#NEXUS [written Sat Apr 25 20:54:26 EDT 2015 by Mesquite version 2.75 (build 566) at Macintosh-99.local/10.0.1.3] BEGIN TAXA; Title COP9_AT4G14110_v1.3_wtree.nex; DIMENSIONS NTAX=78; TAXLABELS Adiantum_aleuticum_WCLG Adiantum_raddianum_BMJR Alsophila_spinulosa_GANB Amborella_trichopoda_scaffold00017.199 Anemia_tomentosa_CQPW Angiopteris_evecta_NHCM Aquilegia_coerula_Aquca_00160.1 Arabidopsis_thaliana_AT4G14110 Argyrochosma_nivea_XDDT Asplenium_nidus_PSKY Asplenium_platyneuron_KJZG Athyrium_filixfemina_URCP Athyrium_sp_AFPO Azolla_caroliniana_cf_CVEG Blechnum_spicant_VITX Bolbitis_repanda_JBLI Botrypus_virginianus_BEGM Cedrus_libani_GGEA Crepidomanes_venosum_TWFZ Cryptogramma_acrostichoides_WQML Culcita_macrocarpa_PNZO Cystopteris_fragilis_LHLE Cystopteris_protrusa_YOWV Cystopteris_reevesiana_RICC Cystopteris_sp_XXHP Cystopteris_utahensis_HNDZ Davallia_fejeensis_OQWW Dennstaedtia_davallioides_MTGC Deparia_lobatocrenata_FCHS Didymochlaena_truncatula_RFRB Diplazium_wichurae_UFJN Dipteris_conjugata_MEKP Encephalartos_barteri_GNQG Equisetum_diffusum_CAPN Equisetum_hyemale_JVSZ Gaga_arizonica_DCDT Ginkgo_biloba_SGTW Gymnocarpium_dryopteris_HEGQ Homalosorus_pycnocarpos_OCZL Hymenophyllum_bivalve_QIAD Leucostegia_immersa_WGTU Lindsaea_linearis_NOKI Lindsaea_microphylla_YIXP Lygodium_japonicum_PBUU Myriopteris_rufa_GSXD Nephrolepis_exaltata_NWWI Notholaena_montieliae_YCKE Onoclea_sensibilis_HTFH Ophioglossum_petiolatum_WTJG Ophioglossum_sp_QHVS Osmunda_javanica_VIBO Osmunda_sp_UOMY Parahemionitis_cordata_ZXJO Phlebodium_pseudoaureum_ZQYU Phymatosorus_grossus_ORJE Pilularia_globulifera_KIIX Pityrogramma_trifoliata_UJTT Plagiogyria_japonica_UWOD Pleopeltis_polypodioides_UJWU Polypodium_amorphum_YLJA Polypodium_glycyrrhiza_CJNT Polypodium_hesperium_B_IXLH Polypodium_hesperium_GYFU Polystichum_acrostichoides_FQGQ Psilotum_nudum_QVMR Pteridium_aquilinum_Contig3446 Pteris_ensiformis_FLTD Pteris_vittata_POPJ Sceptridium_dissectum_EEAQ Sticherus_lobatus_XDVM Thelypteris_acuminata_MROH Thyrsopteris_elegans_EWXK Tmesipteris_parva_ALVQ Vittaria_appalachiana_NDUV Vittaria_lineata_SKYV Woodsia_ilvensis_YQEC Woodsia_scopulina_YJJY Zea_mays_GRMZM2G107588_T01 ; END; BEGIN CHARACTERS; Title COP9_AT4G14110_v1.3_wtree.nex; DIMENSIONS NCHAR=762; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Adiantum_aleuticum_WCLG ------------------------------------------------------------------------------------------ATGGCTGTGACTGTGGAGGGGGTAGCCATGGCTGATCAA---------------CCC------GTGGACAGGAAGCTTGCCTCTTTACAAGAAGCTATCAACTCTGGCCGTTTCGAAGAACTTGCAAGCATGTGCGAAGCCCTCGAGCTGGAGCTTGCTGCAAAGGGAGTGGAAAAGCCCTCTGATTGGCCATATGCTATTCATTTGCTTGGGCACATCTTCATTTCTGACTTGAACGGTGCAAGATTCTTATGGAAGCGCATACCAGCAGCTGTTAAACAAAATCAGCCTGAATTA?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????------???????????????????????????????????????????????????????????????????????????????????? Adiantum_raddianum_BMJR ------------------------------------------------------------------------------------------ATGGCTGTGACTGTGGATGGGGTACGCATGGCTGATCAA---------------CCACAAACCGTTGAAAGGAAGCTTGCCTCTTTACAAGAAGCTATCAACTATGGTCGTTTCGAAGACGTCGCAAGCATGTGCGAAGCTCTCGAGCTGGAGCTTGCTGCAAAGGGCCTGGAAAAGCCCTCCGATTGGCCATATGCTATTCATTTGCTTGGACACATCCTCATTTCTGACTTGAATGGTTCAAGATTTTTATGGAAGCGCATACCGGAAGCTGTTAAACAAAGCCAACCTGAGTTAGTAGCAGCATGGAAAATTGGGCAATGCCTGTGGACATATGATTATGCAGCTGTTCATGACGCTCTTCGATGCTATTCTTGGAGCCCTGCAGTTCAGAAAATTGTGATTGCCATAAAAGATGATTTTTCACGAAAGACGTTGAAATTGCTTTCAACAGCTTATTCCACTATCAGTGTTGCTGATGCGGCCAAGTTCTTGGGGTTGACGGAGAGTGAGACCGTGAAAAGTATCACCCAGAAT---GGATGGACATTGGATCCTGCTTCCAACATGCTTACCGTTCTG------CCTACAGCAAACTTGGGAGCACAGAAACTAGATTCAAGCAAGCTACAGGATTTGACGGAGTACATTTTCCACCTTGAGCACTAA Alsophila_spinulosa_GANB ------------------------------------------------------------------------------------------ATGGCTGTGACTGTGGATGCTGCACCCATGCCTGATCAG---------------CAACAG---GTTGCTAAGAAGCTCAGCTCACTGCAGGAGGCCATCAATTCTGGCCGTTTCGAGGAGATCGGAAGCCTGTGCGACGCCCTCGAACTCGAGCTTGCTGCCAAGGGATTGGAAAAGCCAGGCGATTGGCCTTACACTGTCCATTTACTTGGACATATCTACATTTCTGATCTGAATAGCGCAAGGTTTTTGTGGAAGCGTATACCTGAGACTGTCAAACAAAGCCAACCTGAAGTGGTTGCTGCATGGAAGATTGGGCAATGCTTGTGGACCTATGACTATGCTGGTGTTCACGATGCTCTCCAAAGCTACACTTGGAGCCCGGCTGTCCAACAAGTCATAACTGCCTTTCGAGAGGATTATTTGATGAAAAATATGAAGTTGCTATCTACGGCCTACTCAACTATCAGTGTCAGTGATGCTGCAAAGTGTTTGGGGTTAACAGAGGCCGAGACTATCAAATGCACTACCCAAGAA---GGATGGATGTTGGATCCCACTTCAAATATGCTTACTGTTCAG------CCTGCAATAACTGTGGCAGCCCAAAAGCTGGATTCTAGCAAGCTACAAAACTTGACAGAGTATGTCTTTCATCTTGAACATTGA Amborella_trichopoda_scaffold00017.199 ---------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGACTTGACTCTCCTCAAGGAGGCCATTGCCTCCAAATCATATGATCAAGTTGCAGATATCTGTGATGAACTCGAGCTCCAGTTTGCCGCTCGAGGAGTTAATTATCAGAATGAATGGCCATATGCAATCCATCTTCTAGGGCATATTTATGTACAAGACATTAACAATGCAAGATTTATTTGGAAACGGACTCCATCAGCAATCAAAGAAAGCCAGCCTGAGGTTGTTGCAGTGTGGAAGATAGGCCAGTGCTTATGGACGCATGACTATGCTGGTGTACACGATGCAATTCGTGGATTTGATTGGAGTGCAGAAGTTAAGGATCTTGTCAGTGCATTTTCAGAGAGTTATACTAAGAGAATGTTCGATTTACTCTCATCTGCATATTCTACAATAACTGTGGCTGATGTTACTAAATTTCTTGGACTCAGTGAGGAAGGTGTCACAAACTATGCACTGCAGCAT---GGTTGGACCATTGATCCAGAATCGAAGATGCTCACGGTTAGA------AAGATGCCGAAAGTTGTCCAACAGAAACTTGATCCTAGCAAATTGCAGAACTTGACAGAATATGTTTTCCACCTTGAGCATTGA Anemia_tomentosa_CQPW ------------------------------------------------------------------------------------------???????????????????????????????????????---------------???????????????????????????????????????????????????????????????????????????????????????????????????ATTGCTGCAAAGGGTTTAGAGAAGCCAGATGATTGGCCGTACGCCTTGCACTTGCTTGGGCATATTTACATCTCGGACCTGAATAGCGCAAGATTTCTATGGAAGCGGTTACCTGGAAGCGTTAAAGAAAGCCACCCTGAGCTGGGTGCAGCATGGAAAATTGGGCAATGTATGTGGAAGTATGACCATGCAGGCGTTCATGAAGCTCTTCGAAGCTACAATTGGAGTCCGGCAGTTCAAC????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????------???????????????????????????????????????????????????????????????????????????????????? Angiopteris_evecta_NHCM ---------------------------------------------------GTTGTAGACAGCGCAACTTTGCAGCAGCAGCAACAGCAA------------------------------------------------------CAGCAACAGGGGGAGCTGAGTCTCAGTTTGTTGCATGATGCTATTGCCACACGACGCTATGCTGACATTGCAGATGTCTGTGATACCCTTGAGCTGGAATTAGCTGCCAAAGGAGCTGGAAAGCCAGATGATTGGCCTTATTCTATTCATTTACTCGGGCATATCTTTAATTCGGATCTGAACAGCGCCAGATTTTTATGGAAGCGCACACCTGCTACAGTGAAGCAGAGTCAGCCAGAGTTGGTTGCTGTGTGGAAGATAGGACAGTGTATGTGGACATATGACCATGCTGGTGTGCATGAGGCATTTCGTAGCTACAGTTGGAGCCCAGCAGTCCAGCCAGTTGTAGCAGTGGTTGCAGATGACTATTCAAAGAAGATCTTCAGGCTGCTGTCCACAGCCTATTCTACAATTAGTGTCAGTGATGCAGCCAGGTGTTTGGGTTTGACAGAGGATGAAGCTGTCCAATGCACTTTGCAACAG---GGCTGGACTTTGGAATCAGTCTCAAAGATGCTGACTGTGAAT------TCAATTGCTCTAGTTGCAGAGCAGAAGTCCGACCCCAGTAAGCTGCAAAATTTGACAGAATATGTTTTCCACTTGGAACACTGA Aquilegia_coerula_Aquca_00160.1 ---------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGATTTCTCTCTTCTGAAAGAAGCAATGGAATCAAATTCGTTCGAAAAGATTGCTGATATTTGTGATCAACTTATGCTTCAGGTTTCAGCACAAGGAATCAAGTTTGAAGAAGACTGGCCTTATACAATTCATCTTCTAGGTCATCTTTACGTTAATGATGTTAATAGTGCACGCTTTTTATGGAAAACTATACCCTCTGTGGTTAAAGAGAAACAGCCGGAAGTGGTGGCAGTTTGGAAAATTGGTCAGCAACTTTGGATGAGGAATTATTCTGGGGTTCATGAGGCGATTCGTGGGTTTGATTGGAGTCCTCAAACTCAAGGTCTAATCACTGCATTCTCAGAGCTCTACACGAACAAGATGTTCCACCTACTTTTGTCTGCATATTCAACCATCACCGTTGGAGACACAGCTCTGTTTCTTGGAATGAGTGAAGAAAATGCCACCAACTATGCACTACAGCGA---GGCTGGACTATTGATTCTGTATCTGGAATGCTGACGGTGAAG------AAACAACCTATTGTGACTGAGCAGAAGCTAGATCCCAGTAAATTACAACGCTTGACTGAATATGTGTTTCATCTCGAGCATTGA Arabidopsis_thaliana_AT4G14110 ---------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGATCTTTCGCCTGTTAAGGAAGCTTTGGCCGCCAAATCCTTTGACAAAATCGCCGATATCTGCGATACTCTCATGCTTCAGGTTGCTTCCGAAGGAATTGAATATCATGATGATTGGCCTTACGCAATCCATCTTCTGGGTTACTTTTACGTTGACGATTGTGATAGCGCACGTTTCCTCTGGAAAAGGATACCTACAGCTATCAAGGAGAGGAAGCCTGAAGTTGTTGCAGCTTGGGGGATTGGTCAGAAGCTGTGGACACACGACTATGCAGGTGTATATGAAGCTATTCGGGGTTATGATTGGAGTCAAGAAGCTAAAGATATGGTTGCTGCCTTCTCAGATCTTTACACAAAAAGGATGTTTCAGCTTTTGTTGTCTGCCTACTCCACAATTACCATCCATGATTTAGCTCTTTTCCTAGGGATGACGGAGGATGATGCCACAACTTATGTTGTAGAGAAT---GGATGGACAGTGGATGCAGCTTCTCAAATGGCGAGTGTGAAG------AAACAAGCTGTTAAAAGAGAGCAAAAGGTGGATTCATCGAAGCTACAACGCTTGACGGAGTATGTGTTCCACCTTGAACATTA? Argyrochosma_nivea_XDDT ------------------------------------------------------------------------------------------CAAGGGATGACCATCGCTGTGACTGCCATGGCTGATCAA---------------CCAGAAGACGGGGAAAGGAAACTTGCCTCTTTACAAGAAGCTATCAAATCTGGTCGTTTCGAAGTTCTTGCAAGCATGTGTGAAGCCCTCGAGCTGGAGCTTGCTGCAAAGGGACTCGAAAAGCCCTCGGAATGGCCGTATGCTATTCATTTGCTTGGACACATCTTCATTTCTGACTTGAATGGTGCAAGATTTTTGTGGAAGCGTATACCGGCAGCCGTCAAACAAAGCCAACCGGAACTAGTCGCTGCATGGAAGATTGGCCAGTGCCTATGGACATATGATTATGCAGGTGTCCACGACGCTTTTCGATGCTACTCTTGGAGCCCTGCTGTTCAGCAACTTGTGAATGCCTTAAAAGATGATTATTCACGGAAGAACTTGAAATTGCTCTCAACCGCTTATTCCACTATTAGTGTCGCTGATGCAGCTAAGTTCTTGGGGCTGACAGAGAGTGAGACTGTCAAAAGTACCACGCAAAAT---GGATGGGCATTGGATCATGCTTCAGACATGCTTACCGTTGGG------CCTGTGGTGAACGTGGCAGCTCAGAAATTAGATTCAAGCAAGCTACAAGATTTGACAGAGTACGTCTTCCATCTTGAACATTAA Asplenium_nidus_PSKY ------------------------------------------------------------------------------------------???????????????????????????????????????