#NEXUS [written Thu Jun 18 11:37:56 CST 2015 by Mesquite version 3.03 (build 702) at Yu-2015/192.168.1.167] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=45; TAXLABELS Dracoscirpoides_falsa Hellmuthia_membranacea Ficinia_pinguior_ Isolepis_aucklandica Isolepis_bicolor Isolepis_cernua_FA Isolepis_costata Isolepis_crassiuscula_JP Isolepis_crassiuscula_NZ Isolepis_diabolica Isolepis_digitata Isolepis_fluitans_SP Isolepis_lenticularis_1 Isolepis_lenticularis_2 Isolepis_fluitans_KN Isolepis_fluitans_ET Isolepis_gaudichaudiana Isolepis_graminoides Isolepis_habra Isolepis_hystrix Isolepis_inundata Isolepis_inyangensis Isolepis_keniaensis Isolepis_levynsiana Isolepis_ludwigii_ Isolepis_meruensis Isolepis_montivaga Isolepis_pellocolea Isolepis_platycarpa Isolepis_pottsii Isolepis_producta Isolepis_prolifera_NZ Isolepis_prolifera_SA Isolepis_reticularis Isolepis_rubicunda Isolepis_sepulcralis Isolepis_setacea_KN Isolepis_setacea_NP Isolepis_striata Isolepis_subtilissima Isolepis_sulcata Isolepis_varians Isolepis_venustula Isolepis_verruculosa Isolepis_wakefieldiana ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=583; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX Dracoscirpoides_falsa TGAACACGTCACATAAAGCTACCGAGGAGGAGTTTTCT?CCTCGGCCCCACCGACACCCGGCCCTT?GGCCTGGTGTCGGAATACGGCGCGGAATG?CGCCAAGGAACACTGATTTGCTGAGGCAGACGGCTATATGCTAGTGCTGCTGAGGCCAACGAAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGACCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCGGTCA?CCTCTCCATAT?ACTTGTGGTAGGGGACTGGCCAGATGCGGACATTGGCCCTCCGAGCCATAAA?????GGTGCGGTGGGCTGAAGTGCACGGTCGTCGGATGGTGCCGGGATCGGCGAGTGGTGGGCTATACTGCGCATGCCAACCCCGGCCGCCATGTTGACAGATGACCTTTTTCGACCCCC?????TAACAAGGAGTTTGTCGTTACAGCACTTTGTTGTGCGGCATCTTCGGA Hellmuthia_membranacea TGAACATGTAACATAACGCTGCCG?GGG??AGAGCTTTCTCCTCGGCCCCACCGGCCCTGGTTCTTTGGCCGGGTGCCGGAATACGGCGCGAAATGTCGCCAAGGAACACTGACTTGCTGAGGCGGACGGCAGCATGCTCGTGCCGCTGAGGCCAACAAAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCAATAAAAAACGTACCGAAATGCGATACGTGGTGTGAATTGCAAAATCCCGTGAACCATCAAGTCTTTGAACGCAAGTTGCGCCCAAGGGACCCTCCCAAGGGCACGCCTGCCTGGGCGTTAAAAGCCAATCAACGCTCCACATA????????????GCTTGTGGTTGGGGACCGGCCAAATGCGAACAATGGCCCTCCAATCCATGAA????TGGCACGGTGGGCTGAAGTGCACGGTCGTCGTATGGTGTTGGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCCGCCATGTCGGCATATGGCCTTTTTTGA?CCCC?????TAACAAGGAAACTGTCGTCGCAGCATCCTGTTGTGCGGCATCTTCGGA Ficinia_pinguior_ ????CATGTAACATAATGCTACCG?GGG??AGTACCATCTCCTCGGCCCTGCCGGCCCCGGCCTATTGGTCGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGAATTGCTGAGGCGGACGACAATACGCTCGTACTGCTGATGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACACTCAGTCGACCCCTGCACACACCGTGTGATAGAGGACTGACCTGATGTGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCCGAAGTTAATGGTCGTCGCATGGTAACGGGATCGGCGAGTGGTGGGCTA??CTGCGCAAGCCAATCCCGGTTGCCATGTCGACATATTGCCTCTTTTGAACCCC?????AAATGAGGAGATTGTCGTCGCAGCATCTAGTTGTGCGGCAATTTCGGA Isolepis_aucklandica TGAACACGTAACATAATGCTGCCG?GGG??AGTTCCATCTCCTCGGCCCTGCCGGCCCCAGCTTATTGGCCGGGTGTCGGAAAACGGTGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGACGACAATACGCTCGTACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCTGTCAA????????????CCTTTTTACAGAGGATTGACTTGACGCGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCTGAAGTGAATGGTCGTCGGATGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTGCCATTTCGACGTATGGCCTCTATA???CCCCAGTCGAAACGAGGGGATTGTTGTCACAGCATCTTGTTGCGGGACAATTTCGGA Isolepis_bicolor