ ------CAGTAGATATCATAGGGAGAAATATTCTTTCAGCCTTAGGGGGAAGATTAGT-- ----TTTAGCCACTCTTAGTGAAA---AGATCCCAATTACAAAAGTTAAGTTAAAAGAAG GGGCCGCTGGACCAAAAGTGAAACAAT-GGCCCCTGTCAAGGGAGAAAATAGAAGGCCTA CAGAAAATTTGTGATAGATTGGAAGCAGAAGGAAAGATTAGCAGGGCAGACCCAGGGAAC CCTTATAACACACCAATTTTTGCTATAAAGAAGAAAGACAAAAATGAATGGAGAAAGTTA ATAGATTTTAGAGTACTAAATGGTATGACTCAAGACTTTCATGAGTTACAGTTAGGGATT CCTCATCCAGCAGGATTAAAGAAGTGTAAACAGATTACAGTAGTAGATGTGGGGGATGCA TACTTCTCAATACCATTGGATCCAGATTATAGAAAGTATACAGCATTCACAATACCGTCA GTAAATAATCAGGCACCAGGAAAAAGATATGTGTATAATGTCCTACCACAGGGCTGGAAA GGAAGTCCTTGCATCTTTCAGGGAACGGTAGCGAGCCTCTTAGAGAAATTTAGAAGACAG TATCCA---GAAGTTCAATTGTACCAATACATGGATGATTTACTCATAGGATCTGATTAT GAGAAAAAGAAGCATGAAGAAATAGTGAAACAATTGAGGCAGCTACTCATGGAATGGAAT TTAGAAACACCAGAGAAAAAATATCAGGG---------AGAGCCACCCTATAAGTGGATG GGGTACATATTACACCCAGACAGATGGGAGATAGAGAAGATAAAATTACC---CCCTCTA GA------AGAAGAGCCAACAGTGAATGACATACAGAAAATTGTAGGAGTTATCAATTGG GCTTCACAATTATATGAAGGGCTCAGAAC---------AAAAGAATTATGTAAACTAATT AGAGGGAATAAACCATTAGCAGAGAAAGTAAAGATGACAGAAGAAGCTAGGGAAGAATAC CAGAGTAATCAGGAGGTATTACAGGAGTCAGTATCAGGCAGTTACTATGAACCAGATAAA GAATTAATTTGCAGAGTGCAAAAGGTAAAGCAAGGAATATTAACCTTTCAATGGTTGCAG GGAAAAC------------AAG------TATTAAGGGTAGGAAGATATCAAAAGAGAGGG GCAGCACATGAGAATCCTTGTCAACAGTTAGCAGCTGCCCTACAAAAGATAGGAAGAGAA AGCATAGTTATATGGGGATTTGTGCC-----------------AAAGATACAGGTACCCA --------------TACAAAGAGAGATATGGAGTCAGTGGTGGGCAGACTACTGGCAGTG TA------CATGGATCCCTGAGTTAGAATTTGTCAGCACTCCTAAGTTGGA--------G CAAGAGTGGTATACTCTAGC------------------CACAGAACCAGTGCC------A GG---AGACACCTACTATGTGGATGGAGCAGCTGAAAAGCTAGAAAAGAGAGGGAAAGCA GGATATATAACCCAGGGAGGAAGATCCAGAGTTAAGAAATTGGAAAACACCACCAATCAG CAAGCAGAACTAGAGGCTATAAAAATGGCCTTGGAGG---ATAGTAGGAGCTCAGTTAAT ATAGTAACAGACTCACAGTATGC------------------CTTAAGACTGCTCAGTAAG AGACCCACA-------GAAACAGATTCAGAGCTAGTAAAGGAGATCGTAGAGCTCATAAG GCAAAAGGACCAGGTATACCTAGGTTGGGTACCGGCACACAAAGGA---ATAGGAGGAAA TCAAGAAATAGATCAACTAGT--------------------TAGCCAG------------ ------------------------------------------------------------ -------------------------------------------GGAATCAGAAAGAG--- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------------------ACAGGT----------- -----------AATGTTTATAGAAAAGATAGAACCAGCTGTA-GAAGAACATGG-GAAGT TCCATAACAATGCAGCCTCTTTGCAGGAGATGTTTGACATACCCCTAGTGGTAGCAAAGC AGATAGTCAATGAATGTGCACAATGTCAACAGA------------AAGGGGAA------G CCATAACAGGACAAGTAGATGCCTCAGTG------------GGCATCTGGCAGATAGATT GCACCCACATGGAAGAA------------AAAGTCATAATAGTAGCGGTGCATGTGGCTT CAGGGTATATGGTAGCAGAAGTACTACCCAATGAGCAAGGGAAGACA---ACAGCCACTT GGCTGTTAAAGCTCTGTGCCA---TGTGGCCAGTAAAACAGATACATACAGATAATGGGC CAAATTTCATCAGTAAAGATGTGGAGGCAGTATGTTGGTGGTTAGGCATACAGCATACAA CAGGGATACCTTACAACCCTCAGAGTCAAGGAGTAGTGGAAGCAAAGAACAAGGTATTAA AACAAATTATCAGCAGAATTAGAGAAGATGCACAGGAATTGAAAACTGCAGTACTCATG- --------------GCTCTGCACATTCATAATTTTAAACAAAGGGGAGGACTAGGGGGAA TGACAGCAGCAGAGAGGTTTATCAACATGATTAATGCAGATCTAGAAACACAATACTTAC AGA---AAATAAATTCAAAAATT---TTAAAATTTAAGGTCTACTAC---------AGAG AAGGAAGAGATCC-----TCAGTGGAAAGGACCTGCTAAACTTCTGTGGAAAGGGGAAGG AG-CAGTAGTCATCAAA------CAGGGTGAGAACATCCTGGTAGTACCTAGGAGAAAAG CAAAACTAGTAAAG------GACTATG---------------------------GAGGAG AATCCTCCTCAGTGGAGATGGTGGGA---------------------------------- ----------------------------------TGA------------------ [42] SIVmnd1_Mandrill ------------------------------------------------------------ ------------------------------------------------------------ --------------------------TTTTTTAGGGTATG--------------GCCCTT GGGGTCC----------CTCCAAACC----------GGGGAATTATCCGGCA-------- ---------------------------------------------------------CAA GAGGTGACTCCAACAGCTCCACCATTAGAGG----------------------------- -------------------------------------------AGAAACCTCTGCAGAAA ACTCTGAGCACTTATCAGAAATTAGGGAGAG----------------------------- ------------------GGCTCAGGCAGAAGATGAAGGAG------------------- -----------------GAGAAGAGAGAGGAGGATTTTCATTCC--CTGAG--------- ---------TACTCTCTTTCAAGAAGACCAATAGAAGAGGTCTCAGTGGATGGTGTCACT ATAAGAGCTCTACTAGATACAGGAGCTGATGATACCATCTTTAATGAAAGAAATATAAAA TT----------A---AAAGGAAATTGGCAGCCAAAAATTATAGGGGGAATAGGTGGAAA CTTAAGAGTA-AAACAGTATGATAATGTATATGTAGAAAT---------------AAGAG GGAAGGGAACATTTGGGACAGTATTGATA---GGACCTACTC------------------ ------CAATAGATATAATAGGGAGAAACATAATGGAAAAATTAGGAGGAAAATTAAT-- ----ATTGGCACAATTGTCTGATA---AAATACCAATAACAAAAGTGAAATTAAAACCAG GAGTAGATGGACCCAGAATAAAACAAT-GGCCTTTAAGTAAAGAGAAAATAGTTGGTCTT CAGAAAATATGTGATAGATTAGAGGAGGAAGGAAAAATTAGTAGGGTAGATCCAGGAAAT AATTACAATACACCTATCTTTGCCATAAAGAAGAAGGATAAAAATGAATGGAGAAAATTA ATAGACTTTAGAGAATTAAACAAGTTAACACAGGATTTTCATGAATTACAGTTAGGTATA CCTCACCCAGCAGGAATAAAAAAGTGTAAAAGAATAACAGTCCTAGATATAGGGGATGCC TATTTTAGTATACCTCTGGATCCAGATTATAGACCCTATACTGCCTTTACGGTACCATCA GTTAATAATCAAGCACCAGGAAAAAGATACATGTATAATGTTCTTCCTCAAGGGTGGAAG GGAAGTCCATGTATCTTTCAAGGGACAGTAGCATCACTGCTGGAGGTATTTAGAAAGAAC CATCCA---ACAGTACAGTTATATCAATACATGGATGATTTGTTTGTAGGGTCAGACTAT ACAGCAGAAGAGCATGAGAAAGCTATAGTAGAATTAAGGGCTTTATTAATGACATGGAAC TTAGAAACACCTGAAAAGAAATATCAGAA---------AGAACCTCCCTTTCATTGGATG GGGTATGAGTTACACCCAGATAAGTGGAAGATAGAAAAGGTTCAACTA------CCAGAA TTAGC---AGAACAGCCAACAGTAAATGAAATACAGAAATTGGTAGGTAAATTAAATTGG GCTGCACAGTTATATCCTGGGATCAAAAC---------AAAACAACTGTGCAAGCTAATA AGAGGAGGACTAAACATAACAGAGAAAGTCACAATGACAGAAGAAGCAAGACTGGAATAT GAACAAAATAAAGAGATCTTGGCTGAAGAACAAGAAGGGTCTTATTATGATCCTAATAAG GAATTATATGTAAGATTTCAGAAAACAACAGGAGGAGATATATCATTTCAATGGAAGCAA GGAAATA------------AGG------TTTTAAGAGCAGGGAAATATGGGAAACAGAAA ACAGCACATAGTAATGACCTCATGAAATTGGCAGGTGCTACGCAGAAGGTAGGAAGAGAA AGTATAGTAATCTGGGGTTTTGTACC-----------------AAAAATGCAGATACCCA --------------CTACAAGGGAGATATGGGAAGATTGGTGGCATGAGTATTGGCAGTG TA------CATGGATACCAGAAGTAGAATTTATCAGCACACCTATGTTAGA--------A AGGGAATGGTATAGCTTGTC------------------CCCAGAACCTCTAGA------G GGGGTAGAAACATATTATGTTGATGGAGCAGCTAACAGGGACAGTAAAATGGGAAAAGCA GGATATATTACAGATAGAGGTTTTCAAAGGGTAGAAGAATATCTAAATACCACCAATCAG CAGACAGAATTACATGCAGTAAAACTAGCTCTAGAAG---ATAGTGGAAGTTATGTTAAC ATAGTAACAGATTCACAATATGT------------------AGTAGGTATACTAGCAAGC AGACCTACT-------GAAACAGATCACCCCATAGTAAAGGAAATAATAGAATTAATGAA AGGAAAAGAAAAAATTTATTTAAGTTGGCTACCAGCACACAAAGGG---ATAGGAGGGAA TGAGCAAATAGATAAGCTAGT--------------------AAGTTCA------------ ------------------------------------------------------------ -------------------------------------------GGAATCAGAA------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------AAGT----------- -----------CTTATTCCTACAAAATATAGAACCAGCACAG-GAAGAACATGA-GAAAT ATCATAGCAATGAAGCACAATTAAGAGAGAAATTCCACTTACCAGCTCTAGTAGCCAAAC AGATTGTGCAAAGTTGCAGTAAGTGCTGTCATC------------ATGGAGAG------C CCATAAAGGGACAGACAGATGCTTCACTT------------GGAGTCTGGCAGATAGATT GCACACATCTGGAAAAT------------CAAATTATTATAGTAGCAGTGCATGTAGCTT CAGGCTTCATGAAGGCAGAAGTTATAACAGCAGAAACTGGAAAAAAG---ACAGCAGAGT TTCTGTTAAAGTTAGCAGCAC---AATGGCCTATTAGTAAACTACACACAGATAATGGGC CTAACTTTACTAGTCAGGAAGTAGAAACCATGTGTTGGTGGTTAGGGATAGAACACACAT TTGGAATACCCTATAACCCACAAAGTCAGGGGGTAGTGGAAAATAAAAATAAGTATCTAA AAGAATTGATTGAGAAAATAAGAGAAGATTGCAAAGAATTAAAAACAGCAGTAGCCATG- --------------GCCACATTCATTCATAATTTTAAACAAAGGGGAGGACTAGGGGGGA TGACAGCAGGAGAGAGAATAGTAAATATGATCAATACAGAATTAGAATATCAATATCAAC AAA---ATCAAATTTCAAAAAAT---TTAAATTTTAAGGTTTACTTC---------AGAG AAGGAAGAGATCA-----GCTGTGGAAAGGACCTGGTATCCTTTTGTGGAAAGGAGAAGG GG-CAGTAGTTTTAAAA------TATCAAGAAGAGATAAAGATAGTACCTAGAAGAAAGT GTAAAATAATAAAA------GATTATGGAG---------------------AGAGTGGAA A--------------GAATAGTCAGGTTAACTTGGAAAGTGTCTAG-------------- ------------------------------------------------------- [43] HIV_2_Group_A ------------------------------------------------------------ ------------------------------------------------------------ -----------------ACAGGCGGGTTTTTTAGGGATTG--------------GCCCCT GGGG-------------AAAGAAGCC----------CCGCAATTTCCCCG---------- -----------------------------------------TGGCCCAA-GTTCCA-CAG GGGCTAACACCAACAGCACCCCCAT----------------------------------- -------------------------------------------TGGATCCAGCAGTGGAT CTACTGGAGAAATATATGCAGCAAGGGAAAA---------------GGCAGAGGG----- ------AGCAGAGACAGAGACCATACAAAGAGGTGACAGAGGACTTACTGCACCTCGAAC AAGGAGAGGCCCCATGCAGGGAGACAACAGAGGACTTGCTGCAC--CTCAA--------- ---------TTCTCTCTTTGGAAAAGACCAGTAGTCACAGCACACATTGAGGGTCAGCCA GTAGAAGTTTTGTTAGACACAGGGGCTGATGACTCAATAGTAG------CAGGAATAGAA TT----------A---GGGAGCAATTATAGCCCAAAAATAGTGGGGGGAATAGGAGGATT CATAAATACC-AAAGAATATAAAAATGTGGAAATAGAAGT---------------TCTAG GTAAAAGGGTAAGGGCCACTATAATGACA---GGCGACACCC------------------ ------CAATCAACATTTTTGGCAGAAATATTCTGACAGCCTTAGGCATGTCATTAAA-- ----TCTACCAG------TCGCCA---AGATAGAACCAATAAAAATAATGCTAAAGCCAG GAAAAGATGGACCAAGATTGAGACAAT-GGCCCTTGACAAAAGAAAAAATAGAAGCACTA AAAGAGATCTGTGAAAAAATGGAAAAAGAAGGCCAGCTAGAGGAAGCACCTCCAACTAAT CCTTATAATACCCCCACATTTGCAATCAGGAAAAAGGACAAGAACAAATGGAGGATGCTA ATAGATTTTAGAGAGCTAAACAAAGTAACCCAAGATTTCACAGAAATCCAGTTAGGAATT CCACACCCAGCAGGATTAGCCAAAAAGAGAAGAATTACTGTACTAGATGTAGGGGATGCT TATTTTTCCATACCATTACATGAAGACTTTAGACAGTACACTGCATTTACTCTACCATCA GTGAACAATGCAGAACCAGGAAAAAGATACATATATAAAGTCTTACCGCAGGGGTGGAAA GGATCACCAGCAATTTTTCAGTACACAATGAGGCAGGTCTTAGAGCCATTCAGAAAAGCA AACTCA---GATGTCATTATCATTCAGTACATGGATGATATCTTAATAGCTAGTGACAGG ACAGACTTAGAACATGACAAAGTGGTTCTGCAGCTAAAGGAACTTCTAAATAACCTAGGA TTCTCTACCCCAGATGAGAAGTTCCAAAA---------AGACCCTCCATACCGCTGGATG GGCTATGAACTGTGGCCAACTAAATGGAAGTTGCAGAAAATACAATTG------CCCCAA AA------GGAGGTGTGGACAGTCAATGACATCCAAAAGCTAGTAGGTGTCCTAAATTGG GCAGCACAAATCTACCCAGGGATAAAGAC---------CAAACACTTGTGTAGATTAATT AGAGGAAAAATGACACTCACAGAAGAGGTACAATGGACAGAATTAGCAGAAGCAGAACTA GAAGAAAACAGAATTATCTTAAGCCAAGAACAAGAGGGACACTACTACCAGGAAGAAAAG GAGTTAGAAGCAACAGTTCAAAAGGATCAAGACAATCAGTGGACATATAAGATACACCAG GAAGAAA------------AAA------TTCTAAAAGTAGGAAAATATGCAAAAATAAAA CATACCCATACCAATGGAGTCAAATTATTAGCACAGGTAGTTCAAAAAATAGGAAAAGAA GCACTAGTCATTTGAGGACGAATACC-----------------TAAATTTCACCTACCAG --------------TAGAGAGAGAGGTCTGGGAGCAGTGGTGGGATAACTACTGGCAGGT GA------CATGGATCCCAGACTGGGACTTCGTATCTACCCCACCACTGGT--------C AGACTAGCATTTAACTTAGT------------------AGGGGATCCTATACC------A GGCACAGAGACCTTCTACACAGATGGATCCTGCAATAGGCAATCAAAAGAAGGAAAAGCA GGATATGTAACAGATAGAGGAAGAGACAAGGTAAAAATACTAGAGCAAACTACCAATCAG CAAGCAGAGTTAGAAGCCTTTGCGATGGCACTAACAG---ACTCAGGTCCAAAAGCTAAT ATTATAGTAGACTCACAGTATGT------------------AATGGGAATAGTGGCAGGC CAACCAACA-------GAGTCAGAAAATAGAATAGTAAATCAAATCATAGAAGAAATGAT AAAAAAGGAAGCAATCTATGTTGCATGGGTCCCAGCCCATAAAGGC---ATAGGGGGAAA CCAGGAAGTAGATCATTTAGT--------------------GAGTCAA------------ ------------------------------------------------------------ -------------------------------------------GGCATCAGAC------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------AAGT----------- -----------ACTGTTCCTAGAAAAGATAGAGCCTGCTCAG-GAAGAACATGA-AAAAT ATCATACCAATGTAAAAGAGCTATGCCATAAATTTGATATACCCCAACTAGTGGCAAGAC AAATAGTAAACACATGTGCCCAATATCAACAGA------------AAGGGGAG------G CTATACATGGGCAAGTAAATGCAGAAGTG------------GGCACCTGGCAAATGGACT GCACACATCTAGAGGGA------------AAAATCATCATAGTAGCAGTACATGTTGCAA GTGGATTTATAGAAGCAGAAGTCATCCCACAGGAATCAGGAAGGCAA---ACAGCACTCT TCCTATTAAAATTGGCTAGCA---GGTGGCCAATAACACACTTACACACAGATAATGGTG CCAACTTCACTTCACAGGAAGTAAAGATGGTAGCATGGTGGGTAGGCATAGAACAAACCT TTGGAGTACCTTACAACCCACAAAGCCAAGGAGTAGTAGAAGCAATGAATCACCACCTAA AAAATCAGATAAGTAGAATTAGAGAACAGGCAAATACAGTAGAAACAATAGTACTAATG- --------------GCAGTTCATTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATA TGACTCCATCAGAAAGACTAATCAATATGATCACCACAGAACAAGAGATACAATTCCTCC AAG---CCAAAAATTCAAAATTA---AAAAATTTTCGGGTCTATTTC---------AGAG AAGGCAGAGATCA-----GTTGTGGAAAGGACCTGGGGAACTACTGTGGAAGGGAGACGG AG-CAGTCATAGTCAAG------GTAGGAACAGATATAAAAATAATACCAAGGAGGAAAG CCAAGATCATCAGA------GACTATGGAG---------------------GAAGGCAAG AGCT-----------GGATAGCAGTTCCCACCTGGAGGGTGCCAGGGAGAATGGAGAAGT GGCATAG------------------------------------------------ [44] SIVmac_Rhesus_Macaque -----------------------GTGTTGGAATTGTGGGAAAGAAGGACACTCTGCAAGG CAATGCAGAGCCCCAAGAAGACAGGGATGCTGGAAATGTGGAAAAATGGACCATGTTATG GCCAAATGCCCAGACAGACAGGCGGGTTTTTTAGGCCTTG--------------GTCCAT GGGG-------------AAAGAAGCC----------CCGCAATTTCCCCA---------- -----------------------------------------TGGCTCAA-GTGCAT-CAG GGGCTGACGCCAACTGCTCCCCCAG----------------------------------- -------------------------------------------AGGACCCAGCTGTGGAT CTGCTAAAGAACTACATGCAGCTGGGCAAGCAGCAGA---GAGAAAAGCAGAGAG----- ------AAAGCAGAGAGAAGCCTTACAAGGAGGTG------------------------- --------------------------ACAGAGGATTTGCTGCAC--CTCAA--------- ---------TTCTCTCTTTGGAGGAGACCAGTAGTCACTGCTCATATTGAAGGACAGCCT GTAGAAGTATTACTAGATACAGGGGCTGATGATTCTATTGTAA------CAGGAATAGAG TT----------A---GGTCTACATTATACCCCAAAAATAGTAGGAGGAATAGGAGGTTT TATTAATACT-AAAGAATACAAAAATGTAGAAATAGAAGT---------------TTTAG GCAAAAGGATTAAAGGGACAATCATGACA---GGGGACACCC------------------ ------CGATTAACATTTTTGGTAGAAATTTACTAACAGCTCTGGGGATGTCTTTAAA-- ----CCTTCCCA------TAGCTA---AAGTAGAGCCTGTAAAAGTCGCCTTAAAGCCAG GAAAGGATGGACCAAAATTGAAGCAGT-GGCCATTATCAAAAGAAAAGATAGTTGCATTA AGAGAAATCTGTGAAAAGATGGAAAAGGATGGTCAGTTGGAGGAAGCTCCCCCGACCAAT CCATACAACACCCCCACATTTGCTATAAAGAAAAAAGATAAGAACAAATGGAGAATGCTG ATAGATTTTAGGGAACTAAATAGGGTCACTCAGGACTTTACAGAAGTCCAATTAGGAATA CCACACCCTGCAGGACTAGCAAAAAGGAAAAGGATTACAGTACTGGATATAGGTGATGCA TATTTCTCCATACCTCTAGATGAAGAATTTAGGCAGTACACTGCCTTTACTTTACCATCA GTAAATAATGCAGAGCCAGGAAAGCGATACATTTATAAGGTTCTGCCTCAGGGATGGAAA GGGTCACCAGCCATCTTCCAATACACTATGAGACATGTGCTAGAACCCTTCAGGAAGGCA AATCCA---GATGTGACCTTAGTCCAGTATATGGATGACATCTTAATAGCTAGTGACAGG ACAGACCTGGAACATGACAGGGTAGTTTTACAGTTAAAGGAACTCTTGAATAGCATAGGG TTTTCTACCCCAGAAGAAAAATTCCAAAA---------AGATCCCCCATTTCAATGGATG GGGTACGAATTGTGGCCAACAAAATGGAAGTTGCAAAAGATAGAGTTG------CCACAA AG------AGAGACCTGGACAGTGAATGATATACAGAAGTTAGTAGGAGTATTAAATTGG GCAGCTCAAATTTATCCAGGTATAAAAAC---------CAAACATCTCTGTAGGTTAATT AGAGGAAAAATGACTTTAACAGAGGAAGTTCAGTGGACTGAGATGGCAGAAGCAGAATAT GAGGAAAATAAAATAATTCTCAGTCAGGAACAAGAAGGATGTTATTACCAAGAGGGCAAG CCATTAGAAGCCACGGTAATAAAGAGTCAGGACAATCAGTGGTCTTATAAAATTCACCAA GAAGACA------------AAA------TACTGAAAGTAGGAAAGTTTGCAAAGATAAAG AATACACATACCAATGGAGTTAGACTATTAGCACATGTAATACAGAAAATAGGAAAGGAA GCAATAGTGATCTGGGGACAGGTTCC-----------------AAAATTCCACTTACCAG --------------TTGAGAAGGATGTATGGGAACAGTGGTGGACAGACTATTGGCAGGT AA------CCTGGATACCAGAATGGGATTTTATCTCAACACCACCACTAGT--------A AGATTAGTCTTCAATCTAGT------------------GAAGGACCCTATAAA------G GGAGAAGAAACCTATTATACAGATGGATCATGTAATAAACAGTCAAAAGAAGGGAAAGCA GGATATATCACAGATAGGGGCAAAGACAAAGTAAAAGTGTTAGAACAGACTACTAATCAA CAAGCAGAATTGGAAGCATTTCTCATGGCATTGACAG---ACTCAGGGCCAAAGGCAAAT ATTATAGTAGATTCACAATATGT------------------TATGGGAATAATAACAGGA TGCCCTACA-------GAATCAGAGAGCAGGCTAGTTAACCAAATAATAGAAGAAATGAT TAAAAAGTCAGAAATTTATGTAGCATGGGTACCAGCACACAAAGGT---ATAGGAGGAAA CCAAGAAATAGACCACCTAGT--------------------TAGTCAA------------ ------------------------------------------------------------ -------------------------------------------GGGATTAGAC------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------AAGT----------- -----------TCTCTTCTTGGAAAAGATAGAGCCAGCACAA-GAGGAACATGA-TAAGT ACCATAGTAATGTAAAAGAATTGGTATTCAAATTTGGATTACCCAGAATAGTGGCCAGAC AGATAGTAGACACATGTGATAAATGTCATCAAA------------AAGGAGAA------G CTATACATGGGCAGGTAAATTCAGATCTA------------GGGACTTGGCAAATGGATT GTACCCATCTAGAGGGA------------AAAATAATCATAGTTGCAGTACATGTAGCTA GTGGATTCATAGAAGCAGAAGTAATTCCACAAGAGACAGGAAGACAG---ACAGCACTAT TTCTGTTAAAATTGGCAGGCA---GATGGCCTGTTACACATCTACACACAGATAATGGTG CTAACTTTGCCTCGCAAGAAGTAAAGATGGTTGCATGGTGGGCAGGGATAGAGCACACCT TTGGGGTACCATACAATCCACAGAGTCAGGGAGTAGTGGAAGCAATGAATCACCACCTGA AAAATCAAATAGATAGAATCAGGGAACAAGCAAATTCAGTAGAAACCATAGTATTAATG- --------------GCAGTTCATTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATA TGACTCCAGCAGAAAGATTAATTAACATGATCACTACAGAACAAGAAATACAATTTCAAC AAT---CAAAAAACTCAAAATTT---AAAAATTTTCGGGTCTATTAC---------AGAG AAGGCAGAGATCA-----ACTGTGGAAGGGACCCGGTGAGCTATTGTGGAAAGGGGAAGG AG-CAGTCATCTTAAAG------GTAGGGACAGACATTAAGGTAGTACCCAGAAGAAAGG CTAAAATTATCAAA------GATTATGGAG---------------------GAGGGAAAG AGGT-----------GGATAGCAGTTCCCACATGGAGGATACCGGAGAGGCTAGAGAGGT GGCATAG------------------------------------------------ [45] SIVnme_Pig_Tailed_Macaque -----------------------GTGTTGGAATTGTGGGAAAGAGGGACACTCTGCAAGG CAATGCAGAACCCCAAGAAGACAGGGCTGCTGGAAATGTGGACAAATGGGCCATGTTATG GCCAAATGCCCAGACAGACAGGCAGGTTTTTTAGGCTTTG--------------GCCCAT GGGG-------------AAAGAAGCC----------CCGCAATTTCCCCA---------- -----------------------------------------TGGCCCAA-ATGCAT-CAG GGGCTGACGCCAACTGCTCCCCCAG----------------------------------- -------------------------------------------AGGACCCAGCTGTGGAT CTGCTAAAAAACTACATGCAGTTGGGCAAAC---------------AGCAGAGAG----- ------AAAGCAAAAGGAAGCCTTACAAGGAGGTG------------------------- --------------------------ACAGAGGATTTGCTGCAC--CTCAA--------- ---------TTCTCTCTTTGGAGAAGACCAGTAGTCACTGCTCATATTGAGGGACAGCCT GCAGAAGTATTATTAGATACAGGGGCTGATGATTCTATTGTAG------CAGGAATAGAG TT----------A---GGTCCACATTATACCCCAAAAATAGTAGGAGGAATAGGAGGTTT TATTAATACT-AAAGAATACAAAAATGTAAAAATAGAAGT---------------TTTAG GCAAAAGGATTAAAGGGACAATCATGACA---GGGGACACCC------------------ ------CGATTAACATTTTTGGTAGAAATTTGCTAACAGCTCTGGAGATGTCTCTAAA-- ----TTTCCCCA------TAGCTA---AGGTAGAGCCTGTAAAAGTCACCTTAAAGCCAG GAAAAGATGGACCAAAATTGAGGCAGT-GGCCATTATCAAAAGAAAAGATAGTTGCATTA AGAGAAATCTGTGAAAAGATGGAAAAGGATGGTCAGTTGGAGGAAGCTCCCCCGACCAAT CCATACAACACCCCCACATTTGCCATAAAGAAAAAGGACAAGAACAAATGGAGAATACTG ATAGATTTTAGGGAACTAAATAAGGTCACTCAGGACTTTACAGAAGTCCAATTGGGAATA CCACACCCTGCAGGACTAGCAAAAAGGAAGAGGATCACAGTACTGGATGTAGGTGACGCA TATTTCTCCATACCTCTAGATGAAGAATTTAGGCAGTACACTGCTTTTACTTTACCATCA GTAAATAATGCAGAACCAGGAAAACGATACATTTATAAGGTTCTGCCTCAGGGGTGGAAG GGGTCACCAGCCATCTTCCAACACACTATGAGAAATGTGCTGGAACCCTTCAGGAAGGCA AATCCA---GATGTGACCTTAGTCCAGTATATGGATGACATCTTAGTAGCTAGTGACAGG ACAGACCTGGAACATGACAGGGTAGTTTTACAGTTAAAGGAACTCTTAAATAGCATAGGG TTTTCTACCCCAGAAGAGAAGTTCCAAAA---------AGATCCCCCATTTCAATGGATG GGGTATGAATTGTGGCCAACAAAATGGAAGTTGCAAAAGATAGAGTTG------CCACAA AA------AGAGACCTGGACAGTGAATGATATACAGAAGTTAGTAGGAGTATTAAATTGG GCAGCTCAAATTTATCCAGGTATAAAAAC---------CAAACATCTCTGTAGGTTAATT AGAGGAAAAATGACTCTAACAGAGGAAGTTCAGTGGACTGAGATGGCAGAGGCAGAATAT GAGGAAAATAAAATAATTCTCAGTCAGGAACAAGAAGGATGTTATTACCAAGAAGGCAAG CCATTAGAGGCCACGGTAATAAAGAATCAGGACAATCAGTGGTCTTATAAGATTCACCAA GAAGACA------------AAA------TACTAAAAGTAGGAAAATTTGCAAAGATAAAA AATACACATACCAATGGAGTTAGACTATTAGCACATGTAATACAGAAAATAGGAAAGGAA GCAATAGTGATCTGGGGACAGGTCCC-----------------AAAATTCCACTTACCAG --------------TTGAGAAAGATGTATGGGAACAGTGGTGGACAGACTATTGGCAGGT AA------CCTGGATACCGAAATGGGATTTTATCTCAACACCACCACTAGT--------A AGATTAGTCTTCAATCTGGT------------------AAAGGACCCTATAAA------G GGAGAAGAAACCTATTATGTAGATGGATCATGTAATAAACAGTCAAAAGAAGGGAAAGCA GGATATATCACAGATAGGGGCAAAGACAAAGTAAAAGTCTTAGAACAGACTACTAATCAA CAAGCAGAATTGGAAGCATTTCTCATGGCATTGGCAG---ACTCAGGGCCAAAGGCAAAT ATTATAGTAGATTCACAATATGT------------------TATGGGAATAATAACAGGA TGCCCTACA-------GAATCAGAGAGCAGGCTAGTTAACCAAATAATAGAAGAAATGAT TAAAAAGACAGAAATTTATGTAGCATGGGTGCCAGCACACAAAGGT---ATAGGAGGAAA CCAAGAAATAGACCACCTAGT--------------------TAGTCAA------------ ------------------------------------------------------------ -------------------------------------------GGGATTAGAC------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------AAGT----------- -----------TCTCTTCTTGGAAAAGATAGAGCCAGCACAA-GAAGAACATGA-TAAAT ACCATAGTAATGTAAAAGAATTGGTATTCAAATTTGGATTACCCAGACTAGTGGCCAAAC AGATAGTAGACACATGTGATAAATGTCATCAGA------------AAGGAGAA------G CTATACATGGGCAGGTAAATTCAGATCTA------------GGGACTTGGCAAATGGATT GTACCCATCTAGAGGGA------------AAAATAATCATAGTTGCAGTACATGTAGCTA GTGGATTCATAGAAGCAGAAGTAATTCCACAAGAGACAGGAAGACAG---ACAGCACTAT TTCTGTTAAAATTGGCAAGCA---GATGGCCTATTACGCATCTACACACAGATAATGGTG CCAACTTTGCTTCGCAAGAAGTAAAGATGGTTGCATGGTGGGCAGGGATAGAGCACACCT TTGGGGTACCATACAATCCACAGAGTCAGGGAGTAGTGGAAGCAATGAATCACCATCTAA AAAATCAAATAGATAGAATCAGGGAACAAGCAAATTCAATGGAAACCATAGTATTAATG- --------------GCAGTTCATTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATA TGACTCCAGCAGAAAGATTACTTAACATGATCACTACAGAACAAGAAATACAATTCCAAC AAT---CAAAAAACTCAAAATTT---AAAAATTTTCGGGTCTATTAC---------AGAG AAGGCAGAGATCA-----GCTGTGGAAAGGACCTGGTGAGCTATTGTGGAAAGGGGAAGG AG-CAGTCGTCTTAAAG------GTAGGGACAGACATTAAGGTAGTACCCAGAAGAAAGG CTAAGATTATCAAA------GATTATGGAG---------------------GAGGAAAAG AGGT-----------GGATAGCAGTTCCCACATGGAGGATACCGGAGAGGCTAGAGAGGT GGCATAG------------------------------------------------ [46] SIVsmm_Sooty_Mangabey ------------------------------------------------------------ ------------------------------------------------------------ -----ATGCCCCGAAAGACAGGCGGGTTTTTTAGGGCTTG--------------GCCCAT GGGG-------------AAAGAAGCC----------CCGCAATTTCCCCA---------- -----------------------------------------TGGCCCAG-ATGCCT-CAG GGGCTGACACCAACTGCTCCYCCAG----------------------------------- -------------------------------------------AGGATCCAGCTGTGGAT CTACTGAAGAATTACATGAAGGTGGGCAGAA---------------GGCAGAGGG----- ------AGAACAGAGAGAGACCTTACAAGGAGGTA------------------------- --------------------------ACGGAGGATTTGCTGCAC--CTCAA--------- ---------TTCTCTCTTTGGAGAAGACCAGTAGTCACTGCCTACATTGAAGAACAGCCC