---------------??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GCAAGATTTTTGTGGAAGCGTGTACCATCAMCTGTAAAACAGAGCCAGCCTGAACTGGTTGCAGCATGGAAGATCGGGCAGTGCTTGTGGACGTATGATTATGCAGGTGTTCATGATGCTCTACAAGGTTACAACTGGAGCCCAGACATTCGCCGTATTGTGGTTGCCATTAAAGATGATTACTCGAGCAAGAATCTGAAGCTTCTTTCTACGGCTTACTCGACCATCGGTGTGGCCGATGCTGCCAAATTCCTCGGGCTGACAGAGGACGAGACCATCAAATGCACTACGGAAAAG---GGATGGACGTTGGATCCTGTTTCGAACATGCTGACAGTTCAG------CAGGCCGTAACGGCGGCATCTCAGAAGCTGGATGCCAGCATGCTCCAAAGCTTGACCGAGTACGTCTTCCATCTGGAGCATTAA Asplenium_platyneuron_KJZG ------------------------------------------------------------------------------------------ATGGCCGTTACAGTGGAAGGTGTGAGCATAGCGGATCAG---------------CAGCAAGCTGTGGAGAAGAAACTGGTCTCTTTGCACGAAGCCATCAATGCAGGCCGTTTCTCTGAGCTTGCAGGTTTATGCGAGGCCCTTGAACTCGAGTTTGCTGCCAAGGGAATGGAAAAGCCTTCTGATTGGCCCTATGTTATTCATCTGCTCGGACATATCTACATCTCCGACTTGAATAGTGCAAGATTTTTGTGGAAGCGTGTACCGGCAGCTGTAAAACAGAGCGAAGCTGAACTGGTTGCAGCTTGGAAGATTGGGCAGTGCTTGTGGACGTATGATTATGCGGGTGTTCATGATGCTCTCCAAGGTTACAGCTGGAGCCCAGATGTTCGCCGTATTGTGGCTGCCATTAAAGATGATTACTCAAGCAAGAATCTTAAGCTGCTTTCTACAGCTTACTCAACCATTGGTGTGGCTGATGCTGCTAAATTTTTAGGGCTGACAGAGGCCGAGACCATCAAATGCACTACAGAAAAC---GGATGGACGTTGGATCCTCTTTCAAACATGCTGACAGTTCAG------CGGGCTGTAACAACAGCATCTCAGAAGCTGGATGCCAGCAAGCTTCAAAGCTTGACGGAGTATGTCTTTCATCTGGAACATTAA Athyrium_filixfemina_URCP ------------------------------------------------------------------------------------------???????????????????????????????????????---------------???CAGGCTGTGGAGAAGAAGCTGGCCTCACTGCAAGAAGCCATCAATTCTGGCCGTCTCGCTGAGCTTGCAAGTTTATGCGAGGCCCTTGAACTCGAGCTTGCTGCGAAGGGAATGGAGAAGCCTTCTGATTGGCCTTATGCTATTCATCTGCTCGGACATATTTACATTTCTGACTTGAATAGTGCAAGATTTTTGTGGAAGCGTGTACCTGCAGCTGTAAAACAGAGCCAGCCTGAATTAGTTGCTGCATGGAAGATTGGGCAGTGCTTGTGGACCTATGATTATGCAGGTGTTCATGACGCTCTTCGAAGCTATTCTTGGAGCCCAGCTGTTCACCAAATTGTGACTGCCATAGGAGACGATTATTCACGGAAGAATTTGAAACTGCTTTCTACGGCTTACTCAACTATAAGCGTTGCTGATGCTGCTAAATTCCTAGGGCTAACGGATGCTGAGACCATCAAATGCACTACCCAAGAT---GGATGGACGTTGGATCCTGTTTCAAATATGCTAACAGTTCAG------CCTGCAATAACTATGGCATCTCAGAAGCTAGATGCGAGCAAGCTACAAAACTTGACGGAGTATGTCTTCCATCTTGAACATTAA Athyrium_sp_AFPO ------------------------------------------------------------------------------------ATGACCATGGCTGTGACAGTGGACGGGGTGGGCATGGCCGATCAT---------------CAGCAGGCTGTGGAGAAGAAGCTGGCCTCACTGCAAGAAGCCATCAATTCTGGCCGTCTCGCTGAGCTTGCAAGTTTATGCGAGGCCCTTGAACTCGAGCTTGCTGCGAAGGGAATGGAGAAGCCTTCTGATTGGCCTTATGCTATTCATCTGCTCGGACATATTTACATTTCTGACTTGAATAGTGCAAGATTTTTGTGGAAGCGTGTACCTGCAGCTGTAAAACAGAGCCAGCCTGAATTAGTTGCTGCATGGAAGATTGGGCAGTGCTTGTGGACCTATGATTATGCAGGTGTTCATGACGCTCTTCGAAGCTATTCTTGGAGCCCAGCTGTTCACCAAATTGTGACTGCCATAGGAGACGATTATTCACGGAAGAATTTGAAACTGCTTTCTACGGCTTACTCAACTATAAGCGTTGCTGATGCTGCTAAATTCCTAGGGCTAACGGATGCTGAGACCATCAAATGCACTACCCAAGAT---GGATGGACATTGGATCCTGTTTCAAATATGCTAACAGTTCAG------CCTGCAATAACTGTGGCATCTCAGAAGCTAGATGCGAGCAAGCTACAAAACTTGACGGAGTATGTCTTCCATCTTGAACATTAA Azolla_caroliniana_cf_CVEG ------------------------------------------------------------------------------------------ATGGCGTTCTCTGCAGACGGCGTCTTCACAGGC------------------------------------------CTCTCCGCAGTGCGAGACGCGATTGATTCATCACGGTTTACCGAGATCTCTGATCTCTGCGAGTCCCTCGAGCTCCAGCTTGCTGCTAAGGGTTTGGAGAAGCCTGATGATTGGCCTTATGCTATCCATTTGCTTGGATTTATCTATGTTTCTGATCTGAACAATGCTAGATTTTTGTGGAAACGTATACCTGGATCAATAAAACAGAACTGCCCGGAAGTAAGTGCTGTGTGGAAGATTGGACAATGCTTATGGACATACAATTATGCTGGTGTTCATGATGCACTTCAGAGTTATACGTGGAGCCCATATGTGCAAAGAATTGTGACTGCGTTTGGAGAGGAATATCGGAGAAAAAATATGAAGTTGTTGTCTACTGCATACTCAACTATAAGTGTTGCTGATGCTTCTAAGTTTCTTGGGCTAACAGAGGTTGAGACTGTGAAAT???????????????????????????????????????????????????????????------???????????????????????????????????????????????????????????????????????????????????? Blechnum_spicant_VITX ------------------------------------------------------------------------------------------ATGGCTGTGACAGTGGACGGGGTGGGCATGGCCGATCAT---------------CAGCAAGCCGTGGAGAAGAAGCTGGCCTCACTGCAAGAAGCCATCAATTCTGGCCGTCTCGCTGAGCTTGCAAGCTTATGCGAGGCCCTTGAACTCGAGCTTGCTGCGAAGGGAATGGAAAAGCCTTCTGATTGGCCTTATGCTATTCATCTGCTGGGACATATTTACATTTCTGACTTGAATAGTGCAAGATTTTTGTGGAAGCGTGCACCTGCAGCTGTAAAACAGAGCCAGCCTGAATTAGTCGCTGCATGGAAGATTGGGCAGTGCTTGTGGACCTATGATTATGCAGGTGTTCATGACGCTCTGCGAAGCTATTCTTGGAGCCCAGCTGTTCAACAAATTGTGACTGCCATAGGAGACGATTATTCACGGAAGAATTTGAAGCTGCTTTCTACGGCTTACTCAACTATAAGCGTTGCTGATGCTGCTAAAGTCCTTGGGCTTACGGATGCTGAGACGATCAAATGCACTACCCAAGAT---GGATGGACGTTGGATCCCGTTTCAAATATGCTAACAGTTCAG------CCTGCAATAAATGTGGCATCTCAGAAGCTAGATGCGAGCAAGCTACAAAACTTGACGGAGTATGTCTTCCATCTTGAACATTAA Bolbitis_repanda_JBLI ------------------------------------------------------------------------------------------ATGGCCGTGACTGTGGAGGGAGCGGTCGTGGCCGATCAG---------------CAGCAAGCTGTGGAGAAGAAGTTGGCCTCACTGCAAGAAGCGATTAACGGTGGTGGTTATGCTGAGCTTGCGAGCTTATGCGAGACCCTCGAACTTGAGATTGCTGCAAAGGGACTGGAAAAGCCTTCTGATTGGCCTTATGCTATTCATCTACTTGGACATATTTACATTTCTGACTTGAATAGTGCAAGATTTTTGTGGAAGCGTATACCTGCAGCTGTAAAACAGAGCCAGCCTGAATTAGTTGCCGCATGGAAGATTGGGCAGTGCTTGTGGACCTACGACTATGCAGGTGTTCATGATGCTCTTCGAAGCTATTCTTGGAGTCCAGCTGTTCAACAAATGGTTACTGCCATAGGAGAGGACTATTGTCGGAAGAATTTGAAGTTACTTTCTACTGCTTACTCAACTATAAGCGTTGCTGATGCTGCCAAATTCCTTGGGCTAACAGATGCCGAGACCATCAAATGCACTACTCAAGAATATGGATGGACACTGGATCCAGTTTCAAATATGCTCACAGTTCAG------CCGTCGACAACAGTGGCAGCTCAGAAGCTAGATGTGAGCAAGTTACAAAATTTGACGGAGTACGTCTTCCATCTTGAACATTAA Botrypus_virginianus_BEGM ATGCAATCTAGAGCTCTGTATATATTGTCTGTATCTTCTATTGTAGGTTACAGAGCCCACACTGAGCTTGACACACAGCTTCACCAAAGA------------------------------------------------------ATGCAGCAGGGAGAGGGCACCCTCAGTCTTCTGCATGATGCTATCAACTCGCGACGATTTGGAGACATCGCTGGCATCTGTGACAACTTGGAGCTTGAGTTGGCTGCCAAAGGAATCGCAAAGCCTGATGACTGGCCATATTCTATTCATCTACTTGGGCACATCTATGTTTCTGATCTAAACAGTGCCAGATTTCTATGGAAGCGCACGCCTGCTACTATAAAACAGAGTCAGCCAGAATGGCTTGCTGTTTGGAAGATAGGCCAGTGCATGTGGATGTATGACTATGCTGGTGTGCATAATGCTCTTCGTGGTTACAACTGGAGCCCAGAAGTGCAGCAGGTCGTAGCAGCTATAGCAGATGATTATTCAAAGAGAATCTTTAAGCTTCTCTCAACTGCCTATTCTACAATCAGTGTAGGTGATGCTGCAACATTTCTGGGTTTGACACAAAGTGAGACGGTTCAATGTGCCTTGCAACAG---GGCTGGACTTTGGATTCAACCTCTCAGATGTTGACTGTTCAA------CCAACTCCTTTAGTTATAGAACAGAAACTAGATTCTACCAAGCTGCAAAATCTGACAGAGTACGTTTTCCACTTGGAGCACTGA Cedrus_libani_GGEA ------------------------------------------------------------------------------------------------------------------------------------------------------------ATGACGGACTTGACGGAGCTCAAGCAAGCCATTGAATCCAACCAATATGACAAAATCGCAGATATCTGCGACGAGCTTCAACTCCAGTTGGCCGCTCAAGGCATCAAAGAGCCAGAAGGTTGGCCGTATTCCGTTCATCTGCTGGGACACATCTACATACAGGATATAAATAGTGCAAGATTTCTTTGGAAGCGCATGCCTTTGTCTGTGAAGGAGAGTCAGCCTGAAGTTGTTGCTGTGTGGAAGATAGGTCAGTGCATGTGGACACATGATTATGCAGGTATCCATGGAGCTCTTCATAGCTTCAATTGGAGTCCAGAAGTGCAGCAGATTATTACTGCATTATCTGATAGTTACACAAAAAGGGCTTTTGAGCTACTCTTGGCTGCATATTCCACAATAAGTGTGGGTGATACAGCACAGTTTTTGGGAATGTCCAAGGAGGATGCACTGACTTATACATTGCAACGA---GGTTGGACTCTTGATTCAGCATCACAGATGCTCACTGTAAAAAAATTGCCAGCAGTCGTGGACCAGAGACAGAGACTACATTCTAGTACACTTCAAAATTTAACAGAATATGTTTTCCACTTGGAGCATTGA Crepidomanes_venosum_TWFZ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTAGTGAAGCTGCCAAGTTCTTGGGACTGACAGAGGATGAGACTATTAGATGTACTATGCAAGAT---GGCTGGACTTTAGATTCTGTCTCAAATATGCTTATTGTTCAA------TCTGCAAATCCTGTAGCAGAACAGACATTAGATTCAAGCAACTTACAGAACTTAACGGAGTATGTCTTTCATTTAGAACATTGA Cryptogramma_acrostichoides_WQML ------------------------------------------------------------------------------------------ATGGCTGTAACTGCGGACGCGGTAGCCATGGCCAAT------------------CAGCAAGCGGCGGAAAGGCAGCTTGCCCGTCTACAAGAAGACATCAACTCTGGCCGGTTTGAAAAAATTGCAAGCTCGTGCGAAGCGCTAGAGCTAGAGCTTGCTGCAAAGGGGCTGGAAAAGCCCTCCGATTGGCCATATGTGATTCATTTGCTGGGACACGTTTACGATTCTGACTTGAATAATGCAAGGTTCTTATGGAAGCGTATACCTGGAACTGTCAAACTAAGCCAGCCTGAGTTAGTTGCTGCATGGAAGATTTGTCAGTGCTTGTGGATTTATAATTATGCAGGTGTTCACGAGGCTCTACAAGCCTATGCTTGGAGCCCTGCTGTTCAGAAAATGGTGACTGCGCTGAAAGATGATTATTTTTGTAAGAACTTGAAATTGCTGTCTACTGCCTATTCCACTATTAGCGTTGCTGATGCAGCCCAGTTCTTGGGTTTGACAGAGAATGAGACTATCAAAAATACCACCCAAAAT---GGATGGATACTGGATCCTGCTTCAAGCATGCTTACGGTTGTT------CCTGCAGTAAGCTTGGCAGCACAGAAACTAGATTCAAGCAAGCTACAAGATCTGACTGAGTACGTTTTTCACCTTGAACATTAA Culcita_macrocarpa_PNZO ------------------------------------------------------------------------------------------ATGGCTGTGACTGTGGATGGTGTACCCATGCCTGATCAA---------------CATCAACCGGTTGATACGAAGCTCAGTTCACTGCACGACGCTATCAATTCCGGCCGTTTTGGGGAGATCGGAAGCCTTTGCGAAGCCCTCGAACTTGAGCTTGCTGCCAAGGGATTAGAAAAGCCAGCGGATTGGCCTTATGCTCTCCATTTGCTTGGACATATCTACGTTTCTGATCTGAACAGTGCAAGGTTTTTGTGGAAGCGTATACCTGCAACTGTCAAACAAAGCCACCCTGAAGTAGTTGCTGCATGGAAGATTGGGCAATGCTTGTGGACCTATGACTATGCTGGTGTTCACGACGCTGTTCGAATCTACCCTTGGAGCCCAGCCGTCCAACAAGTCGTGACTGCCTTTGGAGAGGATTATTTAAGAAAAACTATGAAGTTGCTATCTACGGCTTACTCAACTATCAGTGTCGGTGATGCTGCTAAATTTTTGGGGTTAACAGAGGGTGAGACTATCAAATGCACTACCCAAGAA---GGATGGGCGTTGGAT------------------------------------------------------------------------------------------------------------------??? Cystopteris_fragilis_LHLE ------------------------------------------------------------------------------------------ATGGCTGTGAGCGTGGACGGGGTGGGCATGGCCGATCAG---------------CAGCAAGCTGTGGAGAAGAAGCTGGCCTCACTTCAAGAAGCCATCAATTCTGGCCGTTTCGCTGAGCTTGCAAGCTTATGCGAGGCCCTTGAACTCGAGATTGCAGCAAATGGAATGGAAAAGCCTTCTGATTGGCCTTATGCTATTCATCTGCTGGGACATATTTATATTTCTGACTTGAATAGTGCAAGATTTTTGTGGAAGCGTGTACCCGCAGCTGTAAAACAGAGCCAGCCTGAATTAGTTGCTGCATGGAAGATTGGGCAATGCTTGTGGACCTATGATTATGCAGGTGTCCACGATGCTCTTCGAAGCTATTCTTGGAGCCCAGCTGCTCGCGAAATTGTGACTGCCATAGGAGACGATTATTCACGAAAGAATTTGAAGTTGCTTTCTACGGCTTACTCAACGATAAGCGTTGCTGATGCTGCTAAATTCCTAGGGCTAGTGGATGCTGAGACCATCCGATGCACTACCCAAGAT---GGATGGACATTGGATCCCGTTTCAAATATGCTAACAGTTCAG------CCTGCAGTAACAGTGGCATCTCAGAAGCTAGATGCGAGCAAGTTACAAAACTTGACGGAGTATGTCTTCCATCTTGAACATTGA Cystopteris_protrusa_YOWV ------------------------------------------------------------------------------------------ATGGCTGTGAGCGTGGACGGGGTGGGCATGGCCGATCAG---------------CAGCAAGCTGTGGAGAAGAAGCTGGCCTCTCTTCAAGAAGCCATCAATTCTGGCCGTTTCACTGAGCTTGCAAGCTTATGCGAGGCCCTTGAACTCGAGATTGCAGCAAATGGAATGGAAAAGCCTTCTGATTGGCCTTATGCTATTCATCTGCTGGGACATATTTATATTTCTGACTTGAATAGTGCAAGATTTTTGTGGAAGCGTGTACCCGTAGCTGTAAAACAGAGCCAGCCTGAATTAGTTGCTGCATGGAAGATTGGGCAGTGCTTGTGGACCTATGATTATGCAGGTGTCCACGATGCTCTTCGAAGCTATTCTTGGAGCCCAGCTGTTCGCGAAATTGTGACTGCCATAGGAGACGATTATTCACGGAAGAATTTGAAG?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????------???????????????????????????????????????????????????????????????????????????????????? Cystopteris_reevesiana_RICC ------------------------------------------------------------------------------------------ATGGCTGTGAGCGTGGACGGGGTGGGCATGGCCGATCAG---------------CAGCAAGCTGTGGAGAAGAAGCTGGCCTCACTTCAAGAAGCCATCAATTCTGGCCGTTTCGCTGAGCTTGCAAGCTTATGCGAGGCCCTTGAACTCGAGATTGCAGCAAATGGAATGGAAAAGCCTTCTGATTGGCCTTATGCTATTCATCTGCTGGGACATATTTATATTTCTGACTTGAATAGTGCAAGATTTTTGTGGAAGCGTGTACCCGCAGCTGTAAAACAGAGCCAGCCTGAATTAGTTGCCGCATGGAAGATTGGGCAGTGCTTGTGGACCTATGATTATGCAGGTGTCCACGATGCTCTTCGAAGCTATTCTTGGAGCCCAGCTGCTCGCGAAATTGTGACTGCCATAGGAGACGATTATTCACGAAAGAATTTGAAGTTGCTTTCTACGGCTTACTCAACGATAAGCGTTGCTGATGCTGCTAAATTCCTAGGGCTAGTGGATGCTGAGACCATCCGATGCACTACCCAAGAT---GGATGGACATTGGATCCCGTTTCAAATATGCTAACAGTTCAG------CCTGCAGTAACAGTGGCATCTCAGAAGCTAGATGCGAGCAAGTTACAAAACTTGACGGAGTATGTCTTCCATCTTGAACATTGA Cystopteris_sp_XXHP ------------------------------------------------------------------------------------------???????????????????????????????????????---------------????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GCTGTAAAACAGAGCCAGCCTGAATTAGTTGCTGCATGGAAGATTGGGCAGTGCTTGTGGACCTATGATTATGCAGGTGTCCACGATGCTCTTCGAAGCTATTCTTGGAGCCCAGCTGTTCGCGAAATTGTGACTGCCATAGGAGACGATTATTCACGGAAGAATTTGAAGCTGCTTTCTACGGCTTACTCAACGATAAGCGTTGCTGATGCTGCTAAATTCCTAGGGCTAGTGGATGCTGAGACCATCCGATG??????????????????????????????????????????????????????????------???????????????????????????????????????????????????????????????????????????????????? Cystopteris_utahensis_HNDZ ------------------------------------------------------------------------------------------ATGGCTGTGAGCGTGGACGGGGTGGGCATGGCCGATCAG---------------CAGCAAGCTGTGGAGAAGAAGCTGGCCTCACTTCAAGAAGCCATCAATTCTGGCCGTTTCGCTGAGCTGGCAAGCTTATGCGAGGCCCTTGAACTCGAGATTGCAGCAAATGGAATGGAAAAGCCTTCTGATTGGCCTTATGCTATTCATCTGCTGGGACATATTTATGTTTCTGACTTGAATAGTGCAAGATTTTTGTGGAAGCGTGTACCCGCAGCTGTAAAACAGAGCCAGCCTGAATTAGTTGCTGCATGGAAGATTGGGCAGTGCTTGTGGACCTATGATTATGCAGGTGTCCACGATGCTCTTCGAAGCTATTCTTGGAGCCCAGCTGCTCGCGAAATTGTGACTGCCATAGGAGACGATTATTCACGAAAGAATTTGAAGTTGCTTTCTACGGCTTACTCAACGATAAGCGTTGCTGATGCTGCTAAATTCCTAGGGCTAGTGGATGCTGAGACCATCCGATGCACTACCCAAGAT---GGATGGACATTGGATCCCGTTTCAAATATGCTAACAGTTCAG------CCTGCAATAACAGTGGCATCGCAGAAGCTAGATGCGAGCAAGTTACAAAACTTGACGGAGTATGTCTTCCATCTTGAACATTGA Davallia_fejeensis_OQWW ------------------------------------------------------------------------------------------ATGGCCGTGACTGTGGATGGGGTGGGCGTGGCCGATCAT---------------CAGCAAACTGTGGAGAAGAAGCTCTCCTCACTGCAAGAAGCCGTCAATTCCGGCCGTTTTGCTGAGCTTGCAAGTTTATGCGAGACCCTTGAACTCGAGATTGCCGCGAAGGGAATGGAAAAGCCTTCTGATTGGCCTTACGCGATTCATCTGCTCGGACATATTTACATTTCTGACTTAAATAGTGCAAGATTTTTGTGGAAGCGTGTGCCTGCAGCTGTAAAGCAGAGCCAGCCTGAATTAGCGGCTGTATGGAAGATTGGGCAGTGCTTGTGGACCTATGATTATGCAGGCGTTCATGATGCTCTTCGAAGCTATTCTTGGAGTCCAGCTGTTCACCAAATTGTTACAGCCATAGGAGACGACTACTTCCGGAAGAATTTAAAGCTGCTTTCTACTGCTTACTCAACTATAAGCGTCGGCGATGCTGCTAAATTCCTAGGGCTAACAGAGGCTGAGACCATCAAATGCACTACACAGGAT---GGATGGACATTGGATCCCGTTTCGAATATGCTAACACTTCAG------CCTGCAACAGCAGTTGCAGCTCAGAAGCTGGATGCGAGCAAGTTACAAAACTTGACCGAGTATGTCTTCCATCTCGAACACTAA Dennstaedtia_davallioides_MTGC ------------------------------------------------------------------------------------------ATGGCTGTGACTGTGGACGGGGTAGCAATGGCTGATCAA---------------CAGCCAACTGTGGAGAAGAAGCTCGCCTCAGTACAAGAAGCCATCAATTCTGGTCGATTCTCTGATCTTGCAAGCTTGTGCGAAGCTCTTGAACTCGAGCTTGCTGCAAAGGGACTAGAAAAGCCTGCTGATTGGCCTTACGCTATTCATTTGCTTGGACATATCTACATTTCTGATTTGAATAGTGCAAGATTTTTATGGAAGCGTATACCTGCAGCTGTTAAACAAAGCCAGCCTGAATTAGTTGCTGCATGGAAGATTGGGCAGTGCTTGTGGACCTATGATTATGCAGGTGTTCATGATGCTCTCCGAGGCTATACTTGGAGCCCAGCTGTTGGCCATATTGTAACCGCAATAGGAG???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????------???????????????????????????????????????????????????????????????????????????????????? Deparia_lobatocrenata_FCHS ------------------------------------------------------------------------------------------ATGGCTGTGACAGCGGACGGGATGGGCATGGCCGATCAT---------------CAGCAAGCTGTAGAGAAGAAGCTGGCCTCACTGCAAGAAGCCATCAATTCTGGCCGGCTCGCTGAGCTTGCAAGCTTATGCGAGGCCCTTGAACTCGAGCTTGCTGCGAAGGGAATGGAAAAGCCTTCTGATTGGCCTTATGCTATTCATCTGCTCGGACATATTTACATTTCTGACTTGAATAGTGCAAGATTTTTGTGGAAGCGTGTACCTGCAGCTGTAAAACAGAGCCAGCCTGAATTAGTCGCTGCATGGAAGATTGGGCAGTGCTTGTGGACCTATGATTATGCAGGTGTTCATGACGCTCTTCGAAGCTATTCTTGGAGCCCAGCTGTTCACCAAATTGTGACTGCCATAGGAGACGATTATTCACGAAAGAATTTGAAGCTGCTTTCTACGGCTTACTCAACTATAAGTGTTGCTGATGCTGCTAAATTCCTAGGGCTGATGGATGCTGAGACCATCAAATGCACTACCCAAGAT---GGATGGACATTGGATCCTGTTTCAAATATGCTAACAGTTCAG------CCTGCAATAACTGTGGCGTCTCAGAAGCTAGATGCGAGCAAGCTACAAAACTTGACGGAGTATGTCTTCCATCTTGAACATTAA Didymochlaena_truncatula_RFRB ------------------------------------------------------------------------------------------???????????????????????????????????????---------------???????????????????????????TCACTGCAAGAAGCCATCAATTCTGGCCGTTTTTCTGAGCTCGCAAGCTTATGCGAGGCCCTTGAACTCGAGCTTGCTGCAAAGGGAATGGAAAAGCCCTCTGATTGGCCATATGCTATGCATCTACTTGGACATATTTATATCTCCGACTTGAATAGTGCAAGATTTTTGTGGAAGCGTGTACCTGCAGCTGTAAAACAGGGCCAGCCTGAATTAGTTGCTGCATGGAAGATTGGACAGTGTTTGTGGACCTATGATTATGCTGGTGTTCATGATGCTCTTCGAAGCTATTCTTGGAGTCCAGCTGTTGACCAAATTGTGACTGCCATAGGAGACAATTATTCACGGAAGAATTTGAAGTTGCTTTCTACCGCTTACTCAACCATAAGTGTTGCTGATGCTGCCAAATTCCTAGGGCTAATGGAGGCTGAGACCATCAAATGCACTACCCAAGAT---GGATGGACATTGGATCCTGTTTCAAATATGCTAACAGTTCAG------CCTTCAATTACAGTGGCAGCTCAGAAGCTAGATGCAAGCAAGTTACAAAACTTGACGGAGTATGTCTTCCATCTTGAACATTGA Diplazium_wichurae_UFJN ------------------------------------------------------------------------------------------ATGGCTGTGACAGTGGACGGGGTGGGCATGTCCGATCAT---------------CAGCAGGCTGTGGAGAAGAAGCTGGCCTCACTGCAAGAAGCCATTAATTCTGGCCGTCTCGCTGAGCTTGCAAGTTTATGCGAGGCCCTTGAACTCGAGCTTGCTGCGAAGGGAATGGAAAAGCCTTCTGATTGGCCTTATGCTATTCATCTGCTCGGACATATTTACATTTCTGACTTGAATAGTGCAAGATTTTTGTGGAAGCGTGTACCTGCAGCTGTAAAACAGAGCCAGCCTGAATTAGTTGCTGCATGGAAGATTGGGCAGTGCTTGTGGACCTATGATTATGCAGGTGTTCATGACGCTCTTCGAAGCTATTCTTGGAGCCCAGCTGTTCACCAAATTGTGACTGCCATAGGAGACGATTATTCACGGAAGAATTTGAAGCTGCTTTCTACAGCTTACTCAACGATAAGTGTTGCTGATGCTGCTAAATTCCTAGGGCTAATGGATGCTGAGACCATCAAATGCACTACTCAAGAT---GGATGGACATTGGATCCTGTTTCAAATATGCTAACAGTTCAG------CCTGCAATAACTGTGGCATCTCAGAAGCTAGATGCGAGCAAGCTACAAAACTTGACGGAGTATGTCTTCCATCTTGAACATTAA Dipteris_conjugata_MEKP ------------------------------------------------------------------------------------------ATGGGTGTAATGGGTGATGTTGCACCGCCACTGCAGCAACAGGCATTGCAGCCCCAGCAGTGGGTCAGTATGGGACTCAGCTTGTTGCACGATGCTATTAATTCAGGGCACTTTGAAGAGATTGCAGGCTTGTGCGAATCCCTTGAACTTGAGCTTGCTGCCAAAGGACTGGAAAAGCCAGATGATTGGCCTTATGCTATTCATGTGCTGGGCTATATCTATGTTTCTGATTTAAACAATGGAAGGTTCTTGTGGAAGCGTATTCCTGGGGCTGTAAAGCAAAGTAACCCAGAACTAGTAGCTGCTTGGAAGATTGGACAGTGCATGTGGAGATATGACAATGCAGGTGTGCATGAAAGCCTTCGGAGCTATAGCTGGAGCCCGTCTGTTCAGCAAGTAGTATCTGCGGTTGCGGATGATTATTCAAGGAGGGTAATGAAGTTGCTATCTACAGCTTATTCAACAATCACTGTGAGTGATGCTGCCAAGTTTTTGGGGTTACAGGAGGATGAGACAATCAAATGCACCATGCAAGAA---GGCTGGACTTTGGATTCAGCCTCAAAGATGCTTACTGTTCAA------TCTCTAATTCCTACAGCAGGGCAAAAGCTTGACTCTAGCAAGCTTCAAAGCTTGACAGAGTATGTCTTTCACCTAGAGCATTAA