#NEXUS [written Tue Jun 09 11:43:21 BRT 2015 by Mesquite version 3.01 (build 658) at Master-PC/192.168.0.107] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=31; TAXLABELS Puccinia_hordei_DQ354527_ Puccinia_coronata_DQ354526_ Puccinia_coronata_EU851141_ Puccinia_graminis_HQ412648_ Puccinia_graminis_AF522177_ Puccinia_peperomiae_EU851146 'Uromyces ari-triphylli DQ354529 ' Uromyces_hawksworthii_KR821139 Uromyces_hawksworthii_KR821140 Uromyces_acuminatus_GU109282 Puccinia_heucherae_DQ359702_ Puccinia_heucherae_DQ359701_ Puccinia_melanocephala_KP201838_ Puccinia_melanocephala_KP201839_ Puccinia_nakanishikii_GU058002_ _Cumminsiella_mirabiliss_DQ354531 Cumminsiella_mirabiliss_AF426206_ Uromyces_ixiae_DQ917738_ Uromyces_ixiae_DQ917739_ Uromyces_appendiculatus_KM249870_ Uromyces_appendiculatus_AY745704_ Uromyces_trifolii_GU936634_ 'Uromyces viciae-fabae KJ716343 ' 'Uromyces viciae-fabae AF426199 ' Puccinia_hemerocallidis_DQ354519_ Puccinia_hemerocallidis_GU058020_ Uromyces_striatus_HQ412652_ Uromyces_striatus_HQ317512_ Uromyces_pisi_AF426201_ Uromyces_vignae_AB115649_ 'Melampsora larici-populina JQ042250' ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=1037; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX Puccinia_hordei_DQ354527_ AGTAACGGCGAGTGAAGAGGGAAAAGCCCAAATTTGTAATCTGGCTCTTT---CA-GAGTCCGAGTTGTAATTTTGAGAA Puccinia_coronata_DQ354526_ AGTAACGGCGAGTGAAGAGGGAAAAGCCCAAATTTGTAATCTGGCTCTTT---CA-GAGTCCGAGTTGTAATTTTGAGAA Puccinia_coronata_EU851141_ ?GTAACGGCGAGTGAAGAGGGAAAAGCCCAAATTTGTAATCTGGCTCTTT---CA-GAGTCCGAGTTGTAATTTTGAGAA Puccinia_graminis_HQ412648_ AGTAACGGCGAGTGAAGAGGGAAAAGCCCAAATTTGTAATCTGGCTCTTT---CA-GAGTCCGAGTTGTAATTTTAAGAA Puccinia_graminis_AF522177_ AGTAACGGCGAGTGAAGAGG?AAAAGCCCAAATTTGTAATCTGGCTCTTT---CA-GAGTCCGAGTTGTAATTTTAAGAA Puccinia_peperomiae_EU851146 AGTAATGGCGAATGAACAGGGAAAAGCCCAAATTTGTAATCTGGCTTTTT---CAGGAGTCAGAGTTGTAATTTTGAGAA 'Uromyces ari-triphylli DQ354529 ' AGTAACGGCGAGTGAAGAGGGAAAAGCCCAAATTTGTAATCTGGCTCTTT---CA-GAGTCAGAGTTGTAATTTTGAGAA Uromyces_hawksworthii_KR821139 AGTAACGGCGAGTGAAGAGGGAAAAGCCCAAATTTGTAATCTGGCTCTTT---CA-GAGTGAGAGTTGTAATTTTGAGAA Uromyces_hawksworthii_KR821140 AGTAACGGCGAGTGAAGAGGGAAAAGCCCAAATTTGTAATCTGGCTCTTT---CA-GAGTGAGAGTTGTAATTTTGAGAA Uromyces_acuminatus_GU109282 AGTAACGGCGAGTGAAGAGGGAAAAGCCCAAATTTGTAATCTGGCTCTTT---CA-GGGTCCGAGTTGTAATTTTGAGAA Puccinia_heucherae_DQ359702_ AGTAACGGCGAGTGAAGAGGGAAAAGCCCAAATTTGTAATCTGGCTCTTT---CA-GAGTCTGAGTTGTAATTTTGAGAA Puccinia_heucherae_DQ359701_ AGTAACGGCGAGTGAAGAGGGAAAAGCCCAAATTTGTAATCTGGCTCTTT---CA-GAGTCTGAGTTGTAATTTTGAGAA Puccinia_melanocephala_KP201838_ AGTAACGGCGAGTGAAGAGGGAAAAGCCCAAATTTGTAATCTGGCTCTTT---CA-GAGTCCGAGTTGTAATTTTGAGAA Puccinia_melanocephala_KP201839_ AGTAACGGCGAGTGAAGAGGGAAAAGCCCAAATTTGTAATCTGGCTCTTT---CA-GAGTCCGAGTTGTAATTTTGAGAA Puccinia_nakanishikii_GU058002_ AGTAACGGCGAGTGAAGAGGGACAAGCCCAAATTTGTAATCTGGCTCTTT---TA-GAGTCTGAGTTGTAATTTTGAGAG _Cumminsiella_mirabiliss_DQ354531 AGTAACGGCGAGTGAAGAGGGAAAAGCCCAAATTTGTAATCTGGCTCTTT---CA-GAGTCCGAGTTGTAATTTTGAGAA Cumminsiella_mirabiliss_AF426206_ ????ACGGCGAGTGAAGAGGGAAAAGCCCAAATTTGTAATCTGGCTCTTT---CA-GAGTCCGAGTTGTAATTTTGAGAA Uromyces_ixiae_DQ917738_ AGTAACGGCGAGTGAAGAGGGAAAAGCCCAAATTTGTAATCTGGCTCTTT---CA-GGGTCCGAGTTGTAATTTTGAGAA Uromyces_ixiae_DQ917739_ AGTAACGGCGAGTGAAGAGGGAAAAGCCCAAATTTGTAATCTGGCTCTTT---CA-GGGTCYGAGTTGTAATTTTGAGAA Uromyces_appendiculatus_KM249870_ AGTAATGGCGAATGAAGAGGGAAAAGCCCAAATTTGTAATCTGGCTCTTT---CA-GAGTCCGAATTGTAATTTTAAGAA Uromyces_appendiculatus_AY745704_ ??????????????????GGGAAAAGCCCAAATTTGTAATCTGGCTCTTT---CA-GAGTCCGAATTGTAATTTTAAGAA Uromyces_trifolii_GU936634_ ???????????ATGAAGAGGGAAAAGCCCAAATTTGTAATCTGGCTCTTT---CA-GAGTCCGAGTTGTAATTTTGAGAA 'Uromyces viciae-fabae KJ716343 ' AGTAATGGCGAATGAAGAGGGAAAAGCCCAAATTTGTAATCTGGCTCTTT---CA-GAGTCCGAGTTGTAATTTTGAGAA 'Uromyces viciae-fabae AF426199 ' ???AATGGCGAATGAAGAGGGAAAAGCCCAAATTTGTAATCTGGCTCTTT---CA-GAGTCCGAGTTGTAATTTTGAGAA Puccinia_hemerocallidis_DQ354519_ AGTAATGGCGAATGAAGAGGGAAAAGCCCAAATTTGTAATCTGGCTCTTT---CA-GAGTCCGAGTTGTAATTTTGAGAA Puccinia_hemerocallidis_GU058020_ AGTAATGGCGAATGAAGAGGGAAAAGCCCAAATTTGTAATCTGGCTCTTT---CA-GAGTCCGAGTTGTAATTTTGAGAA Uromyces_striatus_HQ412652_ AGTAATGGCGAATGAAGAGGGAAAAGCCCAAATTTGTAATCTGGCTCTTT---MA-GAGTCCGAGTTGTAATTTTGAGAA Uromyces_striatus_HQ317512_ AGTAATGGCGAATGAAGAGGGAAAAGCCCAAATTTGTAATCTGGCTCTTT---CA-GAGTCCGAGTTGTAATTTTGAGAA Uromyces_pisi_AF426201_ ???AATGGCGAATGAAGAGGGAAAAGCCCAAATTTGTAATCTGACTCTTT---CA-GAGTCCGAGTTGTAATTTTGAGAA Uromyces_vignae_AB115649_ AGTAATGGCGAATGAAGAGGGAAAAGCCCAAATTTGTAATCTGGCTCTTT---CA-GAGTCCGAATTGTAATTCTGAGAA 'Melampsora larici-populina JQ042250' AGTAACGGCGAGTGAACAGGGAAAAGCCCAAATTTGTAATCTGGCACTTTTTACAAGTGTCCGAGTTGTAATTTGTAGAA Puccinia_hordei_DQ354527_ CTG-TTTTCAGTGCTGGACCATGTATAAGTCT-GTTGAAAAGCAGCATCATTGAGGGTGATAATCCCGTTCATGATATGG Puccinia_coronata_DQ354526_ CTG-TTTTCAGTGCTGGACCATATATAAGTCT-GTTGAAAAGCAGCATCATTGAGGGTGATAATCCCGTTTATGATATGG Puccinia_coronata_EU851141_ CTGCTTTTCAGTGCTGGACCATATATAAGTCT-GTTGAAAAGCAGCATCATTGAGGGTGATAATCCCGTTTATGATATGG Puccinia_graminis_HQ412648_ CTG-TTTTCAGTGCTGGACCATGTATAAGTCT-GTTGAAAAGCAGCATCATTGAGGGTGATAATCCCGTTTATGATATGG Puccinia_graminis_AF522177_ CTG-TTTTCAGTGCTGGACCATGTATAAGTCTCGTTGAAAAGCAGCATCATTGAGGGTGATAATCCCGTTTATGATATGG Puccinia_peperomiae_EU851146 CTGTTTTTCAGTGCTGGACCATATATAAGTCT-GTTGAAAAGCAGCATCATTGAAGGTGACAATCCTGTTTATGATATGG 'Uromyces ari-triphylli DQ354529 ' CTG-TTTTCAGTGCTGGACCATGTATAAGTCT-GTTGAAAAGCAGCATCATTGAAGGTGATAATCCTGTTTATGATATGG Uromyces_hawksworthii_KR821139 CTG-TTTTCAGTGCTGGACCATGTATAAGTCT-GTTGAAAAGCAGCATCATTGAGGGTGATAATCCCGTTTATGATATGG Uromyces_hawksworthii_KR821140 CTG-TTTTCAGTGCTGGACCATGTATAAGTCT-GTTGAAAAGCAGCATCATTGAGGGTGATAATCCCGTTTATGATATGG Uromyces_acuminatus_GU109282 CTG-TTTTCAGTGCTGGACCATGTATAAGTCT-GTTGAAAAGCAGCATCATTGAGGGTGATAATCCCGTTTATGATATGG Puccinia_heucherae_DQ359702_ CTG-TTTTCAGTGCTGGACCATGTATAAGTCT-GTTGAAAAGCAGCATCATTGAGGGTGATAATCCCGTTTATGATATGG Puccinia_heucherae_DQ359701_ CTG-TTTTCAGTGCTGGACCATGTATAAGTCT-GTTGAAAAGCAGCATCATTGAGGGTGATAATCCCGTTTATGATATGG Puccinia_melanocephala_KP201838_ CTG-TTTTCAGTGCTGGACCATATATAAGTCT-GTTGAAAAGCAGCATCATTGAGGGTGATAGTCCCGTTTATGATATGG Puccinia_melanocephala_KP201839_ CTG-TTTTCAGTGCTGGACCATATATAAGTCT-GTTGAAAAGCAGCATCATTGAGGGTGATAGTCCCGTTTATGATATGG Puccinia_nakanishikii_GU058002_ CTG-TTTTCAGTGCTGGACCATATATAAGTCT-GTTGAAAAGCAGCATCATTGAGGGTGATAATCCCGTTTATGATATGG _Cumminsiella_mirabiliss_DQ354531 CTG-TTTTCAGTGCTGGACCATGTACAAGTCT-GTTGAAAAGCAGCATCATTGAGGGTGATAATCCCGTTCATGATATGG Cumminsiella_mirabiliss_AF426206_ CTG-TTTTCAGTGCTGGACCATGTACAAGTCT-GTTGAAAAGCAGCATCATTGAGGGTGATAATCCCGTTCATGATATGG Uromyces_ixiae_DQ917738_ CTG-TTTTCAGTGCTGGACCATATACAAGTCT-GTTGAAAAGCAGCATCATTGAGGGTGATAATCCCGTTCATGATATGG Uromyces_ixiae_DQ917739_ CTG-TTTTCAGTGCTGGACCATATACAAGTCT-GTTGAAAAGCAGCATCATTGAGGGTGATAATCCCGTTCATGATATGG Uromyces_appendiculatus_KM249870_ CTG-TTTTCAGTGCTGGACCATATATAAGTCT-GTTGAAAAGCAGCATCATAGAAGGTGATAATCCTGTTAATGATATGG Uromyces_appendiculatus_AY745704_ CTG-TTTTCAGTGCTGGACCATATATAAGTCT-GTTGAAAAGCAGCATCATAGAAGGTGATAATCCTGTTAATGATATGG Uromyces_trifolii_GU936634_ CTG-TTTTCAGTGCTGGACCATGTATAAGTCT-GTTGAAAAGCAGCATCATAGAAGGTGATAATCCTGTTCATGATATGG 'Uromyces viciae-fabae KJ716343 ' CTG-TTTTCAGTGCTGGACCATGTACAAGTCT-GTTGAAAAGCAGCATCATAGAAGGTGATAATCCTGTTCATGATATGG 'Uromyces viciae-fabae AF426199 ' CTG-TTTTCAGTGCTGGACCATGTACAAGTCT-GTTGAAAAGCAGCATCATAGAAGGTGATAATCCTGTTCATGATATGG Puccinia_hemerocallidis_DQ354519_ CTG-TTTTCAGTGCTGGACCATATATAAGTCT-GTTGAAAAGCAGCATCATAGAAGGTGATAATCCTGTTCATGATATGG Puccinia_hemerocallidis_GU058020_ CTG-TTTTCAGTGCTGGACCATATATAAGTCT-GTTGAAAAGCAGCATCATAGAAGGTGATAATCCTGTTCATGATATGG Uromyces_striatus_HQ412652_ CTG-TTTTCAGTGCTGGACCATGTATAAGTCT-GTTGAAAAGCAGCATCATAGAAGGTGATAATCCTGTTCATGATATGG Uromyces_striatus_HQ317512_ CTG-TTTTCAGTGCTGGACCATGTATAAGTCT-GTTGAAAAGCAGCATCATAGAAGGTGATAATCCTGTTCATGATATGG Uromyces_pisi_AF426201_ CTG-TTTTCAGTGCTGGACCATGTATAAGTCT-GTTGAAAAGCAGCATCATAGAAGGTGATAATCCTGTTCATGATATGG Uromyces_vignae_AB115649_ CTG-TTTTCAGTGCTGGACCATATATAAGTCT-GTTGAAAAGCAGCATCATAGAAGGTGATAATCCTGTTCATGATATGG 'Melampsora larici-populina JQ042250' CTG-TTATCCGCGCTGGACCA-GTACAAGTCT-GTTGAAAAGCAGCATCATTGAAGGTGAAAATCCTGTAGATGATATGG Puccinia_hordei_DQ354527_ ACTACCAGTGCA-TTATGATACAGTCTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATC Puccinia_coronata_DQ354526_ ACTCCCAGTGCA-ATATGATACAGTCTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATC Puccinia_coronata_EU851141_ ACTCCCAGTGCA-ATATGATACAGTCTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATC Puccinia_graminis_HQ412648_ ACTACCAGTGCA-TTATGATACAGTCTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATC Puccinia_graminis_AF522177_ ACTACCAGTGCA-TTATGATACAGTCTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATC Puccinia_peperomiae_EU851146 GCTACCAGTGCA-TTATGATACAGTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATC 'Uromyces ari-triphylli DQ354529 ' ACTACCAGTGCA-TTATGATACAGTCTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATC Uromyces_hawksworthii_KR821139 ACTACCAGTGCA-TTATGATACAGTCTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATC Uromyces_hawksworthii_KR821140 ACTACCAGTGCA-TTATGATACAGTCTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATC Uromyces_acuminatus_GU109282 ACTACCAGTGCA-TTATGATACAGTCTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATC Puccinia_heucherae_DQ359702_ ACTACCAGTGCA-ATATGATACAGTCTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATC Puccinia_heucherae_DQ359701_ ACTACCAGTGCA-ATATGATACAGTCTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATC Puccinia_melanocephala_KP201838_ ACTCCCAGTGCA-ATATGTTACAGTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATC Puccinia_melanocephala_KP201839_ ACTCCCAGTGCA-ATATGTTACAGTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATC Puccinia_nakanishikii_GU058002_ ACTACCAGTGCA-CTATGATACAGTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATC _Cumminsiella_mirabiliss_DQ354531 ACTACCAGTGCA-ATATGATACAGTYTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATC Cumminsiella_mirabiliss_AF426206_ ACTACCAGTGCA-ATATGATACAGTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATC Uromyces_ixiae_DQ917738_ ACTACCAGTGCA-TTATGATACAGTCTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATC Uromyces_ixiae_DQ917739_ ACTACCAGTGCA-TTATGATACAGTCTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATC Uromyces_appendiculatus_KM249870_ ACTACCAGTGCA-ATATGATACAGTCTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGAGGGTGGTAAATTCCATC Uromyces_appendiculatus_AY745704_ ACTACCAGTGCA-ATATGATACAGTCTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGAGGGTGGTAAATTCCATC Uromyces_trifolii_GU936634_ ACTACCAGTGCA-ATATGATACAGTCTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATC 'Uromyces viciae-fabae KJ716343 ' ACTACCAGTGCA-ATATGATACAGTCTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATC 'Uromyces viciae-fabae AF426199 ' ACTACCAGTGCA-ATATGATACAGTCTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATC Puccinia_hemerocallidis_DQ354519_ ACTACCAGTGCA-ATATGATACAGTCTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATC Puccinia_hemerocallidis_GU058020_ ACTACCAGTGCA-ATATGATACAGTCTCTAAGAGTCRAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATC Uromyces_striatus_HQ412652_ ACTACCAGTGCA-ATATGATACAGTCTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATC Uromyces_striatus_HQ317512_ ACTACCAGTGCA-ATATGATACAGTCTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATC Uromyces_pisi_AF426201_ ACTACCAGTGCA-ATATGATACAGTCTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATC Uromyces_vignae_AB115649_ ACTACCAGTGCA-ATATGATACAGTCTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGAGGGTGGTAAATTCCATC 'Melampsora larici-populina JQ042250' ACTACCAGTGCATTTGTGATACGGTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATC Puccinia_hordei_DQ354527_ TAAGGCTAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTA Puccinia_coronata_DQ354526_ TAAGGCTAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTA Puccinia_coronata_EU851141_ TAAGGCTAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTA Puccinia_graminis_HQ412648_ TAAGGCTAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTA Puccinia_graminis_AF522177_ TAAGGCTAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTA Puccinia_peperomiae_EU851146 TAAGGCTAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGTACTTTGGAAAGAGAGTTA 'Uromyces ari-triphylli DQ354529 ' TAAGGCTAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTA Uromyces_hawksworthii_KR821139 TAAGGCTAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTA Uromyces_hawksworthii_KR821140 TAAGGCTAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTA Uromyces_acuminatus_GU109282 TAAGGCTAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTA Puccinia_heucherae_DQ359702_ TAAGGCTAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTA Puccinia_heucherae_DQ359701_ TAAGGCTAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTA Puccinia_melanocephala_KP201838_ TAAGGCTAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTA Puccinia_melanocephala_KP201839_ TAAGGCTAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTA Puccinia_nakanishikii_GU058002_ TAAGGCTAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTA _Cumminsiella_mirabiliss_DQ354531 TAAGGCTAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTA Cumminsiella_mirabiliss_AF426206_ TAAGGCTAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTA Uromyces_ixiae_DQ917738_ TAAGGCTAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTA Uromyces_ixiae_DQ917739_ TAAGGCTAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTA Uromyces_appendiculatus_KM249870_ TAAGGCTAAATATTGATGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTA Uromyces_appendiculatus_AY745704_ TAAGGCTAAATATTGATGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTA Uromyces_trifolii_GU936634_ TAAGGCTAAATATTGATGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTA 'Uromyces viciae-fabae KJ716343 ' TAAGGCTAAATATTGATGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTA 'Uromyces viciae-fabae AF426199 ' TAAGGCTAAATATTGATGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTA Puccinia_hemerocallidis_DQ354519_ TAAGGCTAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTA Puccinia_hemerocallidis_GU058020_ TAAGGCTAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTA Uromyces_striatus_HQ412652_ TAAGGCTAAATATTGATGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTA Uromyces_striatus_HQ317512_ TAAGGCTAAATATTGATGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTA Uromyces_pisi_AF426201_ TAAGGCTAAATATTGATGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTA Uromyces_vignae_AB115649_ TAAGGCTAAATATTGATGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAAGAGAGTTA 'Melampsora larici-populina JQ042250' TAAGGCTAAATATAAGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAATAGAGTTA Puccinia_hordei_DQ354527_ ACAGTACGTGAAATTGTTAAAAGGGAAACACTTGAAGTTAGACTTGTTATTATTAGTTCAACC-TTTT----AAGGGAGT Puccinia_coronata_DQ354526_ ACAGTACGTGAAATTGTTAAAAGGGAAACACTTGAAGTTAGACTTGTTATTATTAGTTCAACC-TTTTCTG-AAGGGAGT Puccinia_coronata_EU851141_ ACAGTACGTGAAATTGTTAAAAGGGAAACACTTGAAGTTAGACTTGTTATTATTAGTTCAACC-TTTTCTT-AAGGGAGT Puccinia_graminis_HQ412648_ ACAGTACGTGAAATTGTTAAAAGGGAAACACTTGAAGTTAGACTTGTTATTATTAGTTCAACC-TTTTTATTAAGGGAGT Puccinia_graminis_AF522177_ ACAGTACGTGAAATTGTTAAAAGGGAAACACTTGAAGTTAGACTTGTTATTATTAGTTCAACC-TTTTTATTAAGGGAGT Puccinia_peperomiae_EU851146 ACAGTATGTGAAATTGTTAAAAGGGAAACACTTGAAGTTAGACTTGTTATTATTAGTTCAATCTTTTTCTAAAAAG?TGT 'Uromyces ari-triphylli DQ354529 ' ACAGTATGTGAAATTGTTAAAAGGGAAACACTTGAAGTTAGACTTGTTATTATTAGTTCAACC-CTTTTTT-AAGGGAGT Uromyces_hawksworthii_KR821139 ACAGTATGTGAAATTGTTAAAAGGGAAACACTTGAAGTTAGACTTGTTATTATTAGTTCAACC-CTTGCTTGAAGGGAGT Uromyces_hawksworthii_KR821140 ACAGTATGTGAAATTGTTAAAAGGGAAACACTTGAAGTTAGACTTGTTATTATTAGTTCAACC-CTTGCTTGAAGGGAGT Uromyces_acuminatus_GU109282 ACAGTACGTGAAATTGTTAAAAGGGAAACACTTGAAGTTAGACTTGTTATTATTAGTTCAACC-TTT-CT-AAAGGGAGT Puccinia_heucherae_DQ359702_ ACAGTACGTGAAATTGTTAAAAGGGAAACACTTGAAGTTAGACTTGTTATTATTAGTTCAACC-TTTTCTT-AAGGGAGT Puccinia_heucherae_DQ359701_ ACAGTACGTGAAATTGTTAAAAGGGAAACACTTGAAGTTAGACTTGTTATTATTAGTTCAACC-TTTTCTT-AAGGGAGT Puccinia_melanocephala_KP201838_ ACAGTGCGTGAAATTGTTAAAAGGGAAACACTTGAAGTTAGACTTGTTATTATTAGTTCAACC-TTTTTT-AAAGGGAGT Puccinia_melanocephala_KP201839_ ACAGTGCGTGAAATTGTTAAAAGGGAAACACTTGAAGTTAGACTTGTTATTATTAGTTCAACC-TTTTTT-AAAGGGAGT Puccinia_nakanishikii_GU058002_ ACAGTACGTGAAATTGTTAAAAGGGAAACACTTGAAGTTAGACTTGTTATTATTAGTTCAACC-TTTTT---AAGGGAGT _Cumminsiella_mirabiliss_DQ354531 ACAGTACGTGAAATTGTTAAAAGGGAAACACTTGAAGTTAGACTTGTTATTATTAGTTCAACC-CTTCT---ATGGGAGT Cumminsiella_mirabiliss_AF426206_ ACAGTACGTGAAATTGTTAAAAGGGAAACACTTGAAGTTAGACTTGTTATTATTAGTTCAACC-CTTCT---ATGGGAGT Uromyces_ixiae_DQ917738_ ACAGTACGTGAAATTGTTAAAAGGGAAACACTTGAAGTTAGACTTGTTATTATTAGTTCAACC-TTTTCTT-AAGGGAGT Uromyces_ixiae_DQ917739_ ACAGTACGTGAAATTGTTAAAAGGGAAACACTTGAAGTTAGACTTGTTATTATTAGTTCAACC-TTTTCTT-AAGGGAGT Uromyces_appendiculatus_KM249870_ ACAGTACGTGAAATTGTTAAAAGGGAAACAATTGAAGTTAGACTTGTTATTGTCAGTTCAACCTTTTTTTTAAAGGGAGT Uromyces_appendiculatus_AY745704_ ACAGTACGTGAAATTGTTAAAAGGGAAACAATTGAAGTTAGACTTGTTATTGTCAGTTCAACCTTTTTTTTAAAGGGAGT Uromyces_trifolii_GU936634_ ACAGTACGTGAAATTGTTAAAAGGGAAACAATTGAAGTTAGACTTGTTATTATTAGTTCAACC-TTTTT-TAAAGGGAGT 'Uromyces viciae-fabae KJ716343 ' ACAGTACGTGAAATTGTTAAAAGGGAAACAATTGAAGTTAGACTTGTTATTATCAGTTCAACC-TTTTC---AAGGGAGT 'Uromyces viciae-fabae AF426199 ' ACAGTACGTGAAATTGTTAAAAGGGAAACAATTGAAGTTAGACTTGTTATTATCAGTTCAACC-TTTTC---AAGGGAGT Puccinia_hemerocallidis_DQ354519_ ACAGTACGTGAAATTGTTAAAAGGGAAACACTTGAAGTTAGACTTGTTATTGTTAGTTCAACC-TTTTTAT--AGGGAGT Puccinia_hemerocallidis_GU058020_ ACAGTAYGTGAAATTGTTAAAAGGGAAACACTTGAAGTTAGACTTGTTATTGTTAGTTCAACC-TTTTTAT--AGGGAGT Uromyces_striatus_HQ412652_ ACAGTACGTGAAATTGTTAAAAGGGAAACAATTGAAGTTAGACTTGTTATTATCAGTTCAACT-TTTTT----AGRGAGT Uromyces_striatus_HQ317512_ ACAGTACGTGAAATTGTTAAAAGGGAAACAATTGAAGTTAGACTTGTTATTATCAGTTCAACC-TTTTT----AGGGAGT Uromyces_pisi_AF426201_ ACAGTACGTGAAATTGTTAAAAGGGAAACAATTGAAGTTAGACTTGTTATTATTAGTTCAACC-TTTTT--AAAGGGAGT Uromyces_vignae_AB115649_ ACAGTACGTGAAATTGTTAAAAGGGAAACAATTGAAGTTAGACTTGTTATTATTAGTTCAACCTTTTTT----AGGGAGT 'Melampsora larici-populina JQ042250' ACAGTACGTGAAATTGCTGAAAGGGAAACGTTTGAAGTTAGTTTTGTATTCGTTGGATCAGC--TT--CGCAAGGAGTGT Puccinia_hordei_DQ354527_ ATTCTAATGA-TTAACAGACCAACATCAATTTTTGAGTGTTGGATAAGGGTTTAAGGAAATGTAGCAGTCTTTG--G-CT Puccinia_coronata_DQ354526_ ATTCTAATGA-TTAACAGACCAACATCAATTTTTGAGTGTTGGAGAAGGGTTTAAGGAAATGTAGCAGTCT-TG--G-CT Puccinia_coronata_EU851141_ ATTCTAATGA-TTAACAGACCAACATCAATTTTTGAGTGTTGGAGAAGGGTTTAAGGAAATGTAGCAGTCTCTG--G-CT