ATAGAAGTATTATTAGATACAGGGGCTGATGATTCAATTGTAG------CAGGGATAGAA TT----------G---GGTCCAAATTATACCCCTAAAATAGTAGGAGGAATAGGAGGCTT CATTAACACC-AAAGAATATAAAGATGTAAAAATAAAAGT---------------ATTAG GCAAAGTAATTAAGGGAACAATTATGACA---GGAGATACCC------------------ ------CAATTAACATTTTTGGCAGAAATCTGCTAACAGCTATGGGCATGTCTCTAAA-- ----TCTCCCCA------TAGCTA---AGGTGGARCCTATAAAAGTAACACTAAAACCAG GAAAAGATGGACCAAAATTAAGACAGT-GGCCGCTATCGAAAGAAAAGATAATTGCATTA AGAGAAATCTGTGAAAAAATGGAGAAAGATGGCCAGTTAGAGGRAGCTCCTCCAACCAAT CCATATAACACCCCCACATTTGCTATAAAGRAGRAAGACGGAAATAAATGGAGGATGCTA ATAGATTTTAGAGAATTAAACAAGGTCACTCAAGATTTTACAGAAGTACAGTTAGGGATA CCACACCCTRCAGGACTAGCAAAGAGAAGAAGGATCACAGTGTTGGATGTAGGTGATGCA TATTTCTCCATACCTTTAGATGAAGAATTCAGGCAATACACTGCCTTTACCTTACCATCG GTAAACAATGCAGAACCAGGAAAAAGATACATCTATAAGGTATTACCTCAAGGGTGGAAA GGATCACCAGCTATTTTTCARCATACTRTGAGAAATGTATTAGAACCTTTTAGAAAAGCA AATCCA---GATGTGACCCTGATCCAATACATGGATGACATCTTAATAGCTAGTGATAGA ACAGATTTAGAACATGACAGGGTAGTTTTACAATTAAAGGAACTTCTGAACAGTATAGGA TTTTCCACCCCAGAAGAGAAGTTCCAAAA---------AGATCCCCCATTCCAGTGGATG GGATATGAATTGTGGCCCACCAAATGGAAACTGCAAAAAATAGAGTTG------CCGCAA AG------AGAAACCTGGACAGTAAATAATATACAAAAATTAGTAGGAGTGCTAAATTGG GCAGCACAAATTTATCCAGGAATAAAGAC---------TAAACATCTTTGCAGATTAATC AGAGGAAAAATGACTTTAACAGAAGAGGTTCAGTGGACTGAGATGGCAGAGGCAGAATAT GAAGAAAACAAGATAATTCCCAGTCAAGAACCAGAGGGATGTTACTATCAGGAGGGAAAG CCACTAGAGGCACCAGTAATAAAGAGTCAGGATAATCAATGGTCATATAAAATTCACCAA GAGGACA------------AAA------TACTAAAAGTAGGCAAATTTGCAAAGATTAAA AATACACATACAAATGGAGTCAGCTTATTAGCACATGTAGTGCAGAAAATAGGAAAAGAA GCAATAATAATTTGGGGACAGGTGCC-----------------AAGATTTCATTTGCCAG --------------TAGAGARAGAAATTTGGGAACAATGGTGGACAGATTATTGGCAAGT AA------CCTGGATACCAGAATGGGACTTTGTGTCAACACCTCCCTTAGT--------C AGACTAGTTTTCAACCTAGT------------------AAAAGAGCCTATACA------G GGAGCAGAAACATTTTATGTAGATAGATCCTGTAATAGGCAGTCAAGAGAAGGAAAAGCA GGCTATGTGACAGATAGAGGCAGAGGCAAGACAAAACTGCTGGAACAGACTACCAATCAA CAAGCAGAGTTGGAAGCCTTTTATCTAGCCTTAGCAG---ATTCAGGACCAAAAGCAAAT ATTATAGTAGATTCCCAATATGT------------------TATGGGCATAGTAGCAGGT CAACCCACT-------GAATCAGAAAGTAGATTAGTAAACCAGATAATAGAGAAAATGAT TAAAAAGGAAGCAATTTATGTAGCATGGGTACCTGCACATAAARRA---ATAGGAGAAAA TCAAGAAGTAGATCATCTAGT--------------------TAGTCAA------------ ------------------------------------------------------------ -------------------------------------------GAAATTAGAC------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------AAGT----------- -----------CCTATTCTTAGAAAAAATAGAACCAGCGCAG-GAAGAGCATGA-AAAAT ACCATAGCAATGTAAAAAAATTGGTATTCAAATTTRGTTTACCTAGGCTAGTAGCAAAAC AAATAGTAGACACATGTGATAAATGCCACCTGA------------AAGGAGAA------G CYATACATGGGCAAGTAAATGCRGRACTA------------GGGACTTGGCAAATGGACT GTACACACCTAGAGGGC------------AAAATAATTATAGTTGCAGTACATGTGGGTA GTGGATTCATAGAGGCAGAAGTAATCCCGCRGGAAACAGGAAGACAA---ACAGCACTGT TTCTGCTAAAATTAGCCAGCA---GATGGCCCATCACACATCTGCATACTGATAATGGTG CCAATTTCACATCACAAGAAGTGAAAATGGTTGCTTGGTGGGCAGGRATTGAACAGACCT TTRGGGTACCTTATAATCCACAGAGCCAARGGGTAGTGGAAGCGATGAACCATCATCTAA AAACCCAAATAGATAGAATTAGAGAACAGGCAAATTCAATAGAAACTATAGTACTAATG- --------------GCAATTCATTGCATCAATTTTAAAAGAAGGGGAGGAATAGGGGATA TGACTCCAGCAGAAAGATTAGTCAATATGATTACCACAGAACAAGAAATACAATTCCAAC AAT---CAAAAAATTCAAAATTT---AAAAATTTTCGGGTCTATTAC---------AGAG AAGGCAGAGACCA-----GCTGTGGAAAGGACCCGGTGAGCTATTGTGGAAAGGGGAAGG AG-CAGTCATCCTAAAG------GTAGGGACAGAGATCAAGGTAGTACCAAGGAGGAAAG CTAAAATTATCAAA------GACTATGGAG---------------------GAGGAAAAG AATT-----------GGATAGTGGTTCCCACTTGGAGGATACCGGGGAGGCTAGAGAAGT GGCATAG------------------------------------------------ [47] SIVstm_Stump_Tailed_Macaque ------------------------------------------------------------ --------AGGCCCGAGAAGACAAGGTTGTTGGAAATGTGGACAACAGGGCCATCAGATG GCCAAATGCCCAGAAAGACAGGTGGGTTTTTTAGGCTTTG--------------GCCCAT GGGG-------------AAAGAAGCC----------CCACAACTTCCCCA---------- -----------------------------------------TGGCCCAA-ATACCT-CAG GGGCTGACGCCAACTGCCCCTCCAG----------------------------------- -------------------------------------------AAGACCCAGCTGCGGAT CTGCTGAGAAGTTACATGCAGCTGGGCAAGA---------------AGCAGAGAG----- ------AGAGCAGGAAGACACCCTACAAGGAGGTG------------------------- --------------------------ACAGAGGATTTGCTGCAC--CTCAA--------- ---------TTCTCTCTTTGGAGAAGACCAGTAGTCACAGCCCATATTGAGGGTCAGCCT GTAGAAGTACTATTGGACACAGGGGCTGACGACTCAATAGTGG------CGGGGATAGAG CT----------A---GGGCTACAATACACCCCAAAGGTAGTAGGTGGAATAGGAGGATT TATAAATACT-AAGGAATTTAAGAATGTAAACATAGAGGT---------------ATTAG GCAAGAAAATAAAAGGAACTATTATGACT---GGAGACACCC------------------ ------CCATTAACATTTTTGGCAGGAACCTATTGACAGCTTTGGGGATGTCATTAAA-- ----TTTTCCAG------TAGCTA---AAGTAGAACCAGTAAAGGTGACATTAAAACCAG GAAAAGATGGACCAAAAATAAAACAAT-GGCCATTATCAAAAGAAAAGATAGAGGCACTA AAAGAGATCTGTGAAAAAATGGAGAAGGATGGGCAGCTAGAAGAAGCTCCTCCAACAAAT CCTTACAATACCCCCACTTTTGCTATAAAGAAAAAGGACAAAAACAAGTGGAGGATGCTG ATAGATTTCAGAGAACTAAATAAAGTGACACAAGATTTTACAGAAATTCAGCTAGGTATA CCACACCCTGCAGGACTAGCAAAGAGGAGAAGAATCACAGTATTGGATGTAGGGGATGCA TATTTTTCCATACCCCTAGATGAGGGCTTTAGGCAGTATACTGCTTTCACCTTACCATCA GTAAACAATGCAGAACCAGGAAAAAGATACATCTACAAGGTTCTGCCACAGGGATGGAAG GGATCACCAGCAATTTTTCAATATACAATGAGAAATATATTAGAGCCATTCAGGAGAGCC AACCCA---GATGTAACTCTGATCCAATACATGGATGATATCTTGATAGCCAGTGACAGA ACAGATCTAGAGCATGACAGGGTAGTTTTACAGTTGAAGGAACTCCTAAATAATTTAGGA TTTTCCACCCCTGAAGAGAAATTTCAGAA---------GGATCCTCCATTTCAATGGATG GGATATGAGTTATGGCCAACAAAGTGGAAACTGCAAAAAATAGAATTA------CCTCAG AG------AGACGTTTGGACAGTGAATGATATCCAAAAACTGGTAGGGGTCTTAAACTGG GCAGCACAAATTTATCCAGGAATTAAAAC---------TAAACATCTGTGCAAATTAATC AGAGGTAAGATGGCACTGACTGAGGAGGTACAGTGGACAGAAATGGCAGAGGCAGAATAT GCAGAAAATAAAATTATTCTCAGTCAGGAGCAGGAAGGGCAATACTACCGAGAAGACAAG CCTCTAGAGGCAACAGTAGTGAAAGATCAGGACAATCAATGGTCCTATAAGATACACCAA GAAGACA------------AAA------TATTGAAAGTAGGCAAGTTTGCAAAAATAAAA AACACACATACAAATGGAGTTAGATTATTGGCACATGTGATTCAGAAGATAGGGAAAGAA GCAATAGTGATCTGGGGACAGATCCC-----------------AAAATTCCACTTGCCAG --------------TAGAGAGAGAGGTCTGGGAACAATGGTGGGCAGATTATTGGCAGGT AA------CATGGATACCAGAATGGGATTTTGTATCCACACCTCCTTTAGT--------A AGATTAGTCTTTAATTTAGT------------------AAAAGAACCCTTGGA------A GGAACAGAAACATTTTATGTGGATGGCTCATGTAACAGGCAATCTAAAGAAGGGAAAGCA GGCTACATAACTGATAGAGGAAAAAACAAAGTAAAAGCTTTAGAACAGACTACTAATCAA CAAGCAGAATTAGAAGCATTTGCCATGGCCTTGGCGG---ACTCAGGTCCAAAAGCAAAT ATTGTGGTAGACTCACAATATGT------------------GATGGGAATCATAACAGGA CAGCCCACA-------GAATCGGAGAGCAAGTTAGTAAATCAGATAATAGAAGAAATGAT TAAAAAGGAAGCAATTTATGTAGCATGGGTACCAGCACATAAAGGA---ATAGGAGGAAA TCAGGAGGTAGATCATTTGGT--------------------AAGTCAG------------ ------------------------------------------------------------ -------------------------------------------GGAATTAGAC------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------AGGT----------- -----------CCTATTCCTAGAAAAAATAGAACCAGCTCAA-GAAGAGCATGA-AAAAT ATCATAGCAATGTGAAAGAGCTAGTCTTCAAGTTTGGCATACCAAGGCTAGTAGCAAAGC AAATAGTGGATACATGTGACAAGTGCCACCAGA------------AAGGAGAA------G CTATACATGGGCAAGTAAATGCAGAGTTA------------GGGACTTGGCAGATGGACT GTACACATCTAGAAGGC------------AAGATAATTATAGTAGCAGTACATGTAGCTA GTGGGTTTATAGAGGCAGAAGTAATCCCACAAGAAACAGGGAGACAG---ACAGCATTGT TTCTGTTGAAGTTAGCAAGCA---GATGGCCTGTCACACACCTGCACACGGATAATGGCG CTAACTTCACCTCGCAGGAGGTAAAGATGGTAGCCTGGTGGGCGGGAATAGAACAAACCT TTGGAGTACCTTACAATCCACAGAGCCAAGGAGTAGTGGAAGCCATGAATCATCATTTAA AGACCCAGATAGACAGAATTAGAGATCAAGCAAACACAGTAGAAACTGTAGTACTCATG- --------------GCAGTTCACTGCATGAATTTTAAGAAAAGGGGAGGACTAGGGGATA TGACCCCAGCAGAAAGATTAGTTAATATGATCACCACAGAACAAGAAATACAATTTCAAC AAT---CAAAAAATTCAAAATTC---AAAAATTTTCGGGTCTATTAC---------AGGG AAGGCAGAGATCA-----ACTATGGAAGGGACCCGGTGAGCTATTGTGGAAAGGGGAAGG AG-CAGTCATCGTAAAG------GTAGGGACAGACATTAAAGTAGTACCAAGGAGAAAGG CTAAAATCATCAAA------GATTATGGAG---------------------GAGGAAAAG AGGT-----------GGATAGTGGTTCCCACCTGGAGGATACCAGGGAGGCTGGAGAGGT GGCATAG------------------------------------------------ [48] HIV_2_Group_B ------------------------------------------------------------ --------------------------ATGCTGGAAATGTGGACAGCAAGGACACATCATG TCAAAATGCCCAGAAAGACAGGCGGGTTTTTTAGGGTTCG--------------GCCCCT GGGG-------------AAAGAAGCC----------TCGCAATTTCCCCGTCCAGGCACC CCAGGGGATAGTGCCATCTGCGCCCCCGATGAACCCAGCATTCGGCATG-ACACCT-CAG GGTGCGATTCCATCTGCACCCCCTG----------------------------------- -------------------------------------------CAGATCCAGCAGAGGAG ATGCTAAAGAACTACATGCAACTAGGGAAGA---------------AGCAGAAGG----- ------AGAACAGAGAGAGACCCTACAAGGAGGTG------------------------- --------------------------ACAGAGGATTTGCTGCAC--CTCAA--------- ---------TTCTCTCTTTGGAGAAGACCAGTAGTCAAAGCAACTATTGAGGGTCAATCA GTAGAAGTATTACTAGACACAGGAGCTGATGACTCAATAGTAG------CAGGGATAGAA TT----------A---GGCAGCAATTACACCCCAAAAATAGTAGGTGGGATAGGAGGATT TATAAATACC-AATGAATACAAAAATGTAGAAATAGAAGT---------------AGTAG GAAAAAGAGTAAGAGCAACAGTAATGACA---GGGGACACCC------------------ ------CAATAAACATTTTTGGCAGAAATATTTTAAATAGCTTAGGCATGACTCTAAA-- ----TTTCCCAG------TAGCAA---GGATAGAACCAGTAAAAGTCCAGTTAAAGCCTG AAAAAGATGGGCCAAAAATCAGACAAT-GGCCCCTATCCAAAGAGAAAATACTAGCCCTC AAAGAAATCTGTGAAAAAATGGAAAAAGAGGGACAGTTAGAAGAGGCGCCTCCTACTAAT CCATACAATTCGCCCACCTTCGCCATAAAAAAGAAAGACAAAAACAAATGGAGGATGCTA ATAGATTTCAGAGAACTAAACAAGGTAACCCAAGAATTTACAGAGGTCCAGCTGGGTATT CCTCACCCAGCAGGACTGGCATCAAAGAAAAGAATAACAGTACTAGATGTAGGAGATGCC TACTTCAGTGTCCCACTAGATCCAGACTTCAGACAATATACAGCATTTACTTTGCCAGCA GTAAATAATGCAGAACCAGGAAAGAGATATCTTTACAAAGTCCTACCACAGGGATGGAAG GGATCCCCAGCAATTTTCCAGTACACCATGGCAAAGGTACTAGACCCTTTCAGAAAAGCC AACAAT---GATGTCACTATAATCCAGTACATGGATGACATTCTCGTGGCAAGTGACAGG AGCGATCTGGAGCATGACAGGGTAGTGTCTCAACTAAAAGAGCTATTAAATAACATGGGA TTCTCTACTCCAGAAGAAAAGTTCCAAAA---------AGACCCTCCATTCAAATGGATG GGGTATGAGCTCTGGCCAAAGAAATGGAAACTGCAAAAAATACAGCTA------CCAGAA AA------AGAGGTTTGGACAGTAAATGACATTCAGAAGTTAGTGGGAGTATTAAATTGG GCAGCTCAACTTTTCCCGGGGATTAAGAC---------CAGGCATATATGTAAACTAATA AGGGGAAAGATGACCCTAACAGAAGAGGTACAATGGACTGAATTGGCAGAGGCAGAATTC CAGGAAAACAAAATCATCCTAGAACAAGAGCAGGAAGGATCCTATTACAAAGAAGGGGTA CCTTTAGAAGCAACAGTGCAGAAAAATCTAGCAAATCAGTGGACATACAAGATTCATCAG GGAGATA------------AAA------TCCTAAAAGTAGGAAAATATGCAAAGGTTAAA AACACTCACACCAATGGAGTAAGACTATTGGCTCATGTAGTCCAAAAAATAGGAAAGGAA GCATTGGTCATCTGGGGAGAGATACC-----------------AATGTTCCATCTACCAG --------------TAGAAAGAGAGACATGGGATCAGTGGTGGACAGATTACTGGCAAGT AA------CCTGGATCCCAGAATGGGATTTTGTCTCAACCCCACCATTAAT--------A AGGTTAGCCTATAACCTGGT------------------CAAAGACCCCCTAGA------A GGAGTAGAAACTTACTACACAGATGGATCCTGTAACAAAGCCTCAAAAGAAGGGAAAGCA GGATATGTCACAGACAGGGGAAAGGATAAAGTTAAACCATTAGAACAAACAACAAATCAG