Encephalartos_barteri_GNQG ---------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGAGTTGGCACCTCTCAAGGAAGCCATTGAATCCAAGGCCTACGACAAGATTGCAGACATATTGGATGAAGTCCAACTTCAGTTGGCTGCTCAAGGCATCAAAGAGCCGGAAAACTGGCCATACCCTCTCCATTTGTTGGGTCACATCTACATACACGATATTAACAGTGCCAGATTCCTTTGGAAGCTCACCCCATCTTCTGTGAAGGAGAGCCAACCCGAAGTTTTTGCGGTTTGGAAGATAGGTCAGTGCATGTGGACACATGACTATGCTGGTGTCTATGGAGCTATACGTGGCTTCAACTGGAGTCAGGAACTACAACAGATTATAACTGCTTTTGCTGATAATTACACAAAAATGGTTTTCAAGCTGCTCTTAGATGCTTATTCAACAATCAGTGTAGCTGATACAGCTCTGTTCTTGGGGATGTCTGAGGAGGATGCAGTGGCTTATACTTTGCAACAG---GGTTGGACTCTTGACTCAGCAGCACAGATGCTCACAGTAAAA------AGAATTCCAGCAGTTGTGGACCAGAAACTAGATTCTACTAAACTGCAAAGCTTGACAGAATATGTTTTCCACTTGGAACATTGA Equisetum_diffusum_CAPN ---------------------------------------------------TTGTGTAAGGAGGAGAGAGAGAGAGAGAAGGGGAGAAAG------------------------------------------------------ATGACGGAGGTGGAGAGGCTACGGGGATCGTTACAAGAAGCCCTCGCTTCCCATCGTTTTTCAGACATTGCCGATATCTGCGATGATCTCGAGCTACAGCTGGCTGCTGTGGGAGCGGAAAAGCCTGATGATCGCCTTTACTTAATCCATTTGCTTGGGCATATTTACATATCCGATCTGAATAGTGCTAGATTTTTATGGAAACGCATCCCCGAAACCGTAAAACAGAGTCAGCCGGAACTGCTTGCGATTTGGAAAATTGGGCAATGCATGTGGAAATATGATTACTCGGGTGTTCATGAGGCACTTTGTAGTTATAGCTGGAGCCCTGAAGTCCAAGCGATTGTTTCTTCTTTATCGGAGGACTACAGAAAAAGAATGTTGCGTTTGATTTCAACAGCCTACTCAACCATTGGCATTGGTGAGGCGGCAAGGTTATTGGGAATGACAGAGGAGGAGGCTGTCCATTGTACAACTTTTCAA---GGGTGGACTTTGGATGCAACCACTCGGATGCTCACAGTAAAG------CCGCTTCCACCTGTTGTTGAGCAAAGTGGAGACTCGGGTAGCTTGCAAATGCTATCGGAGTATGTTTTCCATCTCGAGCATTAG Equisetum_hyemale_JVSZ ---------------------------------------------------GTGTGGGAAAGAGAGAGAAGAGAAAAGAAGAGAAGAAAG------------------------------------------------------ATGACGGAGGTGGAGAGGCTACGGGGATCGTTACAAGAAGCCCTCGCTTCTCATCGCTTCTCAGACATTGCCGATATCTGCGATGATCTCGAGCTACAGCTGGCCGCTGAGGGAGTGGAAAAGCCTGATGATCGCCTTTACTTAATCCATTTGCTTGGGCATATTTACATATCTGATCTGAACAGTGCTAGATTTTTATGGAAACGCATCCCCGAAACCGTAAAGCAGAGTCAGCCAGAACTGCTTGCGATTTGGAAAATTGGGCAATGCATGTGGAAATATGATTACTCAGGTGTTCATGAAGCACTTTGTAGTTATAGCTGGAGCCCTGAAGTGCAAGCGATTGTTTCTTCTTTATCGGAGGACTACAGAAAAAGAATGTTGCGCTTGATTTCAACAGCCTACTCAACCATTGGCATCAACGAG??????????????????????????????????????????????????????????????????????????????????????????????????????------???????????????????????????????????????????????????????????????????????????????????? Gaga_arizonica_DCDT ------------------------------------------------------------------------------------------???????????????????????????????????????---------------?????????????????????????????????????????????????????????????????????????????????????????????TTGCAGCTTGCAGCAAAGGGAGTAGAGGTGCCCTCTGACTGGCCGTATGCTATGCATTTGCTTGGACATATCTTCATTTCCGACTTGAATGGTGCACGATTCTTGTGGAAGCGTACACCGGAAGCCGTCAAACAAAGCCAGCCGGAACTAGTTGCTGTATGGAAGATTGGTCAGTGCCTATGGACATACGATTATGCAGGTGTCCATGAGGCTCTTCGATGCTTCACTTGGAGCCCTGCCGTTCAGCAAATTGTGAATGCCATCAAAGACGATTATTCACAAAAAAACTTGAAACTGCTCTCAACCGCTTATTCCACTATTAGTGTCGCTGATGCGGCCAAGTTCTTGGGGCTGACAGAAAGTGAGACTGTTAAAAGTACCACCCAAAAT---GGATGGGCATTGGATCCTGCTTCAAACATGCTTACCGTCAGG------CCTGTGGTGAACTTGGCAGCCCAGAAATTGGATTCAAGCAAGCTACAAGATTTGACAGAGTACGTCTTCCATCTGGAACATTAA Ginkgo_biloba_SGTW ---------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGACTTAACATCGCTTAAGGAAGCCATTGAATCCAAGGGCTACGATAAGATTGCAGACATCTGTGATGAACTCCAACTCCAGTTGGCTGCTCAAGGCATCAAAGAGCAAGAAAACTGGCCATTTTCTATCCATTTACTGGGACACATCTACATACAGGATATAAACAGTGCAAGATTCCTGTGGAAGCGCATACCATCTTCTGTGAAAGAGACTCAGCCTGAAGTTACTGCGGTGTGGAAGATAGGTCAGTGCATGTGGACACATGACTATGCTGGTGTACATGGAGCTATTCATGGCTTTAACTGGAGTCAGGAAGTGCAACAGGTTGTAACCGCATTATCTGATAGTTATACAAAAAGGGTTTTCAAGTTACTATCAGCTGCATATTCAACAATATGTGTGGCTGATACAGCACAGTTCTTGGGAATGTCTGAGGAGGATGCAATAACTTATACATTGCAACAT---GGTTGGATTCTTGATTCAGCATCGCAGATGCTTACTGTCAGA------AGAACACCAGTGGTTGTGGACCAGAAACTAGATTCCAGTAAATTGCAAAATCTGACAGAATATGTTTTCCACTTGGAACATTAA Gymnocarpium_dryopteris_HEGQ ------------------------------------------------------------------------------------------GTGGCTGTGACCGTGGACGGGGTGGGCATGGCCGATCAG---------------CAGCAAGCTGTGGAGAAGAAGATGGCCTCACTGCAAGAAGCCATCAATTCTGGCCGTTTCGCTGAGCTTGCAAGCTTATGCGAGGCCCTTGAACTCGAGATTGCAGCAAAGGGAATGGAAAAGCCTTCTGATTGGCCTTATGCTGTTCATCTGCTGGGACATATTTACATTTCTGACTTGAATAGTGCAAGATTTTTGTGGAAGCGTGTACCTGCAGCTGTAAAACAGGGCCAGCCTGAATTAGTCGCTGCATGGAAGATTGGGCAGTGCTTGTGGACCTATGATTATGCAGGTGTTCACGATGCTCTTCGAAGCTATTCTTGGAGCCCAGCTGTTTGCCAAATTGTTACTGCCATAGGAGATGATTATTCACGGAAGAATTTGAAGTTGCTTTCTACGGCTTACTCAACGATAAGCGTTGCTGATGCTGCTAAATTCCTAGGGCTAGTGGATGCTGAGACCATCCAATGCACTACCCAAGAT---GGATGGACATTGGATCCTGTTTCAAATATGCTAACAGTTCAG------CCTGCAATAACAGCGGCATCTCAGAAGCTAGATGCAAGCAAGCTACAAAACTTGACGGAGTATGTCTTCCATCTTGAACATTGA Homalosorus_pycnocarpos_OCZL ------------------------------------------------------------------------------------------ATGGCTGTGACCGTGGAGGGTGTAGCCATGGCTGATCAA---------------CAGCAAACTGTGGAGAAGAAGCTGGCCTCAGTACAAGAATCCATCAATTCTGGTCGTTTCGCTGATCTTGCAAGCTTGTGCGAAGCACTTGAACTCGAGCTTGCTACGAAGGGACTAGAAAAGCCTGCTGATTGGCCTTACGCTATTCATTTACTTGGACATATCTACAGCTCTGATTTGAATAATGCAAGATTTTTATGGAAGCGTATACCTGCAGCTGTTAAACAAAGCCAGCCTGAATTAGTCGCTGCATGGAAGGTTGGGCAGTGCTTGTGGACCTATGATTATGCAGGTGTTCATGATGCTCTTCGAGGGTATCCTTGGAGCCCAGCTGTTCACCAAATTGTAACTGCAATAGGAGATGATTATTCCCGGAAAAACTTGAAGTTGCTTTCTACTGCTTACTCAACTATTGATGTTGCTGATGCTGCTAAATTCTTGGGATTAGCAGAGGGTGAGACCATAAAATGCACTACCCAAAAT---GGATGGACATTGGATCCTGTTTCAAATATGCTTACAGTCCAG------CCTGCAGTAACCATCACAGCTCAGAAGCTAGATTCGAGCAAGCTACAAAACTTGACGGAGTATGTTTTCCATCTTGAACATTAA Hymenophyllum_bivalve_QIAD ------------------------------------------------------------------------------------------CCACCATCACCACCGCCACCACAACAGCAACTGCAGCCA---------------CAACAGTCTGTTGCCATGAGAGTCAGCATGCTGCATGATTCTATCAATTCAGGCCGCTTTGCAGACATTGGGAACTTAAGTGAAGGCATCGAACTTGAGCTTGCTGCCAGTGGGCTGGAAAAACCAGATGATTGGCCATATGCTATTCATTTGCTTGGGTATATCTATGTTTCTGACCTGAGCAGTGCAAGGTTCTTATGGAAGCGCATACCTGCAACTGTAAAGCAAAGCCATCCAGAATTAGTTGCTGCATGGAAAATTGGACAGTGCATGTGGACATATGACCATGCTGGGGTACATGAAGCTCTTCAAAGCTACAGCTGGACTCCGCCTGTCCAGCAACTTGTAGCTGCTATTGCAGAAGATTATTCAAGGAGGATCATGAAGCTTCTGTCAACAGCCTATTCAACAATCAGTGTGAGTGATGCTGCCAAGTTCTTCGGACTGACTGAGGATGAAACTATCAGATGCACTATGCAAGAG---GGCTGGACTTTGGATTCTGTCTCAAAGATGCTCATTGTTCAG------TCTGCAAGTCCTGTAGCAGGACAAACTTTAGATTCTAGCAACTTACAGAACTTAACAGAGTACGTCTTTCATTTAGAACATTGA Leucostegia_immersa_WGTU ------------------------------------------------------------------------------------------ATGGCCGTGACAGTGGAAGGGGTGGGCGTGGCGGATCAT---------------CAGCAAGCTGTGGAGAAGAAGCTGGCCTCACTGCAAGAAGCCATCAATGCCGGCCATTTTGCCGAGCTTGCGAGCTTATGCGAGGCCCTTGAACTCGAGCTTGCTGCAAAGGGAATGGAAAAACCTGCTGATTGGCCTTATGCTATTCATCTGCTTGGACATATTTACATGTCTGACTTGAATAGTGCAAGATTTTTGTGGAAGCGTGTACCTGCAGCTGTAAAACAGAGCCAGCCTGAATTAGTTGCTGCATGGAAGATTGGGCAGTGCCTGTGGGCTTACGATTATGCCGGTGTGCATGATGCTCTTCGAACCTATTCTTGGACTCCAGCTGTTCAGCAAATTGTGACTGCCATAGGAGACGACTATTCACAAAAGAATTTGAAGTTGCTCTCTACCGCTTACTCAACTATAAGCGTTGCTGATGCAGCTAAATTCCTAGGTTTGATGGAGGCTGAAACTGTCAAATGCACTACCCAAGAT---GGATGGATTTTGGATCCTGTTTCAAATATGCTAACAGTTCAG------CCTGCAAGAACAGTGGCAGCTCAGAAGCTAGATGCAAGCAAGTTACAAAACTTGACAGAGTATGTCTTCCATCTTGAACACTAA Lindsaea_linearis_NOKI ------------------------------------------------------------------------------------------ATGGCCGTGACTGTGGAAGGGGTAGCCATGGCCGATCAA---------------CAGCAAGCTGTGGGCAAGAAGCTTGCCCTCCTGCAAGAAGCCATAGCTTCTGGCCGTTTCTCTGAACTCGCCAACTTGTGCGAAACTCTTGAACTTGAGCTTGCTGCCAACGGACTGGAGAAGCCATCCGATTGGCCTTACGCTATTCATTTGCTTGGACTCATCTACAGTTTTGATTTGAATAGCGCCAGATTTTTGTGGAAGCGCATGCCTGCAGCTATTAAGCAAAGCCAGCCTGAGCTAAGTGCTGCATGGAAAGTTGGCCAGTGCTTGTGGACCTATGACTATGCAGGGGTCTATGATGCTCTTCGTAATTATCCCTGGAGCCCAGCTCTACAACAGATTGTTACTGCCATTGAAGTGAATTATTCAAGAAGAAACATGAAGTTGCTATCTACAGCTTACTCCACGATCAGCGTTAGTGATGCTGCCAAATTTTTGGGGCTGACAGAAGCTGACACAATAAAAAACACTGAACAAGAA---GGATGGACATTGGACCCTGCATCAAGCATGCTCACGGTCCAG------CCTTCAGTCATTGCAGCAACACACAAGCTGGACTCCAGCAAGCTCCAAAACCTGACAGAATACGTCTTCCATCTGGAGCATTGA Lindsaea_microphylla_YIXP ------------------------------------------------------------------------------------------ATGGCCGTGACTGTGGAAGGGGTAGCCATGGCCGATCAA---------------CAGCAAGCTGTGGGCAAGAAGCTTGCCCTCCTCCAAGAAGCCATAGCTTCTGGCCGTTTCTCTGAACTCGTTAAGTTGTGCGAAACTCTTGAACTTGAGCTTGCTGCCAACGGACTGGAGAAGCCATCCGATTGGCCTTACGCTATTCATTTGCTTGGACTCATCTACAGTTTTGATTTGAATAGCGCCAGATTTTTGTGGAAGCGCATGCCTGCAGCTATCAAGCAAAGCCAGCCTGAGCTAAGTGCTGCATGGAAGGTTGGGCAGTGCTTGTGGACCTATGACTATGCAGGGGTCTATGATGCTCTTCGTAATTATCCTTGGAGCCCAGCTCTACAACAGATTGTTACTGCCATTGAAGTGAATTATTCAAGAAGAAACATGAAGTTGCTATCTACAGCTTACTCCACGATCAGTGTTAGTGATGCTGCCAAATTTTTGGGGCTGACAGAAGCTGACACAATTAAAAACACTGAACAAGAA---GGATGGACATTGGACCCTGCGTCAAGCATGCTCACGGTCCAG------CTTCCAGTCATTGCAGCAACACAGAAGCTGGACTCCAGCAAGCTCCAAAACCTGACAGAATACGTCTTCCATCTGGAGCATTGA Lygodium_japonicum_PBUU ------------------------------------------------------------------------------------------TTGGCCATGGGTATGAGCGGG---------------------------------GATCAGCATTTTGACATGAAACTCAGCCCGTTGCACGACGCTATCAATTCAGGCCGGTACTCCGATGCCAGAGACATCTGCGATGCCCTAGAGCTTGAGCTTGCCGCTAAAGGACTGCAGAAGCCAGATGACTGGCCTTATGAGGTCCATCTGCTTGCACATATCTATGTCTCTGATCTGAATAGTGCAAGGTTTTTGTGGAAGCGTATACCCGCAACCATAAAACAAGGACACCCAGAACTTGTTGCTTTGTGGGGAATTGGACAATGCATGTGGAAATATGACCATGCTGGCGTTCATAATGCTCTTCGAAGCTACAATTGGAGTCCAGCTGTTCAGCAGATGATTGCTGCATTTTCAGAGGATTATTCTTGGAAGATCTTGAAACTGCTATCCACAGCATATTCATTTATAAGTGTTAGTGATGCTGCAAATTTTTTGGGCATAACAGAGGCAGATGCCATTAAACGCACTACCCAGGAG---GGCTGGACTCTGGATCCTGTGTCAAACATGCTTACTGTTCAG------CCAATACTTCCTGCAGCAGCACAAAAGCTAGATTCTAGCAAACTTCAAA??????????????????????????????????? Myriopteris_rufa_GSXD ------------------------------------------------------------------------------------------???????????????????????????????????????