#NEXUS
[written Thu Jun 25 16:39:27 CEST 2015 by Mesquite  version 3.02 (build 681) at mdk-crou-001.cbs-niob.local/10.136.73.55]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=9;
	TAXLABELS
		Emarcea_eucalyptigena_CPC_24914 Emarcea_castanopsidicola_AY603496 Anthostomella_proteae_EU552101 Xylaria_ianthinovelutina_JQ936302 Xylaria_juruensis_GU322439 Xylaria_laevis_GU324747 Xylaria_polymorpha_AB274817 Xylaria_grammica_AB625414 Diaporthe_oxe_KC343165 
	;

END;


BEGIN CHARACTERS;
	TITLE  'Matrix in file "Fungal Planet 338 Emarcea eucalyptigena CPC24914.nexus"';
	DIMENSIONS  NCHAR=712;
	FORMAT DATATYPE = DNA GAP = - MISSING = ?;
	MATRIX
	Emarcea_eucalyptigena_CPC_24914    ---------------------------------------------------------------------cgttggtgaaccagcggagggatcattatagag-------ttattacaactcccaaccctatgtgaac--atacctatcgttg-cctcggcggcgcggt-ccggccctgccaccc--------cgaagcgcttaccctgtag-gcgctacccggtggttagggtaggcc-cgcccgccggcggcccacgaaactctgttttagcag-----ttcttctgaatc-gtaaacttaataagttaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccattagtattctagtgggcatgcctgttcgagcgtcatttcaacccctcaagccctgttgcttggtgctgggagcctacagccc-cgctgtagctcctcaaagttagtggcggagtcagtacacactctaggcgtagtaa-ttctatctcgcctctg--cggttgtgctgtcccctgccgtaaaacccc--aactt-tata--ggtttgacctcggatcaggtaggaatacccgctgaacttaagcatatcaata-----------------------------
	Emarcea_castanopsidicola_AY603496  --------------------------------------------gaagtaaaagtcgtaacaaggtctccgttggtgaaccagcggagggatcattatagag-------ttattacaactcccaaccctatgtgaac--atacctatcgttg-cctcggcggcgcggt-ccggccctgccaccc--------cgaagtgcttaccctgtag-gcgctacccggtggtcagggtaggcc-cgcccgccggcggcccacgaaactctgttttagcag-----ttcttctgaatc-gtaaacttaataagttaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccattagtattctagtgggcatgcctgttcgagcgtcatttcaacccctcaagccctgttgcttggtgctgggagcctacagccc-cgctgtagctcctcaaagttagtggcggagtcggtacatactctaggcgtagtaa-ttctatctcgtctctg--tggttgtgctgtcccctgccgtaaaacccc--aactt-tata--ggtttgacctcggatcaggtaggaatacccgctgaacttaagcatatcaataagcggaggaag------------------
	Anthostomella_proteae_EU552101     gacaccccagggccggaaagctatccaaactcggtcatttagaggaagtaaaagtcgtaacaaggtctccgttggtgaaccagcggagggatcattatagag-------ttatcacaactcccaaccctatgtgaac--atacctctcgttg-cctcggcggttgcgagttacccgtgccatatactgcaccggtactgcctacccggcagtgcagggcaccgcagtccgggtagcccgcccccgccggcggcccacgaaactctgttttacgtg-----aatctctgaatc-ataaacttaataagttaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccattagtattctagtgggcatgcctgttcgagcgtcatttcaacccttaag-ccctgttgcttagcgttgggagcctacggcctagcctgtagctcctcaaagttagtggcggagttggttctcactctaggcgtagtaa-ttctatctcgcttctg--cagtggttccggcccccgccgtaaaacccc-taattt-tatactgg-ttgacctcggatcaggtaggaatacccgctgaacttaagcatatcaataagcggaggaaaagaaaccaacagggattg
	Xylaria_ianthinovelutina_JQ936302  ---------------------------------------tagaggaagtaaaagtcgtaacaaggtctccgttggtgaaccagcggagggatcattaaagag--------tgtaataactcccaaacccatgtgaac--ataccttacgttg-cctcggcaggtcgcg-cctaccccgtagaga---------------cttaccctgtagggctctacccggtggac---gcgggta-agcctgccggcggcccacgaaactctgtttagcatt----gtacttctgaacaatataactaaataagttaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccattagtattctagtgggcatgcctgttcgagcgtcatttcaacccttaag-ccctgttgcttagcgttgggagcctgctgt------tgcagctcctcaaagttagtggcggagtcggtacacactctagacgtagtaatttttatctcgcctata--ggttgtgccggtcccctgccgttaaaccccccaattttta-aa-gg-ttgacctcggatcaggtaggaatacccgctgaacttaagcatatcaata-gcgg------------------------