CAAGCAGAGCTTGAAGCATTTGCACTAGCACTACAGG---ACTCAGGACCACAGGTCAAT ATCATAGTAGATTCACAATATGT------------------CATGGGAATAGTAGCTGCA CAACCAACA-------GAAACAGAATCACCGATAGTAAGAGAAATAATTGAAGAAATGAT CAAAAAGGAAAAAATATATGTAGGATGGGTACCAGCTCACAAGGGA---CTGGGTGGTAA TCAGGAAGTAGACCACCTAGT--------------------GAGCCAA------------ ------------------------------------------------------------ -------------------------------------------GGAATTAGAC------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------AAAT----------- -----------CCTATTTCTAGAAAAAATAGAACCAGCTCAA-GAAGAACATGA-AAAAT ATCATAATAATGTAAAAGAACTAGTCCATAAATTTGGGATTCCACAATTAGTGGCAAGAC AAATAGTAAATTCCTGTGATAAATGCCAACAAA------------AAGGGGAA------G CTATTCATGGACAGGTAAATTCAGAACTA------------GGGACATGGCAAATGGACT GTACACATTTAGAGGGA------------AAGGTTATAATAGTGGCAGTTCATGTAGCCA GTGGATTCATAGAAGCAGAAGTAATACCCCAAGAAACAGGAAGACAG---ACAGCTCTCT TCCTGTTAAAGCTGGCCAGCA---GATGGCCTATCACACACCTGCACACAGACAACGGTG CCAACTTCACTTCACAAGATGTGAAAATGGCAGCCTGGTGGATAGGGATAGAACAAACAT TCGGAGTGCCCTATAATCCAGAAAGTCAGGGAGTAGTAGAAGCAATGAACCATCATCTGA AAAATCAGATAGACAGAATTAGAGATCAGGCAGTATCAATAGAGACAGTTGTGTTAATG- --------------GCAACTCACTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATA TGACCCCTGCAGAAAGAATAGTCAACATGATAACTACAGAACAAGAAATACAATTCCTCC AAA---CAAAAAATTTAAAATTC---CAAAATTTCCGGGTCTATTAC---------AGAG AAGGCAGAGATCA-----ACTCTGGAAGGGACCTGGTGATCTATTGTGGAAAGGGGAAGG AG-CAGTCATCATAAAG------GTAGGGACAGAAATCAAAGTAATACCCAGAAGAAAAG CAAAGATCATAAGG------AACTATGGAG---------------------GAGGAAAAG AATT-----------GGATTGCAGTGCCGACGTGGAGGATACCATGCAGGCTAGAGAGGT GGCACAG---------------------TCTAATTAA------------------ [49] SIVagmTan_African_Green_Monkey_Tantalus GGCAGAGGCAGAGGCCCACCCCGCTGCTTCAAATGTGGACAAATTGGGCATATACAAAAA GATTGTCCAAGAGCAGGACCAAACAAATGCCTAAAATGTGGGAAGCCAGGACACTTAGCA AAAGATTGCCGCAGTGGACAGGCCAATTTTTTAGGGAGAAT-----------GCCAACCT GGGG-------------AACAAAGCC----------GCGCAATTTTTTAGAGCAA----- ---------------------------------------------------------GGC GGAGCCGTTCCGACGGCTCCCCCGATGCCTGCGCACGGA--------------------- ------------TTCCCCACAGGTTCGCCAGCTGCGGGAGCATACGACCCAGCCAGGAAA CTGCTGGAGCAGTATGCCAAAAAGGGAGATC---------------AATTGAGAA----- ------------------------------------AGCAG------------------- -----------------AAGGAGAAGGAACTGGAGGACTATTCC--TTGAG--------- ---------TTCCCTCTTTGGAGGAGACCAATGAGTAAGATCTACATACAGGGCCAGCCA GTACAAGTTCTGTTAGATACAGGAGCTGATGATACCATAATAAAGGAAGAAGATATCCAT TT----------A---GAAGGACGCTGGCGGCCTAAAGTAGTAGGAGGTATAGGAGGGGG AATCTCAGTA-AAACAATATGACAATATTTTAGTGAATAT---------------AGATG GAAAAGAAACTAGAGGTAATGTACTAATT---GGACCAACAC------------------ ------CAATAAATATTGTAGGAAGAAATATTCTAGCACCTTTAGGAGCAAGATTAAT-- ----AATGGGACAGCTAAATGAGA---AAATACCCATAACCAAGGTACAATTGAAACCTG GGATGTCAGGACCGAAATTAAAACAAT-GGCCCCTATCAGAAGAAAAAATAAAAGCCCTG ACAGAAATAACTCAGGCTCTAGAAAAGGAAGGAAAAATTTCTAAGGTTGGAGGAGAGAAT CCTTACAATACTCCCGTGTTTTGTATCCGGAAAAAAGACAAAACACAGTGGAGGATGTTA ATAGATTTTAGAGCTCTCAATAAAGCAACACAGGACTTCTTTGAGGTACAATTAGGTATT CCCCATCCAGCAGGATTGAAAAGAAAGAAACAGATCACAGTACTAGATATAGGAGATGCC TATTATAGTATACCATTGGATCCAGAATTCAGGCCCTATACAGCTTTTACCATCCCACAA GTAAATAATGTAGGGCCTGGAATTAGGTATCAATTCAATTGTCTACCTCAAGGATGGAAA GGATCACCCACCATATTTCAGCACACAGCACAGCGAGTCCTAAAAGAAATAGGAAAAAAG GTTCAA---GATTTAGAAATAATTCAGTACATGGATGACATGTGGATAGGATCAGATTTG CCAGAGAAAGAACATGATGAAAAGGTAGAAGAGGTAAGAAAGCTTCTGCTATTAAGAGGC TTCGAGACGCCAGATAAGAAGGTGCAGAA---------AAGACCTCCATATGATTGGATG GGATACAAGTTGTACCCTTCTCACTGGAGTCTCAACAAAATAGAGATA------CCAGAG CA------AGAACACTGGACAGTGAATGATATTCAAAAATTAGTAGGAGTGTTAAATTGG GCTAGTCAATTATATCCAGGAATTAAGAC---------AAAAGCCCTATGCAAATTACTA CGAGGAGCTCAAGATTTAACAGCTGTAGTGCAATGGACGGAGCAGGCAGAGGTAGAGTTC AGACAAAATCAAGAGATCTTAAAAGAAGAGCAACAGGGAGCTTACTATGACCCAAGTAAA TCTTTGAGAGCCACTATTACCAAGCTGGATGATGGGCAATGGGGATATCAATTCAAACAG GAGGGAA------------AAG------TACTAAAAACAGGAAAATATACAAAGAGCAAA AATACTCATACAAATGAGTTTAGAGTATTGGCAGGAATGGTCCAAAGGGTGTGCAAGGAA GCGATCACCTTTTGGGGAAAATTACC-----------------CATCATGGAAGTACCAG --------------TAGAAAGAGAAGTATGGGAACAATGGTGGAGTGACTATTGGCAAGT CA------CATGGCTACCAGAGATAGAATTCATCTCCACACCGCCCTTAAT--------C AAATTATGGTATAACTTGGT------------------AAAAGATCCCATACC------A AAAGCAAAGGTGTATTATTGCGATGGGGCATGCAATAGAAATTCCAAATTAGGAAAGGCA GGCTTCCTAACTAACACAGGAGAATCACAGGTCATAGAATTAGAGGATACCACGAACCAA CAAGCAGAATTACAAGCAGTCCTTCTAGCATTAAAAC---ATAGTAAGAGCAAAGTTAAT ATAGTAACGGATTCACAGTATGT------------------CATGGGAATCCTGACAGCA CAACCTACA-------CAAAGTGACTCCGTGCTAGTAAATCAAATAATTGAAGAAATGAT TAATAAAGATGCTATCTATTTAACCTGGGTACCAGCACATAAAGGG---ATAGGGGGAAA TCAAGAAATAGATAAGCTAGT--------------------AAGCCAG------------ ------------------------------------------------------------ -------------------------------------------GGGATTAGGC------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------AAGT----------- -----------GCTATTCTTAGACAGAATGGAAGAAGCCCAG-GAATCACATGA-TAAAT ATCATACTAATTGGCAATTTATAAGAGATGCATTCGGTATACCAGCACTGGTAGCAAAAG AAATAGTAGCTGCTTGCCCAAAATGTCAAATTC------------GAGGAGAA------C CGATACATGGGCAAGTAGATGCCAGTGTA------------GGGGTCTGGCAAATGGACT GTACACATTTGGAAGGA------------AAAATCATTATAGTAGCAGTCCATGTGGCCA GTGGCTTCTTAGAAGCAGAAGTCATAGCTAGGGAAACAGGAAAAGAA---ACAGCAAAAT TCCTGTTAAAAATCATTAGTA---GGTGGCCTATTACAAAATTACATACTGACAATGGGC CAAATTTTGTTAGTCAGGAGGTACAAACTATTTGTTGGTGGGGACAAGTAGAGCACACAA CAGGGATCCCCTATAACCCACAATCACAAGGAAGTGTAGAAAGTATGAATAGACAATTAA AAGAAACTATAGAAAAAATTAGAGAAGACTGTGCATTTTTGGAAACGGCAGTCCTCATG- --------------GCCTGCCACATTCACAATTTTAAAAGAAAGGGAGGAATAGGGGGTA TGACCCCAGCAGAGAGGCTAATAAACATGATAACCACACAACTAGAAATACAACACATAC AAA---CACAACAACAAAAAATT---TCAAATTTTAAGGTCTACTAC---------AGAG AAGGAAGAGAGCC-----AGTGTGGAAAGGACCAGCCACTCTCCTCTGGAAGGGAGAAGG AG-CGGTAGTCATAAAA------GAAGGTGAGGAGTTGAAAGTAGTACCAAGGAGAAAGG CAAAAATTATCAAA------GAATATGGAG---------------------AGAGAAAAA CTGT-----------GGGTGACAAGACTAACATGGAGGGT-------------------- ----------------------------------TAG------------------ [50] SIVagmVer_White_Crowned_Mangabey --------------------------------TTGTGGAAAATTTGGCCATATGCAAAGA CAATGTCCGGAACCAAGGAAAACAAAATGTCTAAAGTGTGGAAAATTGGGACACCTAGCA AAAGACTGC---AGGGGACAGGTGAATTTTTTAGGGTATG--------------GACGGT GGATGGG----------GGCAAAACC----------GAGAAATTTTCCCG---------- -----------------------------------------CCGCTACT--------CTT GGAGCGGAACCGAGTGCGCCTCCTCCACCGAGCGGCA----------------------- ----------------------------------CCACCCCATACGACCCAGCAAAGAAG CTCCTGCAGCAATATGCAGAGAAAGGGAAAC---------------AACTGAGGG----- ---------------AGCAAAAGAGGAATCCACCGGCAATG------------------- -----------------AATCCGGATTGGACCGAGGGATATTCT--TTGAA--------- ---------CTCCCTCTTTGGAGAAGACCAATAAAGACAGTGTATATAGAAGGGGTCCCC ATTAAGGCACTGCTAGACACAGGGGCAGATGACACCATAATTAAAGAAAATGATTTACAA TT----------A---TCAGGTCCATGGAGACCCAAAATTATAGGGGGCATAGGAGGAGG CCTTAATGTA-AAAGAATATAACGACAGGGAAGTAAAAAT---------------AGAAG ATAAAATTTTGAGAGGAACAATATTGTTA---GGAGCAACTC------------------ ------CCATTAATATAATAGGTAGAAATTTGCTGGCCCCGGCAGTGCCCCGGTTAGT-- ----AATGGGACAATTATCAGAAA---AAATTCCTGTCACACCTGTCAAATTGAAGGAAG GGGCTCGGGGACCCTGTGTAAGACAAT-GGCCTCTCTCTAAAGAGAAGATTGAAGCTTTA CAGGAAATATGTTCCCAATTAGAGCAGGAAGGAAAAATCAGTAGAGTAGGAGGAGAAAAT GCATACAATACCCCAATATTTTGCATAAAGAAGAAGGACAAATCCCAGTGGAGGATGCTA GTAGACTTTAGAGAGTTAAATAAGGCAACCCAAGATTTCTTTGAAGTGCAATTAGGGATA CCCCACCCAGCAGGATTAAGAAAGATGAGACAGATAACAGTTTTAGATGTAGGAGACGCC TATTATTCCATACCATTGGATCCAAATTTTAGGAAATATACTGCTTTTACTATTCCTACA GTGAATAATCAGGGACCCGGGATTAGGTATCAATTCAACTGTCTCCCGCAAGGGTGGAAA GGATCTCCTACAATCTTCCAAAATACAGCAGCATCCATTTTGGAGGAGATAAAAAGAAAC TTGCCA---GCACTAACCATTGTACAATACATGGATGATTTATGGGTAGGTTCTCAAGAA AATGAACACACCCATGACAAATTAGTAGAACAGTTAAGAACAAAATTACAAGCCTGGGGC TTAGAAACCCCAGAAAAGAAGATGCAAAA---------AGAACCACCTTATGAGTGGATG GGATACAAACTTTGGCCTCACAAATGGGAACTAAGCAGAATACAACTG------GAGGAA AA------AGATGAATGGACTGTCAATGACATCCAGAAGTTAGTTGGGAAACTAAATTGG GCAGCACAATTGTATCCAGGTCTTAAGAC---------AAGAATATGCAAGTTAATTACA GGAGGAAAGAAAAATCTGTTAGAGCTAGTAGCTTGGACACCTGAGGCAGAAGCTGAATAT GCAGAAAATGCAGAGATTCTTAAAACAGAACAGGAAGGAACCTATTACAAACCAGGAATA CCTATTAGGGCAGCAGTACAGAAATTGGAAGGAGGACAGTGGAGTTACCAATTCAAACAA GAAGGAC------------AAG------TCTTGAAAGTAGGAAAATACACCAAGCAAAAG AACACCCATACAAATGAACTTCGCACATTAGCTGGTTTAGTGCAGAAGATTTGCAAAGAA GCTCTAGTTATTTGGGGGATATTACC-----------------AGTTCTAGAACTCCCGA --------------TAGAAAGAGAGGTATGGGAGCAATGGTGGGCGGATTACTGGCAGGT AA------GCTGGATTCCCGAATGGGATTTTGTCAGCACCCCACCTTTGCT--------C AAACTATGGTACACATTAAC------------------AAAAGAACCCATACC------C AAGGAGGACGTTTACTATGTA---GGAGCATGCAACAGAAATTCAAAAGAAGGAAAAGCA GGATACATCTCACAATACGGAAAACAGAGAGTAGAAACATTAGAAAACACTACCAATCAG CAAGCAAAATTAACAGCTATAAAAATGGCTTTGGAAG---ACAGTGGGCCTAATGTGAAC ATAGTAACAGACTCTCAATATGC------------------AATGGGAATTTTGACAGCA CAACCCACA-------CAAAGTGATTCACCATTAGTAGAGCAAATTATAGCCTTAATGAT ACAAAAGCAACAAATATATTTGCAGTGGGTACCAGCACATAAAGGA---ATAGGAGGAAA TGAGGAGATAGATAAATTAGT--------------------GAGTAAA------------ ------------------------------------------------------------ -------------------------------------------GGCATTAGAA------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------GAGT----------- -----------TTTATTCTTAGAAAAAATAGAAGAAGCTCAA-GAAAAGCATGA-AAGAT ATCATAATAATTGGAAAAACCTAGCAGATACATATGGGCTTCCACAAATAGTAGCAAAAG AGATAGTGGCCATGTGTCCAAAATGTCAAATAA------------AGGGAGAA------C CAGTGCATGGACAAGTGGATGCCTCACCT------------GGAACATGGCAGATGGATT GTACTCATCTAGAAAAA------------AAAGTAGTCATAGTTGCGGTCCATGTAGCCA GTGGATTCATAGAAGCAGAAGTCATACCTAGGGAAACAGGAAAAGAA---ACGGCAAAGT TTCTATTAAAAATACTGAGTA---GATGGCCTATAACACAGTTACACACAGACAATGGGC CTAACTTTACCTCCCAAGAAGTGGCAGCAATATGTTGGTGGGGAAAAATTGAACATACAA CAGGTATACCATATAACCCCCAATCTCAAGGATCAATAGAAAGCATGAACAAGCAATTAA AAGAGATAATTGGGAAAATAAGAGATGATTGCCAATATACAGAGGCAGCAGTACTGATG- --------------GCTTGCATACTTCACAATTTTAAAAGAAAGGGAGGAATAGGGGGAC AGACTTCAGCAGAGAGACTAATTAATATAATAACAACACAATTAGAAATACAACATTTAC AAA---CCAAAATTCAAAAAATT---TTAAATTTTAGAGTCTACTAC---------AGAG AAGGGAGAGACCC-----TGTGTGGAAAGGACCGGCACAATTAATCTGGAAAGGGGAAGG AG-CAGTGGTCCTCAAG------GACGGAAGTGACCTAAAGGTTGTACCAAGAAGGAAAG CTAAAATTATTAAG------GATTATGAAC---------------------CCAAACAAA GAGT-----------GGGTAATGAGGGTGACGTGGAAGGTACCAGGGGATCTGATAAC-- ----------------------------------TAA------------------ [51] SIVtal_Gabon_talapoin ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------------GTTCATGGAACAGATCCCAGAGGCCCAA-GAGGAGCATGA-GAGAT ATCATAACAATTGGAGGGATCTAAAAGCCAGGTTCAAATTACCCACCATAGTGGCAAAAG CTATTATAGAAAGTTGCCCCAAGTGTCAAGTTC------------ATGGGGAA------C CTAGGACAGGACAAACCAATGCAGATGTA------------GGGACATGGCAAATGGATT