Puccinia_graminis_HQ412648_ ATTCTAATGA-TTAACAGACCAACATCAATTTTTGAGTGTTGGAGAAGGGTTTAAGGAAATGTAGCAGTCTTTG--G-CT Puccinia_graminis_AF522177_ ATTCTAATGA-TTAACAGACCAACATCAATTTTTGAGTGTTGGAGAAGGGTTTAAGGAAATGTAGCAGTCTTTG--G-CT Puccinia_peperomiae_EU851146 ATTCTAATGA-CTAACAGACCAACATCAATTTTTGGGTGTTGGAGAAGGGCTTGAGGAAATGTAGCAGCCTTTG--G-CT 'Uromyces ari-triphylli DQ354529 ' ATTCTAATGA-TTAACAGACCAACATCAATTTTTGAGTGTTGGAGAAGGGTTTAAGGAAATGTAGCAGTCTTTG--GACT Uromyces_hawksworthii_KR821139 ATTCTAATGA-TTAACAGACCAGCATCAATCTTTGAGTGTTGGAGAAGGGTTCAAGGAAATGTGGCAGTCTCTG--A-CT Uromyces_hawksworthii_KR821140 ATTCTAATGA-TTAACAGACCAGCATCAATCTTTGAGTGTTGGAGAAGGGTTCAAGGAAATGTGGCAGTCTCTG--A-CT Uromyces_acuminatus_GU109282 ATTCTAATGA-TTAACAGACCAACATCAATTTTTGAGTGTTGGAGAAGGGTTTAAGGAAATGTAGCAGTCTCTG--A-CT Puccinia_heucherae_DQ359702_ ATTCTAATGA-TTAACAGACCAGCATCAATTTTTGAGTGTTGGAGAAGGGTTTAAGGAAATGTAGCAGTCTCTG--A-CT Puccinia_heucherae_DQ359701_ ATTCTAATGA-TTAACAGACCAGCATCAATTTTTGAGTGTTGGAGAAGGGTTTAAGGAAATGTAGCAGTCTCTG--A-CT Puccinia_melanocephala_KP201838_ ATTCTAATGA-TTAACAGACCAACATCAATTTTTGGGTGTTGGAGAAGGGCTTAAGGAAATGTGGCAGTCTCTG--A-CT Puccinia_melanocephala_KP201839_ ATTCTAATGA-TTAACAGACCAACATCAATTTTTGGGTGTTGGAGAAGGGCTTAAGGAAATGTGGCAGTCTCTG--A-CT Puccinia_nakanishikii_GU058002_ ATTCTAATGA-TTAACAGACCAACATCAATTTTTGGGTGTTGGAGAAGGGCTTAAGGAAATGTAGCAGTTTCTG--A-CT _Cumminsiella_mirabiliss_DQ354531 ATTCTGATGA-TTAACAGACCAACATCAATTTTTGGGTGTTGGAGAAGGGTTTAAGGAAATGTAGCAGTCTCTG--A-CT Cumminsiella_mirabiliss_AF426206_ ATTCTGATGA-TTAACAGACCAACATCAATTTTTGGGTGTTGGAGAAGGGTTTAAGGAAATGTAGCAGTCTCTG--A-CT Uromyces_ixiae_DQ917738_ ATTCTAATGA-TTAACAGACCAACATCAATTTTTGAGTCTTGGAGAAGGGTTCAAGGAAATGTAGCAGTCTCTG--A-CT Uromyces_ixiae_DQ917739_ ATTCTAATGA-TTAACAGACCAACATCAATTTTTGAGTCTTGGAGAAGGGTTCAAGGAAATGTAGCAGTCTCTG--A-CT Uromyces_appendiculatus_KM249870_ ATTCTGATGA-TTAACAGACCAACATCAACTTTTGAGTGTTGGAGAAGGGTTTAAGGAAATGTAGCAGTCTCTG--A-TT Uromyces_appendiculatus_AY745704_ ATTCTGATGA-TTAACAGACCAACATCAACTTTTGAGTGTTGGAGAAGGGTTTAAGGAAATGTAGCAGTCTCTG--A-TT Uromyces_trifolii_GU936634_ ATTCTAATGG-TTAACAGACCAACATCAATTTTTGAGTGTTGGAGAAGGGTTTAAGGAAATGTAGCAGTCTCTG--A-CT 'Uromyces viciae-fabae KJ716343 ' ATTCTGATGA-TTAACAGACCAACATCAATTTTTGGGTGTTGGAGAAGGGTTCAAGGAAATGTAGCAGTCTCTG--A-CT 'Uromyces viciae-fabae AF426199 ' ATTCTGATGA-TTAACAGACCAACATCAATTTTTGGGTGTTGGAGAAGGGTTCAAGGAAATGTAGCAGTCTCTG--A-CT Puccinia_hemerocallidis_DQ354519_ ATTCTAATGA-TTAACAGACCAACATCAATTTTTGGGTGTTGGAGAAGGGTTTAAGGAAATGTAGCAGTCTCTG--A-CT Puccinia_hemerocallidis_GU058020_ ATTCTAATGA-TTAACAGACCAACATCAATTTTTGGGTGTTGGAGAAGGGTTCAAGGAAATGTAGCAGTCTCTG--A-CT Uromyces_striatus_HQ412652_ ATTCTGATGA-TTAACAGACCAACATCAATTTTTGAGTGTTGGAGAAGGGTTTAAGGAAATGTAGCAGTCTCTG--A-CT Uromyces_striatus_HQ317512_ ATTCTGATGA-TTAACAGACCAACATCAATTTTTGAGTGTTGGAGAAGGGTTTAAGGAAATGTAGCAGTCTCTG--A-CT Uromyces_pisi_AF426201_ ATTCTGATGA-TTAACAGACCAACATCAGTTTTTGAGTGTTGGAGAAGGGTTTAAGGAAATGTAGCAGTCTCTG--A-CT Uromyces_vignae_AB115649_ ATTCTAATGA-TTAACAGACCAACATCAACTTTTGAGTGTTGGAGAAGGGCTTAAGGAAATGTAGCAGTCTCTG--A-TT 'Melampsora larici-populina JQ042250' ATTCTGATGA-TAAGCAAGTCAACATCAATCTATGAGTGTCGGAGAAGGGTTTT-GAGAATGTAGCAATTTTTATTAATT Puccinia_hordei_DQ354527_ GTGTTATAGTCCTGAGCTTTGATACAATGCTTAAGATTGAGGAAGGC--AGTAAGCGC-----TTTA-TTGTGTGGAACA Puccinia_coronata_DQ354526_ GTGTTATAGTCCTGAGCTTTGATACAATGCTTAAGATTGAGGAAGGC--AGTAAGCGC-----TTTA-TTGTGTGGGACA Puccinia_coronata_EU851141_ GTGTTATAGTCCTGAACTTTGATACAATGCTTAAGATTGAGGAAGGC--AGTAAGCAC-----TTTA-TTGTGTGGGACA Puccinia_graminis_HQ412648_ GTGTTATAGTCCTGAGCTTTGATACAATGCTTAAGATTGAGGAAGGC--AGTAAGCGC---AATTTA-TTGTGTGGAACA Puccinia_graminis_AF522177_ GTGTTATAGTCCTGAGCTTTGATACAATGCTTAAGATTGAGGAAGGC--AGTAAGCGC---AATTTA-TTGTGTGGAACA Puccinia_peperomiae_EU851146 GTGTTATAGTTCTGAGCTTTGATATAATGCTTAAGATTGAGGAATGC--AGTAAGCAT----A-T-GTGTGTGTGGAACA 'Uromyces ari-triphylli DQ354529 ' GTGTTATAGTCCTGAGCTTTGATACAATGCTTAAGATTGAGGAAGGC--AGTAAGCATGGCTTTTTTGTTGTGTGGAACA Uromyces_hawksworthii_KR821139 GTGTTATAGTCCTGATCTTTGATACAATGCTTAAGATTGAGGAAGGC--AGTAAGCAC---AATTTGCTTGTGTGGAACA Uromyces_hawksworthii_KR821140 GTGTTATAGTCCTGATCTTTGATACAATGCTTAAGATTGAGGAAGGC--AGTAAGCAC---AATTTGCTTGTGTGGAACA Uromyces_acuminatus_GU109282 GTGTTATAGTCCTGAGCTTTGATACAATGCTTAAGATTGAGGAAGGC--AGTAAGCGC---AA-CTTGTTGTGTGGGACA Puccinia_heucherae_DQ359702_ GTGTTATATTCCTGAGCTTTGATACAATGCTTAAGATTGAGGAAGGC--AGTAAGCGC---AACCTTGTTGTGTGGAACA Puccinia_heucherae_DQ359701_ GTGTTATATTCCTGAGCTTTGATACAATGCTTAAGATTGAGGAAGGC--AGTAAGCGC---AACCTTGTTGTGTGGAACA Puccinia_melanocephala_KP201838_ GTGTTATAGACCTGAGCTTTGATACAATGCCTAAGATTGAGGAAGGC--AGTAAGCGCC--A--CTTGTGGTGTGGGACT Puccinia_melanocephala_KP201839_ GTGTTATAGACCTGAGCTTTGATACAATGCCTAAGATTGAGGAAGGC--AGTAAGCGCC--A--CTTGTGGTGTGGGACT Puccinia_nakanishikii_GU058002_ GTGTTATAGACCTGAGCTTTGATACAATGCTTAAGATTGAGGAAGGC--AGTAAGCGCC--A--CTTGTGGTGTGGGATT _Cumminsiella_mirabiliss_DQ354531 GTGTTATAGTCCTGAGCTTTGATACAATGCTTAAGATTGAGGAAGGC--AGTAAGCAC---AA-----TG-TGTGGAACA Cumminsiella_mirabiliss_AF426206_ GTGTTATAGTCCTGAGCTTTGATMCAATGCTTAAGATTGAGGAAGGC--AGTAAGC???????????????????????? Uromyces_ixiae_DQ917738_ GTGTTATAGTCCTGAGCTTTGATACAATGCTTAGGATTGAGGGAGGC--A?????????????????????????????? Uromyces_ixiae_DQ917739_ GTGTTATAGTCCTGAGCTTTGATACAATGCTTAGGATTGAGGGAGGC--A?????????????????????????????? Uromyces_appendiculatus_KM249870_ GTGTTATAGTCCTGAGCTTTGATACAATGCTTAAGGTTGAGGATTGC--AGTAAGCCTC--TTTTTTTTGAGGTGGAACA Uromyces_appendiculatus_AY745704_ GTGTTATAGTCCTGAGCTTTGATACAATGCTTAAGGTTGAGGATTGC--AGTAAGCCTC--TTTTTTTTGAGGTGGAACA Uromyces_trifolii_GU936634_ GTGTTATAGTCCTGAGCTTTGATACAATGCTTAAGATTGAGGATTGC--AGTAAGCCC-----TTTTTTG-GGTGGAACA 'Uromyces viciae-fabae KJ716343 ' GTGTTATAGTCCTGGGCTTTGATACAATGCTTAAGATTGAGGATTGC--AGTAAGCCCA---TTTTTTTG-GGTGGAACT 'Uromyces viciae-fabae AF426199 ' GTGTTATAGTCCTGGGCTTTGATACAATGCTTAAGATTGAGGATTGC--AGTAAGC???????????????????????? Puccinia_hemerocallidis_DQ354519_ GTGTTATAGTCCTGAGCTTTGATACAATGCTTAAGATTGAGGAATGC--AGTAAGCC-----TTTT----AGGTGGAACA Puccinia_hemerocallidis_GU058020_ GTGTTATAGTCCTGAGCTTTGATACAATGCTTAAGATTGAGGAATGC--AGTAAGCC-----TTTT----AGGTGGAACA Uromyces_striatus_HQ412652_ GTGTTATAGTCCTGAGCTTTGATACAATGCTTAAGATTGAGGATTGC--AGTAAGCCCC-----ATAAAGGGGTGGAACA Uromyces_striatus_HQ317512_ GTGTTATAGTCCTGAGCTTTGATACAATGCTTAAGATTGAGGATTGC--AGTAAGCCCC-----ATAAAGGGGTGGAACA Uromyces_pisi_AF426201_ GTGTTATAGTCCTGAGCTTTGATACAATGCTTAAGATTGAGGATTGC--AGTAAGC???????????????????????? Uromyces_vignae_AB115649_ GTGTTATAGTCCTGAGCTTTGATATAATGCTTAAGGTTGAGGATTGC--AGTAAGCA------TTT-AAG-G-TGGAACA 'Melampsora larici-populina JQ042250' GTGTTATAGCTTGAGACTTGGATACGATGCTTTGGATTGAGGAACGCGTAGTAAGC-------TTT----GAGCGGATTC Puccinia_hordei_DQ354527_ AATTAATGTTCTTCTTACTGAGGATGTTGGTGTAATAGCTTTAAATGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC Puccinia_coronata_DQ354526_ AATTAATGTTCTTCTTACTGAGGATGTTGGTGTAATAGCTTTAAATGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC Puccinia_coronata_EU851141_ AATTAATGTTCTTCTTACTGAGGATGTTGGTGTAATAGCTTTAAATGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC Puccinia_graminis_HQ412648_ AATTAATGTTCTTCTTACTGAGGATGTTGGTGTAATAGCTTTAAATGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC Puccinia_graminis_AF522177_ AATTAATGTTCTTCTTACTGAGGATGTTGGTGTAATAGCTTTAAATGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC Puccinia_peperomiae_EU851146 AATTGATGTTCTTCTTACTGAGGATGTTGGTGTAATAGCTTTAAATGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC 'Uromyces ari-triphylli DQ354529 ' AATTAATGTTCTTCTTACTGAGGATGTTGGTGTAATAGCTTTAAATGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC Uromyces_hawksworthii_KR821139 AATTAATGTTCTCCTTACTGAGGATGTTGGTGCAATAGCTTTAAATGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC Uromyces_hawksworthii_KR821140 AATTAATGTTCTCCTTACTGAGGATGTTGGTGCAATAGCTTTAAATGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC Uromyces_acuminatus_GU109282 AATTAATGTTCTTCTTACTGAGGATGTTGGTGTAATAGCTTTAAATGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC Puccinia_heucherae_DQ359702_ AATTAATGTTCTTCTTACTGAGGATGTTGGTGTAATAGCTTTAAATGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC Puccinia_heucherae_DQ359701_ AATTAATGTTCTTCTTACTGAGGATGTTGGTGTAATAGCT???????????????????????????????????????? Puccinia_melanocephala_KP201838_ AATTATAGTCCTTCTTACTGAGGATGTTGGTGTAATAGCTTTAAATGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC Puccinia_melanocephala_KP201839_ AATTATAGTCCTTCTTACTGAGGATGTTGGTGTAATAGCTTTAAATGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC Puccinia_nakanishikii_GU058002_ AACTATAGTTCTTCTTACTGAGGATGTTGGTGTAATAGCTTTAAATGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC _Cumminsiella_mirabiliss_DQ354531 AATCAATGTTCTTCTTACTGAGGATGTTGGTGTAATAGCTTTAAATGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC Cumminsiella_mirabiliss_AF426206_ ???????????????????????????????????????????????????????????????????????????????? Uromyces_ixiae_DQ917738_ ???????????????????????????????????????????????????????????????????????????????? Uromyces_ixiae_DQ917739_ ???????????????????????????????????????????????????????????????????????????????? Uromyces_appendiculatus_KM249870_ AATTATTGTTCTTCTTGCTGAGGATGTTGGTGCAATAGCTTTAAATGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC Uromyces_appendiculatus_AY745704_ AATTATTGTTCTTCTTGCTGAGGATGTTGGTGCAATAGCTTTAAATGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC Uromyces_trifolii_GU936634_ AATTATTGTTCTTCTTACTGAGGATGTTGGTGCAATAGCTTTAAATGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC 'Uromyces viciae-fabae KJ716343 ' AATTGTTGTTCTTCTTACTGAGGATGTTGGTGCAATAGCTTTAAATGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC 'Uromyces viciae-fabae AF426199 ' ???????????????????????????????????????????????????????????????????????????????? Puccinia_hemerocallidis_DQ354519_ AATTATTGTTCTTCTTACTGAGGATGTTGGTGCAATAGCTTTAAATGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC Puccinia_hemerocallidis_GU058020_ AATTATTGTTCTTCTTACTGAGGATGTTGGTGCAATAGCTTTAAATGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC Uromyces_striatus_HQ412652_ AATTATTGTTCTTCTTACTGAGGATGTTGGTGCAATAGCTTTAAATGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC Uromyces_striatus_HQ317512_ AATTATTGTTCTTCTTACTGAGGATGTTGGTGCAATAGCTTTAAATGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC Uromyces_pisi_AF426201_ ???????????????????????????????????????????????????????????????????????????????? Uromyces_vignae_AB115649_ AATTATTGTTCTTCTTACTGAGGATGTTGGTGCAATAGCTTTAAATG????????????????????????????????? 'Melampsora larici-populina JQ042250' GA--AAGGATCTCCTTACTATGGATGTTGGTGAAATAACTTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC Puccinia_hordei_DQ354527_ ATGCTTGCAAGTATTTGGGTGCTTGAAACCCTTATGCGTAATGAAAGTAAATGT-AAATGGGA--TCTGTCAA--AAGTG Puccinia_coronata_DQ354526_ ATGCTTGCAAGTATTTGGGTGCTTGAAACCCTTATGCGTAATGAAAGTAAATGT-AAATGGGA--TCTGTYAC--AAGTG Puccinia_coronata_EU851141_ ATGCTTGCAAGTATTTGGGTGCTTGAAACCCTTATGCGTAATGAAAGTAAATGT-AAATGGGATCTCTGTCAC--AAGTG Puccinia_graminis_HQ412648_ ATGCTTGCAAGTATTTGGGTGCTTGAAACCCTTATGCGTAATGAAAGTAAATGT-AAATGGGA--TCTGTCAA--AAGTG Puccinia_graminis_AF522177_ ATGCTTGCAAGTATTTGGGTGCTTGAAACCCTTATGCGTAATGAAAGTAAATGT-AAATGGGA--TCTGTCAA--AAGTG Puccinia_peperomiae_EU851146 ATGCTTGCAAGTATTTGGGTGCTTAAAACCCTTATGCACAATGAAAGTAAATGT-AAATGGGA--TCTTTTAATGAAGTG 'Uromyces ari-triphylli DQ354529 ' ATGCTTGCAAGTATTTGGGTGCTTGAAACCCTTATGCGTAATGAAAGTAAATGT-AAATGGGA--TCTGTGAA--AAGTG Uromyces_hawksworthii_KR821139 ATGCTTGCAAGTATTTGGGTGCTTGAAACCCTTATGCGTAATGAAAGTAAATGT-AAATGGGA--TCTGTTAA--AAGTG Uromyces_hawksworthii_KR821140 ATGCTTGCAAGTATTTGGGTGCTTGAAACCCTTATGCGTAATGAAAGTAAATGT-AAATGGGA--TCTGTTAA--AAGTG Uromyces_acuminatus_GU109282 ATGCCTGCAAGTATTTGGGTGCTTGAAACCCTTATGCGTAATGAAAGTAAATGT-AAATGGGA--TCTGTTAA--AAGTG Puccinia_heucherae_DQ359702_ ATGCTTGCGAGTATTTGGGTGTTTGAAACCCTTATGCGTAATGAAAGTAAATGT-AAATGGGA--TCTGTCAA--AAGTG Puccinia_heucherae_DQ359701_ ???????????????????????????????????????????????????????????????????????????????? Puccinia_melanocephala_KP201838_ ATGCTTGCAAGTATTTGGGTGATTGAAACCCTTATGCGTAATGAAAGTGAATGT-AAATGGGA--TCTGTCAA--AAGTG Puccinia_melanocephala_KP201839_ ATGCTTGCAAGTATTTGGGTGATTGAAACCCTTATGCGTAATGAAAGTGAATGT-AAATGGGA--TCTGTCAA--AAGTG Puccinia_nakanishikii_GU058002_ ATGCTTGCGAGTATTTGGGTGATTGAAACCCTTATGCGTAATGAAAGTGAATGT-AAATGGGA--TCTGTCAA--AAGTG _Cumminsiella_mirabiliss_DQ354531 ATGCTTGCGAGTATTTGGGTGCTTGAAACCCTTATGCGTAATGAAAGTGAATGT-AAATGGGATCTTTGTCAAAGAAGTG Cumminsiella_mirabiliss_AF426206_ ???????????????????????????????????????????????????????????????????????????????? Uromyces_ixiae_DQ917738_ ???????????????????????????????????????????????????????????????????????????????? Uromyces_ixiae_DQ917739_ ???????????????????????????????????????????????????????????????????????????????? Uromyces_appendiculatus_KM249870_ ATGCCTGCGAGTATTTGGGTGTTTGAAACCCTTATGCATAATGAAAGTAAATGT-AAATGAGAACTCTTTTT---GAGTG Uromyces_appendiculatus_AY745704_ ATGCCTGCGAGTATTTGGGTGTTTGAAACCCTTATGCATAATGAAAGTAAATGT-AAATGAGAACTCTTTTT---GAGTG Uromyces_trifolii_GU936634_ ATGCTTGCGAGTATTTGGGTGTTTGAAACCCTTATGCATAATGAAAGTAAATGT-AAATGGGAACT-TTTTT---AAGTG 'Uromyces viciae-fabae KJ716343 ' ATGCCTGCGAGTATTTGGGTGTTTGAAACCCTTATGCATAATGAAAGTAAATGT-AAATGGGAACT-TTTTT---AAGTG 'Uromyces viciae-fabae AF426199 ' ??????????????????????????????????????????????????????