#NEXUS [written Thu May 07 14:28:06 CEST 2015 by Mesquite version 2.75 (build 564) at oek-pc8/141.51.190.68] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=36; TAXLABELS Hyphodontia_borbonica_L93_KR349240 Hyphodontia_arguta_KR349242 Hyphodontia_arguta_KR349243 Hyphodontia_borbonica_L693_KR349241 Hyphodontia_vietnamensis_JX175044 Hyphodontia_abieticola_DQ340331 Hyphodontia_astrocystidiata_JN129972 Hyphodontia_barbajovis_DQ873609 Hyphodontia_erastii_JX857800 Hyphodontia_floccosa_DQ873618 Hyphodontia_heterocystidiata_JX175046 Hyphodontia_microfasciculata_JN129976 Hyphodontia_niemelaei_EU583422 Hyphodontia_nothofagi_AF145583 Hyphodontia_pallidula_DQ340317 Hyphodontia_radula_AF145581 Hyphodontia_radula_AF145580 Hyphodontia_rimosissima_DQ873627 Hyphodontia_sambuci_DQ340326 Hyphodontia_tropica_AF145587 Schizopora_flavipora_AF145585 Schizopora_paradoxa_AF145571 Hyphodontia_abieticola_DQ873601 Hyphodontia_alutaria_EU118631 Hyphodontia_crustosa_KC460313 Hyphodontia_heterocystidiata_JX175045 Hyphodontia_juniperi_JX175047 Hyphodontia_nothofagi_GQ411524 Hyphodontia_pallidula_KJ140566 Hyphodontia_rimosissima_KJ140600 Hyphodontia_tropica_KC414243 Hyphodontia_aspera_DQ873606 Hyphodontia_cineracea_DQ340336 Hyphodontia_hastata_DQ340311 Lagarobasidium_calongei_NR119737 Lagarobasidium_detriticum_FM876211 ; END; BEGIN CHARACTERS; TITLE 'Matrix in file "Alignment.nexus"'; DIMENSIONS NCHAR=765; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Hyphodontia_borbonica_L93_KR349240 -GAGGATCATTATCGAGTTTGAAGTGGGTCTTTGTAGCTGGTCTATGGACAT------CGTGCTCGG------------------GCCCCGCTC-CAAATCCATTCAACCCCTGTGCACT--TTCGGAGTGGCGG---------------------------GTGACY---TGTT-------------------GGTCGC--TCGTGGCTTCGTCTCT--------TATCACAAACCCAAGTGTTATTATTGTTATTGTAGAACGT------------------GGAAACACACAATATAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTGGACTTGTTTCAGGAGCATGCCTGTTTGAGTGTCATG-AAATCATCAACCACGT-----TGCTTTTTTTACTTCC---------GTGGCTT-GGACTTGGGGACT------TGCTGGCGTT---TTGCCGTCGGCTTCCTTTGAATGCATTAGTCGAGGTG------CCT--------TGCTCGAGA------CGTGTGAT----AATTATCATTCACGGACCGACGAGGAGCTTGTCT------------CGGCTT-CTAACCGCGCAATAATGACACATC---------------------------------------------------------------- Hyphodontia_arguta_KR349242 ------------AAGGATC--ATTATCGAGTTTGAAGTGGGCCTTTG-AGCT---GGCTGGATTCGTTCAGTATGCGTGCTCGAGGCCCCGCTCC--AATCCACTCAATCCCTGTGCACT--TTCGGAGTGGC-----------------------------GAGTGGGATCGCAA-----------------G-GTCTTGCTCGTGGCTTCGTCTCTTA--------TCACAAACCAGTTTATTAT-TG---TCATGTAGAACGT-GGAT-GCCT-GTAAAGGCG-GAAACTCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGATTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTGGACTTGTTTCAGGAGCATGCCTGTTTGAGTGTCATG-AAATCATCAACCACGAT-----GCCTTATTGGGTG--------TCGCTGGCTT-GGACTTGGGGATC------TGCTGGCTT--GTCAAGAGTCGGCTTCCCTTGAATGCATTAGTCGGGT-----GCC--T--------TGCTCGAGA------AGTGTGAT----AATT-A--TCATT-CAC-TGATCGTCGAGGAGCTTTGTCTC------GGCTT-CTAACC-GCATTGGAAACGATGCAACTTTGACACATCTGACCTC-AAAT-CAGGTAGGACT--ACCCGCTGAACTTAAGCATATGA-- Hyphodontia_arguta_KR349243 ------------AAGGATC--ATTATCGAGTTTGAAGTGGGCCTTTG-AGCT---GGCTGGATTCGTTCAGTATGCGTGCTCGAGGCCCCGCTCC--AATCCACTCAACCCCTGTGCACT--TTCGGAGTGGC-----------------------------GAGTGGGATCGCAA-----------------G-GTCTTGCTCGTGGCTTCGTCTCTTA--------TCACAAACCAGTTTATTAT-TG---TCATGTAGAACGT-GGAT-GCCT-GTAAAGGCG-GAAACTCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGATTTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTGGACTTGTTTCAGGAGCATGCCTGTTTGAGTGTCATG-AAATCATCAACCACGAT-----GCCTTATTGGGTG--------TCGCTGGCTT-GGACTTGGGGATC------TGCTGGCTT--GTCAAGAGTCGGCTTCCCTTGAATGCATTAGTCGGGT-----GCC--T--------TGCTCGAGA------AGTGTGAT----AATT-A--TCATT-CAC-TGATCGTCGAGGAGCTTTGTCTC------GGCTT-CTAACCTGCATTGGAAACGATGCAATTTTGACACATCTGACCTC-AAAT-CAGGTAGGACT--ACCCGCTGAACTTAAGCATATGA-- Hyphodontia_borbonica_L693_KR349241 ----GATCATTATCGAGTTTGAAGTGGGTCTTTGTAGCTGGTCTATGGACAT------CGTGCTCGG------------------GCCCCGCTC-CAAATCCATTCAACCCCTGTGCACT--TTCGGAGTGGCGG---------------------------GTGACY---TGTT-------------------GGTCGC--TCGTGGCTTCGTCTCT--------TATCACAAACCCAAGTGTTATTATTGTTATTGTAGAACGT------------------GGAAACACACAATATAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTGGACTTGTTTCAGGAGCATGCCTGTTTGAGTGTCATG-AAATCATCAACCACGT-----TGCTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Hyphodontia_vietnamensis_JX175044 