#NEXUS [written Wed Jul 01 12:46:06 CEST 2015 by Mesquite version 3.02 (build 681) at mdk-crou-001.cbs-niob.local/10.136.73.55] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=17; TAXLABELS Stachybotrys_albipes_AF081478 Stachybotrys_longispora_AF081471 Stachybotrys_theobromae_AF081479 Stachybotrys_sansevieriicola_KR476717 Stachybotrys_dichroa_AF081472 Stachybotrys_oenanthes_AF081473 Stachybotrys_longistipitata_AF081471 Stachybotrys_echinata_KC305341 Stachybotrys_microspora_AF081475 Stachybotrys_pallescens_KC305345 Stachybotrys_chartarum_KC305260 Stachybotrys_sansevieriae_KC305267 Stachybotrys_subreniformis_KC305344 Stachybotrys_aloeticola_KJ817888 Stachybotrys_eucylindrospora_AF081474 Stachybotrys_oleronensis_KF777192 Fusarium_sambucinum_KM231813 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=496; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Stachybotrys_albipes_AF081478 cccggcg-cgccctt---------------------aggggcttgcccggaaccaggcgcccgccggaggc----ccc-ccaaactcatgttttccccgccct-------------gtgcggttcgta---tcttctgagtg-gcaaacgcaaaaaaaaaaaataaatcaaaactttcaacaacggatctcttggctctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccgctagcactctagcgggcatgcctgtccgagcgtca-tttcaaccctcaggaccc--ctcttctaggaggg-gggcactggcgttggggatcggcccg--ccctggagcggcgccgtccccgaaatacagtggcggtctcgctgcagcctcccctgcgtagtag---cacacctcg-cactggagagcggcgc-ggccacgc-cg-- Stachybotrys_longispora_AF081471 cccggcg-cgccctctc-------------------gggggcttgcccggaaccaggcgcccgccggaga------cc-ccaaactcttgatttttcc-cgca--------------ctgcggcagta-aattctctgagtg-gcaaacgc--------aaaataaattaaaactttcaacaacggatctcttggctctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccgctagcactctagcgggcatgcctgtccgagcgtca-tttcaaccctcagacccc--cttcgg---------ggggactggcgttggggatcggcccg--cctcagcgcggtgccgtccccgaaatacagtggcggtctcgctgcagcctcccctgcgtagtag---cacacctcg-catcggagagcggtga-ggccacgc-cg-- Stachybotrys_theobromae_AF081479 cccggcgtcgtcctcccctcgcg-----------gggtgggcttgcccggaaccaggcgcccgccggagg------ccatcaaactcttgttttctccgcgct--------------ctgcggtagta---tcttctgagtg-gcaaacgc--------aaaataaatcaaaactttcaacaacggatctcttggctctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccgctagcactctagcgggcatgcctgtccgagcgtca-tttcaaccctcagcaccc--cctcctccgggaag-gggcgctggcgttggggatcggcccg--ccctggagcggcgccggccccgaaatacagtggcggtctcgctgcagcctcccctgcgtagtag---cacacctcg-caccggagagcggcgc-ggccacgc-cg-- Stachybotrys_sansevieriicola_KR476717 cccggcgtagccccctcctcccccccg-gggagcgggggggcctgcccggaaccaggcgcccgccggaggccccaacc-tcaaactcttgctcccgggccgcactcgcggcgaggggggaaaaaagta---tcttctgagtg-gcaaacgc--------acaataaatcaaaactttcaacaacggatctcttggctctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccgctagcactctagcgggcatgcctgtccgagcgtca-tttcaaccctcagcgcccccccgcg----------ggccgctggcgttggggatcggcccg-cccccga-gcggcgccggccccgaaatacagtggcggtctcgctgcagcctcccctgcgtagtag---cacacctcg-catcggagagcggcgc-ggccacgc-cg-- Stachybotrys_dichroa_AF081472 cccggct-ctcc-----------------------------ggagcccggaaccaggcgcccgccgaagg------cc-ccaaactct--tgtttta------------------------acagcag---tcttctgagtg-aaaaaaca---------aaataaatcaaaacttttaacaacggatctcttggctctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccgttagcattctagcgggcatgcctgtccgagcgtca-tttcaaccctcaggaccc--ccctt-cgcggggt-gggacctggcgttggggatcggcccg-cccccgt-gcggcgccgtccccgaaatccagtggcggtctcgctgcagcctctcttgcgtagtag--tacaacctcg-cactggagcgcagcgt-ggccacgc-cg-- Stachybotrys_oenanthes_AF081473 