	Xylaria_juruensis_GU322439         -------------------------------------------------------------------tccgtaggtgaacctgcggagggatcattaaagag--------tgtaataactcccaaacccatgtgaac--ataccttacgttg-cctcggcaggtcgcg-cctaccccgaaggtc---------------cctaccctgtagggacctacccggtgggc---gcgggta-agcctgccggcggcccacgaaactctgtttagcatt----atacttctgaattatataactaaatcagttaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccattagtattctagtgggcatgcctgttcgagcgtcatttcaacccttaagcccctgttgcttagcgttgggagcctactct----cctgtagctcctcaaagttagtggcggagtcggtacacactctagacgtagtagttttcatctcgcctata--ggttgtgccggtcccctgccgttaaaccccccaattttta-aa-gg-ttgacctcggatcaggtaggaatacccgctgaacttaagcatatcaataagcggagga--------------------
	Xylaria_laevis_GU324747            -------------------------------------------------------------------tccgtaggtgaacctgcggagggatcattaaagag--------ttctataactcccaaacccatgtgaac--ataccttacgttg-cctcggcaggtcgcg-cctaccccgtagcct---------------cctaccctgtag-gacctacccggtagac---gcgggta-agcctgccggcggcccaagaaactctgtttagtatt-----gaattctgaacc-tataactaaataagttaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccattagtattctagtgggcatgcctgttcgagcgtcatttcaacccttaagcctctgttgcttagtgttgggagcctacggc---acccgtagctcctcaaagttagtggcggagtcggttcacactctagacgtagtaa-ttttatctcgcctatc--agttggaccggtcccctgccgtaaaacacaccaatttcta-aa-gg-ttgacctcggatcaggtaggaatacccgctgaacttaagcatatcaataagcggagga--------------------
	Xylaria_polymorpha_AB274817        -----------------------------------------------------------------tctccgttggtgaaccagcggagggatcattaaagag--------ttctataactcccaaacccatgtgaac--ataccttacgttgccctcggcaggtcgcg--ctatcccgtagcgt---------------cctaccctgtag-gacctacccggtagac---gcgggta-agcctgccggcggcccacaaaactctgtttaatatt-----gaattctgaacc-tataactaaataagttaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccattagtattctagtgggcatgcctgttcgagcgtcatttcaacccttaagcctctgttgcttagtgttgggagcctacggc---acccgtagctcctcaaagttagtggcggagtcggttcacactctagacgtagtaatttttatctcgcctatc--agttggaccggtcccctgccgtaaaacccccc-attttta-aa-gg-ttgacctcggatcaggtaggaatacccgctgaacttaag---------------------------------------
	Xylaria_grammica_AB625414          -----------------------------------------------------------------tctccgttggtgaaccagcggagggatcattaaagag-------ttattacaactcccaaacccatgtgaac--ttaccttttgttg-cctcggcaggtcgcgacctaccctgtgagac---------------cctaccctgtagggtcctacccggtagtc---gcgggta-cgcctgccggtggcccatgaaactctgtttattact----gttattctgaatc-tataactaaataagttaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccattagtattctagtgggcatgcctgttcgagcgtcatttcaacccttaagcccctgttgcttagcgttgggagcctacagcc--ttctgtagctccccaaagttagtggcggagtcggtttacactctagacgtagtaaattttatctcgtctgc---agttaagccggtccctcgccgtaaaaccccccaattttta-aa-gg-ttgacctcggatcaggtaggaatacccgctgaacttaa----------------------------------------
	Diaporthe_oxe_KC343165             ----------------------------------------------------------aacaaggtctccgttggtgaaccagcggagggatcattgctggaacgcgcttcggcgcacccagaaaccctttgtgaacttatacctattgttg-cctcggc-----------------gtcaggc---------------cggcctcttcactgaggccccccggagac---ggggagc-agcccgccggcggccaagttaactcttgtttttacactgaaactctgagaaaa-aaaacataaatgaatcaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggagggcatgcctgttcgagcgtcatttcaaccctcaagcc----tggcttggtgatggggcactgcctgtaaaagggcaggccctgaaatctagtggc-gagctcgccaggaccccgagcgtagtag-ttatatctcgctttggaaggccctggtggtgccctgccgttaaacccccaacttctgaaaa---tttgacctcggatcaggtaggaatacccgctgaacttaagcata-----------------------------------