---------------????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????AATGGTGCAAGATTCTTGTGGAAGCGGATACCGGCAGCTGTCAAACAATGCCAGCCGGAACTAGTTGCTGCATGGAAGATTGGCCAGTGCCTATGGACATATGATTATGCGGGCGTCCACGACGCTCTTCGATGTTACTCTTGGAGCCCTGCCGTTCAGCAAATCGTGAATGCCATAAAAGATGATTATTCACGAAAGAATTTGAAATTGCTCTCAACCGCATATTCCACTATTAGTGTCGCTGATGCATCCAAGTTCCTGGGGCTGACAGAAAGTGAGACTGTCAAAAGTACTACCCAAAAC---GGATGGGCATTCGATCCTGCTTCAGACATGCTTACTGTTGGG------CCTGCGGTGAACTTGGCAGCACAGAAACTAGATTCAAGCAAGCTACAAGATTTGACTGAGTACGTCTTCCATCTTGAACATTAA Nephrolepis_exaltata_NWWI ------------------------------------------------------------------------------------------???????????????GACGGGGTGGGCGTGGCCGATCAT---------------CAGCAAACGGTCGAGAAAAAGCTTGCTTCTCTGCAAGAAGCCATCAATTCTGGCCGTTTCGCTGAGCTTGCAAGCTTATGCGAGGTCCTTGAGCTCGAGCTTGCTGCAAAGGGAATGGAAAAGCCTTCTGATTGGCCTTATGCTCTACATTTGCTTGGACATATATACGTTTCTGACTTGAATGGTGCAAGGTTTCTGTGGAAGCGTGTACCTGCAGCTGTAAAACAGAGCCAGCCTGAACTAGTTGCTGCATGGAAGATTGGGCAGTGCTTGTGGACCTATGATTATGCGGGTGTTCATGATGCTCTTCGAAGCTATTCTTGGA???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????------???????????????????????????????????????????????????????????????????????????????????? Notholaena_montieliae_YCKE ------------------------------------------------------------------------------------------ATCCCTGTTACCGTGGAGGGGGTAGCCATGGCTGATCAA---------------CCACAAGCTGTGGAAAGGAAACTTACCTCTTTACAAGAAGCTATCAACTCTGGCCGTTTCGAAGCTCTTGGAAGCATGTGCGAAGCCCTCGAGCTGGAGGTTGCTGCAAAGGGACTAGAAAAGCCATCCGACTGGCCATATGCTATGCATTTGCTTGGACACATCTTCATTTCTGACTTGAATGGTGCAAGATTCTTGTGGAAGCGAATACCGGAAGCCGTCAAACAAAGTCAGCCAGAACTAGTTGCTGCATGGAAGATTGGTCAGTGCCTATGGAAATATGATTATGCGGGTGTCCACGAGGCTCTTCAATGCTATGCTTGGAGCCCTGCCGTTCAGCAAATTGTGAATGCCATAAAAGATGATTATTCACGGAAGAACTTAAAACTGCTCTCGACCGCTTATTCCACTATTAGTGTTGCTGATGCGGCCAAGTTCTTGGGGCTGACAGAAAGTGAGACTGTCAAAAGTACCACCCAAAGT---GGATGGGCATTGGATCCTGCTTCAGCCATGCTTACCGTCAGG------CCTGTGGTGAACTTGGCAGCCCAGAAGTTAGATTCAAGCAAGCTACAAGATTTGACGGAGTACGTCTTCCATCTGGAACATTAA Onoclea_sensibilis_HTFH ------------------------------------------------------------------------------------------???????????????????????????????????????---------------???????????????????????????????????????????????????????????????????????????????????????CTTGAACTCGAGCTTGCTGCGAAGGGAATGGAAAAGCCTTCTGATTGGCCTTATGCTATTCATCTGCTCGGACATATTTACATTTCTGACTTGAATAGTGCAAGATTTTTGTGGAAGCGTGTACCTGCAGCTGTAAAACAGATCCAGCCTGAATTAGTCGCTGCATGGAAGATTGGGCAGTGCTTGTGGACCTATGATTATGCAGGTGTTCATGATGCTCTGCGAAGCTATTCGTGGAGCCCATCTGTTCACCAAATTGTGACTGCCATAGGAGATGATTATTCACGGAAGAATTTGAAGCTGCTTTCTACGGCTTACTCAACTATAAGTGTTGCCGATGCTGCTAAATTCCTAGGGCTTATGGATGCTGAGATCATCAAATGCACTAACCAAGAT---GGATGGACATTGGATCCTGTTT????????????????????------???????????????????????????????????????????????????????????????????????????????????? Ophioglossum_petiolatum_WTJG ------------------------------------------------------------------GATGGCGACCAAAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGATGGCTGGCCCTACGTCATCCATCTACTCGGCCATATCTATATTTCTGACTTAAACAGTGCCAGATTTCTATGGAAGCGTATTCCTGCATCTGTCAAACAGACTAACCCCGAACTGGTAGCTGCCTGGAAGATAGCACAATGCCTGTGGACACATGACTATGCAGGCGTGTATAATGCTGCTCGCGGTTACAATTGGAGTCCAGAAGTGCAACAGATTGTAGCAGCTATAGCAGAGGACCATTCAAAGAGAATTTCTAAACTTCTCTCAACTGCCTATAGTACAATCAGTGTT------------------------------------------------------------------GGT--?????????????????????-------------------------------------------------------------------------------------------------------TAG Ophioglossum_sp_QHVS ------------------------------------------------CTTCTTAAACCTCGCCCTCAAACGCTCTATCAAACGAAAATG------------------------------------------------------CAGGAGGAAGACACTTCTGTCTACAGACATGTGCACGATGCGCTTCATTCTCAGCGATTTGGAGAGGTTGCGGATATCTGCGACAATCTGGAGCTTGAGATGGCGACCAAAGGAACCCTAAATCCCGATGACTGGCCCTACGCCATCCATCTACTCGGCCATATCTATATTTCTGACTTAAACAGTGCCAGATTTCTATGGAAGCGTATTCCTGCATCTGTCAAACAGACTAACACCGAATTGGTAGCTGTCTGGAAGATAGCACAATGCCTCTGGACACATGACTATGCAGGCGTATATAATGCTGCTCGCGCTTACAATTGGAGTCCAAAACTACAACAGATTGTGGCAGCTATAGCAGAGGACCATTCAAAGAGAATTTCTAAACTTCTCTCAACTGCCTATAGTACAATCAGTGTCGGTGATGCGGCAACTTTTTTGGGGTTATCACAAAATGATCCAGTTCAATATATGTTGCAGCAA---GGTTGGACTTTAGATTCAGCCTCTCAGATGTTGACTGTGCAA------CCACTTTTTACAGCCAGAGAACAGATGCTAGATTCTAGCAAGCTGCAAAATCTTACAGAATATGTTTTCCATTTGGAACACT?? Osmunda_javanica_VIBO ------------------------------------------------------------------------------------------ATGGGCATAGTTGGCGATGTTGCAGCACCACAGCAACAGCAA------------CAGCAACAGCTTGGGGAGAGTCTCAGCTTGCTGCATGATGCTATCAGCTCATGCCGCTTTGCAGACATTGGAAGCATCTGTGAAACCCTTGAGCTTGAGTTGGCTGCCAAAGGAATTGGAAAGCCTGATGATTGGCCATATTCTATCCATTTACTTGGGTATATCTATGTTTCTGATCTGAACAGTGCAAGATTTCTATGGAAGCGTACACCTGCCACTGTAAAGCAGAGCCAGCCAGAATTGGTTGCTGCATGGAAAATAGGACAGTGCATGTGGACGTATGACCATGCAGGTGTGCATGGGGGCCTTCGAAGTTACAACTGGAGCCCAGCAGCTCGGCAAGTTGTAGCTGCTGTAGCAGAAGATTATTCCAAGAGAATTTTGAAGCTGCTTTCTACAGCTTACTCAACAATCAGTGTGAGTGATGCTGCCAGATTTTTGGGGTTAACAGAGGATGAAACTATCCGATGCACCCTGCAACAA---GGCTGGACTTTGGATTCTGTCTCACAGATGCTGACTGTTCAG------TCTACAACTCCTGTTGCAGGGCAGAAGTTAGATTCCAGCAAGCTGCAAAACTTAACAGAGTATGTCTTTCATTTAGAACATTAG Osmunda_sp_UOMY ------------------------------------------------------------------------------------------ATGGGTATAGTTGGTGACGTTGCACTACCCCAGCAGCAGCAACGGCAACAG---CAACAGCCTGGGGAGACGAGTCTCAGCTTGCTGCATGATGCTATCAGCTCATGCCGCTTTGCAGACATTGGAAGCATATGTGAAACCCTTGAGCTTGAGCTGGCTGCTAAAGGAATTGGAAAGCCTGATGATTGGCCATATTCTATCCATTTACTTGGGTATATCTATGTTTCTGATCTGAACAGTGCAAGATTTCTATGGAAGCGTACACCTGCTACTATAAAGCAGAGCCAGCCAGAATTGGTTGCTGCATGGAAAATTGGACAGTGCATGTGGACGTATGACCATGCAGGTGTGCATGAGGGCCTTCGAAGTTACAGCTGGAGCCCAGCAGCTCAGCAAGTCGTAGCTGCTGTAGCAGAAGATTATTCCAAGAGAATTATGAAGCTGCTTTCTACAGCCTACTCAACAATCAGTGTGAGTGATGCTGCCAGATTTTTGGGGTTAACAGAGGATGAGACTATCCGATGCACTTTCCAACAA---GGCTGGACTTTGGATTCTGTCTCAAAGATGCTGACTGTTCAG------TCTACAACTCCTGTTGCAGGGCAGAAGTTAGATTCCAGCAAGCTGCAAAATTTAACGGAGTATGTCTTTCATTTAGAACACTAA Parahemionitis_cordata_ZXJO ------------------------------------------------------------------------------------------ATCCCTGTGACTGTGGAGGGGGTAGCCATAGGTGATCTA---------------CCACAAACCATGGAAAGGAAGCTTGCCTCTTTACAAGAAGCTATAAACTCTGGCCATTTTGAAGCACTTGCAAGCATGTGCGAAGCCCTCGAGCTGGAGCTTGCTGCAAAGGGAGTAGAAGTGCCCTCTGACTGGCCATATGCTATGCATTTGCTTGGACATATCTTCAATTCTGACTTGACTGGTGCACGATTTTTGTGGAAGCGCGTACCGGAAGCCATCAAACAAAGCCAGCCAGAACTAGTTGCTGCAT???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????------???????????????????????????????????????????????????????????????????????????????????? Phlebodium_pseudoaureum_ZQYU ------------------------------------------------------------------------------------------???????????????????????????????????????---------------??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GTTCATGATGCTCTTCGAAGCTATTCTTGGAGTCCAGCTGTTCATCAAATTGTTACTGCCATAGGAGATGACTACTTCAAGAAGAATTTGAAGCTGCTTTCTACTGCTTACTCAACCATAAGCGTTGCGGATGCTGCTAAATTCCTAGGGCTAGCGGAGGCTGAGACCATCAAATGCACCACCCAAGAT---GGATGGACATTGGATGCGGCTTCAAATATGCTAACAGTTCAA------CCTGCAACAACAACAGCAGCTCAGAAGCTAGATGCGAGCAAGTTGCAAAACTTGACCGAGTATGTCTTCCATCTCGAACACTAA Phymatosorus_grossus_ORJE ------------------------------------------------------------------------------------------ATGGCCGTGACCGTGGATGGAGTGGGCGTGGTCGATCAT---------------CAACAAACTGTGGAGAAGAAGCTTTCCTCACTGCAAGAAGCCATCAAATCTGGCCGTTTTGGTGAACTTGCTAGCTTATGCGAGGCTCTTGAACTCGAGCTTGCTGCAAAGGAAATGGAAAAGCCTTCTGATTGGCCTTATGCAATTCATGTGCTTGGACATATTTACGTTTCTGACTTGAGTAGTGCAAGATTTTTGTGGAAGCGTATACCCGCAGCTGTAAAACAGAGCCAGCCTGAATTAGTGGCCTCATGGAAGATTGGGCAGTGCTTGTGGACTTATGATTATGCAGGGGTTCATGATGCTCTTCGAAGCTTTTCTTGGAGTCCAGCTGTTCACCAAATTGTTACCGCCATAGGAGATGACTACTTTAAGAAGAATTTAAAGCTGCTTTCTACTGCTTACTCAACCATAAGCGTTGCCGACACTGCTAAATTCCTAGGGCTCACGGAGGCTGAGACCATCAAATGCACCACCCAAGAT---GGATGGACATTGGATGCGGCTTCAAATATGCTAACAGTCAAG------CCAGCAACAGCAGTGGCAGCTCAGAAGCTAGATGCGAGCAAGTTACAAAACTTGACCGAGTATGTTTTCCATCTTGAGCACTAA Pilularia_globulifera_KIIX ------------------------------------------------------------------------------------------ATGGCTGTAACCATGGATGGTGTCGCCATGTCTGATCAG---------------CAG------------------CTCAGCTTCGTCCTAGAAGCCATCAACTCTGGCCGTTTCTCAGAGATCGCCGGGCTCTGCGAATCACATGAACTCGAGCTTGCTGCGAAAGGATTGGATAAGTCAGCCGATTGGCCTTATGCTGTCCATTTACTTGGACACATCTACACCTCTGATCTGAATAGTGCAAGATTTTTGTGGAAGCGTATACCTGCAGCAGTGAAACAAAGCCAACCAGAAGTGTCCGCTGTATGGAAGATTGGACAATGTTTATGGACATATGACTATGCTGGTGTACATGATGCTCTTCGAAACTACAATTGGAGTCAACAAGTTCAATCAATTATAACTGCTTTTGGAGATGAATATTTGAAGAAAAACATGAAGTTTTTAACCACAGCATACTCCACAATTAGTGTCTCAGATGCTTCAAAGTTCTTGGGTTTAACAGAGGGTGAGACTGTAAAACGTACCACTCGGGAA---GGATGGATCCTAGATCCTACTTCGAACATGCTGAGTTCCCGA------ATGGCAACAATTGCAGCAGCTCAAAAGATAGATTCTAGCAAGCTTCAGAGCTTGACAGAGTATGTCTTCCATCTTGAACATTGA Pityrogramma_trifoliata_UJTT ------------------------------------------------------------------------------------------???????????????????????????????????????