TGAACACGTAACATAATGCTACCG?GGG??AGTTCCATCTCCTCGGCCCTGCCGGCCCCAGCTTATTGGCTGGGCGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGGCGACAATACGCTCGTACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCCGTCAA????????????CCTTTTTACAGAGGATTGACTCGACGCGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGCGGGCTGAAGTGAATGGTCGTCGGATGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTTCCATTTCGACGTATGGCCTCTGTA???CCCCAGTCGAAACGAGGGGATTGTTGTCACAGCATCTTGTTGTGGGGCAATTTCGGA Isolepis_cernua_FA TGAACATGTAACGTAATGCTACCG?GGG??AGAGCCATCTCCTCGGCCCTGCCGACCCCAGCCAATTGGTTGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGGTGACAATATG?TTGCACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACACTCGGTCAA????????????CCTTTATTTAGAGGACGGACTTGATGTGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCTGAAGTTAATGGTCGTCGGATGGTGACTTGATCGACGAGTTGTGGGCTG??CTGCGCATGTCGATCAAGGCTACCATTTCGATGTATGGCCTCCATA???CCCCAGTCGTAACGAGGGGATTGTTGTTGCAGCATCTTGTTGTTTCACAATTTCGGA Isolepis_costata TGAACACGTAACATAACGCTGCCG?GGG??AGTTCCATCTCCTCGGCCCTGCCGGCCCCAGATTATTGGCTGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGCCGACAATACGCTCGTACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCTGTCAA????????????CCTTTTTA???????TTGACTTGACGTGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCTGAAGTGAATGGTCGTCGGATGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTGCCATTTGGACGTATGGCCTCTACA???CCCCAGTCGAAACGAGGGGATTGTTGTCACATCATCTTGTTGCGGGACAATTTCGGA Isolepis_crassiuscula_JP TGAACATGTAACATAATGCTACCG?GGG??AGTTCCATCTCCTCGGCCCTGCTGGCCCCAGCTTATTGGCTGGGTGTCGGAAAACGGCACGGGATGTTGCCAAGGAACACTGATTTGCTGAGGCAGACGACAATACGCTCGTACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCTGTCAA????????????CCTTTTTACAGAGGATTGACTTGACGCGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCTGAAGTGAATGGTCGTCGGACGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCCGCCATTTCGACGTATGGCCTCTATA???CCCCAGTCGAAACGAGGGGATTGTTGTCACAGCATCTTGTTGTGGGACAATTTCGGA Isolepis_crassiuscula_NZ TGAACATGTAACATAATGCTACCG?GGG??AGTTCCATCTCCTCGGCCCTGCTGGCCCCAGCTTATTGGCTGGGTGTCGGAAAACGGCACGGGATGTTGCCAAGGAACACTGATTTGCTGAGGCAGACGACAATACGCTCGTACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCTGTCAA????????????CCTTTTTACAGAGGATTGACTTGACGCGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCTGAAGTGAATGGTCGTCGGACGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTGCCATTTCGACGTATGGCCTCTATA???CCCCAGTCGAAACGAGGGGATTGTTGTCACAGCATCTTGTTGTGGGACAATTTCGGA Isolepis_diabolica ?????????????????????????????????????????????????TGCCGGCCCCAGCCCTTTGGTTGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAAGCAGACGACATTGCG?TTGTGCTGTTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACACTCGGTCAA????????????CCTTGTTACAGAGGAAAGACTTGATGTGGACAATGGACCTCCGAGCCAGAAA????TGGCACGGTGGGCTGAAGTTAATGGTCGTCGGATGGTAACATGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCATTGCTGCCATTCCGACGTATGGCCTCTATA???CCCCAGTCGTAACGAGGGGATTGTTGTTGCAGCAGCATGTTGTTTCACAATTTCGGA Isolepis_digitata CGAACACGTAACGTAATGCTGCCG?CGG??AGTTCCATCTCCTCGGCCCTGCCGGCCCCGGCCTATTGGCCGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGATGACAATACGGTCGTGCTGCTGACGCCGGCTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCGTTCAA????????????CCTTTTTACAGAGGATTGACTTGACGCGGACAATGGACCTCCGAACCAGTGA????TGGCACGGTGGGCTGAAGTGAACGGTCGTCGGACGGTAACGGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCGATCCCGGCTGCCATTTCGACGTACGGCCTCTACA???CCCCGGTCGAAACGAGGGGATTGTCGTCACGGCATCTCGTCGTGCGGCAATTTCGGA Isolepis_fluitans_SP