;



END;

BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1 -  712;

END;

BEGIN TREES;
	Title 'Trees from "Fungal Planet 338 Emarcea eucalyptigena CPC24914.nexus"';
	LINK Taxa = Taxa;
	TRANSLATE
[0] 		1 Emarcea_eucalyptigena_CPC_24914,
[1] 		2 Emarcea_castanopsidicola_AY603496,
[2] 		3 Anthostomella_proteae_EU552101,
[3] 		4 Xylaria_ianthinovelutina_JQ936302,
[4] 		5 Xylaria_juruensis_GU322439,
[5] 		6 Xylaria_laevis_GU324747,
[6] 		7 Xylaria_polymorpha_AB274817,
[7] 		8 Xylaria_grammica_AB625414,
[8] 		9 Diaporthe_oxe_KC343165;
	TREE Fungal_Planet_338_Emarcea_eucalyptigena = ((((1:51,2:50):41,3:82):111,(((4:10,5:12):12,(6:8,7:6):13):12,8:23):164):0.0,9:0.0);

END;


BEGIN SETS;
	CHARSET ITS   =   70 -  672;

	TAXSET outgroups  =  9;

END;

BEGIN CODONS;
	CODESET * UNTITLED   =  universal:  1 -  712;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Jukes-Cantor':  1 -  712;
END;

Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		timeSaved 1435243167281;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			setID 0 3124758982156061088;
		endTell;
		getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
		tell It;
			setID 0 8359801077072436545;
			mqVersion 302;
			checksumv 0 3 4086975725 null  getNumChars 712 numChars 712 getNumTaxa 9 numTaxa 9   short true   bits 1152921504606846991   states 15   sumSquaresStatesOnly 114143.0 sumSquares -2.2481969339833516E21 longCompressibleToShort false usingShortMatrix true   NumFiles 1 NumMatrices 1;
			mqVersion;
		endTell;
		getWindow;
		tell It;
			suppress;
			setResourcesState false false 354;
			setPopoutState 400;
			setExplanationSize 0;
			setAnnotationSize 0;
			setFontIncAnnot 0;
			setFontIncExp 0;
			setSize 1466 588;
			setLocation 8 22;
			setFont SanSerif;
			setFontSize 10;
			getToolPalette;
			tell It;
			endTell;
			desuppress;
		endTell;
		getEmployee  #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			showTaxa #3124758982156061088 #mesquite.lists.TaxonList.TaxonList;
			tell It;
				setTaxa #3124758982156061088;
				getWindow;
				tell It;
					newAssistant  #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					setSize 1112 516;
					setLocation 8 22;
					setFont SanSerif;
					setFontSize 10;
					getToolPalette;
					tell It;
						setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam;
					endTell;
					setActive;
				endTell;
				showWindow;
				getEmployee #mesquite.lists.ColorTaxon.ColorTaxon;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel;
				tell It;
					togglePanel off;
				endTell;
			endTell;
		endTell;
		endTell;
end;