cccggct-cctc----------------------------gcgagcccggaaccaggcgcccgccggagg------tc-acaaactct--tgtttttt-----------------------acagcag---tcttctgagtgtacaaatac---------aaataaatcaaaacttttaacaacggatctcttggctctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccgttagcattctagcgggcatgcctgtccgagcgtca-tttcaaccctcaggaccc--ccctttcgcggggt-gggacctggcgttggggatcggcccg-cctccgc-gcggcgccggccccgaaatccagtggcggtctcgctgcagcctctcttgcgtagtag--tataacctcg-catcggagcgcggcgc-ggccacgc-cg-- Stachybotrys_longistipitata_AF081471 cccggcg-ccct-----------------------------cgggcccggaaccaggcgcccgccggaga------cc-ccaaactcca-tgtttta------------------------acgagta---tcgtctgagtg-gtataaac---------aaatacatcaaaacttttaacaacggatctcttggctctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccgtcagcattctggcgggcatgcctgtccgagcgtca-tttcaaccctcaggctcc--cccttccggggga--ggagcctggcgttggggatcggcccg-cccccgc-gcggagccgtccccgaaatctagtggcggtctcgctgcagcctcccctgcgtagtag-ttacaacctcg-caccggagcgcggcgc-ggccacgc-cg-- Stachybotrys_echinata_KC305341 cccggcc-ccct-----------------------------cgggcccggagtcaggcgcccgccggaga------cc-ccaaactctt-tgttttac-----------------------ttgagta---tcgtctgagtg-gtataaac---------aaatacatcaaaacttttaacaacggatctcttggctctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccgtcagcattctggcgggcatgcctgttcgagcgtca-tttcaaccctcaggaccc--ccctttcgcgggga-gggacctggcgttggggatcggcccg-cccccgtggcggcgccgtccccgaaatctagtggcggtctcgctgcagcctcccctgcgtagtag-ttacaacctcg-catcggagcgcggcgc-ggccacgc-cg-- Stachybotrys_microspora_AF081475 cccggcg-ccct------------------------------gagcccggaaccaggcgcccgccggaga------cc-acaaactcttctgtattttcagc-------------------accagtattttcctctgagtg-gcaaacgc------aaaaaatcaatcaaaacttttaacaacggatctcttggctctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccgttagcattctagcgggcatgcctgtccgagcgtca-tttcaaccctcagggctc--cctttagggggag-----acctggtgttggggatcggcccg--cccagc-gcggcgccgtcccccaaattcagtggcggtctcgctgcagcctcccctgcgtagtag-tttacacctcg-caccggagcgcggcta-ggccacgc-cg-- Stachybotrys_pallescens_KC305345 cccggcg-ccct------------------------------gcgcccggatccaggcgcccgccggaga------cc-ccaaactcttgtgtttttt------------------------tcagta---ttctctgagtg-gcaaacgc-------aaaaataaatcaaaacttttaacaacggatctcttggctctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccgttagcattctagcgggcatgcctgtccgagcgtca-tttcaaccctcagggtcc--ccgttccggcggg---gaacctggtgttggggatcggcccg--ccccgc-gcggcgccgtcccccaaattcagtggcggtctcgctgcagcctcccctgcgtagtag-ttacaacctcg-catcggagctcagcgc-ggccacgc-cg-- Stachybotrys_chartarum_KC305260 cccggcg-ccct------------------------------gcgcccggatccaggcgcccgccggaga------cc-ccaaactcttgtgtttttt------------------------tcagta---ttctctgagtg-gcaaacgc-------aaaaataaatcaaaacttttaacaacggatctcttggctctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccgttagcattctagcgggcatgcctgtccgagcgtca-tttcaaccctcagggtcc--ccgttccggcggg---gaacctggtgttggggatcggcccg--ccccgt-gcggcgccgtcccccaaattcagtggcggtctcgctgcagcctcccctgcgtagtag-ttacaacctcg-catcggagctcagcgc-ggccacgc-cg-- Stachybotrys_sansevieriae_KC305267 