GCACCCACTTGGAAGGA------------CAGGTGATCTGTGTAGCAGTGCATGTAGCCA GTGGCTACATAGAGACAAAGATACTGCCCAGGGAGACGGGTCGGGAA---ACCGCCCTGT TTCTTTTACAGATAGCAGGCA---GATGGCCAATAAGTCACTTACACACAGATAATGGCC CCAACTTTGTCTCGCAGGAAATGGCCGCCATGGTATGGTGGCTAAAGATAGAGCACACAA CGGGGGTACCATATAACCCTCAGTCTCAGGGCAATGTAGAAAATAAAAATAAGCAATTGA AAAAGACCATTCAACAAATTAGGGATGAGGTGCAGTACCTAAGCTC-------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------- [52] SIVsyk_Sykes_Monkey ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------------------------------------AT GGGGGGTCTCCA----GGAGGCCCCC----------AGCCAACTTCCCAGTG-------- -----------------------------------------AGGAGCGAG---------- ---------CCATCTGCTCCCCCTCTGGAGGACATCGAAGATGGGCCATGGCTCACATGG T-------CAGC-----------------------ACAGATGAGCCAACAAGCACAAGCG AAGGCACAGAACTCTCCCTCGAAGAAACCCC----------CCACCAACAGGGAAGTGCT CTC----------------GCCGAAGGAGAGCAGTGGGAAG------------------- -----------------GAGGAGACCAAGAGTCTCTATCCCTCT--CTCAG--------- ---------CTCTCTCTTTGGAGAAGACCAATGATAGAAGTAGATGTAGAAGGTGACCTG GTGCAAATGTTAGTAGATACAGGGGCAGATGATACTATAATTAGAGAAGAAGATATTCAA TT----------A---CACCAACCATGGTCACCAAAAATAGTAGGAGGATTAGGAGGAAA CATTACAGTT-AGGCAATATAGAAATATTAGATTCACTGTTGTTAAACCCTCAGGAAAAA GAAAGCAAGTAGAGGGGACTCTTTTAGTG---GGTCCTACGC------------------ ------CAGTAAATATATTAGGAAGGAATATACTTACCAAATTGGGAGTCAAATTAGT-- ----AATGGTTC------AAACAG---CATTAGAGCCAGTCAAAGTAAGTCTGAAACCAG ACAAAGAATTGCCCCGGCTAAAACAAT-GGCCATTATCGGTAGAGAAATTAGAGGCCCTC AAGGCAATAGTAGAAGACATGCTCAAGGCAGGACAATTGGAGAAAGCTAGTCCTACCAAT CCTTATAATACCCCAGTATTTGTAATTAGGAAAAAGGACAAAAAGAAATGGAGGATGCTC ATTGATTTTAGAAAATTAAATGAGGCCACACAAGATTTTTTCGAGGTACAATTGGGAATA CCCCACCCAGGAGGACTAAAACGGCAAAAAC---TAACAATTATAGATTTAAAAGATGCA TATTACTCAGTCCCCCTGGACAAAGAGTTTAGGCCATACACGGCATTTACAGTGCCAAGC ATAAATAATGCCTCCCCGGGAGAAAGATATCAATTTACAGTGTTACCACAGGGATGGAAA GGATCTCCCACTATCTTCCAAAGCACAATAAATCAGATACTACAGCCATTTAGAAAGAAG TATTCA---GATCTCACTCTAATACAGTACATGGATGACTTATTGATTGGCACTGATAGA TCAGAGAAGGCACATCAGGAGATAGTACAACAAATAGTGACAGCACTATTAAAAGTGGGA TTTAAGGTCCCAAAAGAAAAATGGCAGGA---------CCAATATCCAATGCAGTGGTTA GGTTACACTCTTCATCCAGACAAGTGGCAGTTGCAGAAAATAGAACTC------CCTAAT ATAGA---TGACGAAATCACAGTGAATCAGTTACAGAAATTGATAGGAGTACTTAATTGG GCAAGCCAGATTTATTCAGGAATTAAGAC---------AAAAGAGCTCTGTAAGTGTATC AGAGGAACTAAACAATTAACAGAAGTACTCACACTTACAGAAGCAGCTGAGGCAGAATTA GAAGAGAATAGACAAATCTTAAAGGAAGAACAGGCAGGGTCTTATTATGACCCTAAAAAA CCTTTAGAAGCACACATCACTAAACTAGGGTCCCAGCAATGGGGATACATGATTAAGCAA GAGCAAAAA------GGCCCAC------CCCTAATAACAGGAAAGACAGCAAAAACCTTT GCAGCACATAGTAATGACTATCAATCTCTTGCTCAATTGTTAAATAAAATAGGGATCCAA TCACTATGGTATTGGGGAAAGGTACC-----------------AACATTCCATCTCCCAG --------------TAAAAAGAGAGGAATGGGAAAAATGGTGGACAGACTATTGGCAAGC CA------CATGGGTACCAGAAGTCAAATTCATAAGTACCCCGCCATTGGT--------T AGGTGGTACTATAACTTGGT------------------ACCAGAACCCATACC------A GAAGCAGTAACCTTCTACGTAGATGGAGCAGCTAATAGAGACAGCAAGACAGGAAATGCA GGATATGTAGCAAGTGATGGGACACAGAGAGTACAGTATCTGGAGCAAACAACAAACCAA CAGGCAGAATTAGAGGGCTTGCTCATGGCATTGCAGG---ACTCAAAAGACAAAGTAAAT ATAGTAGTAGATTCACAATACTC------------------TTATGGCATTCTTATGACA TGCCCCACT-------AACACAGAACACCCAATAGTGGAGCAGATAATACAAGAGGCCAT AAAAAAGGAAGCCATATATGTGACATGGGTCCCAGCCCATAAAGGA---ATAGGAGGAAA TGAAGCTGTTGATAAACTAGT--------------------CAGTAAA------------ ------------------------------------------------------------ -------------------------------------------GGAATAAGAA------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------AAAT----------- -----------CCTATTCCTAGAAAGAATTCCCCAAGCACAG-GAAGATCATGA-AAGGT ACCACTCAAATATGGAGTATCTTAGGCAGGAGTTTCATCTACCCCGACAGGTAGCAAAAG CAATTATACAACAATGTCCAAAATGTCAAAATA------------GAGGAGAA------C CAAAACATGGGCAAGTAGATGTAGATATA------------TATAATTGGCAGATGGACT GTACTCATGAGGAAGGC------------AAAGTAATCTGTGTAGCAGTAAACACAGCTA GTGGATATATAGAAACCAAGATCTTAAAAAGGGAAACGGGGGATGAA---ACAGCATTGT TTCTCATGCAAATAGCCAGTA---GATGGCCAATAAAACAGATACACACTGATAATGGAC CAAACTTTGTCAGTGACAAGTTCAAAGCAGCATGTTGGTGGTGTGGCATAGAACACACTA CAGGTATTCCATACAACCCACAAAGCCAGGGAATAGTAGAGTCCAAAAATAGGTATTTAA AAGAAGCTATCTCACAAATTAGAGACGACGTCACACATTTGCAAACAGCAGTGGCAATG- --------------GCAACCTTCATCTTAAATTTTAAAAGAAAGGGAGGAATAGGGGGGA TATCACCAGGAGAAAGGTACATTAATATGCTATATACAGAACTACAATTACAACA---AA ATA---CAACATCACCAAAATTT---TCGAATTTTAGGGTTTACTAC---------CGCC AGGGGAAGAAC--------GAGTGGAAGGGACCAGCTCGTCTACTTTGGAAAGGTGAAGG TG-CAGTAGTGGTGCAAAC---AGAGGAGGGAGACATTTTTGCAGTACCAAGAAGAAAGG CAAAAATAATTACA------GACCATG---------------------------GAGAAA GAAT-----------GGATAGTGGTTCCCACGTGGAGAATGACCCCAAGACAGATTGA-- ------------------------------------------------------- [53] SIVasc_Red_Tailed_Monkey ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------GCAGGTACTGCGACAGATGGAGCATGTGTCCATAGTGGACATGAAGGATGCC TTTTACAGCGTCCCTCTAGACCCAGCATTTGCTCCGTATACTGCATTTACCGTCCCATCG GTGAATAATGCTTCCCCAGGAGAGCGCTATCAGTTCAGAGTCTTGCCGCAGGGATGGAAG GGGTCTCCTACCATCTTCCAGCACACAGCAGCAGGGATCTTAGAGCCGCTGAGGGCCCAG TACTCA---GATATGACCATCATACAGTATATGGACGACCTCTTAATAGGCTCTAACAGG CCTATTGAAAGTCATCGCAAGGCGGTGCAGGCAATAAGGCAGACTCTGACCTCACAAGGG ATAGCAACCCCGCTGGAAAAATATCAGGA---------GGACTTCCCAGTAACATGGTTA GGGTATGAGTTGCACCCAAAAAGCTGGACCATATCAAAAATAGAACTT------CCTAAT CA------GCAGGAGTGGACAGTTAATGATCTCCAAAAGTTAATAGGGAAGTTAAATTGG GCAAGCCAAATATATCCAGGGATTAAGAC---------CAAGCAGTTGTGCAAACTCCTC AGGGGAGCCAAGGGACTCTTGGACAAAGTAGAGCTCAGCGAGGACGCAGAAGCCGAGCTG AGGGAAAATCAGGAGATTCTGTCTCAAGAACACACAGGGGGATATTACAGAGAGGACCTC CCCCTAGAGGTAGAAGTGGTGTCCCTAGGGGATACACAATGGGGATACATGTTCAAACAG GACAAAC------------AGG------TCCTCAAAACAGGGAAGTTTGCTAAGGTAAGA TCAGTGCATGTCAACCAATATGGACAGCTGGCAGATGCTCTAACCAGGCTAGGCAGAGAA AGTCTGGTCTATTGGGGTCGCTTGCC-----------------GGAGTTCCGCATCCCAG --------------TGGTGCAGGAGCAGTGGAACACCTGGTGGGCGGAACACTGGCAGGC TA------ATTGGATCCCAGAGGTCAAGGCGGTACACACCCCGCCCTTGTT--------G AGAAGCTGGTTCACCTTGGC------------------AACAG---CTCCCTT------G GATGCTCCGACCTTTTACACCGACGGGGCAGCCAACAGAGAATCCAAATTAGGGAAGGCA GGCTATGTGACAAACACAGGGAAAAGAGCCTGCATAGGGTTAGAAAACACTACTAACCAG AAAGCAGAATTGGAGGCAGTCAAATTGGCCTTAAAAG---AAGGGCCAAGAAAAATGAAC CTGGTAACGGACTCTCAATACGT------------------GCTGAACATCTTCGCGGGG GCACCGGAG-------GTGTCCGACCACCCCCTGGTGGAGGACATCATCCAGTTGCTCCT GGGAAAGGAGTCCGTTTACCTCACTTGGGTACCAGCCCATAAAGGC---ATTGGAGGCAA TGAAGAGGTAGATAAATTAGT--------------------AAGTAGT------------ ------------------------------------------------------------ -------------------------------------------GGTATAAGAC------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------AGGT----------- -----------GTTGTTCCTGGACGGTATCAACCAAGCCCAG-GAGGAACATGA-AAGAT ACCACACAAATTGGAAGTATCTTAGAGACACCTTCCAAATACCCACCTTGGTAGCCAAGG AAATAATTAATCATTGCCCAAAATGTCAGAGCC------------AAGGAGAG------C CCAAAACAGGGCAGGTCAATGCGTCACTT------------GGATTATGGCAGATGGATT GCACGCATTTGGAAGGA------------AAGGTAGTCCTAACAGCCGTCCATGTGGCAA GTGGTTATGTATGGGCCAGGATAATTCCCAATGAAACGGGAAGAATC---ACAGCACTGG AGCTGCTAAACTTGTGTGCTA---CATGGCCAGTCCACCACATCCATACAGATAATGGAC CAAATTTTATTAGCCAGGAATTTGCAGCAGCAGTGTGGTGGGCAAACATAGAGCACACAA CAGGGGTACCATACAACCCCCAAAGTCAGGGAGTAATAGAAAATGTCAACAAGCAGTTGA AGAAAACAATTGCCAAAGTCAGAGATGAAGTGCAGT------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------- [54] SIVbkm_Black_Mangabey ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------------ATTAGAAAAGAGAAAAAACGTGTCCATTGTGGATATGAAAGATGCT TACTATTCAGTGCCATTGGACCCCAGCTTTAGTCCATACACAGCGTTTACCATACCATCG GTAAACAATGAACAACCAGGGGTCAGATACGTATTCAAGGTGTTACCACAGGGATGGAAA GGATCTCCTACCATCTTTCAGAATACAGCAGCACAAATATTGAAGAAAGTAAGGGAAAAA TATCAA---GATGTCACAATAATTCAGTATATGGATGAGTTGTTAATAGGATCAGATAGG ACAAATGATGAGCATTATAAAATAGTGACAGAAATTAGGCAAGATTTAATGGGATATGGG ATAGCAACCCCCCAGGAAAAATATCAGAG---------GGGGCATCCAGTAGAATGGTTA GGATATACCCTACACCCAACTACATGGACAATCAATCCAATAGAACTC------CCTGAA GA------CACAGAGATGACAGTAAATGAGCTACAAAAGTTAATAGGAAAATTAAATTGG GCAAGTCAAGTTTATCAGGGAATTAAAAC---------CAAACACTTAGCAAAATGCCTG AGGGGAACAGGGTCTCTTGTGGAAATGGTAACGCTGTCAAAAGAGGCAGAAGCAGAACTA GCTATTAATAAGGAAGTGCTTGCTAAAAAGGCTGAAGGAACATACTATGATAACAGTAAA CCTTTAATAGCAGAGATAACCAATCTAGGCAAACAACAATGGGGATACATAGTTAGACAG GAGGAAA------------AAGGAATCCCTTTAAAGACAGGCAAATTTGCAAAGGTAAGA TCAGTACATACCAATGAATATGATCAATTAGTCCAGGCCATGGCCAAGATAGGAAGGGAA GCCATAACAGTATGGGGAAGACTGCC-----------------AAAATTTAGGATACCAG --------------TAGTAAAGGAACAATGGGATGCATGGTGGCATGAGCACTGGCAGGA AA------GCTGGATTCCAGACATAGAAGCAGTACATACTCCTCATTTACT--------A AGATCATGGTTTACATTAGT------------------GTCAGAACCTATACC------A GACGCAGCCACGTATTATGTGGACGGGGCGGCTAATAAAAACAGCAAATTAGGAAAAGCA GGATATGTCACTGACACAGGGTACTCAAAGGTGGTACACTTAGAAGGGACCACTAATCAA AAGGCAGAATTAGAGGCAATAAAATTGGCCTTACAAG---ATTCAGGATCAAAAGTTAAC ATAGTAACAGATAGCCAATATGT------------------CTTGGGGATCATCTCAGCA CAACCCACA-------AGCTCAGACCATCCAATAGTAGAGGACATTATACAGTTACTATT AGGAAAAGACCAGGTATACATTACATGGGTACCAGGACACAAAGGT---ATAGGGGGAAA TGTAGAAGTAGACAGGCTGGT--------------------CAGTAAG------------ ------------------------------------------------------------ -------------------------------------------GACATCAGAC------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------AAAT----------- -----------CCTCCTTTTAGAGGGGGTTACCCCAGCGCAA-GAGGACCACGA-AAAAT ACCACAGCAATTGGAAATACCTTAGAGAAAAGTTTCATATCCCAGCTCTGATAGCAAAGG AAATAATCAATCAGTGTCCCGGATGTCAGCAAA------------AAGGGGAA------C CAATGCATGGGCAGGTAAACACGGAAATA------------GGCACGTGGCAAATGGATT GTACTCATATGGAAGGA------------AAAGTAGTCATAGTAGCAGTGAATACAGCCA GTGGGTATATGGAAGCACAGGTACTGCCAGATGAAAAAGGAAAAAGC---ACAGCATTAT TCCTGTTGCAACTTTGTGCCA---GATGGCCTATAACACATATACATACTGACAATGGGC CAAATTTTATCAGTCAAGAATATGCAGCAGCCGTATGGTGGACAGGGATAGAACACACCA CAGGAGTACCATATAATCCACAAAGTCAAGGCATAGTAGAAAACATGAACAAGCAGTTAA AGAGTACCATAAAGAAGATAAGAGATGAAGTTCAGTACTTAGAGACAGCAGTGGCACAA- --------------GCATGCTTCATTTTGAA----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------- [55] SIVolc_Olive_Colobus ------------------------------------------------------------ ------------------------------------------------------------ --------------------------TTTTTTAGGGAAAT-------------------- GGAGGGG----------AGGGAAAGC----------AGAGCCTCCCCTCAAC-------- --------------------------------------------------ATGCAA-CAG AGGACAGAGATGGACATCTTTCCCT----------------------------------- ----------------------------------------------------CTGCACCT ACCCTGGAACAGATTTTGGAGAAGGGAACAA----------------------------- ---------------------GGGAAAAGAGAGAGATGAAG------------------- -----------------GAGGAGAAGAAACCTCTTTATCCCTCC--CTAGC--------- ---------ATCTCTCTTTGGAGAAGACCAATGATAGAGCTGTATATAGAAGGACAGCAA GTCACTGCACTGTTAGATACAGGGGCAGATGACACAGTAATTAAGGGGAAGGATATCTAC