---------------??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CCTGAAGCTGTCAAACAAAGCCAGCCTGAGCTAGTTTCTGCTTGGAAGATTGGTCAATGCTTGTGGACCTATGATTATGCAGGTGTTCATGATGCTTTCCATGGATATTCTTGGAGCCCAGCTGTTCAGCAACTTGTGGCTGCCATAAAAGATGACTATTTTCAGAAGAACATGAAGTTGCTCTCGACTGCTTACTCCACTATCAGTGTTGCCGATGCTGCCAAGTTCTTGGGCTTGACAGAGAGCGAGACTATCAAAATTACCACCCAAAAT---GGATGGACTCTGGATTCAGCTTCAAACATGCTTACCGTCGTG------CCTGTGGTAATTTCGGCTGCCCAGAAACTCGATTCAAGCAAGCTGCAAGAGTTGACGGAGTACGTTTTCCATCTTGAACATTAA Plagiogyria_japonica_UWOD ------------------------------------------------------------------------------------------ATGGCTGTGACTGTGGATGGTGTACCCATGCCTGATCAA---------------CAGCAACCT---GACACGAAGCTCAGTTCACTGCACGACGCTATCAATTCTTGCCGTTTTGGGGAGATCGGAAGCCTTTGCGAAGCCCTCGAACTTGAGCTTGCTGCGAAGGGATTGGAAAAGCCAGCGGATTGGCCTTATGCTATCCATTTGCTTGGACATATCTACGTTTCTGATCTGAACAGCGCAAGGTTTTTGTGGAAGCGTATACCTGCAACTGTCAAACAAAGCCACCCTGAAGTAGTTGCTGCATGGAAGATTGGGCAATGCTTGTGGACCTATGACTATGCTGGTGTTCACGACGCTGTCCGAAGCTACAGTTGGAGCCCAGCCGTCCAACAAGTCGTGACTGCCTTTGGAGAGGATTATTTAAGGAAAAATATGAAGTTGCTATCTACGGCTTACTCAACTATCAGTGTCGATGATGCCGCTAAATTTTTGGGGTTAACAGAGGGTGAGACTATCAAATGCACTACCCAAGAA---GGCTGGGCCTTGGATGCCGCATCAAACATGCTTACTGTTCAG------CCTGCAATAACTGTGGCAGCCCAAAAGCTAGATTCTAGCAAGCTACAGAACTTGACAGAGTATGTCTTTCATCTTGAGCATTAA Pleopeltis_polypodioides_UJWU ------------------------------------------------------------------------------------------ATGGCTGTGACTGTGGACGGAGTGGGCGTGGTCGATCAT---------------CAGCAAACTGTGGAGAAGAAGCTTTCCTCTCTGCAAGAAGCCATCAAATCTGGCCGTTTTGCTGAGCTCGCAAGCTTATGCGAAGCCCTTGAACTCGAGCTTGCTGCAAAGGAAATGGAAAAGCCTTCTGATTGGCCTTATGCGATTCATCTGCTTGGACATATCTACGTTTCTGACTTGAATAGTGCAAGATTTTTGTGGAAGCGTGTATCCGCAGCTGTAAAACAGAGCCAGCCAGAATTTGTGGCTGCTTGGAAGATTGGGCAGTGCTTGTGGACTTATGATTATGCGGGGGTGCATGATGCTCTTCGAAGCTATTCTTGGAGTCCAGCTGTTCACCAAATTGTTACTGCCATAGGAGACGACTACTTCCAGAAGAATGTGAAGCTGCTGTCGACTGCGTACTCAACCATAAGTGTCGCTGATGCTGCTAAATTCCTGGGGCTAAAGGAGGCTGAGACCATTAAATGCACCACCCAAGAT---GGATGGACATTGGATCCGGCTTCAAATATGCTAACAGTTCAG------CCTGCGTCAACAGCAGCAGCTCAGAAGCTAGATTCGAGCAAGTTGCAGAACCTGACCGAGTACGTCTTCCATCTCGAACACTAA Polypodium_amorphum_YLJA ------------------------------------------------------------------------------------------ATGGCCGTGACTGTGGACGGAGTGGGCGTTGTCGATCAT---------------CAGCAATCTGTGGAGAAGAAGCTTTCCTCACTGCAAGAAGCCATTAAATCTGGCCGTTTTGCTGAGCTTGCAAGCTTATGCGAGGCCCTTGAACTCGAGCTTGCTGCAAAGGAAATGGAAAAGCCTTCTGATTGGCCTTATGCGATTCATCTGCTTGGACATATTTACGTTTCTGACTTGAATAGTGCAAGATTTTTGTGGAAGCGTGTACCCGCAGCTGTAAAACAGAGCCAGCCAGAAGTAGTGGCTGCATGGAAGATCGGGCAGTGCTTGTGGACTTATGATTATGCAGGGGTTCATGATGCTCTTCGAAGCTATTCTTGGAGTCCAGCTGTTCACCAAATTGTTACTGCCATAGGAGATGACTACTTCCAGAAGAATTTGAAGCTGCTTTCTACTGCTTACTCAACCATAAGCGTTGCTGATGCTGCTAAATTCCTAGGGCTAACGGAGGCTGAGACCATCAAATGCACCACCCAAGGT---GGATGGACGTTGGATGCGGCTTCAAATATGCTAACAGTTCAG------CCTGCAACAACAGCAGCAGCTCAGAAGCTAGATGCGAGCAAGTTGCAAAACTTGACCGAGTATGTCTTCCATCTCGAACACTGA Polypodium_glycyrrhiza_CJNT ------------------------------------------------------------------------------------------ATGGCCGTGACTGTGGACGGAGTGGGCGTGGTCGATCAT---------------CAGCAAACTGTGGAGAAGAAGCTTTCCTCACTGCAAGAAGCCATTAAATCTGGCCGTTTTGCTGAGCTTGCAAGCTTATGCGAGGCCCTTGAACTCGAGCTTGCTGCAAAGGAAATGGAAAAGCCTTCTGATTGGCCTTATGCGATTCATCTGCTTGGACATATTTACGTTTCTGACTTGAATAGTGCAAGGTTTCTGTGGAAGCGTGTACCCGCAGCTGTAAAACAGAGCCAGCCAGAAGTAGTGGCTGCATGGAAGATCGGGCAGTGCTTGTGGACTTATGATTATGCAGGGGTTCATGATGCTCTTCGAAGCTATTCTTGGAGTCCAGCTGTTCACCAAATTGTTACTGCCATAGGAGATGACTACTTCCAGAAGAATTTGAAGCTGCTTTCTACTGCTTACTCAACCATAAGCGTTGCTGATGCTGCTAAATTCCTAGGGCTAACAGAGGCTGAGACCATCAAATGCACCACCCAAGAT---GGATGGACCTTGGATGCGGCTTCAAATATGCTAACAGTCCAG------CCTGCAACAACAGCAGCAGCTCAGAAGCTAGATGCGAGCAAGTTGCAAAACTTGACCGAGTATGTCTTCCATCTCGAACACTAA Polypodium_hesperium_B_IXLH ------------------------------------------------------------------------------------------???????????????????????????????????????---------------?????????GTGGAGAAGAAGCTTTCCTCACTGCAAGAAGCCATTAAATCTGGCCGTTTTGCTGAGCTTGCAAGCTTATGCGAGGCCCTTGAACTCGAGCTTGCTGCAAAGGAAATGGAAAAGCCTTCTGATTGGCCTTATGCGATTCATCTGCTTGGACATATTTACGTTTCTGACTTGAATAGTGCAAGATTTTTGTGGAAGCGTGTACCCGCAGCTGTAAAACAGAGCCAGCCAGAAGTAGTGGCTGCATGGAAGATCGGGCAGTGCTTGTGGACTTATGATTATGCAGGGGTTCATGATGCTCTTCGAAGCTATTCTTGGAGTCCAGCTGTTCACCAAATTGTTACTGCCATAGGAGATGACTACTTCCAGAAGAATTTGAAGCTGCTTTCTACTGCTTACTCAACCATAAGCGTTGCTGATGCTGCTAAATTCCTAGGGCTAACAGAGGCTGAGACCATCAAATGCACCACCCAAG???????????????????????????????????????????????------???????????????????????????????????????????????????????????????????????????????????? Polypodium_hesperium_GYFU ------------------------------------------------------------------------------------------???????????????????????????????????????---------------??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CTGCTTGGACATATTTACGTTTCTGACTTGAATAGTGCAAGATTTTTGTGGAAGCGTGTACCCGCACCTGTAAAACAGAGCCAGCCAGAAGTAGTGGCTGCATGGAAGATCGGGCAGTGCTTGTGGACTTATGATTATGCAGGGGTTCATGATGCTCTTCGAAGCTACTCTTGGAGTCCAGCTGTTCACCAAATTGTTACTGCCATAGGAGATGACTACTTCCAGAAGAATTTGAAGCTGCTTTCTACTGCTTACTCAACCATAAGCGTTGCTGATGCTGCTAAATTCCTAGGGCTAACGGAGGCTGAGACCATCAAATGCACCACCCAAGAT---GGATGGACATTGGATGCGGCTTCAAATATGCTAACAGTCCAG------CCTGCAACAACAGCAGCAGCTCAGAA?????????????????????????????????????????????????????????? Polystichum_acrostichoides_FQGQ ------------------------------------------------------------------------------------------ATGGCCGTGACAGTGGAGGGGGTGGGCGTGGCCGATCAT---------------CAACAAATTGTGGAAAAGAAGATGGCGGCACTGCAAGAAGCGATCAACTCTGGCCGTTTTACTGAGTTTGCGAGCTTATGCGAGGCCCTTGAACTCGAGCTTGCTGCACAGGGAATGGAAAAGCCTTCTGATTGGCCTTATGCTATTCATCTGCTTGGACATATTTACATTTCTGACTTGAATAGTGCAAGATTTTTGTGGAAGCGCGTACCTGCAGCTGTAAAACAGAGCCAGCCTGAATTAGCTGCTGCATGGAAGATTGGGCAGTGCTTATGGACCTATGATTATGCAGGTGTTCATGATGCTCTTCGAAGCTATTCTTGGAGTCCAGCTGTTCACCAAATTGTTACTGCCATAGGAGACGACTATTCTCGGAAGAATTTGAAGTTGCTTTCTACCGCTTACTCAACTATTAGCGTTGCTGATGCGGCTAAATTCCTAGGGCTAATTGAGGCTGAGACCATCAAATGCACTACCCAAGAT---GGATGGACATTAGATGCTGTTTCAAATATGCTAACAGTTCAG------CCTGCAATAAGAGTGGCATCTCAGAAGCTAGATGCGAGCAAGTTACAAAACTTGACGGAGTATGTCTTCCATCTTGAACATTAA Psilotum_nudum_QVMR ------------------------------------------------------------------------------------------------------------------------------AAG---------------ATGCAGCAGGGGGAGATGAATGCTGGTTTGTTACATGATGCTATCAGTGCACATCGATTTGGAGATGTTGCAAGCATTTGTGATAATCTTGAACTGGAGTTGGCTGCCAAAGGAATTGCAAAACCTGATGATTGGCCATATTCAATCCATCTGATTGGATACATCTATGTGTCTGATATGAATGGTGCCAGATTTCTCTGGAAGCGTATACCTACTTCAGTAAAGCAGAGTCAGCCAGAGTTGGTTGCTGTTTGGAAGATAGGTCAGTGCATGTGGATGCATGATTATGCTGGTGTACATGAGGCTCTTTGCGGGTACAACTGGGGCCAGGATATTCAACCTCTAGTGGCAGCTGTTGCAGAGGATTATTCAAAGAGAATGTGCAAGCTGCTCTCAACTGCATATTCTACAATCAGTGTAGATGATGCTGCTGCATTCCTGGGGTTGACACACAGTGAGGCTATCCATTTTACCTTGCAACAA---GGTTGGACGTTGGACTCAACCTCTCAGATGTTGACTGTTAAG------CCACCTCCTCCAGTATCAGAACAGAAGTTAGATTCTAGCAAGCTGAAAAATTTGACAGAATATGTTTTCCAGTTGGAACACTGA Pteridium_aquilinum_Contig3446 ------------------------------------------------------------------------------------ATGACAATGGCTGTAACTGTGGACGGGGTAGCCATGGCTGATCAG---------------CCACAAGGTGTGGAGAAGAAGCTCTCCTCACTTCAAGAAGCCATCAATTCTGGTCGTTTCGCTGATCTTGCAAGTTTGTGCGAAGCTCTTGAACTCGAGCTTGCTTCAAAGGGACAAGAGAAGCCTGCCGATTGGCCTTATGCCATTCATTTGCTTGGACATATCTACATTTCGGATTTGAATAGTGCTAGATTTTTATGGAAGCGTATACCTGCAGCTGTTAAACAAAGCCAGCCTGAATTAGTTGCTGCATGGAAGATTGGGCAGTGCTTGTGGACCTATGATTATGCAGGTGTTCATGATGCTCTTCGAAGCTATTCCTGGAGTCCATCTGCTCACCAAATTGTGACTGCAATAGGAGATGATTATTCACGGAAGAATTTGAAGTTGCTTTCTACTGCTTACTCAACTATTGGCGTTGCTGATGCTGCTAAATTCTTGGGGTTAATGGAGGGTGAGACCATTACATCCACTACCCAAGAT---GGATGGACATTGGATCCTGTGTCAAACATGCTAACAGTTCAG------CCTGCAGTAACTGTGGCAGCTCAGAAGCTAGATTCGAGCAAGCTACAAAACTTGACAGAGTATACCTTCGAGGTTGAACATTAA Pteris_ensiformis_FLTD ------------------------------------------------------------------------------------------?????????????????????GTAGCCATGGCTGATCAA---------------CAGCAAGCCATGGAAAGGAAGCTCGCCTCCATACACGAAGCTATAAACTCTGGCCGTTTCCAAGAGCTTGCGAGCATCTGCGAAACCCTTGAACTGGAGCTTGCTGCAAAGGGACAAGAAAGGCCCAATGATTGGCCGTACGCTATTCATTTGCTTGGACACGTCTACAGTTCTGACTTAAGCAGTGCAAGATTCTTATGGAAGCGCATACCTGCAGCCGTCAAGCAAAGCCAGCCTGAGTTAGTTGCTGCATGGAAGATTGGTCAGTGCTTGTGGACGTATGATTATGCAGGTGTTCATGATGCTCTTCGTGGCTATTCTTGGAGTCCTGCTGTTCAGCAAATTGTGATTGCCATAAATGATGACTATTCACGAAAGAACATGAAATTGCTCTCTACTGCTTACTCCACCATCAGTGTGCCCGATGCAGCTAAGTTCCTGGGCTTGACAGAGAGTGAGACTATCAAAAATACCACCCAAAAT---GGATGGACA?????????????????????????????????