cccggcg-ccct------------------------------gcgcccggatccaggcgcccgccggaga------cc-ccaaactcttgtgtttttt------------------------tcagta---ttctctgagtg-gcaaacgc-------aaaaataaatcaaaacttttaacaacggatctcttggctctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccgttagcattctagcgggcatgcctgtccgagcgtca-tttcaaccctcagggtcc--ccgttccggcggg---gaacctggtgttggggatcggcccg--ccccgc-gcggcgccgtcccccaaattcagtggcggtctcgctgcagcctcccctgcgtagtag-ttacaacctcg-catcggagctcagcgc-ggccacgc-cg-- Stachybotrys_subreniformis_KC305344 cccggct-cccc------------------------------gagcccggacccaggcgcccgccggaga------cc-ccaaactcttgtatttgtt------------------------tcagta-ttttctctgagtg-gcaaacgc------aaaaaataaatcaaaacttttaacaacggatctcttggctctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccgttagcattctagcgggcatgcctgtccgagcgtca-tttcaaccctcagggtcc--ccgtctcggcggg---gaacctggtgttggggatcggcccg--ccccgc-gcggcgccgtcccccaaacctagtggcggtctcgctgcagcctcccctgcgtagtagtttacaacctcg-caccggagcgcggcgc-ggccacgc-cg-- Stachybotrys_aloeticola_KJ817888 cccggag-cccc------------------------------gtgcccggacccaggcgcccgccggaga------cc-ccaaactccactgtatctt-----------------------cagcgtattctcctctgagtg-gcaaacgc--------acaatcaatcaaaacttttaacaacggatctcttggctctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccgccagcactctggcgggcatgcctgtccgagcgtca-tttcaaccctcagggccc--ccctcgcggg-----gggacctggcgttggggatcggcccg--cctcgc-gcggcgccgtcccccaaatacagtggcggtcccgccgcagcctcccctgcgtagtag-ctaacacctcg-caccggagcgcggcgc-ggccacgctcg-- Stachybotrys_eucylindrospora_AF081474 cccggct-----------------------------------cagcccggaaccaggcgcccgccgagga------cc-cccaaactca-tgttttct-----------------------tacagtt--tttttctgagtg-gcaaacgc--------aaaataaattaaaacttttaacaacggatctcttggctctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccgccagcattctggcgggcatgcctgtccgagcgtca-tttcaaccctcagggtccctccgcctcgcgcggtcggagcctggtgttggggatcggcccg-cccccgc-gcggcgccgtcccccaaatacagtggcggtcccgccgcagcctcccctgcgcagtag-ttatcaactcg-cactggagcgcggcgc-ggccacgc-cg-- Stachybotrys_oleronensis_KF777192 cccggcc-----------------------------------cagcccggaaccaggcgcccgccgagga------cc-ccctaaacca-tgtttcct------------------------acagtt---tcttctgagtg-gcaaacgc--------aaaataaattaaaacttttaacaacggatctcttggctctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccgccggcattccggcgggcatgcctgtccgagcgtca-tttcaaccctcagggtccctccgcccagcgcggaggggccctggtgttggggatcggcccg--ccccgc-gcggcgccgtcccctaaattcagtggcggtcccgccgcagcctcccctgcgcagtag-ttaccaactcg-cactggagcgcggcgc-ggccacgc-cg-- Fusarium_sambucinum_KM231813 cccgttc--------------------------------------ctcggaacg----gcccgccgcagg-----acc-ctaaactctgtttttagtg----------------------------ga---acttctgagta-----------aaaaaacaaataaatcaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcaaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccgccagtattctggcgggcatgcctgttcgagcgtca-tttcaaccctcaagccca--------------------gcttggtgttgggagctgtcgtc-------------tgacactccccaaatacattggcggtcacgtcg-agcttccatagcgtagtaa-tttacacatcgttactggtaatcgtcgc-ggccacgc-cg-- ; END; Begin paup; log file = ITSFP.log start append; factory; set criterion = parsimony storetreewts = yes maxtrees = 1000 increase = no storebrlens = yes; ; END; Begin paup; hsearch swap = TBR nreps = 1000; showtree; outgroup CBS146.95; roottrees outroot = monophyl