-????????????????????????? Puccinia_hemerocallidis_DQ354519_ ATGCTTGCGAGTATTTGGGTGTTTGAAACCCTTATGCATAATGAAAGTAAATGT-AAATGGGACCT-TTTTT---AAGTG Puccinia_hemerocallidis_GU058020_ ATGCTTGCGAGTATTTGGGTGTTTGAAACCCTTATGCATAATGAAAGTAAATGT-AAATGGGAACT-TTTTT---AAGTG Uromyces_striatus_HQ412652_ ATGCCTGCGAGTATTTGGGTGTTTGAAACCCTTATGCATAATGAAAGTAAATGT-AAATGGGAACT-TTTTT---AAGTG Uromyces_striatus_HQ317512_ ATGCCTGCGAGTATTTGGGTGTTTGAAACCCTTATGCATAATGAAAGTAAATGT-AAATGGGAACT-TTTTT---AAGTG Uromyces_pisi_AF426201_ ???????????????????????????????????????????????????????????????????????????????? Uromyces_vignae_AB115649_ ???????????????????????????????????????????????????????????????????????????????? 'Melampsora larici-populina JQ042250' ATGCTTGCGAGTATTAGGGTG-TTGAAACCCGAATGCGTAATGAAAGTGAATTTCAGATGTGA--TCCGC-A---AGGTG Puccinia_hordei_DQ354527_ CACCATTGACCAGTCCAGAT-TATTTATATGATGGTACTGAGTAAGAGCAAGTATGTTGGGACCCGAAAGATGGTGAACT Puccinia_coronata_DQ354526_ CACCATTGACCAGTCCAGAT-TATTTATATGATGGTACTGAGTAAGAGCAAGTATGTTGGGACCCGAAAGATGGTGAACT Puccinia_coronata_EU851141_ CACCATTGACCAGTCCAGAT-TATTTATATGATGGTACTGAGTAAGAGCAAGTATGTTGGGACCCGAAAGATGGTGAACT Puccinia_graminis_HQ412648_ CACCATTGACCAGTCCAGAT-TATTTATATGATGGTACTGAGTAAGAGCAAGTATGTTGGGACCCGAAAGATGGTGAACT Puccinia_graminis_AF522177_ CACCATTGACCAGTCCAGAT-TATTTATATGATGGTACTGAGTAAGAGCAAGTATGTTGGGACCCGAAAGATGGTGAACT Puccinia_peperomiae_EU851146 CACCATTGACCAGTCCAGAT-TATTTATATGATGGTACTGAGTAAGAGCAAGTATGTTGGGACCCGAAAGATGGTGAACT 'Uromyces ari-triphylli DQ354529 ' CACCATTGACCAGTCCAGAT-TATTTATATGATGGTACTGAGTAAGAGCAAGTATGTTGGGACCCGAAAGATGGTGAACT Uromyces_hawksworthii_KR821139 CACCATTGACCAGTCCAGAT-TATTTATATGATGGTACTGAGTAAGAGCAAGTATGTTGGGACCCGAAAGATGGTGAACT Uromyces_hawksworthii_KR821140 CACCATTGACCAGTCCAGAT-TATTTATATGATGGTACTGAGTAAGAGCAAGTATGTTGGGACCCGAAAGATGGTGAACT Uromyces_acuminatus_GU109282 CACCATTGACCAGTCCAGAT-TATTTATATGATGGTACTGAGTAAGAGCAAGTATGTTGGGACCCGAAAGATGGTGAACT Puccinia_heucherae_DQ359702_ CACCATTGACCAGTCCAGAT-TATTTATATGATGGTACTGAGTAAGAGCAAGTATGTTGGGACCCGAAAGATGGTGAACT Puccinia_heucherae_DQ359701_ ???????????????????????????????????????????????????????????????????????????????? Puccinia_melanocephala_KP201838_ CACCATTGACCAGTCCAGAT-TATTTATATGATGGTACTGAGTAAGAGCAAGTATGTTGGGACCCGAAAGATGGTGAACT Puccinia_melanocephala_KP201839_ CACCATTGACCAGTCCAGAT-TATTTATATGATGGTACTGAGTAAGAGCAAGTATGTTGGGACCCGAAAGATGGTGAACT Puccinia_nakanishikii_GU058002_ CACCATTGACCAGTCCAGAT-TATTTATATGATGGTACTGAGTAAGAGCAAGTATGTTGGGACCCGAAAGATGGTGAACT _Cumminsiella_mirabiliss_DQ354531 CACCATTGACCAGTCCAGATATATTTATATGATGGTACTGAGTAAGAGCAAGTATGTTGGGACCCGAAAGATGGTGAACT Cumminsiella_mirabiliss_AF426206_ ???????????????????????????????????????????????????????????????????????????????? Uromyces_ixiae_DQ917738_ ???????????????????????????????????????????????????????????????????????????????? Uromyces_ixiae_DQ917739_ ???????????????????????????????????????????????????????????????????????????????? Uromyces_appendiculatus_KM249870_ CACCATTGACCAGTCCAGAT-TATTTATATGATGGTACTGAGTAAGAGCAAGTATGTTGGGACCCGAAAGATGGTGAACT Uromyces_appendiculatus_AY745704_ CACCATTGACCAGTCCAGAT-TATTTATATGATGGTACTGAGTAAGAGCAAGTATGTTGGGACCCGAAAGATGGTGAACT Uromyces_trifolii_GU936634_ CACCATTGACCAGTCCAGAT-TATTTATATGATGGTACTGAGTAAGAGCAAGTATGTTGGGACCCGAAAGATGGTGAACT 'Uromyces viciae-fabae KJ716343 ' CACCATTGACCAGTCCAGAT-TATTTATATGATGGTACTGAGTAAGAGCAAGTATGTTGGGACCCGAAAGATGGTGAACT 'Uromyces viciae-fabae AF426199 ' ???????????????????????????????????????????????????????????????????????????????? Puccinia_hemerocallidis_DQ354519_ CACCATTGACCAGTCCAGAT-TATTTATATGATGGTACTGAGTAAGAGCAAGTATGTTGGGACCCGAAAGATGGTGAACT Puccinia_hemerocallidis_GU058020_ CACCATTGACCAGTCCAGAT-TATTTATATGATGGTACTGAGTAAGAGCAAGTATGTTGGGACCCGAAAGATGGTGAACT Uromyces_striatus_HQ412652_ CACCATTGACCAGTCCAGAT-TATTTATATGATGGTACTGAGTAAGAGCAAGTATGTTGGGACCCGAAAGATGGTGAACT Uromyces_striatus_HQ317512_ CACCATTGACCAGTCCAGAT-TATTTATATGATGGTACTGAGTAAGAGCAAGTATGTTGGGACCCGAAAGATGGTGAACT Uromyces_pisi_AF426201_ ???????????????????????????????????????????????????????????????????????????????? Uromyces_vignae_AB115649_ ???????????????????????????????????????????????????????????????????????????????? 'Melampsora larici-populina JQ042250' CAACATCGACCAGTCTGGAT-CATTTATGTGAAGGTACTGAGTAAGAGCAAGTATGTTAGGACCCGAAAGATGGTGAACT Puccinia_hordei_DQ354527_ ATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTT Puccinia_coronata_DQ354526_ ATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTT Puccinia_coronata_EU851141_ ATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTT Puccinia_graminis_HQ412648_ ATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTT Puccinia_graminis_AF522177_ ATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTT Puccinia_peperomiae_EU851146 ATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAAGCTTGTAGCAGTTCTGACGTGCAAATCGATTGTCAAATTT 'Uromyces ari-triphylli DQ354529 ' ATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAAGCTTGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTT Uromyces_hawksworthii_KR821139 ATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAAGCTTGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTT Uromyces_hawksworthii_KR821140 ATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAAGCTTGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTT Uromyces_acuminatus_GU109282 ATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTT Puccinia_heucherae_DQ359702_ ATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTT Puccinia_heucherae_DQ359701_ ???????????????????????????????????????????????????????????????????????????????? Puccinia_melanocephala_KP201838_ ATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTT Puccinia_melanocephala_KP201839_ ATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTT Puccinia_nakanishikii_GU058002_ ATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTT _Cumminsiella_mirabiliss_DQ354531 ATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTT Cumminsiella_mirabiliss_AF426206_ ???????????????????????????????????????????????????????????????????????????????? Uromyces_ixiae_DQ917738_ ???????????????????????????????????????????????????????????????????????????????? Uromyces_ixiae_DQ917739_ ???????????????????????????????????????????????????????????????????????????????? Uromyces_appendiculatus_KM249870_ ATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTT Uromyces_appendiculatus_AY745704_ ATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTT Uromyces_trifolii_GU936634_ ATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTT 'Uromyces viciae-fabae KJ716343 ' ATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTT 'Uromyces viciae-fabae AF426199 ' ???????????????????????????????????????????????????????????????????????????????? Puccinia_hemerocallidis_DQ354519_ ATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTT Puccinia_hemerocallidis_GU058020_ ATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTT Uromyces_striatus_HQ412652_ ATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTT Uromyces_striatus_HQ317512_ ATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTT Uromyces_pisi_AF426201_ ???????????????????????????????????????????????????????????????????????????????? Uromyces_vignae_AB115649_ ???????????????????????????????????????????????????????????????????????????????? 'Melampsora larici-populina JQ042250' ATGCCTGGATAGGGTGAAGTCAGAGGAAACTCTGATGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTAGAATCT Puccinia_hordei_DQ354527_ GGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAGTTTCCCTCAGGATAGCAAAGACTCGT Puccinia_coronata_DQ354526_ GGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAGTTTCCCTCAGGATAGCAAAGACTCGT Puccinia_coronata_EU851141_ GGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAGTTTCCCTCAGGATAGCAAAGACTCGT Puccinia_graminis_HQ412648_ GGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAGTTTCCCTCAGGATAGCAAAGACTCGT Puccinia_graminis_AF522177_ GGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAGTTTCCCTCAGGATA???????????? Puccinia_peperomiae_EU851146 GGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCTGAAGTTTCCCTCAGGATAGCAAAGACTTAT 'Uromyces ari-triphylli DQ354529 ' GGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAGTTTCCCTCAGGATAGCAAAGACTTGT Uromyces_hawksworthii_KR821139 GGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAGTTTCCCTCAGGATAGCAAAGACTTGT Uromyces_hawksworthii_KR821140 GGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAGTTTCCCTCAGGATAGCAAAGACTTGT Uromyces_acuminatus_GU109282 GGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAGTTTCCCTCAGGATAGCAAAGACTCGT Puccinia_heucherae_DQ359702_ GGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAGTTTCCCTCAGGATAGCAAAGACTCGT Puccinia_heucherae_DQ359701_ ???????????????????????????????????????????????????????????????????????????????? Puccinia_melanocephala_KP201838_ GGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAGTTTCCCTCAGGATAGCAAAGACTTAT Puccinia_melanocephala_KP201839_ GGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAGTTTCCCTCAGGATAGCAAAGACTTAT Puccinia_nakanishikii_GU058002_ GGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAGTTTCCCTCAGGATAGCAAAGACTCGT _Cumminsiella_mirabiliss_DQ354531 GGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAGTTTCCCTCAGGATAGCAAAGACTCGT Cumminsiella_mirabiliss_AF426206_ ???????????????????????????????????????????????????????????????????????????????? Uromyces_ixiae_DQ917738_ ???????????????????????????????????????????????????????????????????????????????? Uromyces_ixiae_DQ917739_ ???????????????????????????????????????????????????????????????????????????????? Uromyces_appendiculatus_KM249870_ GGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAGTTTCCCTCAGGATAGCAAAGACTTGT Uromyces_appendiculatus_AY745704_ GGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAGTTTCCCTCAGGATAGCAAAGACTTGT Uromyces_trifolii_GU936634_ GGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAGTTTCCCTCAGGATAGCAAAGACTTAT 'Uromyces viciae-fabae KJ716343 ' GGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAGTTTCCCTCAGGATAGCAAAGACTTAT 'Uromyces viciae-fabae AF426199 ' ???????????????????????????????????????????????????????????????????????????????? Puccinia_hemerocallidis_DQ354519_ GGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCCRAAGTTTCCCTCAGGATAGCAAAGACTTAT Puccinia_hemerocallidis_GU058020_ GGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCCAAAGTTTCCCTCAGGATAGCAAAGACTTAT Uromyces_striatus_HQ412652_ GGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAGTTTCCCTCAGGATAGCAAAGACTTRT Uromyces_striatus_HQ317512_ GGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAGTTTCCCTCAGGATAGCAAAGACTTAT Uromyces_pisi_AF426201_ ???????????????????????????????????????????????????????????????????????????????? Uromyces_vignae_AB115649_ ???????????????????????????????????????????????????????????????????????????????? 