AAGGATCATTTGATGAATTTGTTAGTGGGACTTGATGCTGGCAGTCAAAT-G----CATGTGCTCGG-------------------TCTCCGATTCAAATCCACTCTACACCTGTGCACT--TTCAAAGCTCTGT----------AGT---CCTCCGTAATGGGAGCC----GTGATCGA-----A-------AGGTCG---CTGGGGCTGCACCTTTGCCCATATCATTACAAACAT------TGTATATTGTCTTGTAGAATGTCTAACGGCCT---TCAATGGCTTAACATAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTAT-TCCGAGGAGCATGCCTGTTTGAGTGTCATT-AAATCATCAATCCCTC---AGTCTT----TGTTGATT-------GTGCGGATT-GGACTTGGGGACT------TGCTGGTGT------TAAACTGGCTTCCCTCAAATGCATTAGCTGGAGCA-----TTGC--------GAGCAGCATATATGCGGTGTGAT----AATA-TCTTCACTGTGT-AGCTCTCGTTCAAGTC------------TGGCTT-CAAATCGTCC-TTCAGTTGGACAGC-TTTTGACAACTTGACCTC-AAAT-CAGGTAGGACT--ACCCGCTGAACTTAAGCATATCA-- Hyphodontia_abieticola_DQ340331 ATTATCGAGTTTTTGAAGT--GGGATTTTGATGCTGGCCAGTCCTCGGACGG---GCATGTGCTCGG------------------TCCCCGCTC--AAATCCACTCAACCACTGTGCACTAATTCGAAGCTTTG----------CGGTCCTCCCCG--AAAGGGGAGCAGCTCCCCCCTTATC----------GGGGTCGAGCCGGGGCTT-GCGGGG----------CTTCGAGCCTTTATCATACAA--ACTACTTTATTGTCT-TGTA-GAAT-GTGAACTTA-TTGAAAAAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTAT-TCCGAGGAGCATGCCTGTTTGAGTGTCATGCTAATCATCAACCCCCTCG-TTCGCTTTTGCGGATG--------CGGGTGGCTT-GGAATTGGAGG--ATTCATTGTCGGCTCT-CTATCGAGTCGACTCCTCTTGAAGACATTAGTCGGAA-CTCGGTCGCT--------CCGTCGCGGTAC-GCGGTGTGAT----AACT-TATTCACC-CAT-CGGTAAACCCGCTTCAACGCGTCCGG-CTGGCTT-CTAACCCGCGCTTCAGT-CGCA-ACTCTTGACA-ATCTGACCTC-AAAT-CAGGTAGGACT--ACCCGCTGAAC-------------- Hyphodontia_astrocystidiata_JN129972 AAGGATCATTATTGAGTTTTG--AAGTGGGCTTGATGCTGGCGCCTTCACCG-GCGCATGTGCTCAG-------------------CCCCGCTCTCAAATCCACTCAACACCTGTGCACT--TTCAAAGC--TGT----------AGT---CCTCCGTAATTGGAGCC----GCGGGTCAGCGAT--------GACCTG---CTGGGATTGCGC-TTTGCCCT--TTATCACAAACTA------TATGCATTGTCTTGTAGAATGTA--TTAGCCT-CATTGTGGGCGAAACTTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTAT-TCCGAGGAGCATGCCTGTTTGAGTGTCGTG-AAATTATCAAACTCCC----ATTCTTTGTTGAAAGG----------TGAGCTTTGGACTTGGGGACT------TGTTGGTTTT-----C-AATCAGCTTCCCTTGAATGCATTAGCTGGACTT-----TGAT--------TTGCAGCATATATGCGGTGTGAT----AATG-TCGTCACTGTGT-AGCTCAAGTCGT---T------------TGGCTTTCTAATCGTCCCTTCACAAGGACAA--TCTGATCAATTAGACCTC-AAAT-CAGGTAGGACT--ACCCGCTGAACTTAAGCATATC--- Hyphodontia_barbajovis_DQ873609 --------------GAGGG--GGAGTTCTGATTGATGCTGGCCTTTC--GGG---GCATGTGCTCGTCGGATTTTCTTTCTTT-TTCTTTGCTCCAAAATCCACTCAACCACTGTGCACTAATTCGAAGCCTTTTCCATTCGTTCGGTCCTCCCCGTCAAAAGGGAGCAGCTCCTCTTTCTCTTTCGGGGGGAAGGGTTGAGTCGGGGCTTAGCGGAAGGGAA-AGGTTTTCGAGCCTTTTTCATACAAAAACTATTATATTGTCT-TGTA-GAAT-GTTTATTAC-TATWGAAAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATYGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTAT-TCCGAGGAGCATGCCTGTTTGAGTGTCATG-TAATCATCAAACCCCCC--TTCCGTTTTGTAATAAAAGCGGGTCGGACGGTTT-GGACTTGGAGGTTATTAAATGTTGGCTTT-CA--CGAGTCGACTCCTCTTGAAAACATTAGTCGGGACTTCGGTCGCT--------CCGTCGCGGTAC-GCGGTGTGAT----AATT-TATTCACC-CAT-CGGTAAACCCGCTTCT-TGCGTCCGG-CTGGCTT-CTAACTCCTGTTTTATTTTGCG-ACTCTTTAC----TGAGTTTT-GTAA-AAGAAACCATTTGACAATCTGGCCTCA?A?TCTGGT-- Hyphodontia_erastii_JX857800 -----------------------A-CAGGACTTGATGCTGGTCTCCGCATTGGAGGCATGTGCTCAG-------------------TTCTAA---TCGTTCCATTCAACACCTGTGCACT--TTCAAAGC--TGT----------AGT---CCTCCGTCAAGGGAGCC----GCG-TCTTGTAATG-------AGA-TG---CTGGGATTACAC-TTTGCCC---TTATCATAAACAC------TAT-TAAAGTC-TGTAGAATGT-TAATAGCCT-----AAAGGCTTAATCTA-TACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACTCCTTGGTAT-TCCGAGGAGTATGCCTGTTTGAGTGTCTTT-AAATCATCAATCTAGC---TTTGCT----TTTGTGAA-------G-TTGGATT-GGATTTGGGGA-T------TGCTGGTG-------AAAGCTAGCTTCCCTTGAATGCATTAGTAGGACCG-----AGTT--------GCAACGC-TACGTGTGGTGTGAT----AATA-TCTTCACTGCAT-AGTTGTAAT-GAAGTT------------TGGCTT-CCAACCGTCC-TTCA-CTGGACAAT-TATTGACCATTGGACCTC-GAAT-CAGGTAGGACT--ACCCGCTGAACTTAAGCATATCA-- Hyphodontia_floccosa_DQ873618 -------------GGAAAG--GGGATT---ATTGATGCTGGCTGCTCCGG?G---GCATGTGCTCGG-----------------TCCTCTGCTC---AATCCACTCAACCACTGTGCACTAATTCGAAGC-TTCGCGGTCCTCCCGAACCTGGTTC------GGGAGCAGCTCCCCCTTTC--------GCGAGGGGTTGAGTCGGGGCCT-GCGGGG----------TTTCGAGCC---TTCATACAA--ACCACT-TCTTGTCA-TGTA-GAAT-GTT-ATTAT-ATTGAAAAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTAT-TCCGAGGAGCATGCCTGTTTGAGTGTCATG-TAATCATCAA-CCTCCC--TTCGCTTTTGCGTTCG---------GGATGGCTT-GGAATTGGAGGTTTCT---TGTCGGCTCT-CG--CGAGTCGGCTCCTCTTGAAGACATTAGTCGGA--CTCGGTCGCT--------CCGTCGCGGTAC-GCGGTGTGAT----AACT-TATTCACC-CAT-CGGTAAACCCGCCTCT-TGCGTCCGG-CTGGCTT-CTAACTCGCGCTTCGGCGCACC-TTTGACAAT----CTGACCTC-AAAT-CAGGTAGGACT--ACCCGCTGAACTTAA-GCATATC-- Hyphodontia_heterocystidiata_JX175046 ---------------------------------------------------G-GTGCATGTGCTCGG-------------------CCCCGCTCTCAAATCCACTCAACACCTGTGCACT--TTCAAAGT--TGT----------AGTTCCCCTTCGTTGAAGGAGCGAGAAGTGAGCCAGCAAT--------GGCTTGCTTTTGGAGCTACGC-TTTGCCAT--T-ATCACAAACCA------TTAGCTCTGTCTTGTAGAATGTAACTTAGCCTTCTCTGAGGGTGAAATGTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTAT-TCCGAGGAGCATGCCTGTTTGAGTGTCGTG-AAATTATCAACTCCCT---TTTTCTTTGTTGAAAAGG--------GTGAGCTT-GGACTTGGAGA-C------TGCTGGTGTC-----T--GTCAGCTTCTCTTGAATGCATTAGCTGGACCTA----TGAT--------TTGCAGCATATATGCGGTGTGAT----AATG-TCGTCACTGCAT-CGCTCGAGTCGAA-TC------------TGGCTT-CTAATTGTCT---CTCTGAGACAGC-TTTGATCAATCTGACCTC-AAAT-CAGGTAGGACT--ACCCGCTGAACTTAAGCATATCA-- Hyphodontia_microfasciculata_JN129976 AAGGGTCATTCAATGAATTTG-AA-CGGGACTTGATGCTGGTCTGCTC-TGGTGGACATGCGCTCGG-------------------TTCTTC---TCAATCCATTCAACACCTGTGCACT--TTCAAAGT--TGG----------AAT---CCTCCGTCATGGGAGCT----GCGGTCTTGTAATG-------GGACTG---CTGGGACTTTGC-TTTGCCCA--TTATCACAAACCA------ATT-TGAAGTCATGTAGAATGT-AACTAGCCT-----AAGGGCTTAATCTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTAT-TCCGAGGAGTATGCCTGTTTGAGTGTCTTG-TAATCATCAATCTAAC---ATTGCT----TTTGTGAT-------G-CTGGATT-GGATTTGGAGA-C------TGCTGGTCTT-----ACGATTGGCTTCTCTTGAATGCATTAGTTGAATCG-----AGTT--------GCAACGC-TACGTGTGGTGTGAT----AATA-TCTTCACTGCAT-AGTTGTAAT-GACGTT------------TGGCTT-CTAACCGTCC-TTCA-GTGGACAAT-ACTTGACCATTTGACCTC-AAAT-CAGGTAGGACT--ACCCGCTGAACTTAAGCATATCA-- Hyphodontia_niemelaei_EU583422 AAGGATCATTATTGAGTTTTG--AAGTGGGCTTGATGCTGGCACCTTCAC-G-GTGCATGTGCTCAG-------------------CCCCGCTCTCAAATCCACTCTACACCTGTGCACT--TTCAAAGTC-TGT----------GGT---CCTCCGTAATGGGAGTC----GTAAGTCTTAATT--------GACTTG---CTGGGACCGCGC-TTTGCCCT--TTATCACAAACTA------TATGCATTGTCTTGTAGAATGT---CTAGCCT-CATCGTGGGCGAAACTTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTAT-TCCGAGGAGCATGCCTGTTTGAGTGTCGTG-AAATCATCAA-CTCCT----TTACTTTATTGTGAAG----------CGAGCTT-GGATTTGGAGA-C------TGCTGGTGCA-----A--ATCAGCTTCTCTTGAATGTATTAGCTGGAATT-----CAGT--------TTGCAGCATATATGCGGTGTGAT----AATG-TCGTCACTGCGT-AGCTGGTATTCTG--T------------TGGCTT-CTAATCGTCC-TTTACTTGGACAA--CTTGATCATTCTGACCTC-AAAT-CAGGTAGGACT--ACCC--------------------- Hyphodontia_nothofagi_AF145583 -------------------------------TTGATGCTGGTAT-TTAAC-G-ATGCATGTGCTCAG-------------------CCCCGCTCTCAAATCCACTCAACACCTGTGCACT--TTCAAAGT--TGT----------AGT---CCTCCGTAATGGGAGTC----GCAAGTCATTAT---------GATTTG---TTGGGACTGCAC-TTTGCCAT--TTATCACAAACTA------TATGCATTGTCTTGTAGAATGA---ATAGCCT-CATAGTGGGCGAAAATTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTAT-TCCGAGGAGCATGCCTGTTTGAGCGTCGTG-AAATTATCAA-CTCCT----TTTCTTTATTGAAAGG----------TGAGCTT-GGACTTGGGGA-T------TGCTGGTGCA-----A--ATCAGCTTCTCTTGAATGCATTAGCTGGAATT-----TGAT--------TCGTAGCATATATGCGGTGTGAT----AATG-TCGTCACTGTGT-AGCTTGAATTGT---C------------TAGCTT-CTAATCGTCC-TTCACG-GGACAA--TTTGATCTTTTTGACCTC-AAAT-CAGGTAGG------------------------------ Hyphodontia_pallidula_DQ340317 ------------AAGGATC--ATTATCGAGTTTGAAGTGGGCCTTTG-AGCT----------CTCGT-------ACGTGCTCG-GGCCCCGCTCC--AATCCACTCAACCCCTGTGCACT--TTCGGAGTTGC-----------------------------GGGTC--ACTGTTA-----------------A-CGCAGTCTCGTGGCTTCGTCTCTTA--------TCACAAACCA-TTTATTATATG---TCTTGTAGAACGT-GGAT-GCCT-GTAAAGGCG-GAAACTCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTGGACTTGTTTCAGGAGCATGCCTGTTTGAGTGTCATG-AAATCATCAACCACGTT-----GCTTTAGTG--CG--------CCG-TGGCTT-GGACTTGGGGATT------TGCGGGCG---TTCTAGCGTCGGCTTCCCTTGAATGCATTAGTCGGGC-----GCCCTT--------TGCTCGAGA------AGTGTGAT----AATT-A--TCATT-CAC-TGATCGACGAGGGACCTTGTCTC------GGCTT-CTAACC-GCAT--GCTTGCATGCATCTTTGACACATCTGACCTC-AAAT-CAGGTAGGACT--ACCCGCTGAAC-------------- Hyphodontia_radula_AF145581 -------------------------------TTGATGCTGGTGTCTTAAC-G-ATGCATGTGCTCAG-------------------CCCCGCTCTC--ATCCACTCAACACCTGTGCACT--TTCAAAGT--TGT----------AGT---CCTCCGTAATGGGAGTC----GCAGGTCTTTTT---------GACTTG---TTGGGACTGCAC-TTTGCCAT--TTATCACAAACTA------TATACATTGTCTTGTAGAATGT---TCAGCCT-CATTGTGGGCGAAACTTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTAT-TCCGAGGAGCATGCCTGTTTGAGTGTCGTG-AAATTATCAA-CTCCC----TTTCTTTATTGAAGGG----------TGAGCTT-GGACTTGGGGA-T------TGCTGGTGCA-----A--ATTGGCTTCCCTTGAATGTATTAGCTGGAATT-----TAAT--------TCGCAGCATATATGCGGTGTGAT----AATG-TCGTCACTGTGT-AGCTCGGATTGT---C------------TGGCTT-CTAATCGTCC-TTCACG-GGACAA--TTTGATCTTTTTGACCTC-AAAT-CAGGTAGG------------------------------ Hyphodontia_radula_AF145580 -------------------------------TTGATGCTGGTATCTTAAC-G-ATGCATGTGCTCAG-------------------CCCCGCTCTC--ATCCACTCAACACTTGTGCACT--TTCAAAGT--TGT----------AGT---CCTCCGTAATGGGAGTC----GCAGGTCTTTTTT--------GACTTG---TTGGGACTGCAC-TTTGCCAT--TTATCACAAACTA------TATACATTGTCTTGTAGAATGT---TCAGCCT-CATTGTGGGCGAAACTTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTAT-TCCGAGGAGCATGCCTGTTTGAGTGTCGTG-AAATTATCAA-CTCCC----TTTCTTTATTGAAGGG----------TGAGCTT-GGACTTGGGGA-T------TGCTGGTGCA-----A--ATTGGCTTCCCTTGAATGTATTAGCTGGAATT-----TGAT--------TCGCAGCATATATGCGGTGTGAT----AATG-TCGTCACTGTGT-AGCTCGGATTGT---C------------TGGCTT-CTAATCGTCC-TTCACG-GGACAA--TTTGATCTTTTTGACCTC-AAAT-CAGGTAGG------------------------------ Hyphodontia_rimosissima_DQ873627 AAGGATCATTATTGAGTTTTG--AAGTGGGCTTGATGCTGGCGTCTTCACCG-ATGCATGTGCTCAG-------------------CCCCGCTCTCAAATCCATTCAACACCTGTGCACT--TTCAAAGT--TGT----------GGT---CCTCCGTAATGGGAGCT----GCAGGTCTTTATT--------GATCTG---TTGGGACTGCTC-TTTGCCCT--TTATCACAAACTA------TATGCATTGTCTTGTAGAATGT---TTAGCCT-CATAGTGGGYGAAATTTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTAT-TCCGAGGAGCATGCCTGTTTGAGTGTCGTG-TAATTATCAA-CTCCC----TTTCTTTATTGAAGGG----------TGAGCTT-GGACTTGGGGA-T------TGCTGGTTTC-----ATTATCGGCTTCCCTTGAATGCATTAGCTGGAATT-----TGAT--------TCGCAGCATATATGCGGTGTGAT----AATG-TCGTCACTGTGT-AGCTCGGATTGT---C------------TAGCTT-CTAATAGTCC-TTCATT-GGACAA--TTTGATCATTTTGGCCTC-AAAT-CAGGTACGACT--ACCCGCTGAACTTAAGC?T?TCA-- Hyphodontia_sambuci_DQ340326 AAGGATCATTTGATGAGTTTG-AAACAGGACTTGATGCTGGCTTACTC---CAAAGCATGTGCTCAG-------------------TTCTAC---TCATTCCACTTAACACCTGTGCATT--TTCAAAGT--TGT----------AGT---CCTCCGTAATGGGAGTC----GTG-TCTTGTAATG-------AGA-TG---CTGGGACTACTC-TTTGCCCT--TTATCACAAACAT------TAT-CATTGTCTTGTAGAATGT-TAATAGCCT-----AAGGGCTTAATTTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACTCCTTGGTAT-TCCGAGGAGTATGCCTGTTTGAGTGTCTGA-CATTCATCAATCCTCC---TTTACT----TTTGTAAT-------GGTTGGCTT-GGATTTGGGGA-T------TGCTGGCCTTTCATTAGGTCTGGCTTCCCTTGAATGCATTAGTTGAATTG-----ACTT--------GCAACGC-TATGTGTGGTGTGAT----AATA-TCTTCACTGCAT-AGTTGTAAT-GAAGTT------------TGGCTT-ATAACCGTCT-TTCA-TTAGACAAT-T-TTGACCATTAGACCTC-AAAT-CAGGTAGGACT--ACCCGCTGAAC-------------- Hyphodontia_tropica_AF145587 -------------------------------TTGATGCTGGCATCTCTC--G-ATGCATGTGCTCAG-------------------CCCCGCTCTCAAATCCACTCAACACCTGTGCACT--TTCAAAGT--TGT----------AGT---CCTCCGTAATGGGAGTC----GCAAGTCTTTATT--------GGCTTG---TTGGGACTGCAC-TTTGCCAT--TTATCACAAACGA------ATTATATTGTTTTGTAGAATGT---CTAGCCT-CTTAGTAGGTGAAACTTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTAT-TCCGAGGAGCATGCCTGTTTGAGTGTCGTG-AAATTATCAA-CTCCC----ATTCTTTGTTGATTGG----------TGAGCTT-GGACTTGGGGA-C------TGCTGGTGCA-----A--ATCAGCTTCCCTTGAATGAATTAGCTGGAATT-----TGAT--------TCGCAGCATATATGCGGTGTGAT----AATG-TCGTCACTGTGT-AGCTCGGATTGT---C------------TGGCTT-CTAATCGTCC-TTCACG-G-ACAA--CTTGATC-TTTTGACCTC-AAAT-CAGGTAGG------------------------------ Schizopora_flavipora_AF145585 -------------------------------TTGATGCTGGCATCTTTTT-G-ATGCATGTGCTCAG-------------------CCCCGCTCTCAAATCCACTCAACACCTGTGCACT--TTCAAAGT--TGT----------AGT---CCTCCGTAATGGGAGTC----GCAAGTCTTTTTT--------GACTTG---CTGGGACTGCGC-TTTGCCAT--TTATCACAAACGA------TATTCATTGTTTTGTAGAATGT---CTAGCCT-CATTGTAGGTGAAACTTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTAT-TCCGAGGAGCATGCCTGTTTGAGTGTCGTG-AAATTATCAA-CTCCT----ATTCTTTATTGAATGG----------TGAGCTT-GGATTTGGAGA-T------TGCTGGTGAA-----A--ATCGGCTTCTCTTGAATGAATTAGCTGGAATT-----TGAT--------TCGCAGCATATATGCGGTGTGAT----AATG-TCGTCACTGTGT-AGCTCGGATTGT---C------------TGGCTT-CTAATCGTCT-TTCATG-G-ACAA--TTTGATCATTTTGACCTC-AAAT-CAGGTAGG------------------------------ Schizopora_paradoxa_AF145571 -------------------------------TTGATGCTGGCGCCTTCATCG-GTGCATGTGCTCAG-------------------CCCCGCTCTCAAATCCACTCAACACCTGTGCACT--TTCAAAGT--TGT----------GGT---CCTCCGTAATTGGAGCC----GCAGGTCAGCAAT--------GGCTTG---CTGGGATTGCAC-TTTGCCCT--TTATCACAAACTA------TATGCATTGTCTTGTAGAATGTA--TCAGCCT-CTTAGTGGGCGAAACTTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTAT-TCCGAGGAGCATGCCTGTTTGAGTGTCGTG-AAATTATCAA-CTCCC----TTTCTTTGTTGAAAGG----------TGAGCTT-GGACTTGGGGACT------TGCTGGTTTT-----C-AATCAGCTTCCCTTGAATGCATTAGCTGGACTT-----TGAT--------TTGCAGCATATATGCGGTGTGAT----AATG-TCGTCACTGTGT-AGCTCAAGTCGT---T------------TGGCTT-CTAATCGTCCTTTCACGAGGACAT--TCTGATCAATTAGACCTC-AAAT-CAGGTAGG------------------------------ Hyphodontia_abieticola_DQ873601 TTATCGAGTTTTTGAAGTG--GGAATTTTGATGCTGGCCAGTCCTCGGACGG---GCATGTGCTCGG------------------TCCCCGCTC--AAATCCACTCAACCACTGTGCACTAATTCGAAGCTTTG----------CGGTCCTCCCCG--AAAGGGGAGCAGCTCCCCCCTTATC----------GGGGTCGAGCCGGGGCTT-GCGGGG----------CTTCGAGCCTTTATCATACAA--ACTACTTTATTGTCT-TGTA-GAAT-GTGAACTTA-TTGAAAAAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTAT-TCCGAGGAGCATGCCTGTTTGAGTGTCATGCTAATCATCAACCCCCTCG-TTCGCTTTTGCGGATG--------CGGGTGGCTT-GGAATTGGAGG--ATTCATTGTCGGCTCT-CTATCGAGTCGACTCCTCTTGAAGACATTAGTCGGAA-CTCGGTCGCT--------CCGTCGCGGTAC-GCGGTGTGAT----AACT-TATTCACC-CAT-CGGTAAACCCGCTTCAACGCGTCCGG-CTGGCTT-CTAACCCGCGCTTCAGT-CGCA-ACTCTTGACA-ATCTGACCTC-AAAT-CAGGTAGGACT--ACCCGCTGAACTTAA-GCATATC-- Hyphodontia_alutaria_EU118631 -------------------------TCCAGTTTGAAGTGGGCCTTTG-AGCT----------CTCGT-------ATGTGCTCG-GGCCCCGCTCC--AATCCACTCAACCCCTGTGCACT--TTCGGAGTTGC-----------------------------GGGTC--ACTGTTA-----------------A-CGCAGTCTCGTGGCTTCGTCTCTTA--------TCACAAACCA-TTTATTATATG---TCTTGTAGAACGT-GGAT-GCCT-GTAAAGGCG-GAAACTCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTGGACTTGTTTCAGGAGCATGCCTGTTTGAGTGTCATG-AAATCATCAACCACGTT-----GCTTTAGTG--CG--------CCG-TGGCTT-GGACTTGGGGATT------TGCGGGCG---TTCTAGCGTCGGCTTCCCTTGAATGCATTAGTCGGGC-----GCCCTT--------TGCTCGAGA------AGTGTGAT----AATT-A--TCATT-CAC-TGATCGACGAGGGACCTTGTCTC------GGCTT-CTAACC-GCAT--GCTTGCATGCATCTTTGACACATCTGACCTC-AAAT-CAGGTAGGACT--ACCCGCTGAACTTAAGCATATCA-- Hyphodontia_crustosa_KC460313 AAGGATCAATACATGAATTTGCAAGTGAGACTTGATGCTGGCAGTGTAAT-G-CTGCATGTGCTCGG-------------------TTTCCGT--CAAATCCACATTACACCTGTGCACT--TTCAAAGCTCTGT----------AGT---CCTCCGTAATGGGAGCC----GCGGCTGTT----A-------TGGCTG---CTGGGGCTACACCTTTGCCCATACAATTACAAACTC------TGTATTTTGTCTTGTAGAATGTCTAATGGCCT---TTGTTGGCTTAACATAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTAT-TCCGAGGAGCATGCCTGTTTGAGTGTCATT-AAATCATCAATTCTCA---ACTTCTGTAATGGTTGTT-------GT-TGAATT-GGACTTGGGGACT------TGCTGATTCTAATGTTGAACTGGCTTCCCTCAAATGCATTAGCTGAAGTC-----TTAC--------AAGCAGCATATATGCGGTGTGAT----AATA-TCTTCACTGCAT-TGCTCTCGTTGAA-TT------------CGGCTT-CTAATGGTCC-TTCAATTGGACAATACTATGACAATTTGACCTC-AAAT-CAGGTAGGACT--ACCCGCTGAACTTAAGCATATCA-- Hyphodontia_heterocystidiata_JX175045 AAGGATCATTATTGAGTTTTG--AAGTGGGCTTGATGCTGGTACTGTAACAG-GTGCATGTGCTCGG-------------------CCCCGCTCTCAAATCCACTCAACACCTGTGCACT--TTCAAAGT--TGT----------AGTTCCCCTTCGTCGAAGGAGCGAGA-GTAGGCCAGCAAT--------GGCTTGCTTTTGGAGCTACGC-TTTGCCAT--T-ATCACAAACCA------TTAGCTCTGTTTTGTAGAATGT--CATAGCCTTCTCTGAAGGTGAAATGTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTAT-TCCGAGGAGCATGCCTGTTTGAGTGTCGTG-AAATTATCAACTCCCCC--TTTTCTTTGTTGAAGAGG-------AGTGAGCTT-GGACTTGGAGA-T------TGCTGGTGTT-----C--GTCAGCTTCTCTTGAATGCATTAGCTGGACTTA----TGAT--------TTGCAGCATATATGCGGTGTGAT----AATG-TCGTCACTGCGT-CGCTCGAGTCGAA-TC------------TGGCTT-CTAATCGTCT---CATTGAGACAAC-TCTGATCAATCTGACCTC-AAAT-CAGGTAGGACT--ACCCGCTGAACTTAAGCATATCA-- Hyphodontia_juniperi_JX175047 AAGGATCATTTAATGAATTTG-AAGTGAGGCTTGATGCTGGCGGCCTAAC-GGCTGCATGTGCTCGG-------------------TCTCCG---CAAATCCACTTTACACCTGTGCACT--TTCAA-GCTCTGT----------AGT---CCTCCGTAATGGGAGCC----GTGGTCAT-------------TGACTG---TTGGGACTACACCTTTGCCCATATA-TTACAAACTC------TGTATAATGTCTTGTAGAATGTCTATTGGCCT---TCATTGGCTTAACATAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTAT-TCCGAGGAGCATGCCTGTTTGAGTGTCATT-TAATCATCAATCTGCA---ACTTCT-TCATGTTGTTT-------GC-TGGATT-GGACTTGGGGATT------TGCTGGTTC------TGAATCGGCTTCCCTCAAATGCATTAGCTGGAGCG-----ATGC--------AAGCAGCATATATGCGGTGTGAT----AATA-TCTTCACTGCGT-TGCTCTTGTTGAA-TC------------TGGCTT-CTAACCGTCC-TTCAGTTGGACAATGCTTTGACAATCTGACCTC-AAAT-CAGGTAGGACT--ACCCGCTGAACTTAAGCATATCA-- Hyphodontia_nothofagi_GQ411524 