------???????????????????????????????????????????????????????????????????????????????????? Pteris_vittata_POPJ ------------------------------------------------------------------------------------------???????????????????????????????????????---------------????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????AACGGTGCAAGGTTCTTATGGAAGCGTATACCTGCAACTGTCAAACAAAGCCACCCCGAGTTAGTTGCTGCATGGAAGATTGGTCAGTGCTTGTGGACCTACGATTATGCAGGTGTTCATGATGCTCTTCGTGGCTAT---TGGAGCCCTGCTGTTCAACCAATTGTGGTTGCCATAAAAGATGACTATGCACGGAAAAACATGAAATTGCTCTCGACTGCTTACTCCACCATTAGTGTTGCCGATGCAGCTAAGTTCTCGGGCTTGACAGAGAGCGAGACTGTCAAAA???????????????????????????????????????????????????????????------???????????????????????????????????????????????????????????????????????????????????? Sceptridium_dissectum_EEAQ ------------------------------------------------ATTGAGCTTCACACAGAGCTT---CACCATAGCCACCACAGA------------------------------------------------------ATGCAGCAGGGAGAAGACACCTTCAGTCTTCTGCATGACGCTATCAACTCCCGACGATTTGGAGACATCGCTGACATCTGTGACAACTTGGAGCTTGAGTTGGCTGCTAAAGCAATTGCAAGTCCTGATGACTGGCCATATTCTATTCATCTACTTGGGCACATCTATGTTTCTGATCTAAACAGTGCCAGATTTCTATGGAAGCGCACGCCTGCTACTATAAAACATAGTCAGCCAGAATTGGTTGCTGTTTGGAAGATAGGCCAGTGCATGTGGATGTATGACTATGCCGGTGTGCATAACGCTCTTCGTGGTTACAACTGGAGCCCAGAAGTGCAGCAGGTCGTAGCAGCTATAGCAGAGGATTATTCAAAGAGAATCTTTAAGCTCCTCACAACTGCCTATTCTACAATCAGTGTAGGTGATGCTGCAACATTTCTGGGTTTGACACAAAGTGAGACTGTTCAATGTGCCTTGCAACAG---G-????????????????????????????????????????------???????????????????????????????????????????????????????????????????????????????????? Sticherus_lobatus_XDVM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAGGTTTTTGGGTTTGACAGAGGATGAGGCTATCAAACGTACAACTCAAGAG---GGATGGACTTTGGATTCTGTTTCAAAAATGCTTACTGTTCAG------TTCACCAGTCCTGTTGCAAGCCAAAAGCTAGATTCTAGCAAGCTTCAAAACTTAACAGAGTACGTTTTTGATCTTGAACATTGA Thelypteris_acuminata_MROH ------------------------------------------------------------------------------------------ATGGCTGTGACGGTGGACGGGGTGGGCATGGCCGATCAT---------------CAGCAAGCTGTGGAGAAGAAGCTGGCCCAACTGCAAGAAGCCATCAATTCTGGCCGTCTCGCTGAGCTTGCAAGTTTATGCGAGGCCCTTGAACTTGAGCTGGCTGCGAAGGGAATGGAAAAGCCTTCTGATTGGCCTTATTCTATTCATCTGCTAGGACATATTTACCTTTCTGACCTAAATAGTGCAAGATTTTTGTGGAAGCGTATACCTGCAGCTGTAAAACAGAGCCAGCCTGAATTAGTCGCTGCATGGAAGATTGGTCAGTGCTTGTGGACCTATGATTATGCAGGTGTTCATGATGCTCTTCGAAGTTATTCTTGGAGTCCTGCTGTGCACCAAATTGTGACTGCCATAGGAGATGATTATTCACGGAAGAATTTGAAGCTGCTTTCTACAGCTTATTCAACTATAAGCGTTGCTGATGCTGCTAAATTCCTAGGGCTTACGGATGCTGAGACCATCAAATGCACTACCCAAAAC---GGATGGACATTGGATCCTTTTTCAAATATGCTAACAGTTCAG------CCTGTAATAACTGTGGCATCTCAGAAGCTGGATGCGAGCAAGCTACAAAACTTGACGGAGTATGTCTTCCATCTTGAACATTGA Thyrsopteris_elegans_EWXK ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTACGTTTCTGATCTGAACAGTGCGAGGTTTTTGTGGAAGCGTATGCCTACGACCGTGAAACAAAGCCACTCTGAAGTAGTTGCTGCATGGAAGATCGGACAATGCTTGTGGACCTATGACTATGCTGGTGTTCACGATGCTCTCCGAAGCTACACTTGGAGCCCAGCTGTCCAACAAGTCGTGACTGCCTTTGGAGAGGATTATTCAAGGAAAAATATGAAGTTGCTATCTACGGCTTACTCAACTATCAGTGTCGGTGATGCTGCTAAATTTTTGGGGTTAACAGAGGGTGAGACTATCAAATGCACTACCCAAGAA---GGATGGTTGTTGGATCCTGCTTCAAAAATGCTTACTGTTCAG------CCTGCAATAACTGTGGCATCCCAAAAGCTAGATTCTAGCAAGCTACAAAACTTGACAGAGTATGTCTGTCATCTTGAACATTGA Tmesipteris_parva_ALVQ ---------------------------------------------------------------------------------------AAG------------------------------------------------------ATGCAGCAGGGGGAGGTGAATGTTGGTTTGATACATGATGCTATTAGTGCACATAGATTTGGAGATATTGCAAGCATTTGCGATAATCTTGAACTCGAGTTGGCTGCCAAAGGAACTGCAAAGCCTGATGTCTGGCCATATGCAATCCATCTTATTGGATACATCTATGTGTCTGATATGAATGGTGCGAGATTTCTTTGGAAGCGTATACCTACTTCAGTAAAGCAGAGTCAGCCAGAGCTGGTTGCTGTTTGGAAGATAGGTCAGTGCATGTGGATGCATGATTATGCTGGTGTACATGAGGTTCTTCGTGGGTACAACTGGGGCCATGATATTCAACCTGTAGTGGCAGCTGTTGCAGAGGATTATTCAAAGAGAATATGCAAGCTGCTCTCAACTGCATATTCTACAATCAGTGTAGATGATGCTGCTGCATTCCTGGGATTGATACACAGCGAGACTATCCAATTTACCTTGCAACAA---GGTTGGGCTTTGGATTCAACATCTCAGATGTTGACTGTTAAA------CCAGCTCCTTCGGTATCAGAACAGAAGTTAGATTCTAGCAAGCTGACAAATTTGACAGAATATGTTTTCCAGTTAGAACACTGA Vittaria_appalachiana_NDUV ------------------------------------------------------------------------------------------ATGGCAGTGACCGTGGAGGGGATGGCCACGGCCGATCAA---------------TCACAAACTGTGGAAAGAAAGCTCGCTTCTATACAAGAAGCCGTCAACTCTGGCCGATTCCAAGAACTTGCAAGCATCTGTGAAGCTCTCGAGCTTGAGCTTGCTGCAAAAGGTTTGGAAAAGCCTGATGATTGGCCATACACCATCCATTTGCTAGGACATATCTACATGTCTGACTTGAATGGTGCAAGATTCTTATGGAAGCGGATACCAGGAGCTGCTAAACAAAACCAGCCTGAATTAGTTGCTGCATGGAAGGTCGGTCGATGCTTGTGGACACATAATTATGCAGGCGTTCATGATGCCCTTCAATCTTATACTTGGAGTCCTGCAATTCAGCAAATCATACTTGCCATTAAAGATGATTATTCGCAAAAGATCTTCAAATTGCTTTCAACAGCTTATGCTACTATCAGTGTTGCTGATGCAGCCAAGTTCTTGGGGCTGACAGAGAATGATACCGTGAAAAGGACAACCCAAATT---GGATGGGCGTTTGATCCCACTTTGAGCATCCTTACTGTTCAG------CCTCCTGTAAATGTGGCAGGGCAGAAGCTGGATTCAACCACGCTACAAGACTTAACGGAGTATGTATTCCACCTTGAGCATTAA Vittaria_lineata_SKYV ------------------------------------------------------------------------------------------ATGGCGGTGACCGTGGAGGGGATGGCCACGGCTGATCAA---------------TCGCAAACTGTGGAAAGAAAGCTCGCTTCTATACAAGAAGCCGTCAACTCTGGCCGATTCCAAGAACTTGCAAGCATCTGTGAAGCTCTCGAGCTTGAGCTTGCTGCAAAAGGTTTGGAAAAGCCTTATGATTGGCCATACACCATCCATTTGCTAGGATATATCTACATTTCCGACTTGAATGGTGCAAGATTCTTATGGAAGCGGATACCAGTAGCTGCTAAACAAAACCAGCCTGAATTAGTTGCTGCATGGAAGGTCGGTCGATGCTTGTGGACACATGATTATGCAGGCGTTCATGATGCCCTTCAATCTTATACTTGGAGTCCTGCAATTCAGCAAATCATACTTGCCATTAAAGATGATTATTCGCAAAAGATCTTCAAATTGCTTTCAACAGCTTATGCTACTATCAGTGTGGCTGATGCAGCCAAGTTCTTGGGGCTGACAGAGAATGATACTGTGAAAAGGACAACCCAAATT---GGATGGGCGTTTGATCCCGCTTTGAGCATCCTTACTGTTCAG------CCTCCAGTAAATGTGGCAGGGCAGAAGCTGGATTCAACCACGCTACAAGACTTAACTGAGTATGTGTTCCACCTCGAGCATTAA Woodsia_ilvensis_YQEC ------------------------------------------------------------------------------------------ATGGCTGTGACAGTGGAGGGGGTGGGCACGGCCGATCAT---------------CAGCAAGCTGTGGAGAAGAAGCTGGCCTCACTGCAAGAAGCCATCAACTCTGGCCATCTGGCGGACCTTGCAAGCTTATGCGAGGCCCTTGAACTCGAGCTTGCCGCGAAGGGAATGGAAAAGCCTTCTGATTGGCCTTATGCTATTCATCTGCTCGGACATATTTACGTTTCTGACTTGAATAGTGCAAGGTTTTTGTGGAAGCGTGTACCTGCAGCTGTAAAACAGAGCCAGCCTGAATTAGTTGCTGCATGGAAGATTGGGCAGTGCTTGTGGACCTATGATTATGCAGGTGTTCATGACGCTCTTCGAAGCTATTCTTGGAGCCCAGCTGTTCACCAAATTGTGACTGCCATAGGAGATGATTATTCACGGAGGAATTTGAAGCTCCTTTCTACGGCTTACTCAACAATAAGCGTTGCTGATGCTGCTAAATTTCTAGGGCTAATGGATGCTGAGACCATCAAATGCACTACCCAAGAT---GGATGGACATTGGATCCTGTTTCAAATATGCTAACAGTTCAG------CCTGCAATAACTGTGGCATCTCAGAAGCTAGATGCGAGCAAGCTACAAAACTTGACGGAGTACGTCTTCCATCTTGAACATTAA Woodsia_scopulina_YJJY ---------------------------------------------------------------------------------------------------------------GTGGGCATGGCCGATCAT---------------CAGCAAGCTGGGGAGAAGAAGCTGGCCTCACTGCAAGAAGCTATCAATTCTGGCCGTCTCGCTGAGCTTGCAAGTTTATGCGAGGCCCTTGAACTCGAGCTTGCTGCGAAGGGAATGGAAAAGCCTTCTGATTGGCCTTATGCTATTCATTTGCTCGGACATATTTACGTTTCTGACTTGAATAGTGCAAGATTTTTGTGGAAGCGTGTACCTGCAGCTGTAAAACAGAGCCAGCCTGAATTAGTTGCTGCATGGAAGATTGGGCAGTGCTTGTGGACCTATGATTATGCAGGCGTTTATGAAGCTCTTCGAAGCTATTCTTGGAGCCCAGCTGTTCACCAAATTGTGACTGCCATAGGAGATGATTATTCACGGAAGAATTTGAAGCTGCTTTCTACGGCTTACTCAACTATAAGCGTTGCTGATGCTGCTAAATTTCTAGGGCTAATGGATGCTGAGACCATCAAATGTACTACCCAAGAT---GGATGGACATTGGATCCTGTTTCAAATATGCTAACAGTTCAG------CCTGCAATAACTGTGGCATCTCAGAAGCTAGATGCGAGCAAGCTACAAAACTTGACGGAGTATGTCTTCCATCTTGAACATTGA Zea_mays_GRMZM2G107588_T01 ---------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGATCTCTCCGCTGTCCAGGCTGCCCTCTCCGACAAGTCCTACTCCACCCTCGCCTCCCTCTGCGACGAACTTCTCCTCCAGGCCGCGTCCCAGGGATTCACC---ACCGACGAATGGCCCTACTCTGTCCACCTGCTTGCCCACCTCTACATCAATGACCTGAACAGCGCGCGGTTCTTCTGGAAGTCGTTGCCGCAGGAGGTCAAGGACACGCGGCCGGAGCTCGCCGCTGTCTGGAGGATTGGTCAGTGCCTCTGGAAAAGAGATTATGCTGGCGTCAACACGGCTGCACAGGGGTTCGAGTGGGGTCCTGACCTCGCTGACTTCATCACTGCCTTCCTAGAGAGCTACAGACAGAGGATATTCAAGCTGTTGACTTCTGCATATTCCACAATTAGAGTTGCTGATGTGGCTCATTTCATGGGGATGAGTGAGGAGGATGCGACAAACTATGCTGTGCAAAAC---GGTTGGAGTTTGGATGCAGCGGCCAAGATGCTTACTGTCAAA------AAGCCAAAGTCTCAGACCAACCAGAAGCTTGATGCTAGCAAACTGCAGCGTTTGACTGAGTGTGTTTTCCACCTTGAGAACTGA ; END; BEGIN TREES; Title COP9_AT4G14110_v1.3_wtree.nex; LINK Taxa = Taxa; TRANSLATE 1 Adiantum_aleuticum_WCLG, 2 Adiantum_raddianum_BMJR, 3 Alsophila_spinulosa_GANB, 4 Amborella_trichopoda_scaffold00017.199, 5 Anemia_tomentosa_CQPW, 6 Angiopteris_evecta_NHCM, 7 Aquilegia_coerula_Aquca_00160.1, 8 Arabidopsis_thaliana_AT4G14110, 9 Argyrochosma_nivea_XDDT, 10 Asplenium_nidus_PSKY, 11 Asplenium_platyneuron_KJZG, 