AT----------G---GAAGGTAATGGGATTCCTAGAATTATAGGGGGAATAGGGGGAGC TATTAGGGTA-ATGCAATATAGATGTA---GGATAAGAAT---------------TTTTG AGAAAGAAATACAAGAGGCAGTATTAGTG---GGAGATACAC------------------ ------CAGTTAATGTGGTAGGAAGGAATGTGTTAGCAGCAGTAGGGATACGTCTGGT-- ----CTGCGCACAGCTTTCAGATA---AGATCCCTATTACTAAGGTAAAATTAAAAGAGG GACACAAGCCTCCACAGATTAAGCAAT-GGCCTTTAAGTAAGGAAAAGATAGAAGCTTTA GAGAAAATATGTGACAGATTGGAAGAAGAAGGTAAGATACAGAAAGCAGAGGCTTCAAAT CAATGGAATACCCCAATATTTTGCATAAAAAAGAAGGACAAAAATGAGTATAGAAAGTTG ATAGATTTTAGGGCTCTAAATGCAGCCACACAAGATTTCTGGGAGGTACAATTAGGAATA CCTCATCCAGCAGGGTTAAAAGAAAGGGAACAGATTACAGTATTAGATATAGGAGATGCT TATTTCTCTATACCGCTAGATCCAGAATATAGAGAATATACAGCATTTACAATTCCATCA GTAAATAATGATAGACCAGGAAGAAGGTATATATATAATGTGTTACCTCAAGGATGGAAG GGGTCACCATGTATCTTCCAGAGTACAGTGGCTCATTTGATGGAGCCTTGGAGGAAGGAA AATCCT---GAGATAGATTTATACCAGTATATGGATGACTTGTATGTGGGATCAGACTTG CCAAGAGCAGAGCATTTAGAGAAAGTAAAACAGCTGAGGGAGCTCTTGAGGAGTTATAAC CTAGAAACTCCTCCAAAAAAGTATCAGGA---------GGATCCACCTTATGAGTGGATG GGGTATACATTATACCCTAAGAGATGGAAGATAGCAAGAATAAAGTTG------CCAGAA AA------AGAAGAATGGACAGTCAATGATATACAGAAATTAGTAGGGCAATTAAATTGG GCTTCACAAATCTATTCAGGAATAAAAAC---------GAAAGCTTTATGTAAACTGATT AAGGGACCTAAAGGGTTGCTAGATAAAGTGGAGTGGACAGAAGAGGCAAAGGAAGAATTA GAAGAGAACAGAGAGATTTTAAAGGAAGAACAAGAAGGAGTGATGTATAAAGAGGAGGAG CCTCTCCAGT---GTACTTTATGCTATACAAAGGGAACGGTAGCATATAGAATATGGCAG AAGCATG------------GAA------CCTTAAAGACAGGAAGGTTTCAAAGGAAGATG ACTGCTCATACAAATAAGTTTAGACAGATGACAGGAGCCATAGAAAAGATAGGAAAAGAA AGTATAGTGATTTGGGGAAAGTTACC-----------------GATTTTTCAGGTACCTA --------------CTACAAGAAAAGATTGGGAAGCATGGGCATTTGATGATTGGCAAGT AC------ATTGGATACCAGACATAGAGTTTGTATCTAATTCTGAAAATCA--------A AGGACATTCTGGGAGTTAGT------------------GCCAGCACCCAT---------G GAGGTAGAAACCTTCTATGTGGATGGAGCATATAATAGGAAAAGCAAGGAAGGAAAGGCA GGATATGTCAGTTCAGGGGGAAAGCATAAAATAGTACACATACAGGAGAGTAGTAATCAG AAAGCAGAAATAAGAGCTATTATAGAAGCCCTTAGGG---ACTCAAAAAGTGAGGTCAAT ATTGTAACAGATTCATTGTATGC------------------CATGGGAATAGTGTTAGAG AAACCAGAA-------GTGTCTGAAGAACCCCTCATACAAGAATTAATAAAGGAGTTGGA GAAGAAAGAAAGAATATATATTGGATGGGTTCCAGCACATAAGGGC---TTAGGGGGCAA TCAAGAAGTAGATCAATTAGT--------------------CAGTAAA------------ ------------------------------------------------------------ -------------------------------------------GGAATAAGGACTAA--- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------------------GCAAGT----------- -----------GATGTTTTTGGCAGACATAGAGCCAGCACAA-GAGAGCCACAA-TAAGT ATCATCAAAATGCACAAAGTTTGCAGCAAGAGTTCCAAATACCACTAATAGTGGCAAAAA GGATAGTAGATGAATGTGAAGAATGTAAAGGGA------------AAGGGGTT------C CTAGGCATGGAATAGTGGCAGTGGGGGTT------------TATAGGTGGCAGATAGACT GCACTCATTTAGAAGGG------------AAGGTGATCTGTTTGGCAGCACATACAGGGT CAGGGTTCCTATATGGAGAAATCCTTAGAGCAGAAGATGGAGAAAAT---ACAGTGAAAT TTGTGCTTAGACTAGCTAGTC---AATGGCCTGTAAAAATAATTCACACTGACAATGGGA CAAATTTTGTGAATCAGAAGATGCAGGCAGTATGCTGGTGGTTAGGGATTGAGCATGAAA CGGGCATTCCGTGGAATCCTCAAAGTCAAGGAATCATAGAAGCAAAAAATAGAGTGTTAA AGGAGATATTAGGGAGAATCAGAGAACAGGCAACACATTTGGAAACAGCATTGGCTATG- --------------GCTATCTTCATTCATAATTTTAAAAACAAGGGAGGACAAGGGGGAG GTACAGTGGCAGAGGAATTAGTAAACCAAATATACACAGATACACAAATAGAATACACAC AAA---ATAAATTTAAAAAATTT---TCAGGATATCGAGTGTATTAT---------AAAA ACAAAGAAGGCC--------AGTGGTGTGGCCCAGCAGAACTCCTGTGGAAAGGAGAAGG AG-CAGTCCTGCTTAAA------GAAGGAGATAAGTATTTCTCTGTGCCTCTGAGGAAAG CAAAAATAGTGAAG------CCTTATGGAGT----------------------------- ---------------GGATAGCAGTGCCAATGTATAG----------------------- ------------------------------------------------------- [56] SIVtrc_Temmincks_Red_Colobus ------------------------------------------------------------ ------------------------------------------------------------ --------------------------TTTTTTAGGGAATG--------------GCCGAG GGCA-------------GAGGCCCTC----------CAACAATTATCCAGTTCAAAA--- ---------------------------AATGAATGCAGGGGTGAATACC-TTTGGG---- ---------CCAGTGGTGCCAACAGC---------------------------------- --------------------------------------ACCAGTGGATCCTACCATGCAA GAACTAGAGCAATATCTTCTGAGAGGAGCTC---------------AGATGAAGA----- ------------------GGGAGAAAGAGAAAGAAATGCAG------------------- -----------------AAGGAGGGGAAAGTAGAATATCCCTCC--CTCAA--------- ---------ATCTCTCTTCGAACCAGACCAATGATACAATGTATCATTGGTCGAGAGAGT GTCTCTGCGTTATTAGATACAGGAGCAGATGACACTGTAGTAG---------ATGTTCAA TT----------A---GAAGGAAATTGGCAACCAAGAATAATAGGAGGTATAGGAGGAAC TATGCAAGTA-AAACTATATAAAGATGTCAGAATAAAAAT---------------TTTAG GAAAGGAAGTAAGAGCAAATTTAATGACA---GGAAAAACAC------------------ ------CTATAAATATAATAGGAAGAAATGTGCTAGAAAAATTGGGAATGCATCTAGC-- ----ATTTGCACAATTATCAGATA---AAATTCCAATAACAAAAGTCTCATTAAAACCTG GATGTCAAGGACCAAGAATAAAGCAAT-GGCCTCTCTCAAAAGAGAAAATTGAGGGGCTA CAAAAGATATGTGATAGATTAGAAGCAGAAGGAAAAATAAGTAGGGCAGAAGCAAATAAT CCTTACAATACACCAATCTTTGCAATAAGAAAGAAAGATAAAAATGAATGGAGAAAATTA ATAGATTTTAGAGGACTAAATGCAGTAACACAAGACTTCTTTGAGGTACAATTAGGCATT CCTCATCCAGGAGGGTTACATAAGAAAAGAAATATAACAGTATTAGATATAGGAGATGCA TATTTTTTTATCCCATTAGATCCAGAATATAGACAGTACACAGCATTTACAGTACCTTCT ATAAATAATGAGAAACCAGGTACCAGATATGTATATAATGTACTCCCTCAAGGATGGAAA GGGTCTCCTTGCATATTTCAAGCAACAGTGGCTTCTTTGCTGGAGATCTTTAGAAAGAAA CATCCT---AAAGTGCAGATAGTCCAATATATGGATGATCTGTATGTAGGATCAGATTAT GAAAAGAAAGAACATTTGCAAATGATTCAGGAGTTGAGAGATCTTCTTTTAACTTGGAAC CTGGAGACTCCAGAAAAGAAGCTACAATT---------AGAACCTCCATGTAAATGGATG GGGTATATCTTGCATCCAGATAAATGGGAAATACAGGAGATAAAATTA------CCAGA- --------AGAAATAAGGACAGTAAATGATGTACAGAAACTGATAGGAAAATTAAATTGG GCAGCACAAATATATGAGGGTATAAAAAC---------AAAAGAATTGTGTAAATTAATT AGGGGAAATAAACCTCTAACAGCAGAAGTAGAATGGACCATGGAAGCAGAAGCAGAACTA GAAATCAATAGAGCTATTCTAAAGGAATCACAACAAGGAAGTTATTATG---GAGGAGGA GACTTAATAGCTGAGGTAATAAAAACAGGAACAGGGCAATGGGCCTACACAATAAAAGAA GCAGGAGAG------ACAAAAC------CATTAAAAGTAGGAAAATTTACAAGAATCAGG CATACTCATACAAATGAGCTAAGAACATTAGCTCATTGTATACAGAAAATAGGAACAGAG GCTATAGTAATTTGGGGGAAACTTCC-----------------AAAATTTAGAATCCCAG --------------TAGAAAAGGATATATGGGACATGTGGTGGTCAGAATACTGGCAGGC CA------CATGGATCCCAGAGGTAGAACATGTGTCTACTCCTTTTCTAAA--------A AGGGAATGGTACACATTAGT------------------ATCAGAACCTATAGA------A GGGGTAGAAGAAATGTATATAGATGGGTCTGCTAATAAAGAGAGCAAAGAAGGGAAAGCA GGATATTGGACTAAGAC---TAGGAACAAGATACAGAAAATCACAAATACTACAAATCAG CAGACTGAGCTGATTGCATTAAGAATGGCATTAGAAG---ACAGTTCAGATAAGGTAAAT ATAATCACAGACAGTCAATATGT------------------TTTAGGAATCATAAAAGAT CACCCAACT-------CAAAGTGAATCTCCCTTAATGCAAGAAATAATAGACCTTCTAAA AGGGAAAGAAGAAATATATATCACATGGGTGCCAGCACATAAAGGG---ATAGGAGGAAA TACAGAAATAGATGCATTAGT--------------------AAGTGCA------------ ------------------------------------------------------------ -------------------------------------------GGCATTAGATCTA---- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------GAGT----------- -----------AATGTTTCTAGAAAATATAACCCCAGCAATA-GAGAGTCATAC-AAAAT ATCATCAAGGGTGGGGGGCATTAGAGGAAGAATTTCATCTGCCCACCATTCTTGCAAAAA GAATAGTAGAAGAATGTGCTACCTGTCAGGGAA------------AAGGGGGACA---CC CTATTCATGGCATGGTAGACTATGAGATA------------GGGACATGGCAGATGGACT GCACCCACTTGGAAGGA------------AAAATCATATTAAATGCAGTCCATGTGGCAT CAGGCTACTTAGAAGCGAAAATAATTCCAACAGAAGATGCCTATCAA---ACAGCACTTT TCACCATACAATTAGCAGGAA---GATGGCCAGTAAAAAAGATTCATACTGATAATGGAA CAAATTTCAAATCACAGAAAATGGAGGCCATATGCTGGTGGTTAGGCATAGAACAGGAAT TTGGGATTCCCTACAATCCTCAGAGTCAAGGAGTAATTGAGAGTAAAAATAGAGTATTAA AACAAATAATACAAAGAATAAGAGAAGATGCAGAAAAATTGGAAACAGCATTAGCTATG- --------------GCAATCTACATTCACAATTTTAAAGAAAAGGGAGGATTGGGGGGAT ---CCCCAGCAGAAAGAATAGTAAATATGATACAATCAGATATAGAAACTAATCAAACAC AAC---AACAAAAATTCAAATTT---AAAAATTTTCAGGTTTACTAC---------AGGA CAGGAGCCTCGCA-----GCAGTGGCAAGGACCAGGTAAATTGGTCTGGAAAGGTGAGGG AG-CTTTAGTTGTGCAGAC---TCCTGAAGGAGATTTACTTACAGTTCCCAGAAGAAAAG CAAAAATCATAAAG------ACTTGGGATG------------------------GAAAAG GAAT-----------GGATAGCAGTACCACTAATTAA----------------------- ------------------------------------------------------- [57] SIVwrc_Western_Red_Colobus ------------------------------------------------------------ ------------------------------------------------------------ --------------------------TTTTTTAGGGAATG--------------GGAGAG GGCA-------------GATGCCCTC----------AAACAATTACCCAGTTCAAAA--- ---------------------------GGTGAG---GAGCTTGAACAAT-TTTGGG-CCG GCAACAATACCGTCTGCTCCTCCAAT---------------------------------- --------------------------------------GAGGGAGGATCCAAACATACAA GAATTAGAGAAATACCTCCTGAAAGGAGCTC---------------AATTGAAGG----- ------AGCAGGCACAGGCAAAAAAGGAAGAGAAGAAGAGA------------------- -----------------GAAACGGGGCTGCCAGAGTGGCCTTCC--CTCAA--------- ---------ATCTCTCTTCGAAACAGACCAATGATACAATGTATAATAGAAGGAAATAGT GTCTCAGCCTTGTTAGATACAGGAGCAGATGATACAGTAATAG---------ATATCCAT TT----------AAATAATAAGAATTGGCAACCTAGAATAATTGGAGGAATAGGAGGCAC TATGAATGTT-AAATTATATAGGAAAATACAAATAAGAAT---------------TTTAG GGAAAACAGTAGAAGCAGATATTATGACA---GGAAAAACTC------------------ ------CAATTAATATTATAGGTAGAAATGTATTAGAAAAAATGGGTATGCATTTGGC-- ----CTTTGCACAATTATCAGATA---AGATACCCATAACAAAAGTAAGTTTGAAGCCAG GATGCACAGGACCAAGAGTGAAGCAGT-GGCCTTTATCAAAAGAGAAAATAGAAGGGCTA CAGAAAATCTGTGATAGATTAGAAGCAGAAGGAAAAATTAGTAAAGCTTCCCCAGGAAAT CCATATAATACTCCTATATTTGCAATAAAGAAAAAGGACAAAAATGAATGGAGGAAGCTC ATAGATTTTAGAAAATTAAATGAAGTAACACAGGACTTCTTTGAAGTACAGTTGGGCATT CCTCACCCAGGAGGACTAAGAAAGAATAAAAATATTTCAGTAGTTGATATAGGGGATGCC TATTTTTCCATCCCACTAGACCCAGACTATAGGCAGTATACAGCTTTTACTGTACCATCA GTAAATAATGAATCTCCTGGGAAGAGGTATGTCTATAATGTACTTCCTCAAGGGTGGAAG GGTTCCCCTTGCATTTTCCAAGCAACAGTAGCAAGTTTGTTAGATGTATTCAAGAAACAG AATCCT---ACTATGCAGATTCTCCAGTACATGGATGATTTATATATAGGAAGTGACTTT GAAAAACCAAGGCATTTAGAGAAAGTAGAAGAGTTAAGACAACTGCTGTTGACTTGGAAT TTGGAAACTCCAGAAAAGAAATTGCAATT---------AGAGCCGCCCTGCAAGTGGATG GGTTATATTCTACATCCTGATAGATGGCAAATACAGGAAATAAAACTA------CCAGA- --------GGAAGTAAGAACAGTAAATGATGTACAAAAATTGGTGGGAAAATTGAATTGG GCAGCACAGATTTATGAGGGAATTCAAAC---------AAGACAATTATGCAAATTAATT AGAGGAAACAAACCCCTCACAGAAGAAGTAACATGGACAGAGGAAGCATTAGAAGAGTTA GAAATAAATAAAAGCATTCTAAAAGAGGAGCAAATGGGGGCTTATTATA---CTGGGAAA GAATTAGTGGCAGAATTAATAAAGACAGGATCAGGACAATGGGCCTATAGTATTAGAGAA GCAGGAGAA------AAGAAAC------CATTAAAGGTAGGGAAATATGGGAGGCAAAGA CATACACACACCAATGAGCTTAGAAGCTTGGCTCATGCCATGCAGAAAATAGGGACAGAA AGTATAGTAATCTGGGGAAAGGTACC-----------------CAAATTTAAGATACCCA --------------TAGAAAAGGATATCTGGGACTCATGGTGGTCAGATCACTGGCAGGT CT------CATGGATTCCAGATACAGAACATGTATCAACCCCTTACTTGGC--------A AGGGAATGGTACAAAATAGT------------------ACTGGAGCCTATAGT------A GAGGTGGAAACATATTACATAGATGGATCTGCAAATAGAGACAGTAAGGAAGGGAAAGCA GGCTTCTGGACAAACTC---TAAAGAAAAAGTAATTAATTTATATAACACCACTAATCAG CAAGCAGAATTAGCGGCTTTGAAGTTAGCCCTAGAAG---ATGGGGGTTCAAAGATCAAT ATTATTACAGATAGTCAATATGT------------------TATGGGAATAGTAAAAGAC