TGAACATGTAACATAATGCTGTCG?GGG??AGTTCCATCTCCTCGGCCCTGCCGACCCCAGCCTATTGGCTGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTAATTTGCGGAGGCAGACGACAATACGCTCGTACTGTTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGTGTTAGAAGCCCATCAACGCTCGGTCAG????????????CCTCTTTACAAAGGACTGACTTGACGTGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCTGAAGTGAATGGTCGTCGGATGGTAATAGGATCGGCAAGTGGTGGGCTA??CTGCGCACGCCAATCCTAGCTGCCATTTCGACGTATGGCCTCTATATAACCC?AGTCGTAACGAGGGGATTGTTGTCACAGCATCTTGTTGTGTGACAATTTCGGA Isolepis_lenticularis_1 TGAACACGTAACATAATGCTACCG?GGG??AGTTCCATCTCCCCGGTCCTGCCGGCCCCAGCTTATTGGCTGGGTGTCGGAAAACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGACGACAATGCGCTCGTACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCTGTCAA????????????CCTTTTTACAGAGGATTGACTTGATGTGGACAATGGACCTCCGAGCCAGTAA????TGGCGCGGTGGGCTGAAGTGAACGGTCGTCGGATGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTGCCATTTCGACGTATGGCCTCTATATA?CCCCAGTCGAAATGAGGGGATTGTTGTCACAGCATCTTGTTGTGGGACAATTTCGGA Isolepis_lenticularis_2 TGAACACGTAACATAATGCTACCG?GGG??AGTTCCATCTCCCCGGCCCTGCCGGCCCCAGCTTATTGGCTGGGTGTCGGAAAACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGACGACAATGCGCTCGTACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCTGTCAA????????????CCTTTTTACAGAGGATTGACTTGATGTGGACAATGGACCTCCGAGCCAGTAA????TGGCGCGGTGGGCTGAAGTGAACGGTCGTCGGATGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTGCCATTTCGACGTATGGCCTCTATATA?CCCCAGTCGAAATGAGGGGATTGTTGTCACAGCATCTTGTTGTGGGACAATTTCGGA Isolepis_fluitans_KN ?????????????????????????????????????????????????TGCCGACCGCAGCCTATTGGTTGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTAATTTGCGTAGGCAGACGACAATATGCTCGTACTGTTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGTGTTAGAAGCCCATCAACGCTCAGTCAA????????????CCTTTTTACAAAGGACTGACTTGACGTGGACAATGGACCTCCGAGCTAGTAA????TGGCACGGTGGGCTGAAGTGAATGGTCGTCGGATGGTAATAGGATCGGCAAGTGGTGGGCTA??CTGCGCATGCCAATCCTAGCTGCCATTTCGACGTATGGCCTCTATATAACCC?AGTCGTAACGAGGGGATTGTTGTCACAGCATCTTGTTGTGTGACAATTTCGGA Isolepis_fluitans_ET TGAACATGTAACATAATGCTGTCG?GG??GAGTTCCATCTCCTCGGCCCTGCCGACCCTAGCCTATTGGTTGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTAATTTGCGGAGGCAGACGACAATACGCTCGTACTGTTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGTGTTAGAAGCCCATCAACGCTCAGTCAA????????????CCTTTTTACAGAGGACTGACTTGACGTGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCTGAAGTGAATGGTCGTCGGATGGTAATAGGATCGGCAAGTGGTGGGCTA??CTGCGCATGCCAATCCTAGCTGCCATTTCGATGTATGGCCTCTATA?A?CCC?AGTCGTAACGAGGGGATTGTTGTCACAGCATCTTGTTGTGTGACAATTTCGGA Isolepis_gaudichaudiana TGAACACGTAACATAATGCTGCCG?GGG??AGTTCCATCTCCTCGGCCCTGCCGGCCCCAGCTTATTGGCCGGGTGTCGGAAAACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGACGACAATACGCTCGTACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCTGTCAA????????????CCTTTTTACAGAGGATTGACTTGACGCGGACAATGGACCTCCGAGCCAGTAA????CGGCACGGTGGGCTGAAGTGAATGGTCGTCGGATGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTGCCATTTCGACGTATGGCCTCTATA???CCCCAGTCGAAACGAGGGGATTGTTGTCACAGCATCTTGTTGTGGGACAATTTCGGA Isolepis_graminoides ?????????????????????????????????????????????????TGCCGACCCCAGCCTATTGGTTGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTAATTTGCGGAGGCAGACGACAATACGCTCGTACTGTTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGTGTTAGAAGCCCATCAACGCTCAGTCAA????????????CCTTTTTACAAAGGACTGACTTGACGTGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCTGAAGTGAATGGTCGTCGGATGGTAATAGGATCGGCAAGTGGTGGGCTA??CTGCGCATGCCAATCCTAGTTGCCATTTTGACGTATGGCCTCTATATAACCC?AGTCGTAACGAGGGGATTGTTGTCACAGCATCTTGTTGTGTGACAATTTCGGA