#NEXUS [written Thu Jun 25 16:38:26 CEST 2015 by Mesquite version 3.02 (build 681) at mdk-crou-001.cbs-niob.local/10.136.73.55] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=14; TAXLABELS Brunneodinemasporium_brasiliense_JQ889272 Chloridium_virescens_JX684009 Codinaeopsis_gonytrichoides_AF178556 Codinaea_acaciae_CPC_24912 Dinemasporium_longicapillatum_AB900868 Dinemasporium_pseudostrigosum_JQ889278 Neopseudolachnella_acutispora_AB934065 Neopseudolachnella_magnispora_AB934066 Neopseudolachnella_uniseptata_AB934067 Pseudolachnea_fraxini_AB934069 Pseudolachnea_hispidula_AB934072 Pseudolachnella_brevicoronata_AB934076 Pseudolachnella_yakushimensis_AB934088 Infundibulomyces_cupulata_EF113976 ; END; BEGIN CHARACTERS; TITLE 'Matrix in file "Fungal Planet 323 Codinaea acaciae CPC24912.nexus"'; DIMENSIONS NCHAR=765; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Brunneodinemasporium_brasiliense_JQ889272 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------gcggagggatcattacaggactcgcaagactcccgtaa-accactgtgaaccttacctat-agtcgttgcctcggcgggtgtctctcc------tctccctcgcggggacgggaggcgtccaagcccgccggcggccacc-caactctgtctc-actgcgttggcatctccgagcaaaagacaaacgaatcaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccgccagcactctggcgggcatgcctgttcgagcgtcatttcaaccctcaggctct----gcctggcgttggggctcctgcttc------cgagcaggcccccaaagacagtggcgggtg--cgccccggaaccgaacgcagta-gttacttctcgttctggaa-ccgccgcgct-ctc-cggccgtaaaacaccc--catttttc-tcatggttgacctcggatcaggtaggaa-------------------------------------------------------- Chloridium_virescens_JX684009 --------------------------------------------------------------------------------------------------------------------------------------------------------------------tgcggagggatcattacaggactcgcaagactcctacaa---ccctgtgaacttcactataagcacgttgcttcggcgggtgtcgcggcgcgggtcttcccg-------caccggggcg-ctaagcccgccggcagcctactatactctgtttc-tctgcgttggcatctc-gagaa-aaaacaaacaagttaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgcgaattgcagaattccgtgagtcatcgaatctttgaacgcacattgcgcccgccagcattctggcgggcatgcctgttcgagcgtcatttcaaccctcaggccct----gcctggcgttggaggactgcgc---------acgcagcctcccaaagcgagcggcggcgg--cgccccgaaaccgaacgcagta-gttacctctcgttctgggt-ccgggtcgtt-gtc-ctgccggaaaaccccc--atctcatc--aatggttgacctcgaatcaggtaggaatacccgctgaacttaagcata----------------------------------- Codinaeopsis_gonytrichoides_AF178556 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------acaggactcgcaagactcccgta--accactgtgaactacctt------ttgttgcctcggcgggtgctccggg------ttc-----------tgccggggcg-ctacgcccgccggtggcccta-aactcttgtctc--gcgcgttggcatctccgagca-gactataacgagtcaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccgccagcactctggcgggcatgcctgtccgagcgtcatttcaaccctcaggcccc----gcctggcgttggagccctgcgc--------agtgcaggctcccaaagacagtggcgggcg--cgccccggaaccgagcgtagta--atctctctcgttctggtc-tggcggcgcg-ctc-cggccgtaaaaccccc--aactttt---cgtggttgacctcggatcaggttagaatacccgctgaacttaa?catatcaataagcggaagaaaagaaaccaacagggattg Codinaea_acaciae_CPC_24912 --------------------------------------------------------------------------------------------------------------------------------------------taacaaggtctccgttggtgaaccagcggagggatcattacaggactcgcaagactcccgtaa-accactgtgaacttacctaca-acccgttgcctcggcgggtgctccggg------cgtcttc--gggcgctccggggcgctccagcccgccggtggcccct-aaactctgtttttatatcgttggcatctccgagcagactataaacgagtcaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccgccagcactctggcgggcatgcctgtccgagcgtcatttcaaccctcaggcccc----gcctggcgttggagccctgcgc--------agcgcaggctcccaaagacagcggcgggcg--cgccccggaaccgagcgcagta-atgctttctcgttctggt--ccggcgcgcg-ctc-cggccgtaaaaccccc--aacttctttaagtggttgacctcggatcaggtaggaatacccgctgaacttaagcatatcaa------------------------------- Dinemasporium_longicapillatum_AB900868 -------------------------------------------------------------------------------------------------------------------------------------------------------------------ctgcggagggatcattacagga--cgtcatactcccgtaataccactgtgaatcttacctac-cgtcgttgcctcggcggggtctgt------------ccct-------------tcgg-gggcgcccgccggtggcccgc-atactctgtctc-agcgtgctggcatctccgagtacaatacaaacgagtcaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccgccagtatcctggcgggcatgcctgttcgagcgtcatttcaaccctcaagcccctgcggcttggtgttggaggcctgcgc--------accgcagcctcccaaagacagcggcgggcg--tggcctggcaccgaacgtagtagactctctctcgttcgcggt-ccagggcgcgtttc-cggccggtaaaccccc--atctttta--catggttgacctcggatcaggtaggaatacccgctgaacttaagcatatcaata----------------------------- Dinemasporium_pseudostrigosum_JQ889278 tgccctttgtacacaccgcccgtcgctactaccgattgaatggctcagtgaggcttccggactggcccagggaggccggcaacggccacccagggccggaaagctatccaaactcggtcatttagaggaagtaaaagtcgtaacaaggtctccgttggtgaaccagcggagggatcattacagga--cgtcatactcccgtaataccactgtgaatcttacctac-cgtcgttgcctcggcgtggcgctc------------cccg-------gggaaacccg-cggcgcccgccggcggcccgc-atactctgtttt-agaac-tacgcatctccgagtattatacaaacgagtcaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccgccagcatcctggcgggcatgcctgttcgagcgtcatttcaaccctcaagcccccgcggcttggtgttggggacctgcgc--------accgcagccccctaaagacagcggcgggcg--tggcctggcaccgaacgtagtagactctctctcgttcgcggc-ccagggcgcg-ctc-cggccggtaaaccccc--atctttta-caatggttgacctcggatcaggtaggaatacccgctgaacttaagcatatcaataagcggaggaaaagaaaccaacagggatt- Neopseudolachnella_acutispora_AB934065 -------------------------------------------------------------------------------------------------------------------------------------------------------------------ctgcggagggatcattataggactcgcaagactcccataa-accactgtgaacttaccta-----tcgttgcctcggcgggtgcgccgga------cgcccgc-------gtccggggcg-ctcagcccgccggcggccccc-ctactctggctc-actgcgttggcatctcagagga-tacacaaacgaatcaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccgccagcactctggcgggcatgcctgtccgagcgtcatttcaaccctcaggctcc----gcctggcgttggggctctgccgcta-----gcggcaggccctcaaagacagcggcgggag--cgccgtggaaccgaacgcagtagcttgcatctcgttctggaa-ccgcggcgcc-ctc-cggccgtaaaaccccccatatcttc---aatggttgacctcggatcaggtagggatacccgctgaacttaagcatatcaata----------------------------- Neopseudolachnella_magnispora_AB934066 -------------------------------------------------------------------------------------------------------------------------------------------------------------------ctgcggagggatcattacaggactcgcaagactcccgtaa-accactgtgaacctaccta-----tcgttgcctcggcgggtgccccgga------cgcccgc-------gtccggggcg-ctcagcccgccggcggccccc-ctactctggctc-actgcgttggcatctcagagga-tacacaaacgaatcaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccgccagcactctggcgggcatgcctgtccgagcgtcatttcaaccctcaggctcc----gcctggcgttggggctctgccgtcc-----gcggcaggccctcaaagacagcggcgggag--cgccgtggaaccgaacgcagtagcttgcatctcgttctggaa-ccgcggcgcc-ctc-cggccgtaaaaccccc--atctttc---aatggttgacctcggatcaggtagggatacccgctgaacttaagcatatcaata----------------------------- Neopseudolachnella_uniseptata_AB934067 -------------------------------------------------------------------------------------------------------------------------------------------------------------------ctgcggagggatcattataggactcgcaagactcccgtaa-accactgtgaacctaccca-----tcgttgcctcggcgggtgccccgga------cgctcgc-------gtccggggcg-ctcagcccgccggcgg-cccc-ttactctggctc-actgcgttggcatctcagagga-tacacaaacgaatcaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccgccagcactctggcgggcatgcctgtccgagcgtcatttcaaccctcaggctcc----gcctggcgttggggctctgccgtcc-----gcggcaggccctcaaagacagcggcgggag--cgccgtggaaccgaacgcagtagcttgcatctcgttctggaa-ccgcggcgcc-ctctttgccgtaaaacacccccaattttt---tatggttgacctcggatcaggtagggatacccgctgaacttaagcatatcaata----------------------------- Pseudolachnea_fraxini_AB934069 -------------------------------------------------------------------------------------------------------------------------------------------------------------------ctgcggagggatcattacagga--tgcaacactcccgta--accactgtgaacctacctac---cacgttgcctcggcgggtgct--ggc--------------------tcgcccagcg-ctccgcccgccggcggcctac--tactctgtctcatctgcgttggcatctccgagaa-aacacaaacgaatcaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccgccagcactctggcgggcatgcctgttcgagcgtcattacaaccctcaggccct----gcctggcgttggggccctgcgc---------ttgcaggccctcaaagacagcggcgggtg--cg-cccggaaccgaacgtagta-gcttactctcgttctggaa-ccgcggcgtg-ctc-cggccgtaaaaccccc--atcttac---gttagttgacctcggatcaggtaggaatacccgctgaacttaagcatatcaata----------------------------- Pseudolachnea_hispidula_AB934072 -------------------------------------------------------------------------------------------------------------------------------------------------------------------ctgcggagggatcattacagga--tgcaacactcccgta--accactgtgaacctacctac---cacgttgcctcggcgggtgct--ggc--------------------tcgcccagcg-ctccgcccgccggcggcctgc--aactctgtctcatctgcgttggcatctccgagaa-aacacaaacgaatcaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccgccagcactctggcgggcatgcctgttcgagcgtcattgcaaccctcaggccct----gcctggcgttggggccctgcgc---------ttgcaggccctcaaagacagcggcgggtg--cg-cccggaaccgaacgtagta-gctcactctcgttctggaa-ccgcggcgcg-ctc-cggccgtaaaacccccc-aactcac---gttagttgacctcggatcaggtaggaatacccgctgaacttaagcatatcaata----------------------------- Pseudolachnella_brevicoronata_AB934076 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tcccgta--accaccgtgaacctacctac--actcgttgcctcggcgggtgct--ggc------ccc------------gcgccagcg-ctccgcccgccggcggcgcac-cactcttgtctc-tctgcgttggcatctccgagga-agcacaaacgaatcaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccgccagcactctggcgggcatgcctgttcgagcgtcattacaaccctcaggccct----gcctggcgttggagccctgcgc---------gcgcaggctcccaaagacagcggcgggtg--cgacccgggaccgaacgcagta--cacactctcgttccggca-ccgcggcgct-ctc-cggccgtaaaaccccc--cacttct---gttcgttgacctcggatcaggtaggaatacccgctgaacttaagcatatcaata----------------------------- Pseudolachnella_yakushimensis_AB934088 -------------------------------------------------------------------------------------------------------------------------------------------------------------------ctgcggagggatcattacaggactcaca----tcccgtac-accaccgcgaacctacctac--catcgttgcctcggcgggcgcgctggc------tcc------------gcgccagcg-cgccgcccgccggcggcgcac-cactcttgtctc-tctgcgttggcatctccgagga-agcacaaacgaatcaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccgccagcactctggcgggcatgcctgttcgagcgtcattacacccctcaggccct----gcctggcgttggagccctgcgc---------gcgcaggctctcaaagacagcggcgggtg--cgacccgggaccgaacgcagta--cacactcccgttccggca-ccgcggcgcc-ctc-cggccgtaaaaccccc--cacttct---gttcgttgacctcggatcaggtaggaatacccgctgaacttaagcatatcaata----------------------------- Infundibulomyces_cupulata_EF113976 ----------------------------------------------------------------------------------------------------------------------------------gtaaaagtcgtaacaaggtctccgttggtgaaccagcggagggatcattacaggactcgcaagagctttgtaa-accaccgtgaacctacctac---aacgttgcctcggcgggggtta-----------------------------------aaccccccgccggcggcccac-agactatatctc---tgcgttggcatctcgaggaattatacaagcaagttaaaactttcaacaacggatctcttggctctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccgccggcactccggcgggcatgcctgtccgagcgtcattacaaccctcaggcccc----gcctggcgttgggagactacacgcccccgggccgtagctccccaaagacagcggcggcgggcgtccctcgcaccgagcgtagtagtttacacctcgctccggtcgtaggcgcctc-gtc-tgcccgtaaaacaccc--aactctcc--agtagttgacctcggatcaggtaggaatacccgctgaacttaag--------------------------------------- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 765; END; BEGIN TREES; Title 'Trees from "Fungal Planet 323 Codinaea acaciae CPC24912.nexus"'; LINK Taxa = Taxa; TRANSLATE [0] 1 Brunneodinemasporium_brasiliense_JQ889272, [1] 2 Chloridium_virescens_JX684009, [2] 3 Codinaeopsis_gonytrichoides_AF178556, [3] 4 Codinaea_acaciae_CPC_24912, [4] 5 Dinemasporium_longicapillatum_AB900868, [5] 6 Dinemasporium_pseudostrigosum_JQ889278, [6] 7 Neopseudolachnella_acutispora_AB934065, [7] 8 Neopseudolachnella_magnispora_AB934066, [8] 9 Neopseudolachnella_uniseptata_AB934067, [9] 10 Pseudolachnea_fraxini_AB934069, [10] 11 Pseudolachnea_hispidula_AB934072, [11] 12 Pseudolachnella_brevicoronata_AB934076, [12] 13 Pseudolachnella_yakushimensis_AB934088, [13] 14 Infundibulomyces_cupulata_EF113976; TREE Fungal_Planet_323_Codinaea_acaciae = ((((4:59,3:47):32,(((12:1,13:13):23,(10:4,11:4):13):13,((((7:9,8:3):3,9:8):32,1:35):19,2:58):17):40):58,(6:19,5:20):114):0.0,14:0.0); END; BEGIN SETS; CHARSET ITS = 196 - 709; TAXSET outgroups = 14; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 765; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 765; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1435243106629; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 725127077117549886; tell It; setDefaultOrder 9 10 1 0 12 11 6 7 8 4 5 2 3 13; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 9221398679454853981; mqVersion 302; checksumv 0 3 2765533410 null getNumChars 765 numChars 765 getNumTaxa 14 numTaxa 14 short true bits 1152921504606846991 states 15 sumSquaresStatesOnly 142473.0 sumSquares -3.594809251364149E21 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 354; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1527 702; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #725127077117549886 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #725127077117549886; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1173 630; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; endTell; end;