CACCCTACT-------ATTAGTGAGTCAGCTCTAGTACAAGAAATTATAGATCTTCTAAA ACAGAAAGAAGAAATTTATATTGAGTGGGTGCCAGCACATAAAGGG---ATAGGAGGTAA TACAGAAATTGATAAATTAGT--------------------AAGTGCA------------ ------------------------------------------------------------ -------------------------------------------GGAATTAGATCAA---- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------AAGT----------- -----------AATGTTCTTAGAAAATATAACTCCAGCGATA-GAAAGCCATAC-TAAAT ATCATCAGGGCTGGAAAGCATTACAAGAAGAATTTCATATTCCACAATTAATTGCAAAAA GAATAGTAGAAGAATGTAGTACCTGTCAAGGAA------------AAGGAGGAGC---TC CACTACATGGTATGGTAGACTATGAAGTG------------GGAACATGGCAAATGGATT GTACTCATTTAGAAGGA------------AAAATCATTCTAAATGCAGTCCATGTAGCAT CAGGGTATCTAGAAGCAAAAATCATTCCAGCAGAAGATGCTTATCAA---ACAGCTCTAT TCCTCCTACAAATCGCAGGTA---GATGGCCTATGAAAAAGATTCATACGGATAATGGAA CAAATTTTAAGTCACAGAAAATGCAGACTATCTGCTGGTGGTTAGGAATAGAACAAGAAT TTGGGATCCCTTATAATCCTCAAAGTCAAGGAGTAATAGAAAGCAAAAATAGAAGGCTAA AAGAAATAATACACAGAATTCGAGAAGACGCAGAAAAGTTAGAAACAGCATTAGCAATG- --------------GCACTATTCATTCACAATTTTAAAGAAAAGGGAGGATTGGGGGGAT ---CCCCAGCAGAAAGATTAGTAAATATGATCACAGCAGAACTAGAAACCAATCAAACAC AAC---AACAAAAATTAAAATTT---AAAAATTTTCAGGTTTATTAC---------AGAA CAGGAGCCAATCA-----GCAGTGGCAAGGTCCAGGTAAGCTCCTTTGGAAAGGAGAAGG AG-CCTTAGTAGTGGAA------ACCCCAGAAGGTATAATAACAGTTCCTAAAAGGAAAG CAAAAATAATAAAG------GTCTGGAATG------------------------GAGAAG GAAT-----------GGATAGGAGTTCCTCTAATAAAGAT-------------------- ----------------------------------TAG------------------ [58] SIVblc_Black_Colobus ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------------------TGT---ATAGGAGGAAA TGAGAAAATTGACAAACTAGT--------------------------------------- ------------------------------------------------------------ -------------------A-----------------------GGTATGAGAC------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------AAGT----------- -----------AATGTGGTTAGGGCAAGTAGAAAAAGCGAAG-GAAGATCATGA-GAGGT TCCATAGCAATGTACCATATATGGAACAAGAATTTGGCCTTCCCAAAATAGTAGCAAAAG AAATTTGGGAAAGTTGTGACAAATGTCAGATAA------------AAGGACAG------C CTATTCATGGATCAGTAGATTACACCTAT------------GGGCTTTGGCAAATAGATT GCACACATGTTGAGGGA------------CAAGTTATTCTGGTAGCATGTCATGTGTGTA CAGGATTTACTTGGGCCAAGATACTACCTAGAGAAACAGGAAAAGAA---ACTGGGAAAG CAATATTAGATTTGGCAACTA---TGTGGGAGGTAAAACAAGTCCATTCAGACAATGGAC CAAATTTTACAAGCCAAGATTTCAAAGTATTTTTGTGGTGGGCAAACATTAAACATACAA CAGGAATTCCCTATAATCCACAATCACAAGGTGTGGTAGAGCAAAGAAATAAGGTAATAA AAGAGAACCTGGAAAAACTAAAAGATCAAGCTGAAAGTCTTCAAACCAGACTCGCCATG- --------------ACCATCTACATGCTTAATTTTAAAAGAAAGGGG------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------- [59] SIVcol_Mantled_Guereza ------------------------------------------------------------ ------------------------------------------------------------ --------------------------TTTTTTAGGGGCAACCAGG--------------- ---------------GGGGTGGAGCTAC-----AGACAGCCATCTTCCCC---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------CCGAAGA----- ---------------TGAGCAAAGACCTGCCACCCAGGAGG------------------- -----------------GAGAAGGGGGAGAGTCTCTATCCCTCC--TTGAA--------- ---------GTCTCTCTTCGGAGACGACCAATAGTTATAGTAGAAGTAGAAGGACAAAAG TGCCAAGCGCTGTTAGATACAGGAGCAGATGATACAGTTTTTAAAGAAGAAGATGTTCAA TT----------A---ACAGGCGCTTGGACAGCAGTACAAATTCAGGGAATAGGGGGAGC AATCAGAGTA-AAACAGTATAGAGATAAAATTCTAAAGAT---------------GGGAG GAAAAGAATACAGAGGAGATATCTTAATA---GGACACACCC------------------ ------CCATAAATATAGTAGGTAGAAATATGTTAAA------AGAAGGGAAATTAGT-- ----AGTAGCTCAATTATCAGATA---GGATCCCAGTCACCAAGGTGACGTTAAAAGAGG GCATGGATGGGCCAAAAGTAAAGCAGT-GGCCCTTAAGCAAAGAAAAAATAGAAGGTTTA CAAAAGATATGTGAAAGATTGGAAGCAGAGGGAAAAATAGAAAAAGCAGAATTAGGGAAT CCATATAATACACCAATATTTTGCATTAGGAAAAAAGATAAAAATGAATGGAGGAAATTA ATAGATTTCAGGGAGCTAAACAAGAGAACACAAGACTTCATGGAAGTCCAATTAGGGATA CCACACCCAGGAGGTCTTATAGAAAAGACCCATATAACAGTATTAGATATAGGAGATGCC TATTTCTCAATTCCCTTGGATCCGGATTATCAAAAGTACACAGCTTTTACAATCCCATCA GTGAACAATTTGGCACCAGGGACTAGATATGTGTACAAAGTGCTACCGCAGGGTTGGAAA GGGTCTCCAACAATCTTCCAAGGAACAGTAGCAAGAATCCTAGAACCGTTCAGGAAGAGA GG------ACAATTGCAAATAGCTCAGTACATGGATGATTTATATCTAGGATCAGATCTG CCTTTAGAGGAGCATAGAAGGGCAGTACAGGAGCTCAGAGATGCACTCTTGTACTATGGG TTAGAGACACCAGAAAAGAAATACCAGGC---------AGATCCTCCATACAAGTGGATG GGCTATGAATTACATCCTAAGCAATGGAAATTACAAAAGGTCAAAATT------CCAGAA CA------GGATAAGTGGACAGTAAATGATATACAAAAATTGGTAGGAGCCTTAAATTGG TTAAGCCAATTATACCCAGGAATCAGGAC---------AAAGGAGATAAGTAAATGCACT AAAGGTAAGAAGCATTTGTTGGAGGAAGTGCAGCTTAGTGCAGAAGCAGAAGAGGAGCTA CAAGATAACAAACAGATAATCAAAGAAGAAGTTCAGGGAGTGTACTATATACCACATGAG GACATTTGGGTAGACATTTTCAGGTTAGGGAAAGGACAATGGGGCTATGCAGTCTGCCAA AAACATG------------GAA------CGCTAAGAAGAGGAAAACATAACACAGGCAAA AATCAGCACTTTAATAGTATGCAGGAGTTAGCTTCAGTTATACAAAAGATAGGTAGGGAA GCCATAGTCACCTGGGGAAAGGTGCC-----------------CAAAATGAAAGTCCCAG --------------CAAAGAGAGAGGATTGGGAACAGTGGTGGAGTGACTATTGGCAAAG TG------CTTGGATCCCAGAGATAGAGTTTGTCTCATCCTCTTATGTAGT--------A AAATTAGTATGGAACTTGGT------------------TTTAGAGCCTCTGAA------G GAGGCACCAACTTATTGGACAGATGGAGGATGCTCCAGGAAATTAGGAGCGGGAAAGGCA GGATGGATAAATTCAAAAGGAGAAGAAGAAGTAGTCAATCTTCATGAAGGGTCAAATCAG CAAGCAGAGCTGACAGGAGTTTTGCTAGCTCTAAAAC---ATGGGCCAAAAAGAATGAAT TTGGTAACAGACAGTCTTTATGC------------------ATTAGGGATAATTACTGGG CAGCCATAT-------GATCAGCTTCCATCTAGTAGAGGGGAGATTATTCAGGCAGGTAT GGCTAAAGAAGCCATTCATGTAGCCTGGTGTCCAGCACATAAAGGG---ATAGGAGGAAA TGAACTGATAGATCAAAAGGT--------------------------------------- ------------------------------------------------------------ -------------------A-----------------------GGAGTAAGAC------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------AGGT----------- -----------AATGTGGATAGATAAAATAGAAGCAGCAGAA-GAAGACCATCA-AAAGT TTCATAGTAATGTGCAGTATCTAAAAGAACAATTTGGGTTACCCACTGTAGTAGCAAAAG AAATTTGGGAAAGATGTTCAGAGTGTCAGAACA------------AAGGACAA------G CTGTTCATGGCCAGCTAGATTATAGCTAT------------GGCTTATGGCAATTAGATT GTACTCATGAGGAAGGA------------AAGGTTATCTTAGTAGCAGTACACGTCTGTA CTCTGTTCTGCTGGGCAACCATATTAAAGAGAGAAACAGGGGAAGAA---ACAGGTAGGG CCCTCATAAAATTGGCTAGTC---AGTGGGAGGTTAGACAAGTTCACACAGATAATGGGC CAAATTTTGTAAGTCAGCACTTTAAGGCAGCAGTGTGGTGGCTAGGAATAGCACACACCA CAGGACACCCCTATAATCCTCAATCACAAGGAGTTGTAGAGCAGAGAAACAAGGATGTTA AAAGAAAGATTAAGAAAATGAAAGATCAAGCAGAAACATTAGAAAGCAAAGTAGCAATG- --------------GCAGTCTATGCGCTCAATTTTAAAAGAAAGGGAGGATTAGGGGGGA AGAGTCCATGGGAAAGACAAGTAGAAAGAGCAATAATAGAATTAGATACACAAAACCTAA CAAAATTACAAAATCAAAAATTT---AAAAATTTTAAGGCCTACTGG---------AAAG AGCACACAGG--------AGAGTGGCAAGGACCAGGAGAACTGGTGTGGAAAGGTGAAGG AG-CGGTAGTCATCAGAAA---TTCTCAAGGTACCTTGTTTGTGAAACCTAGAAGAAAAG TAAAGATCACCAGA------CTCCAATATG------------------------GAGAAG ATGT-----------GGGCAGTGAGAATTTGTTATCCAATGGGCAAAAGGAAGCCGAAAC CGTTAAGGGAAT------------------GGATTAA------------------ [60] PSIVgml_Grey_Mouse_Lemur ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------ATCACCGGCCCCTAGTGACTCTGAAGGTAGGGAGACAATCG GTCACCCTCCTGATAGACACCGGGGCTGACAATACAATTATCCATCCTAAAGATTGGAAA CC----------AGTAGGAATGGAAGAGGGGATAATTAACATAGGGGGAATTGGAGGTTC TCAAAAGGGG-ATATTATACAAACAAGTACCTATTAGTCT---------------AGCAG ATAGGCAGATACGGAGAACTGTCATAAGG---GCAGTGACCC------------------ ------CTATAAATTTACTAGGGAGGGACAATTTAGTATCACTAGGAATTGGAGTAGTGA TGCTAATGGCACAAATGTCAGTAA---AAATAGTGCCGCTGCCAGTTGAGTTAATGCCTG GCTGTGATGGGCCAAGAGTAAAACAGT-GGCCCCTTACGCAAGAGAAATATCAGGCTCTT GCTGAAATAGTATCTAAATTAGAAAAAGAGGGAAAAGTCAGTATAGCAGAGGTAAGTAAT CCCTACAACACTCCGGTGTTTGCCATTAAGAAAAAATCAGG---CAAATGGAGAATGCTC ATTGACTTTCGAGTGCTAAATGCTCGAACCAAAAAGGGAGCTGAATTTCAACTGGGCTTG CCTCACCCCGCCGGCCTACAAAAAAAAGATAATGTCACCATACTAGATATTGGTGATGCT TATTTTACCATACCATCGGACCCCACATTTAAAAAGTACACTGCCTTTACTCTAATACCA CCTAATAATCAGGGACCAGCCAAGAGATTTGTGTTTAATTGTCTACCACAAGGGTGGGTG TGTAGTCCAGCCTTTTACCAAAGGACTATGAGTGACATCTTACAACTATGGAAACAAGCT CATCTT---GAGGTCATGTTATATGTCTACATGGATGACCTTCTAATCGGGACAGACCTC CCCTTGAGGGAGCATAGAAGGCTGGTCCAAGAGCTTAGGAGTATGCTTCTTGGCTGGAGC TTTGAAACTCCTGAAGAAAACGTGCAGGA---------CCAGTGGCCGCTACAGTAGATG GGATATGAGTTACACCCTAATAATTGGCAGTTGCAGGTCCGAAAATTA------GAGTTA CC------AGATCACCCCACTTTAAATGAAGTCCCAAAACTGGTGGGAATTATTAATTGG GCTAGTCAAATTATTTCAGGGCTTAAAAT---------AAAGAAGCTTACTGCTATGATG GCAGGGAATCAGGATCTCAATAGAAAGATAGAATGGACTAAGGAAGCTAGAAAGGAAGCT GAAGAGGCAGCTAAGCTGCTCTAGGAGCTCCCAGCAGGGGGGTATGTCGACCCCTTGAAA CAGGTGGAGGCTAGAATAGCTTTTGTAGGTTTCCTCGAGGTAACCTACGACGTCCATCAG GAGAATATCA------------------TCCTTTGGTGTGGCAGA---GTAGGGTCCAGC AAAGCTTATTGTAACCGG-TGGATCTGTATGTAAAAGCAGCAATAAAAATAGGCAGGGAA ACCTTGATTAGGCTAGGAGTGGTCCC-----------------CATACTCACTGTCCCAG --------------TAGCAAAAGATATCTGGGATAGTTTTGCATGGACTGCAGGGGAGGT AG------CATGGTTCCCAGAAGTAAGACATCAGGCACCTCCTCTAATAGT--------T GAGAGATGGATGAAAATGGT------------------ATCAGAACCCATTAA------G GGGGCAAGAACTTGGTATATCGATGGATCT---AAGAAACGGGCCCAAAAAGCTAGAGCA GGAATTTGGACAGAGGGAGAGAAGGCACAAGTACAGGAACTGGAG---GGCTCAAATCAA AAAGCAGAATTGGCAGCCTTATTGTATGCCTTACAGC---AGGAAGACCAAGAATTAAAC ATTATCACTGATTCTCAATATGT------------------AATGAAAGTGCTGCGACTC GTGCCATGG-------GTTAGCGATTCTCCCTTGGTGCAGAGCATCATACAAGCAGTAGA GAAAAAACAGGCTATCTATTTAGATTGGGTGCCAGGTCATAAGGGA---ATCCCAGGAAA TCATAAAATTGATGAAGAAATTCAATAT-------------TGGCAAG-----------G TTTGGTTATCCAAGGCACAGGTATCCTTCCTAAAAGAGAAGAGGAT------GTAGGCTA TGATTTACAAATTCCAG---AAGATGTGTACCTGCAGGGCTTGGAAAGGCGGTCCGTTCC GTTGAACTTGTGAGTTCAATGGGAAAAAGACCAATGGGGGTTGATTGTGGCAAAGTCCTC TATGGCTCAGATGGGGGTGATTCCTTTAGGTGGAGTCATAGATTCTGGGTA-TAGAGGAC CCATCATCATCATCCTATGGAATCTTAATAGAAAGGCAGTACTCCTTAAAGCCGGAAAAA GAGTGGCTCAACTAGTTATAATGTCTCTACTTCATGAGGAGTTGCAACAAGTTCAGCAGG TCAAAATTGACACGGCCCGAGGTGAAGGAGCATTTGGTTCCACTGGAAC----------- -----------CTATTTCTTGGAGGCCATCCCTAGAGCAGAA-AGTGATCATGA-ACTAT GGCACTCGGGGGTTAAAGCTCTCATGCAGGATTTTGGAATATCTCAAATGGTGGCTAAAG CCATCGTGCATAAATGTCCTAATTGCCAAGGGA------------AAGGGTCT------G CCATTACAGGGGTGGTGGATTACACCCCG------------GGGACATGGCAGATGGATG TTACCCACTGGGAAGGA------------CATAAACTGTTAGTAGCAGTTGAGACTGCTT CTGGGTTAACATGGGCTAAAACTATCCCTGATGAAACAGCCAAAACC---ACTTTGTTGG CTACATTAGAACTGCACAGTG---TTTTCAAAGTGAGTCATTTACATACAGATAATGGGC TTAATTTCACTGCTGAAAGATTTACTAATGCTCTTGCCTGGTTAGGCATTAAGCACTCCA CAGGCATCCCCTATAATTCTCACTCTCAAGGGGTAGTGGAATCTACCAATAAGTTGTTGA AAGAAATGCTCCACAAAATTAGACCCAAAATGGAGACAGTTCACGCGGCTGTCTATATG- --------------GCTTTATTTGTCATTAATTTTAAACAAAGGGGTGGAGTGGGAGGTA CAACTAGATATGAAAGACATTTAGACATGGGATTGGAAGACTTACAAAATTACCATTTCA AAA----------------ATTTG--GACTCGTACCATGTTTACTTT---------AAAC AGCCACCTCAAAA-----AACCTGGCAGGGACCAGCTCGTCTCCTTTATAAGGGGCAGGG AG-CAGTGGTCTGCGAG------GATCAAGGAAAGACAATAGCAGTACCTAGACGCTACT GCAAGATCATAACA----------------------------------------GGAGGG