'Melampsora larici-populina JQ042250' GGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAGTTTCCCTCAGGATAGCAAAGACTTTT Puccinia_hordei_DQ354527_ --ATCAGTTTTATGAGGTAAAGCGAATGATTAGAGGCCTTGGGGATGAAACATCCTTAACCTATTCTCAAACTTTAA Puccinia_coronata_DQ354526_ --ATCAGTTTTATGAGGTAAAGCGAATGATTAGAGGCCTTGGGGATGAAACATCCTTAACCTATTCTCAAACTTTAA Puccinia_coronata_EU851141_ --ATCAGTTTTATGAGGTAAAGCGAATGATTAGAGCCCTTGGGGATGAAACATCCTTAACCTATTCTCAAACTTTAA Puccinia_graminis_HQ412648_ --ATCAGTTTTATGAGGTAAAGCGAATGATTAGAGGCCTTGGGGATGAAACATCCTTAACCTATTCTCAAACTTTAA Puccinia_graminis_AF522177_ ????????????????????????????????????????????????????????????????????????????? Puccinia_peperomiae_EU851146 --ATCAGTTTTATGAGGTAAAGCGAATGATTAGAGGCCTTGGGGATGAAACATCCTTAACCTATTCTCAAACTTTAA 'Uromyces ari-triphylli DQ354529 ' --ATCAGTTTTATGAGGTAAAGCGAATGATTAGAGGCCTTGGGGATGAAACATCCTTAACCTATTCTCAAACTTTAA Uromyces_hawksworthii_KR821139 --ATCAGTTTTATGAGGTAAAGCGAATGATTAGAGGCCTTGGGGATGAAACATCCTTAACCTATTCTCAAACTTTAA Uromyces_hawksworthii_KR821140 --ATCAGTTTTATGAGGTAAAGCGAATGATTAGAGGCCTTGGGGATGAAACATCCTTAACCTATTCTCAAACTTTAA Uromyces_acuminatus_GU109282 --ATCAGTTTTATGAGGTAAAGCGAATGATTAGAGGCCTTGGGGATGAAACATCCTTAACCTATTCTCAAACTTTAA Puccinia_heucherae_DQ359702_ --ATCAGTTTTATGAGGTAAAGCGAATGATTAGAGGCCTTGGGGATGAAACATCCTTAACCTATTCTCAAACTTTAA Puccinia_heucherae_DQ359701_ ????????????????????????????????????????????????????????????????????????????? Puccinia_melanocephala_KP201838_ --ATCAGTTTTATGAGGTAAAGCGAATGATTAGAGGCCTTGGGGATGAAACATCCTTAACCTATTCTCAAACTTTAA Puccinia_melanocephala_KP201839_ --ATCAGTTTTATGAGGTAAAGCGAATGATTAGAGGCCTTGGGGATGAAACATCCTTAACCTATTCTCAAACTTTAA Puccinia_nakanishikii_GU058002_ --ATCAGTTTTATGAGGTAAAGCGAATGATTAGAGGCCTTGGGGATGAAACATCCTTAACCTATTCTCAAACTTTAA _Cumminsiella_mirabiliss_DQ354531 --ATCAGTTTTATGAGGTAAAGCGAATGATTAGAGGCCTTGGGGATGAAACATCCTTAACCTATTCTCAAACTTTAA Cumminsiella_mirabiliss_AF426206_ ????????????????????????????????????????????????????????????????????????????? Uromyces_ixiae_DQ917738_ ????????????????????????????????????????????????????????????????????????????? Uromyces_ixiae_DQ917739_ ????????????????????????????????????????????????????????????????????????????? Uromyces_appendiculatus_KM249870_ --ATCAGTTTTATGAGGTAAAGCGAATGATTAGAGGCCTTGGGGATGAAACATCCTTAACCTATTCTCAAACTTTAA Uromyces_appendiculatus_AY745704_ --ATCAGTTTTATGAGGTAAAGCGAATGATTAGAGGCCTTGGGGATGAAACATCCTTAACCTATTCTCAAACTTTAA Uromyces_trifolii_GU936634_ --ATCAGTTTTATGAGGTAAAGCGAATGATTAGAGGCCTTGGGGATGAAACATCCTTAACCTATTCTCAAACTTTAA 'Uromyces viciae-fabae KJ716343 ' --ATCAGTTTTATGAGGTAAAGCGAATGATTAGAGGCCTTGGGGATGAAACATCCTTAACCTATTCTCAAACTTTAA 'Uromyces viciae-fabae AF426199 ' ????????????????????????????????????????????????????????????????????????????? Puccinia_hemerocallidis_DQ354519_ --ATCAGTTTTATGAGGTAAAGCGAATGATTAGAGGCCTTGGGGATGAAACATCCTTAACCTATTCTCAAACTTTAA Puccinia_hemerocallidis_GU058020_ --ATCAGTTTTATGAGGTAAAGCAAATGATTAGAGGCCTTGGGGATGAAACATCCTTAACCTATTCTCAAACTTTAA Uromyces_striatus_HQ412652_ --ATCAGTTTTATGAGGTAAAGCGAATGATTAGAGGCCTTGGGGATGAAACATCCTTAACCTATTCTCAAACTTTAA Uromyces_striatus_HQ317512_ --ATCAGTTTTATGAGGTAAAGCGAATGATTAGAGGCCTTGGGGATGAAACATCCTTTTCCTATTCTCAAACTTTAA Uromyces_pisi_AF426201_ ????????????????????????????????????????????????????????????????????????????? Uromyces_vignae_AB115649_ ????????????????????????????????????????????????????????????????????????????? 'Melampsora larici-populina JQ042250' AAATTAGTTTTATGAGGTAAAGCGAATGATTAGAGGGCTTGGGAATGTAATGTTCTTAACCTATTCTCAAACTTTAA ; END; BEGIN MRBAYES; set autoclose = yes; Lset nst = 6 rates = invgamma; Prset statefreqpr = dirichlet ( 1 , 1 , 1 , 1 ); END; mcmc ngen = 10000000 samplefreq = 1000; sump nruns = 2 burnin = 2500; sumt nruns = 2 burnin = 2500; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1037; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1037; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1037; END; BEGIN TREES; Title 'Trees from "tree_Uromyces"'; LINK Taxa = Taxa; TRANSLATE [0] 1 Puccinia_hordei_DQ354527_, [1] 2 Puccinia_coronata_DQ354526_, [2] 3 Puccinia_coronata_EU851141_, [3] 4 Puccinia_graminis_HQ412648_, [4] 5 Puccinia_graminis_AF522177_, [5] 6 Puccinia_peperomiae_EU851146, [6] 7 'Uromyces ari-triphylli DQ354529 ', [7] 8 Uromyces_hawksworthii_KR821139, [8] 9 Uromyces_hawksworthii_KR821140, [9] 10 Uromyces_acuminatus_GU109282, [10] 11 Puccinia_heucherae_DQ359702_, [11] 12 Puccinia_heucherae_DQ359701_, [12] 13 Puccinia_melanocephala_KP201838_, [13] 14 Puccinia_melanocephala_KP201839_, [14] 15 Puccinia_nakanishikii_GU058002_, [15] 16 _Cumminsiella_mirabiliss_DQ354531, [16] 17 Cumminsiella_mirabiliss_AF426206_, [17] 18 Uromyces_ixiae_DQ917738_, [18] 19 Uromyces_ixiae_DQ917739_, [19] 20 Uromyces_appendiculatus_KM249870_, [20] 21 Uromyces_appendiculatus_AY745704_, [21] 22 Uromyces_trifolii_GU936634_, [22] 23 'Uromyces viciae-fabae KJ716343 ', [23] 24 'Uromyces viciae-fabae AF426199 ', [24] 25 Puccinia_hemerocallidis_DQ354519_, [25] 26 Puccinia_hemerocallidis_GU058020_, [26] 27 Uromyces_striatus_HQ412652_, [27] 28 Uromyces_striatus_HQ317512_, [28] 29 Uromyces_pisi_AF426201_, [29] 30 Uromyces_vignae_AB115649_, [30] 31 'Melampsora larici-populina JQ042250'; TREE con_50_majrule = (31:0.062611,((10:0.001543,(18:0.00108,19:0.001096):0.008844):0.00339,((2:0.000659,3:0.003507):0.005187,(1:0.002547,(4:0.000645,5:0.000686):0.003254):0.002474,((6:0.029903,7:0.005662):0.004568,(8:0.000639,9:0.000641):0.012123):0.008059):0.003195,((11:0.000756,12:0.000897):0.004959,((16:0.001063,17:0.001185):0.00698,((15:0.007448,(13:0.000635,14:0.000636):0.010221):0.007102,((25:0.001483,26:0.001643):0.003446,(22:0.000704,29:0.00271,((23:0.001037,24:0.001077):0.003907,(27:0.001582,28:0.002501):0.004842,(30:0.010572,(20:0.000638,21:0.000632):0.00596):0.006668):0.002275):0.006294):0.018918):0.002635):0.004162):0.002563):0.062611)[% ] [% ] [% setBetweenBits = selected ]; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1433861001187; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4823510372078791545; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 5129805807111786881; mqVersion 301; checksumv 0 3 1263460244 null getNumChars 1037 numChars 1037 getNumTaxa 31 numTaxa 31 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 646775.0 sumSquares -2.7670116110564295E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1366 650; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #4823510372078791545 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #4823510372078791545; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; getTable; tell It; rowNamesWidth 197; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1266 578; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #4823510372078791545 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 881.1433860331637.6563991419377450680; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1266 578; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;