Isolepis_habra TGAACACGTAACATAATGCTACCG?GGG??AGTTTCGTCTCCCCGGCCCTGCCGGCCCCAGCTTATTGGCCGGGTGTCGGAAAACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGACGACAATACGCTCGTACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCTGTCAA????????????CCTTTTTACAGAGGATTGACTTGACGCGGACAGTGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCTGAAGTGAATGGTCGTCGGATGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTGCCATTTCGACGTATGGCCTCCATA???CCCCAGTCGAAACGAGGGGATTGTTGTCACAGCATCTTGTTGCGGGACAATTTCGGA Isolepis_hystrix TGAACACGTAACATAGTGCTACCG?GGG??AGT?CCATCTCCTCGGCCCTGCCGGCCCCAGCCTGTTGGCTGGGAGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGACGACAGTATGCTCGTAATGCCGAAGCCAACTAAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCGGTCAA????????????CCTTTTTACAGAGGAAAGACTTGATGTGGAAAATGGACCTCCGAGTCATTAG????TGGCACGGTGGGCTGAAGTGCATGGTCGTCGGATTGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCGATCCTGATTGCCATTTTGACGTATGGCCTTTATA???CCCCAGTTGAAACGAGGGGATTGTTGTTGCATCATCTAGTTGCTTGACAATTTCGGA Isolepis_inundata TGAACACGTAACATAATGCTGCCG?GGG??AGTTCCATCTCCTCGGCCCTGCCGGCCCCGGCTTATTGGCTGGGTGTCGGAAAACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGACGACAATACGCTCGTACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCTGTCAA????????????CCTTTTTACAGAGGATTGACTTGACGCGGACAATGGACCTCCGAGCCGGTAA????TGGCACGGTGGGCTGAAGTGAATGGTCGTCGGATGGTAACGGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTGCCATTTCGACGTATGGCCTCTATA???CCCCAGTCGAAACGAGGGGATTGTTGTCACAGCATCTTGTTGTGGGACAATTTCGGA Isolepis_inyangensis ?????????????????????????????????????????????????TGCCGACCCCAGCCTATTGGCTGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTAATTTGCGGAGGCAGACGGCAATACGCTCGTACTGTTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGTGTTAGAAGCCCATCAACGCTCAGTCAA????????????CCTTTTTACAGAGGACTGACTTGACGTGGACAATGGACCTCCGAGCTAGTAA????TGGCACGGTGGGCTGAAGTGAATGGTCGTCGAATGGTAATAGGATCGGCAAGTGGTGGGCTA??CTGCGCATGCCAATCCTAGCTGCCATTTCGACGTATGGCCTCTATA???CCCCAGTCGTAACGAGGGGATTGTTGTCACAGCATCTTGTTGTGTGACAATTTCGGA Isolepis_keniaensis TGAACATGTAACATAATGCTACCG?GGG??AGATGGCTCTCCCCGGCCCTGCCGGCCCCAGCCCATTGGGTGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAAGCAGATGACATTGCG?TTGTGCTGTTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACACTCGGTCAA????????????CCTTGTTACAGAGGAAGGACTTGATGTGGACAATGGACCTCCGAGCCAGCAA????TGGCACGGTGGGCTGAAGTTAATGGTCGTCGGATGGTAACATGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCATTGCTACCATTCCGACGTATGGCCTCTATA???CCCCAGTCGTAACGAGGGGATTGTTGTTGCAGCAGCATGTTGTTTCACAATTTCGGA Isolepis_levynsiana TGAACATGTAACGTAATGCTACCG?GGG??AGAGCCATCTCCTCGGCCCTGCCGGCCCCAGCCTGTTGGCTGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGACGACATTACG?TTGTACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCAAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACACTCGGTCAG????????????CCTTGTTAAAGAGGACGGACTCGATGTGGACAATGGTCCTCCGATCCAGTAA????TGGAACGGTGGGCTGAAGTTAATGGTCGTCGGATGGTGACATGATCGGCGAGTGGTGGGCTA??CTGCGCATGTCGATCACAGCTACCATTTCGATGTACGGCCAATTCA???CCCCAGTCAAAACGAGGGGATTGTTGATTCAGCTTCTTGTTGTTTCACAATTTCGGA Isolepis_ludwigii_ ??????????????????????????????????????????????????????????CAGCCTATTGGCTGGTTGTCGGAATACGGCGCGGGATGTCGCCGAGGAACACTAATTTGCGGAGGCAGACGACAATACGCTCGTACTGTTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGTGTTAGAAGCCCATCAACGCTCGGTCAA????????????CCTTTTTACAGAGGACTGACTTGACGCGGACAATGGACCTCCGAGCTAGTAA????TGGCACGGAGGGCTGAAGTGAATGGTCGTCGGATGGTAATAGGATCGGCAAGTGGTGGGCTA??CTGCGCATGCCGATCCTAGCTACCATTTCGACGTATGGCCTCTATA???CCCCAGTCGTAAAGAGGGGATTGTTGTCACAGCATCTTGTTGTGTGACAATTTCGGA