GAAT-------------------------------------------------------- -----------------------------------AG------------------ [61] pSIVmb_Mohol_Bushbaby ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------GAGGGAGAGAAGGCACAAGTACAGGAACTGGAG---GGCTCAAATCAA AAAGCAGAATTGGCAGCCTTATTGTATGCCTTACAGC---AGGAAGACCAAGAATTAAAC ATTATCACTGATTCTCAATATGT------------------AATGAAAGTGCTGCGACTC GTGCCATGG-------GTTAGCGATTCTCCCTTGGTGCAGAGCATCATACAAGCAGCAGA GAAAAAACAGGCTATCTATTTAGATTGGGTGCCAGGTCATAAGGGA---ATCCCAGGAAA TCATAAAATTGATGAAGAAATTCAATAT-------------TGGCAAG-----------G TTTGGTTATCCAAGGCACAGGTATCCTTCCTAAAAGAGAAGAGGAT------GTAGGCTA TGATTTACAAATTCCAG---AAGATGTGTACCTGCAGGGCTTGGAAAGGCGGTCCGTTCC GTTGAACTTGTGAGTTCAATGGGAAAAAGACCAATGGGGGTTGATTGTGGCAAAGTCCTC TATGGCTCAGATGGGGGTGATTCCTTTAGGTGGAGTCATAGATTCTGGGTATTGGAGGAC CCATCATCATCATCCTATGGAATCTTAATATAAAGGCAGTACTCCTTAAAGCCGGAAAAA GAGTGGCTCAACTAGTTATAATGTCTCTACTTCATGAGGAGTTGCAACAAGTTCAGCAGG TCAAAATTGACACGGCCCGAGGTGAAGGAGCATTTGGTTCCACTGGAAC----------- -----------CTATTTCTTGGAGGCCATCCCTAGAGCAGAA-AGTGATCATGA-ACTAT GGCACTCGGGGGTTAAAGCTCTCATGCAGGATTTTGGAATATCTCAAATGGTGGCTAAAG CCATCGTGCATAAATGTCCTAATTGCCAAGGGA------------AAGGGTCT------G CCATTACAGGGGTGGTGGATTACACCCCG------------GGGACATGGCAGATGGATG TT---------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------- [62] PSIVfdl_Fat_Tailed_Dwarf_Lemur ------------------------------------------------------------ ------------------------------------------------------------ ----------AAAACGGGAGGAGGAGCCCATCAGGG----------------GCCCCACT AGAGATGACA-----GCAGTGCAGCCCTC---TGCACCAGAACCTCCCCCAG-------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------GGGGGGGGAGATGGGGTTGTACCCCACC--CTCAA--------- ---GGAATTATTAAATTAGATCACCAGCCCCTGGTGACTCTGAAGGTAGGGGAACAATCG GTCACCCTCCTGATAGACACCGGGGCTGACCATACAATTATCCACCCTAAAGATTGGAAA CC----------AGTAGGAATGGAAGAGGGGATAATTAACATTGGGGGAATTGGAGGTTC TCAAAAGGGG-GTATTATACAAACAAGTGCCTATTACTCT---------------AGCAG ATAGGCAGATACAGGGAACTGTCATAAGG---GCAGTGACCC------------------ ------CTATAAATTTACTAGGGAGGGACAATTTAGTATCACTAGGAATTGGAGTAGTGA TGCTAATGGCACAGATGTCAATAA---AAATAGTGCCGCTGCCAGTTGAGTTAATGCCTG GCTGTGATGGGCCAAGAGTAAAACAGT-GGCCCCTTACGCAAGAGAAATATCAGGCTCTT GCTGGGATAGTATCTAAATTAGAAAAAGAGGGGAAAGTTAGTTGAGCAGAGGTAGGTAAT CCCTACAACACTCCGGTGTTTGCCATTAAGAAAAAATCAGG---CAAATGGAGAATGCTC ATTGACTTTCGAGTGCTAAATGCTCGAACCAAAAAGGGGGCTGAACTTCAGCTGGGCTTG CCCCACCCGGCAGGCCTACAAAAGAAAGATAATGTCACCATACTAGATATT--------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------- [63] ELVgv_Malayan_Colugo ------------------------------------------------------------ ------------------------------------------------------------ -------AAAGGGACACATTGCCAGGTTATGCAGAACAAAA-------------AACAGG AAAGCAGGCTCAGG-ACAGGGAGCCC----------AGGCATTGGTATCA---------- ---------------------------------------------------------CAG CCTGTTCTGCCATCAGCACC---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------------------------AGTG---------- -----------------GAGGAAGAGACAACCAAGTCACTTTAC--CCCAA--------- ------ATTACCAGTTTGCAACAAAGACCAATAACATTGATACAGTGTGCAGGGACAGAG ATTAAGGTTTTATTAGATACAGGAGCAGATATTTCAATTTGGG------CAAAACCACCC CC----------AATAGGAAGAAATATAGGCCAGCAATTTGTAATGGGAATAGGGGGAAG TCAAACAGGA-ATTAAATATGATCAAGTTAAAATGACATG---------------GAATA ATAAAACAATTTTAGGTGAAGTAGTAGTG---TGTCCCACAC------------------ ------CTATAAATTTATTAGGGAGAGATAATTTAAGCAAATTTGGAGTACACTTGGT-- ----GTGTACAACGTTAAATCAAC---AGTTAACACCAGTGAAATTTAAATTGTTGCCAG GATTTAGAGGACCACAGGTTAAGCAAT-GGCCATTATCTGAAGAAAAAATTAAAGCATTA CAAGAAATTTGTGCTGAATTAGAACAGGAAAAAAAGATACAAAGAGTAGGTCCAGAAAAT CCTTATAATACACCTGTATTTTTAATAAAAAAGAAATCTGG---TAAGTGGAGGATGCTT ATGGATTTTAGGGAATTAAACAAAGGAATAGATGTAGGAACAGAAACTCAGGTAGGTTTT CCTCATCCAGCAGGGTTTTCACAGGTAAAGCACTTTACTGTTATTGATATAAAAGATGCT TATTTCACCATCCCATTAGATGAAGAAATAAGTGAGTTAACAGCATTTACAGTACCTCAA AAGAATAATGCAGGGCCAGGTATAAGATTTAAATGGAAAGTTTTACCACAAGGGTTGATA GGGTCTCCAAAAGGGTATCAATGTACTTTAGAAAAAATAATAACACCATGGAAAGCAAAA CACCCT---GGCATAACATGTTATGTATATATGGATGATATTTTAATAGGAACAAATTAT ACAGCTCTCAAATATAAACAAGTAGTCAAAGAGTTACAAGAGGAATTTAAAAAGTGGGGA TTTGAAACCCCACAAGATAAAATACAGAATAGTGATGGGGACAAAGCAGTAAAATATTTA GGATATATTTTAGAACCCCAAACGTGGAAACCACATAGCTATCAGCTA------TTGGAT AG------TAAACCAAAAACATTAAATAATGTTCAACGAGTATTAGGAAGAATTAATTGG ATAAAACAAATATATCCTAAGATACAAAC---------AGAAAACATTCAGAAGTTATTA ACAGGAGATCAAAACATATTAAGTAAAAGATCATGGACTAAAAAAACTCAATATGAGGTA GATGTAATACAACAAATGTTAACACAGCAGGAAGGAATGCCTTATCATCAAGAAAAGGAA CTAGTTAGTCTTAGTATTGTGTGGAATCAAGTAGCTCAAGGAGCT------GTCCATCAA AAGCATA------------AGG------TGCTCTGGTGGGGATACGGGACTAGCAAAGAC AGAAAAATAAAAACTAAAGCAAGAAAATGTGTGGCTTTAGCAAATCGTATGGTTTCAGAA ATAATCATACTATTGGGAAAAGTTCCA--------------GATGAAGTTTGGTTGCACA --------------TAGAAAAGGCTACTTTTGAGTATTTATTACAAGAAGGATTAGAGGG AACAGAAATTTGGTTATTAAATTGCAAATTTGGTATGGCACCTAACAAAATTTTTGATAA AAGTGAATGTTTAAGTTATCCTTGTATA--------TGGAAAAGTGCTGTTCCT---GTC ACAGGCCCTACAATTTATATAGATGGATCTAGAAAAAAGGGACAGCCAGCTCGTAGTGCT ATATG---GGAGAATGCAAATAATAATAAAGTAACAGAATTTGAG---GGAACAGCTCAG CAAGCAGAAGTTAGGGCATTTTTATTAGCATTACAAT---TAGAATATAATCAAATGAAC ATAGTTACAGACAGTAAATATTT------------------ATGGACATGTATTAAGTTA ATGTCTGACTATGCG-TGGAAAGAGGAAAATCCCATTTGGCAAGAAATCTGGGAATTATT ACAAACAAAGAAAATATATTTACAATGGGTGCCAGGACATCAAGGG---GTGCCAGGGAA TGAAGAAGCTGACAATTTAGCCC------------------AGGGAAATGT------AGT TCTTACTGCAGAAGAGGAGGACTTACTGCCACAGCAGTCAGAACTTTGTTTCCCTGGGTG GCAAATAAAAGCAGCCA---GAGATTGTTATGTGGCAGCCCAGGAAAAAAGACAAATATT TACAGGAATACACCTCCAGTTGGATGAAATGCAAATAGCACAGATGCAATTAAATTATGA ATTAGCTATAAAAGGATTGTTATTATTACAGTCAACTGTTAAAGAAAGTTA-TTCAACAG AATTAATATTACAAGTTGTAAATTTTACTAAAAAGGGAATAAATATTCAAAAGGGTGATC CAGTTGTTATTTTATATATTATAGCTGCT------------------------------- ------------------GAAGAGATGGGGGAAGCAAAGTTACAAAAGTCAGCTCCAGAT GACATGGCCTGTTTCACCTCAGAAACTTTTCAGGAAGCAGAA-CAGTGGCATGA-TGTAA CACATGCAAACCCCCGACAATTAGCAAGAAAGTTTCATCTTCCTTTAGGATTAGCAAAGC ATATTACACAGTTATGCAAAGACTGCCAACAGCAGGATACTGCTACAGGAGAG------- --GGATATAATCAGTTAAAAAACCAAGAA------------GGTGTTTGGCAGATGGATG TTACACATATGTTTGAGTTAGGACTTTATAAATATGTGTATGTAGCAGTTGACATACAAA CAGGAATGATATGGGTTAGTCCACAAAAGGGAGAAACAGCAAAACAT---ACACAAACAG CTCTGCTTCAGATCATTCATATGGCAGGGCTCCCAAAGGAAATCCAAAGTGATAATGGAC CAGGTTTTGTAGCAGATAGAGTACAAGTGATGTGTAAACAATTAGGGATTAAATGGCATC ATGGCATTCCATACCATCCTCAGAGTCAGGGAAAAGTAGAAGGTACACATAAATTAATTA AACAACACTTCAAAAAGGTGAAAGAGTTATTTGAAGACCCCATTAATGCTCTGTTGTGG- --------------ACAGTATTTTGCCTCAATTTTGAGAAGAGGGGTGGAGATGGGTATA CAAGAGCAGAGGCTTGGGTGG----------AGCAACAGAATTTTAAAAATCAGTTAGAA ACA-TGTAAGCATATGCAAACTT---TAACTAATTCCTGTAAATTTTTGTATA---AGGA TCCCAAGTCACCTCGAACAGGGTGGAGAGGCCCAGGCACTCTGCAGTGGGAAGGAGCAGG CA-TCAGAGTATTAGAACT---TACAACTGGAGAGGTAAAAGTAGTTCCTAAACATCTAA CAAAAAGAATTTTTT-----CA-------------------------------------- ------------------------------------------------------------ ------------------------------------------------------- [64] Mason_Pfizer_Monkey_Virus ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -----------------------------------------------TTAA--------- ------------------------------------------------------------ -------------------CTGCGGCCATTGACATACTTGCAC----------------- ------CCCAACAGT--------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ -----GCGCTGAACCCATCACGTGGAAATCAGACGAACCTGTCTGG-------------- ------------------------------------------------------------ -----------------GTTGATCAGT-GGCCATTAACCAATGACAAACTTGCTGCTGCC CAACAGTTAGTGCAAGAACAGTTAGAGGCAGGACATATTACTGAAAGTAGTTC------T CCCTGGAACACTCCCATATTTGTTATAAAAAAGAAATCTGG---TAAATGGAGGCTCTTA CAAGATTTACGAGCCGTTAATGCCACTATGGTATTAATGGGAGCTTTACAACCTGGATTA CCCTCCCCGGTGGCTATCCCACAAGGGTATCTTAAAATAATTATTGATCTCAAGGATTGT TTCTTTTCTATTCCCCTTCATCCTAGTGACCAAAAAAGATTTGCCTTCAGCCTACCATCC ACAAATTTTAAAGAACCTATGCAACGTTTTCAGTGGAAGGTTTTACCACAAGGTATGGCC AACAGTCCTACCTTATGTCAAAAATATGTGGCCACAGCCATACATAAGGTTAGACATGCC TGGAAA---CAAATGTATATTATACATTACATGGATGACATCCTAATAG---CTGGTAAA GATGGACAACAAGTTTTGCAATGCTTTGATCAACTCAAACAAGAGTTGACTGCAGCTGGG TTACATATAGCCCCAGAAAAAGTTCAATT---------ACAAGATCCCTACACATATTTA GGATTTGAACTTAATGGTCCTAAAATCACTAATCAAAAAGCAGTCATT------CGTAAA GA------TAAATTACAGACTCTTAATGATTTCCAAAAACTTTTAGGAGACATCAATTGG CTCAGAC---CATATCTAAAACTCACTACTGGAGACTTAAAACCCTTATTCGACACCCTT AAAGGAGACTCTGACCCCAATTCCCATAGATCCTTATCAAAAGAAGCTCTTGCCTCACTT GAAAAGGTAGAGACAGCCATTGCAGAACAA----------TTCGTTACTCACATAAATTA TTCACTACCATTAATTTTCCTCATATTCAACACAGCCCTGACACCTACTGGTTTGTTTTG GCAAGACAA--------------TCCTATTATGTGGATCCACCTGCCTGCATCCCCTAAA AAGGTGTTACTTCCCTACTACGACGCTATAGCAGATTTAATCATACTAGGGAGAGACCAT AGTAAAAAATATTTTGGAATTGAACCCTCTACAATCATACAACCATATTCTAAGTCTCAG ATTGATTGGTTAATGCAAAACACTGAAATGTGGCCAATTGCCTGTGCCTCCTTTGTTGGC AT------CCTAGATAACCATTATCCACCAAATAAACTTATCCAGTTCTGTA-------- ----AACTACATACCTTTGTTTTCCCTCAAATCATTAGTAAAACACCCTTAAA------C AATGCCTTATTAGTTTTTACTGATGGCTCTTCCACT---------------GGGATGGCC GCATATACTCTTACTGATACCACCATCAAATTCCAAA---CTAATCTTAATTCGGCTCAA CTAGTAGAACTACAAGCTTTAATTGCAGTCTTATCAGCCTTCCCTAATCAACCTCTTAAT ATTTACACTGACAGTGCTTACTTAGCCCACTCAATACCCCTACTTGAAACTGT------- ---------------CGCACAAATTAAACACATATCAGAAACAGCTAAACTGTTCCTACA GTGCCAGCAACTCATATACAATAGATCCATACCTTTTTATATTGGACATGTCAGGGCCCA TTCTGGACTACCTGGACCCAT---------------AGCTCAAGGCAA------------ ------------------------------CCAACGAGCTGACTTG-------------- -------------------------------------------GCAACTAAAATCGTGGC TA---------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------GTAACATAAAC----------- -AC--------------------AAACCTCGAATCAGCTCAA-AATGCTCATAC-CTTAC ATCACCTCAATGCCCAGACTTTAAGACTTATGTTTAACATTCCTAGAGAACAAGCTAGAC AAATTGTTAAGCAATGTCCTATATGTGTAACTT------------ATCTACCA------G TCCCTCATTTAGGAGTTAATCCTAGGGGATTATTTCCCAACATGATTTGGCAAATGGATG TTACACACTACTCAGAATTTGGCAATTTAAAATATATTCATGTATCTATAGATACATTCA GTGGATTCCTACTGGCCACTCTACAAACAGGAGAAACTACAAAACATGTCATAACCCATT TACTCCATTGCTTCTCTATTA---TTGGACTCCCTAAACAAATTAAAACGGATAACGGTC CTGGATACACCTCTAAAAATTTTCAAGAATTTTGCTCCACACTTCAAATTAAACATATTA CTGGAATCCCCTATAACCCCCAAGGCCAAGGAATAGTTGAAAGAGCCCACTTATCTCTTA AAACCACCATTGAAAAGATAAAAAAGGGGGAATGGTACCCTAGGAAGGGTACCCCCAGGA ACATCCTCAATCATGCACTCTTTATTCTAAATTTTTTAAATTTAGATGATCAAAATAAAT CAGCAGCTG-----ATCGTTTTTGGCATAATAACCCCAA--------------------- ------AAAACAATTTGCCATGG---TAAAATGGAAAGATCCATTAG------------- --------------ATAATACATGGCATGGCCCCGATCCAGTGTTAATTTGGGGCAGAGG TT-CAGTCTGTGTTTACTCTCAAACCTATGATGCCGCTAGATGGCTACCAGAACGGTTAG TAAGACAGGTGTCT-------------------------------------AACAATAAC CAATC-----C----AGGGAGTGA------------------------------------ ------------------------------------------------------- ; END;