AAGGATCATTACTGAGTTTTG--AAGTGGGCTTGATGCTGGTAT-TTAAC-G-ATGCATGTGCTCAG-------------------CCCCGCTCTCAAATCCACTCAACACCTGTGCACT--TTCAAAGT--TGT----------AGT---CCTCCGTAATGGGAGTC----GCAAGTCATTAT---------GATTTG---TTGGGACTGCAC-TTTGCCAT--TTATCACAAACTA------TATGCATTGTCTTGTAGAATGA---ATAGCCT-CATAGTGGGCGAAAATTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTAT-TCCGAGGAGCATGCCTGTTTGAGCGTCGTG-AAATTATCAA-CTCCT----TTTCTTTATTGAAAGG----------TGAGCTT-GGACTTGGGGA-T------TGCTGGTGCA-----A--ATCAGCTTCTCTTGAATGCATTAGCTGGAATT-----TGAT--------TCGTAGCATATATGCGGTGTGAT----AATG-TCGTCACTGTGT-AGCTTGAATTGT---C------------TAGCTT-CTAATCGTCC-TTCACG-GGACAA--TTTGATCTTTTTGACCTC-AAAT-CAGGTAGGACT--ACCCGCTGAACTTAAGCATATCA-- Hyphodontia_pallidula_KJ140566 ------------AAGGATC--ATTATCGAGTTTGAAGTGGGCCTTTG-AGCT----------CTCGT-------ACGTGCTCG-GGCCCCGCTCC--AATCCACTCAACCCCTGTGCACT--TTCGGAGTTGC-----------------------------GGGTC--ACTGTTA-----------------A-CGCAGTCTCGTGGCTTCGTCTCTTA--------TCACAAACCA-TATATTACATG---TCTTGTAGAACGT-GGAT-GCCT-GTAAAGGCG-GAAACTCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTGGACTTGTTTCAGGAGCATGCCTGTTTGAGTGTCATG-AAATCATCAACCACGTT-----GCTTTAGTG--CG--------CCG-TGGCTT-GGACTTGGGGATT------TGCGGGCGCG-TTCTAGCGTCGGCTTCCCTTGAATGCATTAGTCGGGT-----GCCCTT--------TGCTCGAGA------AGTGTGAT----AATT-A--TCATT-CAC-TGATCGACGAGGGACCTTGTCTC------GGCTT-CTAACC-GCAT--GCTTGCATGCATCTTTGACACATCTGACCTC-AAAT-CAGGTAGGACT--A------------------------ Hyphodontia_rimosissima_KJ140600 AAGGATCATTATTGAATTTTG--AAGTGGGCTTGATGCTGGCGTCTTCACCG-ATGCATGTGCTCAG-------------------TCCCGCTCTCAAATCCATTCAACACCTGTGCACT--TTCAAAGT--TGT----------GGT---CCTCCGTAATGGGAGCT----GCAGGTCTTTATT--------GATCTG---TTGGGACTGCAC-TTTGCCCT--TTATCACAAACTA------TATGCATTGTCTTGTAGAATGT---TCAGCCT-CATAGTGGGCGAAACTTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTAT-TCCGAGGAGCATGCCTGTTTGAGTGTCGTG-TAATTATCAA-CTCCC----TTTCTTTATTGAAGGG----------TGAGCTT-GGACTTGGGGA-T------TGCTGGTTTC-----ATTATCGGCTTCCCTTGAATGCATTAGCTGGAATT-----TGAT--------TCGCAGCATATATGCGGTGTGAT----AATG-TCGTCACTGTGT-AGCTCGGATTGT---C------------TAGCTT-CTAATAGTCC-TTCATT-GGACAA--TTTGATCATTTT-------------------------------------------------- Hyphodontia_tropica_KC414243 AAGGATCATTACTGAGTTTTG--AAGTGGGCTTGATGCTGGCATCTCTC--G-ATGCATGTGCTCAG-------------------CCCCGCTCTCAAATCCACTCAACACCTGTGCACT--TTCAAAGT--TGT----------AGT---CCTCCGTAATGGGAGTC----GCAAGTCTTTATT--------GGCTTG---TTGGGACTGCAC-TTTGCCAT--TTATCACAAACGA------TTTATATTGTTTTGTAGAATGT---CTAGCCT-CTTAGTAGGTGAAACTTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTAT-TCCGAGGAGCATGCCTGTTTGAGTGTCGTG-AAATTATCAA-CTCCC----ATTCTTTGTTGATTGG----------TGAGCTT-GGACTTGGGGA-C------TGCTGGTGCA-----A--ATCAGCTTCCCTTGAATGAATTAGCTGGAATT-----TGAT--------TCGCAGCATATATGCGGTGTGAT----AATG-TCGTCACTGTGT-AGCTCGGATTGT---C------------TGGCTT-CTAATCGTCC-TTCACG-G-ACAA--CTTGATC-TTTTGACCTCCAAATGCAGTTAGGGGT--ACCGAGT------------------ Hyphodontia_aspera_DQ873606 AAGGATCATTATTGAGTTTTG--AAGTGGGCTTGATGCTGGCGTCTTCACCG-ATGCATGTGCTCAG-------------------CCCCGCTCTCAAATCCACTCAACACCTGTGCACT--TTCAAAGT--TGT----------AGT---CCTCCGTCATGGGAGTC----GTAGGTCATTTAT--------GATCTG---CTGGGATTGCGC-TTTGCCCT--TTATCACAAACTA------TATGCATTGTTTTGTAGAATGA---AAAGCCT-CATAGTGGGCGAAACTAAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTAT-TCCGAGGAGCATGCCTGTTTGAGTGTCGTG-AAATTATCAA-CTCCC----TTTCTTTATTGAAGGG----------TGAGCTT-GGACTTGGGGA-T------TGCTGGTTTT------CAATCGGCTTCCCTTGAATGCATTAGCTGGAATT-----TAAT--------TCGCAGCATATATGCGGTGTGAT----AATG-TCGTCACTGTGT-AGCTCGGATTGT---C------------TAGCTT-CTAATCGTCC-TTCACG-GGACAA--TTTGATCAATTTGGCCTC-AAAT-CAGGTAGGACT--ACCCGCTGAACTTAAGCATATCA-- Hyphodontia_cineracea_DQ340336 -AAGGATCATTATTGAATT--GCATGAGGTTTTGATGCTGGCTTCGAAAGGA---GCATGTGCTCGG------------------CCTT--------AATCCAATCAACCACTGTGCACTTATTTCGTGAAGATG---------TGGTCTCCCCGTTTGCGCGGGAGCAGCTGCTC----------------AAGAGGGCGGCCGGGGTTATGTCTTC-----------ATCGAACT-------TACAA--ACAACTGTATTGTCT-TGT--GAAT-GTAAAAAAA-GTTAATAAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTAT-TCCGAGGAGCATGCCTGTTTGAGTGTCATG-AAATCATCAACCTTCTC----AGCTTTTGCGG------------AGTAGGATT-GGATTTGGGAGT------CTGCTGGCTAG-CA--ATGGTCAGCTCTCCTTGAATGCATTAGCTGGAT-----GTTA-T--------CTGT-GCGATCC-GCGGTGTGAT----AAGT-ATTTCACC-CTT-GAGTCAATCGGAATTG--GCGTC-----TGGCTT-CTAA-TAGTCTTCGGAC------AATCTTGACA-ATTTGACCTC-AAAT-CAGGTAGGACT--ACCCGCTGAAC-------------- Hyphodontia_hastata_DQ340311 -AAGGATCATTATCGAGTTTTGAAGTGGGCTTCGATGCTGGCCTCTC--GGG---GCATGTGCTCGG-------------------CCCCGCTC----ATCCACTCAACCCCTGTGCACT--TTCGAAGTCGT------------GGTCCTCCGTC----GCGGGAGCCGCCTCGTCATCTCTTT-----GACGGGGCCGGGGCCGCGCTTCGCCTTTCA--------TCACAAACTC---TTTTAAATG---TCTTGTAGAATGT-GAAATGCCT-CTTTGTGGGCGAAACTTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTAT-TCCGAGGAGCATGCCTGTTTGAGTGTCATG-AAATCATCAACCCCCCTCTCTCTGTCTCTTCGGAGACTTCGGAGGGGTGGCTT-GGACTTGGGGATC------TGCTGGCCC--TTCGGGATTCGGCTTCCCTTGAATGCATTAGCCAGAC-----TTCGGT--------TCGCAGCGGCTCAGCGGTGTGAT----AATA-TCTTCACT--GC-GGCCGGCTCGGCAGTGTCAAGTTC-----GGCTT-CTAATCGTCCGTCTCGGACACACCTTCATTGACAATCTGACCTC-AAAT-CAGGTAGGACT--ACCCGCTGAAC-------------- Lagarobasidium_calongei_NR119737 -------------------------------TTGTAGCTGGTCTTTTCGGAG---ACATGTGCACAC--------------------CCTGCTC---AATCCACAT-ACACCTGTGCACCT-CTGGTAGCTTCGA--------------------------CGAAAG-----------------------------------TCGTCGCTATGTTTTT----------TTACATACTC-----------CCAATGTATCAGAATGC-------TTTGTTGCTATAACGCAATTTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCCTTGGTAT-TCCGAGGAGCATGCCTGTTTGAGTGTCATGAATATC-TCAACCCTCCGG----GTCTTTGTGATCCGA------TGTAAGGGCTTGGACTTGGGAGCC------TGCAGGCACT-TTGCTGAGCCTGCTCTCCTTAAATGTATTAGCTGGACTACTCTGTGCTATCCGGTGTGATAATATCTACGCCGCATGGTTTACAATGAGTGTTACCCCGTTCATTCGGTGTGTAACCTCAATAGAGTATCTGCTT-CTAATCGTCTTGTTATCGTCGCGACATCTCCACCGGGAGGCCGGCATAA-GACAAAATACCTTGACATCTGACCTCAAATCAGGTA-- Lagarobasidium_detriticum_FM876211 -------CATTAATGAATTTAATTGACAGGGTTGTCGCTGGCCTTTACAG-----GCATGTGCACGC------------------CTTGCTCATATTCATCCATTCTATACCTCTGTGCACTTTTCATAGGTTGG----------------CTTAGTTTAAAAGGATC----GTCT-------------------TGTACGATCTGGGCCTCTC-TATGC-------ATTTTATACAA-----ACATCTA---TGTCTTAGAATGT-------CTTTATTGCGTAACGCATATAAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTAT-TCCGAGGAGCATGCCTGTTTGAGTGTCATG-TTATTCTCAGCTCCTCTCAGATTTTTCTGTTGTTGG------------AGACT-GGACTTGGAAG-------CTGCTGGAACG---TCAGGTTCAGCTCTTCTTAAATGCATTAGTGTGAA-------TATT--------TGTTGAATGTTCTCCAGTGTGAT----AATTGTCTACGCTGTTTGAACTTTGGCAGAAATTATATATTCA----TGCTT-CAAACCGTCT------TCGGACAACTTTTTGC--ATTTGACCTC-AAAT-CAGGTAGGACT--ACCCGCTGAACTTAAGCATATCA-- ; END; BEGIN TREES; Title MrBayes; LINK Taxa = Taxa; TRANSLATE 1 Hyphodontia_borbonica_L93_KR349240, 2 Hyphodontia_arguta_KR349242, 3 Hyphodontia_arguta_KR349243, 4 Hyphodontia_borbonica_L693_KR349241, 5 Hyphodontia_vietnamensis_JX175044, 6 Hyphodontia_abieticola_DQ340331, 7 Hyphodontia_astrocystidiata_JN129972, 8 Hyphodontia_barbajovis_DQ873609, 9 Hyphodontia_erastii_JX857800, 10 Hyphodontia_floccosa_DQ873618, 11 Hyphodontia_heterocystidiata_JX175046, 12 Hyphodontia_microfasciculata_JN129976, 13 Hyphodontia_niemelaei_EU583422, 14 Hyphodontia_nothofagi_AF145583, 15 Hyphodontia_pallidula_DQ340317, 16 Hyphodontia_radula_AF145581, 17 Hyphodontia_radula_AF145580, 18 Hyphodontia_rimosissima_DQ873627, 19 Hyphodontia_sambuci_DQ340326, 20 Hyphodontia_tropica_AF145587, 21 Schizopora_flavipora_AF145585, 22 Schizopora_paradoxa_AF145571, 23 Hyphodontia_abieticola_DQ873601, 24 Hyphodontia_alutaria_EU118631, 25 Hyphodontia_crustosa_KC460313, 26 Hyphodontia_heterocystidiata_JX175045, 27 Hyphodontia_juniperi_JX175047, 28 Hyphodontia_nothofagi_GQ411524, 29 Hyphodontia_pallidula_KJ140566, 30 Hyphodontia_rimosissima_KJ140600, 31 Hyphodontia_tropica_KC414243, 32 Hyphodontia_aspera_DQ873606, 33 Hyphodontia_cineracea_DQ340336, 34 Hyphodontia_hastata_DQ340311, 35 Lagarobasidium_calongei_NR119737, 36 Lagarobasidium_detriticum_FM876211; TREE tree1 = ((((((((13:0.060975,(14:0.0012010000000000076,28:0.0011740000000000084)1:0.021179999999999977,((20:0.0028839999999999977,31:0.0032360000000000166)1:0.025963999999999987,21:0.021498000000000017)1:0.020557999999999965)0.71:0.010171000000000041,(16:0.004085000000000005,17:0.0034840000000000426)1:0.015337999999999963)0.98:0.014043999999999945,(18:0.0043760000000000465,30:0.0064469999999999805)1:0.02127800000000002)0.7:0.009939999999999949,32:0.02141700000000002)0.6:0.009398000000000017,((7:0.017179000000000055,22:0.012090000000000045)0.84:0.009453000000000045,(11:0.02319899999999997,26:0.009160999999999975)1:0.08381000000000005)0.99:0.02701500000000001)1:0.078598,(((25:0.051359000000000044,27:0.03674500000000003)0.98:0.017642999999999964,5:0.05126900000000001)1:0.06604600000000005,(19:0.057975,(9:0.041656000000000026,12:0.06642000000000003)0.98:0.019440000000000013)1:0.07097200000000004)1:0.037478999999999985)1:0.069129,(34:0.09979300000000002,(((1:0.0025760000000000227,4:0.001802999999999999)1:0.13288600000000006,((2:0.0027429999999999954,3:0.0024120000000000252)1:0.054584999999999995,((15:0.0010860000000000314,24:0.0045000000000000595)0.68:0.002359,29:0.005241000000000051)1:0.022027999999999937):0.07481899999999997)1:0.10501699999999992,((10:0.06626500000000002,((6:0.012117999999999962,23:0.010395000000000043)1:0.058418000000000025,8:0.14071300000000003)0.58:0.01638299999999998)1:0.118703,33:0.13310699999999998)1:0.10689800000000005)0.85:0.04191)0.86:0.06139800000000001)1:0.047661,(35:0.27283799999999997,36:0.21353899999999998)1:0.047661000000000016); END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 765; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 765; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 765; END; BEGIN TREES; Title Maximum_Parsimony; LINK Taxa = Taxa; TRANSLATE 1 Hyphodontia_borbonica_L93_KR349240, 2 Hyphodontia_arguta_KR349242, 3 Hyphodontia_arguta_KR349243, 4 Hyphodontia_borbonica_L693_KR349241, 5 Hyphodontia_vietnamensis_JX175044, 6 Hyphodontia_abieticola_DQ340331, 7 Hyphodontia_astrocystidiata_JN129972, 8 Hyphodontia_barbajovis_DQ873609, 9 Hyphodontia_erastii_JX857800, 10 Hyphodontia_floccosa_DQ873618, 11 Hyphodontia_heterocystidiata_JX175046, 12 Hyphodontia_microfasciculata_JN129976, 13 Hyphodontia_niemelaei_EU583422, 14 Hyphodontia_nothofagi_AF145583, 15 Hyphodontia_pallidula_DQ340317, 16 Hyphodontia_radula_AF145581, 17 Hyphodontia_radula_AF145580, 18 Hyphodontia_rimosissima_DQ873627, 19 Hyphodontia_sambuci_DQ340326, 20 Hyphodontia_tropica_AF145587, 21 Schizopora_flavipora_AF145585, 22 Schizopora_paradoxa_AF145571, 23 Hyphodontia_abieticola_DQ873601, 24 Hyphodontia_alutaria_EU118631, 25 Hyphodontia_crustosa_KC460313, 26 Hyphodontia_heterocystidiata_JX175045, 27 Hyphodontia_juniperi_JX175047, 28 Hyphodontia_nothofagi_GQ411524, 29 Hyphodontia_pallidula_KJ140566, 30 Hyphodontia_rimosissima_KJ140600, 31 Hyphodontia_tropica_KC414243, 32 Hyphodontia_aspera_DQ873606, 33 Hyphodontia_cineracea_DQ340336, 34 Hyphodontia_hastata_DQ340311, 35 Lagarobasidium_calongei_NR119737, 36 Lagarobasidium_detriticum_FM876211; TREE tree1 = (((((((((((14,28)99.0:99.0,(16,17)54.0:54.0),(20,31)83.0:83.0),(22,(7,(32,(13,21))))),(18,30)85.0:85.0)69.0:69.0,(11,26)99.0:99.0),(((25,27)73.0:73.0,5)86.0:86.0,(12,(9,19)53.0:53.0)90.0:90.0)54.0:54.0)87.0:87.0,34),((1,4)100.0:100.0,((2,3)100.0:100.0,(24,(15,29))61.0:61.0)94.0:94.0)100.0:100.0)87.0:87.0,(33,((6,23)99.0:99.0,(8,10)57.0:57.0)89.0:89.0)98.0:98.0)79.0:79.0,(35,36)79.0:79.0); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1431001686398; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1600915240893670063; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 458708306659713303; mqVersion 275; checksumv 0 3 4006899534 null getNumChars 765 numChars 765 getNumTaxa 36 numTaxa 36 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 526269.0 sumSquares -3.2281802128991617E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1920 962; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #458708306659713303 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 247; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -67; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;