Isolepis_meruensis TGAAGATGTAACGTATTGCTACCG?GGG??AGAGCCATCTCCTCGGCCCTGCCGACCCCAGCCAATTGGTTGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGGTGACAATATG?TTGCACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACACTCGGTCAA????????????CCTTTATTTAGAGGACGGACTTGATGTGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCTGAAGTTAATGGTCGTCGGATGGTGACTTGATCGACGAGTTGTGGGCTA??CTGCGCATGTCGATCAAGGCTACCATTTCGATGTATGGCCTCTATA???CCCCAGTCGTAATGAGGGGATTGTTGTTGCAGCATCTTGTTGTTTCACAATTTCGGA Isolepis_montivaga TGAACACGTAACATAATGCTACCG?GGG??AGTTCCATCTCCCCGGCCCTGCCGGCCCCAGCTTATTGGCCGGGTGTCGGAAAACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGACGACAATACGCTCGTACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCTGTCAA????????????CCTTCTTACAGAGGATTGACTTGACGCGGACAATGGACCTCCGAGCCGGTAA????TGGCACGGTGGGCTGAAGTGAATGGTCGTCGGATGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTGCCATTTCGACGTATGGCCTCTATA???CCCCAGTCGAAACGAGGGGACTGTTGTCACAGCATCTTGTTGTGGGACAATTTCGGA Isolepis_pellocolea TGAACATGTAACATAACGCTACCG?GGG??AGTTCCATCTCCTCGGCCCTGCCGGCCCCGGCTTATTGGCCGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGACGACAATACGCTCGTACTGCTGACGCCAACATAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCTTGACG????????????CCTTTTCACATAGGATTGACTTGACGCGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCTGAAGTGAAGGGTCGTCGGATGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTGCCATTTCGACGTACGGCCTCTATA???CCCCAGTCGAAACGAGGGGATTGTTGTCACAGCATCTTGTTGCGGGACAATTTCGGA Isolepis_platycarpa TGAACATGTAACGTAATGCTACCG?GGG??AGAGCCATCTCCTCGGCCCTGCCGACCCCAGCCAATTGGTTGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGGTGACAATATG?TTGCACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACACTCGGTCAA????????????CCTTTATTTAGAGGACGGACTTGATGTGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCTGAAGTTAATGGTCGTCGGATGGTGACTTGATCGACGAGTTGTGGGCTA??CTGCGCATGTCGATCAAGGCCACCATTTCGATGTATGGCCTCTATA???CCCCAGTCGTAACGAGGGGATTGTTGTTGCAGCATCTTGTTGTTTCACAATTTCGGA Isolepis_pottsii CGAACACGTAACATAATGCTGCCG?GGG??AGTTCCGTCTCCTCGGCCCTGCCGRCCCCGGCTTATTGGCCGGGTGTCGGAAAACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCCGAGGCAGACGACA?TACGCTCGTTCTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCCGTCAA????????????CCTTTTTACAGAGGATTGACCTGACGCGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCTGAAGTGAATGGTCGTCGGATGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTGCCATTTCGACGTGCGGCCTCTGTA???CCCCAGTCGAAACGAGGGGATTGTTGTCACGGCATCTTGTTGTGGGACAATTTCGGA Isolepis_producta TGAACATGTAACATAATGCTACCG?GGG??AGTTCCATCTCCTCGGCCCTGCCGGCCCCAGCTTATTGGCTGGGTGTCGGAAAACGGCACGGGATGTTGCCAAGGAACACTGATTTGCTGAGGCAGACGACAATACGCTCGTACTGCTGACGCCAACTTAACATTATGACTCCCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCTGTCAA????????????CCTTTTTACAGAGGATTGACTTGACGCGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCTGAAGTGCATGGTCGTCGGACGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTGCCATTTCGACGTATGGCCTCTATA???CCCCAGTCGAAACGAGGGGATTGTTGTCACAGCATCTTGTTGTGGGACAATTTCGGA Isolepis_prolifera_NZ TGAACACGTAACATAATGCTACCG?GGG??AGTTCCATCTCCTCGGCCCTGCCGGCCCCAGCTTATTGGCTGGGCGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCGGGCGACAATACGCTCGTACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCCGTCAA????????????CCTTTTTACAGAGGATTGACTCGACGCGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGCGGGCTGAAGTGAATGGTCGTCGGATGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTTCCATTTCGACGTATGGCCTCTGTA???CCCCAGTCGAAACGAGGGGATTGTTGTCACAGCATCTTGTTGTGGGGCAATTTCGGA