12 Athyrium_filixfemina_URCP, 13 Athyrium_sp_AFPO, 14 Azolla_caroliniana_cf_CVEG, 15 Blechnum_spicant_VITX, 16 Bolbitis_repanda_JBLI, 17 Botrypus_virginianus_BEGM, 18 Cedrus_libani_GGEA, 19 Crepidomanes_venosum_TWFZ, 20 Cryptogramma_acrostichoides_WQML, 21 Culcita_macrocarpa_PNZO, 22 Cystopteris_fragilis_LHLE, 23 Cystopteris_protrusa_YOWV, 24 Cystopteris_reevesiana_RICC, 25 Cystopteris_sp_XXHP, 26 Cystopteris_utahensis_HNDZ, 27 Davallia_fejeensis_OQWW, 28 Dennstaedtia_davallioides_MTGC, 29 Deparia_lobatocrenata_FCHS, 30 Didymochlaena_truncatula_RFRB, 31 Diplazium_wichurae_UFJN, 32 Dipteris_conjugata_MEKP, 33 Encephalartos_barteri_GNQG, 34 Equisetum_diffusum_CAPN, 35 Equisetum_hyemale_JVSZ, 36 Gaga_arizonica_DCDT, 37 Ginkgo_biloba_SGTW, 38 Gymnocarpium_dryopteris_HEGQ, 39 Homalosorus_pycnocarpos_OCZL, 40 Hymenophyllum_bivalve_QIAD, 41 Leucostegia_immersa_WGTU, 42 Lindsaea_linearis_NOKI, 43 Lindsaea_microphylla_YIXP, 44 Lygodium_japonicum_PBUU, 45 Myriopteris_rufa_GSXD, 46 Nephrolepis_exaltata_NWWI, 47 Notholaena_montieliae_YCKE, 48 Onoclea_sensibilis_HTFH, 49 Ophioglossum_petiolatum_WTJG, 50 Ophioglossum_sp_QHVS, 51 Osmunda_javanica_VIBO, 52 Osmunda_sp_UOMY, 53 Parahemionitis_cordata_ZXJO, 54 Phlebodium_pseudoaureum_ZQYU, 55 Phymatosorus_grossus_ORJE, 56 Pilularia_globulifera_KIIX, 57 Pityrogramma_trifoliata_UJTT, 58 Plagiogyria_japonica_UWOD, 59 Pleopeltis_polypodioides_UJWU, 60 Polypodium_amorphum_YLJA, 61 Polypodium_glycyrrhiza_CJNT, 62 Polypodium_hesperium_B_IXLH, 63 Polypodium_hesperium_GYFU, 64 Polystichum_acrostichoides_FQGQ, 65 Psilotum_nudum_QVMR, 66 Pteridium_aquilinum_Contig3446, 67 Pteris_ensiformis_FLTD, 68 Pteris_vittata_POPJ, 69 Sceptridium_dissectum_EEAQ, 70 Sticherus_lobatus_XDVM, 71 Thelypteris_acuminata_MROH, 72 Thyrsopteris_elegans_EWXK, 73 Tmesipteris_parva_ALVQ, 74 Vittaria_appalachiana_NDUV, 75 Vittaria_lineata_SKYV, 76 Woodsia_ilvensis_YQEC, 77 Woodsia_scopulina_YJJY, 78 Zea_mays_GRMZM2G107588_T01; TREE bestREP2 = (14:0.28218102,(((((((11:0.03370209,10:0.07880794):0.1463632,((38:0.01604009,(((24:0.00153594,22:0.00154375):0.00149016,26:0.00472286):0.00368909,(25:1.0E-8,23:1.0E-8):0.00783625):0.01541856):0.01637114,(((77:0.01382128,76:0.02131314):0.00461857,(29:0.01251153,(71:0.04483114,(48:0.02413615,15:0.01744872):0.00182741):0.00126828):0.00210882):1.0E-8,((12:0.00342048,13:1.0E-8):0.00474249,31:0.00955214):0.00308146):0.00867925):0.00192502):0.00384691,(30:0.04037516,(41:0.06043329,(((27:0.05130753,(55:0.04925253,(((54:0.01971793,60:0.00631607):1.0E-8,(63:0.00533124,(61:0.00419393,62:1.0E-8):0.00209524):0.00145978):0.00552152,59:0.04434626):0.00623116):0.02404039):0.0192853,46:0.05748341):0.00764904,(16:0.08394787,64:0.03469272):0.00548085):0.00433569):0.00213802):0.00844795):0.05264784,(66:0.05753222,(39:0.04680224,28:0.02721127):0.01693139):0.01446388):0.0053978,((20:0.14313968,(67:0.05214927,(68:0.05634428,57:0.0918128):0.01224908):0.03734853):0.00844197,((((47:0.03573282,(53:0.04704134,36:0.03657071):0.02178499):0.02245603,9:0.06974668):0.00482792,45:0.04551298):0.04140839,(2:0.07795758,(1:0.02275671,(74:0.01519846,75:0.01052776):0.17546095):0.01056041):0.01337108):0.03199973):0.09340481):0.03687139,(43:0.01012576,42:0.01163992):0.19560257):0.06141659,(3:0.06743281,((((70:0.14247643,((19:0.08824434,40:0.03715134):0.12918391,(32:0.15704906,((51:0.02736286,(6:0.15569929,(((35:0.00941941,34:0.03559605):0.4557759,(((78:0.61884014,(8:0.37429753,7:0.27447777):0.10823048):0.12032356,4:0.20080627):0.18606446,(18:0.16375067,(37:0.05473866,33:0.14277719):0.02263735):0.06211581):0.29328671):0.08415192,(((17:0.01332043,69:0.03063664):0.0278138,(50:0.03771,49:0.01310104):0.28911164):0.0632153,(73:0.04549374,65:0.02675509):0.14873374):0.03638219):0.05453147):0.09080078):0.0185383,52:0.01500264):0.11759812):0.00709046):0.05199882):0.04679928,(5:0.27548471,44:0.23931694):0.02055348):0.10156652,(58:0.01742521,21:0.01977778):0.01992927):0.00326055,72:0.03524182):0.00861183):0.02427818):0.07744701,56:0.18060719); END; begin sets; charset exclude = 1 - 90 130 - 144 628 - 630 673 - 678 760 - 762; charset codonPos1 = 1 - 760 \ 3; charset codonPos2 = 2 - 761 \ 3; charset codonPos3 = 3 - 762 \ 3; end; begin mrbayes; set autoclose = no nowarn = yes; exclude 1 - 90 130 - 144 628 - 630 673 - 678 760 - 762; charset codonPos1 = 1 - 760 \ 3; charset codonPos2 = 2 - 761 \ 3; charset codonPos3 = 3 - 762 \ 3; partition currentPartition = 3 : codonPos1 , codonPos2 , codonPos3; set partition = currentPartition; lset applyto = ( 1 , 2 , 3 ); lset nst = 6 rates = invgamma; unlink statefreq = ( all ) revmat = ( all ) shape = ( all ) pinvar = ( all ); prset applyto = ( all ) ratepr = variable; mcmcp ngen = 10000000 relburnin = yes burninfrac = 0.25 printfreq = 1000 samplefreq = 1000 nchains = 4 savebrlens = yes; mcmc; sumt; END; BEGIN ASSUMPTIONS; TYPESET * UNTitle COP9_AT4G14110_v1.3_wtree.nex; END; BEGIN CODONS; CODESET * UNTitle COP9_AT4G14110_v1.3_wtree.nex; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTitle COP9_AT4G14110_v1.3_wtree.nex; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; Title COP9_AT4G14110_v1.3_wtree.nex; tell ProjectCoordinator; timeSaved 1430009666228; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 686600637640983745; tell It; setDefaultOrder 62 6 17 2 9 35 3 4 66 44 29 58 0 10 61 26 5 18 53 64 42 30 73 50 68 23 39 33 14 49 54 31 19 7 27 11 51 22 38 47 63 36 70 41 20 37 69 24 65 46 60 57 77 76 40 28 55 59 56 72 8 25 21 16 48 45 15 43 12 67 32 13 1 34 52 74 71 75; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 4335275884272592975; checksumv 0 2 3086238029 null getNumChars 762 numChars 762 getNumTaxa 78 numTaxa 78 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 965731.0 sumSquares -4.6116860184270203E18 NumFiles 1 NumMatrices 1; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1280 716; setLocation 0 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #686600637640983745 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 2009.1430009622662.5909283653019791552; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1180 649; setLocation 0 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(((35:0.00941941,34:0.03559605):0.4557759,((((17:0.01332043,69:0.03063664):0.0278138,(50:0.03771,49:0.01310104):0.28911164):0.0632153,(73:0.04549374,65:0.02675509):0.14873374):0.03638219,(6:0.15569929,(51:0.02736286,(52:0.01500264,(32:0.15704906,((19:0.08824434,40:0.03715134):0.12918391,(70:0.14247643,((5:0.27548471,44:0.23931694):0.02055348,((58:0.01742521,21:0.01977778):0.01992927,(72:0.03524182,(3:0.06743281,(((((((11:0.03370209,10:0.07880794):0.1463632,((38:0.01604009,(((24:0.00153594,22:0.00154375):0.00149016,26:0.00472286):0.00368909,(25:1.0E-8,23:1.0E-8):0.00783625):0.01541856):0.01637114,(((77:0.01382128,76:0.02131314):0.00461857,(29:0.01251153,(71:0.04483114,(48:0.02413615,15:0.01744872):0.00182741):0.00126828):0.00210882):1.0E-8,((12:0.00342048,13:1.0E-8):0.00474249,31:0.00955214):0.00308146):0.00867925):0.00192502):0.00384691,(30:0.04037516,(41:0.06043329,(((27:0.05130753,(55:0.04925253,(((54:0.01971793,60:0.00631607):1.0E-8,(63:0.00533124,(61:0.00419393,62:1.0E-8):0.00209524):0.00145978):0.00552152,59:0.04434626):0.00623116):0.02404039):0.0192853,46:0.05748341):0.00764904,(16:0.08394787,64:0.03469272):0.00548085):0.00433569):0.00213802):0.00844795):0.05264784,(66:0.05753222,(39:0.04680224,28:0.02721127):0.01693139):0.01446388):0.0053978,((20:0.14313968,(67:0.05214927,(68:0.05634428,57:0.0918128):0.01224908):0.03734853):0.00844197,((((47:0.03573282,(53:0.04704134,36:0.03657071):0.02178499):0.02245603,9:0.06974668):0.00482792,45:0.04551298):0.04140839,(2:0.07795758,(1:0.02275671,(74:0.01519846,75:0.01052776):0.17546095):0.01056041):0.01337108):0.03199973):0.09340481):0.03687139,(43:0.01012576,42:0.01163992):0.19560257):0.06141659,(14:0.28218102,56:0.18060719):0.07744701):0.02427818):0.00861183):0.00326055):0.10156652):0.04679928):0.05199882):0.00709046):0.11759812):0.0185383):0.09080078):0.05453147):0.08415192):0.146643355,(((78:0.61884014,(8:0.37429753,7:0.27447777):0.10823048):0.12032356,4:0.20080627):0.18606446,(18:0.16375067,(37:0.05473866,33:0.14277719):0.02263735):0.06211581):0.146643355);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #4335275884272592975 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1180 649; setLocation 0 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.SortTaxa.SortTaxa.taxaSort; endTell; setTool mesquite.charMatrices.SortTaxa.SortTaxa.taxaSort; colorCells #mesquite.charMatrices.ColorByState.ColorByState; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;