rootmethod = outgroup; pscores . / ci = yes tl = yes ri = yes hi = yes rc = yes; showtree; savetree file = ITSFP.tre format = altnexus brlens = yes root = yes; contree; showtree; bootstrap nreps = 10000 search = faststep; savetrees file = ITSFPboot.tre format = altnexus maxdecimals = 0 savebootp = both from = 1 to = 1000; log stop; END; BEGIN TREES; Title 'Trees from "Fungal Planet 320 Stachybotrys sansevieriicola.nex"'; LINK Taxa = Taxa; TRANSLATE [0] n0 Stachybotrys_albipes_AF081478, [1] n1 Stachybotrys_longispora_AF081471, [2] n2 Stachybotrys_theobromae_AF081479, [3] n3 Stachybotrys_sansevieriicola_KR476717, [4] n4 Stachybotrys_dichroa_AF081472, [5] n5 Stachybotrys_oenanthes_AF081473, [6] n6 Stachybotrys_longistipitata_AF081471, [7] n7 Stachybotrys_echinata_KC305341, [8] n8 Stachybotrys_microspora_AF081475, [9] n9 Stachybotrys_pallescens_KC305345, [10] n10 Stachybotrys_chartarum_KC305260, [11] n11 Stachybotrys_sansevieriae_KC305267, [12] n12 Stachybotrys_subreniformis_KC305344, [13] n13 Stachybotrys_aloeticola_KJ817888, [14] n14 Stachybotrys_eucylindrospora_AF081474, [15] n15 Stachybotrys_oleronensis_KF777192, [16] n16 Fusarium_sambucinum_KM231813; TREE Fungal_Planet_320_Stachybotrys_sansevieriicola = ((((((n0:23,(n1:19,(n2:18,n3:57):14):18):40,((n4:11,n5:12):11,(n6:10,n7:11):11):10):9,(n8:20,((n9:0.0,n10:1,n11:0.0):9,n12:9):8):10):12,n13:17):16,(n14:11,n15:9):18):31,n16:78):0.0; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 496; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 496; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 496; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1435747566498; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6853908812142444749; tell It; setDefaultOrder 0 4 11 15 2 7 5 13 6 9 12 14 10 1 3 8 16; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 328430200440592572; mqVersion 302; checksumv 0 3 278559927 null getNumChars 496 numChars 496 getNumTaxa 17 numTaxa 17 short true bits 1152921504606846991 states 15 sumSquaresStatesOnly 131524.0 sumSquares -3.6201735244654995E21 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 354; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1465 556; setLocation 789 702; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #6853908812142444749 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #6853908812142444749; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; getTable; tell It; rowNamesWidth 397; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1111 484; setLocation 789 702; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #6853908812142444749 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 892.1435746767562.5619139489180079709; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1111 484; setLocation 789 702; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter off; toggleEven off; setFixedTaxonDistance 0; endTell; setEdgeWidth 6; orientRight; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '((((((1:23,(2:19,(3:18,4:57):14):18):40,((5:11,6:12):11,(7:10,8:11):11):10):9,(9:20,((10:0.0,11:1,12:0.0):9,13:9):8):10):12,14:17):16,(15:11,16:9):18):31,17:78):0.0;'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;