Isolepis_prolifera_SA TGAACACGTAACATAATGCTACCG?GGG??AGTTCCATCTCCTCGGCCCTGCCGGCCCCAGCTTATTGGCTGGGCGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGGCGACAATACGCTCGTACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCCGTCAA????????????CCTTTTGACAGAGGATTGACTCGACGCGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGCGGGCTGAAGTGAATGGTCGTCGGATGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTTCCATTTCGACGTATGGCCTCTGTA???CCCCAGTCGAAACGAGGGGATTGTTGTCACAGCATCTTGTTGTGGGGCAATTTCGGA Isolepis_reticularis TGAACACGTAACATAATGCTGCCG?GGG??AGTTCCATCTCCTCGGCCCTGCCGGCCCCAGCTTATTGGCTGGGTGTCGGAAAACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGACGACAATACGCTCGTACTGCTGACGCCGACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCT?TCAA????????????CCCTTTTACAGAGGATTGACTTGACGCGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCTGAAGTGAATGGTCGTCGGATGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTGCCATTTCGACGTATGGCCTCTATA???CCCCAGTCGAAACGAGGGGATTGTCGTCACAGCATCTTGTTGTGGGACGATTTCGGA Isolepis_rubicunda ??????????????????????????????????????????????????GCCGACCCCGGCCTATTGGCGGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCGGAGGCAGACGACAACACGCTCGTACTGTTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCTGAGGGCACGCCTGCCTGGGTGTTAGAAGCCCATCAACGCTCGGTCAA????????????CCTTTTTACATAGGACTGACTTGACGCGGACAATGGACCTCCGAGCCAGTAA????CGGCACGGCGGGCTGAAGTGAATGGTCGTCAGATGGTTAGAGGATCGGCAAGTGGTGGGCTA??CTGCGCATGCCAATCCCAGCTGCCATTTCGACGTATGGCCTGTATA???CCCCAGTCGTAACGAGGGGATTGTTTTCACAGCATCTTGTTGTGTGACAATTTCGGA Isolepis_sepulcralis TGAACATGTAACATAGTGCTACCG?GG??GAGTTCCATCTCCTCGGCCCTGCCGGCCCCAGTCTGTTGGTTGGGAGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGACGACATTACGCTCGTATTGCTGAAGCCAACTAAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCGGTCAA????????????CCTTTTTACAGAGGACAGATTTGACGTGGAAAATGGACCTCCGAGTCATTAG????TGGCACGGTGGGCTGAAGTGCATGGTCGTCGGATGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCGATCCTAATTTCCATTTTGACGTATGGCCTCTATA???CCCCAGTTGAAACGAGGGGATTGTTGTTGCAGCATCTTGTTGTTTGACAATTTCGGA Isolepis_setacea_KN TGAACATGTAACATAATGCTACCG?GG??GAGAGCCATCTCCCCGGCCCTGCCGGCCCCAGCTCATTGGTTGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGACGACATTGCG?TTGTGCTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACACTCGGTTAA????????????CCTTGTTACAGAGGAAGGACTTGATGTGGACAATGGACCTCCGAGCCAGCAA????TGGCACGGTGGGCTGAAGTTAATGGTCGTCGGATGGTAACATGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCATTGCTACCATTCCGACGTATGGCCTCGATA???CCCCAGTCGTAACGAGGGGATTGTTGTTGCAGCAGCATGTTGTTTCACAATTTCAGA Isolepis_setacea_NP TGAACATGTAACATAATGCTACCG?GG??GAGAGCCATCTCCCCGGCCCTGCCGGCCCCAGCTCATTGGTTGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGACGACATTGTG?TTGTGCTGTTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACACTCGGTCAA????????????CCTTGTTACAGAGGAAGGACTTGATGTGGACAATGGACCTCCGAGCCAGCAA????TGGCACGGTGGGCTGAAGTTAATGGTCGTCGAATGGTAACATGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCATTGCTACCATTTCGCCGTATGGCCTCTATA???CCCCAGTCGTAACGAGGGGATTGTTGTTGCAGCATCTTGTTGTTTCACAATTTCGGA Isolepis_striata TGAACATGTAATATAATGCTACCG?GG??GAGTTC?ATCTCCTCGGCCCTGCCGACCCCAGCCTAATGACTGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCGAAGGCAGACGACAATACGCTCGTACTGTTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGTGTTAGAAGCCCATCAACGCTCGCTCAA????????????CCTTTTTATAGAGGACTGACGTGACGTGGACAATGGACCTCCGAGCCAGTATGTATTGGCACGGTGGGCTGAAGTGAATGGCCGTCAGATGGTAACAGGATCGGCAAGTGGTGGGCTA??CTGCGCATGCCAAT??T?GCTGCCATTTCGACGTATGGCCTCTATA???CCCCAGTCGTAACGAGGGAATTGTTGTCACAGCATCTTGTTGTGTGACAATTTCGGA Isolepis_subtilissima TGAACACGTAACATAATGCTACCG?GG??GAGTTCCGTCTCCCCGGCCCTGCCGGCCCCAGCTTATTGGCCGGGTGTCGGAAAACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGACGACAATACGCTCGTACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCTGTCAA????????????CCTTTTTACAGAGGATTGACTTGACGCGGACAGTGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCTGAAGTGAATGGTCGTCGGATGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTGCCATTTCGACGTATGGCCTCCATA???CCCCAGTCGAAACGAGGGGATTGTTGTCACAGCATCTTGTTGCGGGACAATTTCGGA Isolepis_sulcata TGAACACGTAACATAATGCTACCG?GG??GAGTTCCGTCTCCTCGGCCCTGCCGGCCCCAGCTTATTGGCTGGGCGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGGCGACAATACGCTCGTACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCCGTCAA????????????CCTTTTTACAGAGGATTGACTCGACGCGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGCGGGCTGAAGTGAATGGTCGTCGGATGTTAACGGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTTCCATTTCGACGTATGGCCTCTGTA???CCCCAGTCGAAACGAGGGGATTGTTGTCACAGCATCTTGTTGTGGGGCAATTTCGGA Isolepis_varians TGAACACGTAACATAATGCTGCCG?GG??GAGTTCCGTCTCCTCGGCCCTGCCGGCCCCAGCTTATTGGCCGGGTGTCGGAAAACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCGGACGACAATACGCTCGTTCTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCCGTCAA????????????CCTTTTTACAGAGGACTGACTCGACGCGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCTGAAGTGAATGGTCGTCGGATGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTGCCATTTCGACGCATGGCCTCTGTA???CCCCAGTCGAAACGAGGGGATTGTCGTCACAGCATCTTGTTGCGGGACAATTTCGGA Isolepis_venustula TGAACATGTAACGTAATGCTACCG?GG??GAGAGCCATCTCCTCGGCCCTGCCGACCCCAGCCAATTGGTTGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGGTGACAATATG?TTGCACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACACTCGGTCAA????????????CCTTTCTTTAGAGGACGGACTTGATGTGGACAATGGACCTCCGAGCCAGTGA????TGGCACGGTGGGCTGAAGTTAATGGTCGTCGGATGGTGACTTGATCGACGAGTTGTGGGCTA??CTGCGCATGTCGATCAAGGCTACCATTTCGATGTATGGCCTCTATA???CCCCAGTCGTAACGAGGGGATTGTTGTTGCAGCATCTTGTTGTTTCACAATTTCGGA Isolepis_verruculosa TGAACATGTAACGTAATGCTACCG?GG??GAGAGCCATCTCCTCGGCCCTGCCGACCCCAGCCAATTGGTTGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGGTGACAATATG?TTGCAATGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACACTCGGTCAA????????????CCTTTTTTTAGAGGACAGACTTGATGTGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGCGGGCTGAAGTTAATGGTCGTCGGATGGTGACTTGATCGACGAGTTGTGGGCTA??CTGCGCATGTCGATGAAGGCTACCATTTCGATGTATGGCCTCTATA???CCCCAGTCGTAACGAGGGGATTGTTGTTGCAGCATCTTGTTGTTTCACAATTTCGGA Isolepis_wakefieldiana TGAACACGTAACATAATGCTGCCG?GG??GAGTTCCATCTCCTCGGCCCTGCCGGCCCCGGCTTATTGGCTGGGTGTCGGAAAACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGACGACAATACGCTCGTACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCTGTCAA????????????CCTTTCTACAGAGGATTGACTTGACGCGGACAATGGACCTCCGAGCCGGCAA????TGGCACGGCGGGCTGAAGTGAATGGTCGTCGGATGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTGCCATTTCGACGTATGGCCTCTATA???CCCCAGTCGAAACGAGGGGATTGTTGTCACGGCATCTTGTTGTGGGACAATTTCGGA ; END; begin paup; include 1; export format = fasta file = Isolepis_ITS_RAxML.txt; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 583; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 583; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 583; END; BEGIN TREES; Title 'Trees from "isolepis_its_raxml.tre"'; LINK Taxa = Taxa; TRANSLATE [0] 1 Dracoscirpoides_falsa, [1] 45 Hellmuthia_membranacea, [2] 44 Ficinia_pinguior_, [3] 32 Isolepis_aucklandica, [4] 42 Isolepis_bicolor, [5] 16 Isolepis_cernua_FA, [6] 23 Isolepis_costata, [7] 27 Isolepis_crassiuscula_JP, [8] 26 Isolepis_crassiuscula_NZ, [9] 12 Isolepis_diabolica, [10] 2 Isolepis_digitata, [11] 7 Isolepis_fluitans_SP, [12] 39 Isolepis_lenticularis_1, [13] 38 Isolepis_lenticularis_2, [14] 6 Isolepis_fluitans_KN, [15] 4 Isolepis_fluitans_ET, [16] 33 Isolepis_gaudichaudiana, [17] 5 Isolepis_graminoides, [18] 35 Isolepis_habra, [19] 21 Isolepis_hystrix, [20] 28 Isolepis_inundata, [21] 3 Isolepis_inyangensis, [22] 13 Isolepis_keniaensis, [23] 15 Isolepis_levynsiana, [24] 8 Isolepis_ludwigii_, [25] 17 Isolepis_meruensis, [26] 37 Isolepis_montivaga, [27] 24 Isolepis_pellocolea, [28] 18 Isolepis_platycarpa, [29] 30 Isolepis_pottsii, [30] 25 Isolepis_producta, [31] 43 Isolepis_prolifera_NZ, [32] 41 Isolepis_prolifera_SA, [33] 34 Isolepis_reticularis, [34] 9 Isolepis_rubicunda, [35] 22 Isolepis_sepulcralis, [36] 14 Isolepis_setacea_KN, [37] 11 Isolepis_setacea_NP, [38] 10 Isolepis_striata, [39] 36 Isolepis_subtilissima, [40] 40 Isolepis_sulcata, [41] 31 Isolepis_varians, [42] 19 Isolepis_venustula, [43] 20 Isolepis_verruculosa, [44] 29 Isolepis_wakefieldiana; TREE 'PHYLIP 1+' = (1:0.157545,45:0.186348,(44:0.064627,(2:0.076983,((((8:0.027972,(7:0.011832,(3:0.009958,(4:0.005958,(5:0.006511,6:0.013202)55:0.003264)33:0.002911)27:0.002967)41:0.000001)80:0.010937,(9:0.04693,10:0.032754)54:0.002645)99:0.023022,(((11:0.009739,(14:0.011997,(12:0.013528,13:0.012392)100:0.012644)96:0.009712)100:0.031652,(15:0.069907,(20:0.012126,(19:0.005742,(16:0.00589,(17:0.008891,18:0.002936)21:0.000001)78:0.002914)72:0.000001)100:0.045319)80:0.014383)100:0.040333,(21:0.042387,22:0.0114)100:0.057264)75:0.016689)71:0.011611,((23:0.02347,24:0.042339)41:0.005178,(((25:0.006074,(26:0.000001,27:0.002961)74:0.002895)97:0.012061,(((28:0.002977,29:0.012196)65:0.006033,(34:0.012093,(33:0.002994,(32:0.005982,(30:0.022296,31:0.018736)42:0.012148)3:0.000001)5:0.002985)3:0.000001)7:0.002976,((37:0.009229,(35:0.006015,36:0.000001)97:0.01229)26:0.002837,(38:0.000001,39:0.002949)100:0.018146)27:0.002983)12:0.000001)35:0.002986,(43:0.002997,(40:0.009068,(41:0.003004,42:0.000001)29:0.000001)19:0.000001)95:0.024419)7:0.000001)33:0.0125)57:0.017061)96:0.049947)100:0.136895)[% ] [%unrooted = on ]; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1434598676309; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 8733858274121020305; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 7220363242867619015; mqVersion 303; checksumv 0 3 1926218232 null getNumChars 583 numChars 583 getNumTaxa 45 numTaxa 45 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 503914.0 sumSquares 4.6116860184274268E18 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1920 980; setLocation -11 -11; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #8733858274121020305 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1119.1434598644343.2779196160879217500; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 908; setLocation -11 -11; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #7220363242867619015 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 908; setLocation -11 -11; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;