#NEXUS [written Tue Jun 23 11:06:50 CST 2015 by Mesquite version 3.03 (build 702) at Yu-2015/192.168.1.163] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=45; TAXLABELS Dracoscirpoides_falsa Hellmuthia_membranacea Ficinia_pinguior_ Isolepis_aucklandica Isolepis_bicolor Isolepis_cernua_FA Isolepis_costata Isolepis_crassiuscula_JP Isolepis_crassiuscula_NZ Isolepis_diabolica Isolepis_digitata Isolepis_fluitans_SP Isolepis_lenticularis_1 Isolepis_lenticularis_2 Isolepis_fluitans_KN Isolepis_fluitans_ET Isolepis_gaudichaudiana Isolepis_graminoides Isolepis_habra Isolepis_hystrix Isolepis_inundata Isolepis_inyangensis Isolepis_keniaensis Isolepis_levynsiana Isolepis_ludwigii_ Isolepis_meruensis Isolepis_montivaga Isolepis_pellocolea Isolepis_platycarpa Isolepis_pottsii Isolepis_producta Isolepis_prolifera_NZ Isolepis_prolifera_SA Isolepis_reticularis Isolepis_rubicunda Isolepis_sepulcralis Isolepis_setacea_KN Isolepis_setacea_NP Isolepis_striata Isolepis_subtilissima Isolepis_sulcata Isolepis_varians Isolepis_venustula Isolepis_verruculosa Isolepis_wakefieldiana ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=583; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX Dracoscirpoides_falsa TGAACACGTCACATAAAGCTACCGAGGAGGAGTTTTCT?CCTCGGCCCCACCGACACCCGGCCCTT?GGCCTGGTGTCGGAATACGGCGCGGAATG?CGCCAAGGAACACTGATTTGCTGAGGCAGACGGCTATATGCTAGTGCTGCTGAGGCCAACGAAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGACCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCGGTCA?CCTCTCCATAT?ACTTGTGGTAGGGGACTGGCCAGATGCGGACATTGGCCCTCCGAGCCATAAA?????GGTGCGGTGGGCTGAAGTGCACGGTCGTCGGATGGTGCCGGGATCGGCGAGTGGTGGGCTATACTGCGCATGCCAACCCCGGCCGCCATGTTGACAGATGACCTTTTTCGACCCCC?????TAACAAGGAGTTTGTCGTTACAGCACTTTGTTGTGCGGCATCTTCGGA Hellmuthia_membranacea TGAACATGTAACATAACGCTGCCG?GGG??AGAGCTTTCTCCTCGGCCCCACCGGCCCTGGTTCTTTGGCCGGGTGCCGGAATACGGCGCGAAATGTCGCCAAGGAACACTGACTTGCTGAGGCGGACGGCAGCATGCTCGTGCCGCTGAGGCCAACAAAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCAATAAAAAACGTACCGAAATGCGATACGTGGTGTGAATTGCAAAATCCCGTGAACCATCAAGTCTTTGAACGCAAGTTGCGCCCAAGGGACCCTCCCAAGGGCACGCCTGCCTGGGCGTTAAAAGCCAATCAACGCTCCACATA????????????GCTTGTGGTTGGGGACCGGCCAAATGCGAACAATGGCCCTCCAATCCATGAA????TGGCACGGTGGGCTGAAGTGCACGGTCGTCGTATGGTGTTGGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCCGCCATGTCGGCATATGGCCTTTTTTGA?CCCC?????TAACAAGGAAACTGTCGTCGCAGCATCCTGTTGTGCGGCATCTTCGGA Ficinia_pinguior_ ????CATGTAACATAATGCTACCG?GGG??AGTACCATCTCCTCGGCCCTGCCGGCCCCGGCCTATTGGTCGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGAATTGCTGAGGCGGACGACAATACGCTCGTACTGCTGATGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACACTCAGTCGACCCCTGCACACACCGTGTGATAGAGGACTGACCTGATGTGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCCGAAGTTAATGGTCGTCGCATGGTAACGGGATCGGCGAGTGGTGGGCTA??CTGCGCAAGCCAATCCCGGTTGCCATGTCGACATATTGCCTCTTTTGAACCCC?????AAATGAGGAGATTGTCGTCGCAGCATCTAGTTGTGCGGCAATTTCGGA Isolepis_aucklandica TGAACACGTAACATAATGCTGCCG?GGG??AGTTCCATCTCCTCGGCCCTGCCGGCCCCAGCTTATTGGCCGGGTGTCGGAAAACGGTGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGACGACAATACGCTCGTACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCTGTCAA????????????CCTTTTTACAGAGGATTGACTTGACGCGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCTGAAGTGAATGGTCGTCGGATGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTGCCATTTCGACGTATGGCCTCTATA???CCCCAGTCGAAACGAGGGGATTGTTGTCACAGCATCTTGTTGCGGGACAATTTCGGA Isolepis_bicolor TGAACACGTAACATAATGCTACCG?GGG??AGTTCCATCTCCTCGGCCCTGCCGGCCCCAGCTTATTGGCTGGGCGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGGCGACAATACGCTCGTACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCCGTCAA????????????CCTTTTTACAGAGGATTGACTCGACGCGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGCGGGCTGAAGTGAATGGTCGTCGGATGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTTCCATTTCGACGTATGGCCTCTGTA???CCCCAGTCGAAACGAGGGGATTGTTGTCACAGCATCTTGTTGTGGGGCAATTTCGGA Isolepis_cernua_FA TGAACATGTAACGTAATGCTACCG?GGG??AGAGCCATCTCCTCGGCCCTGCCGACCCCAGCCAATTGGTTGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGGTGACAATATG?TTGCACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACACTCGGTCAA????????????CCTTTATTTAGAGGACGGACTTGATGTGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCTGAAGTTAATGGTCGTCGGATGGTGACTTGATCGACGAGTTGTGGGCTG??CTGCGCATGTCGATCAAGGCTACCATTTCGATGTATGGCCTCCATA???CCCCAGTCGTAACGAGGGGATTGTTGTTGCAGCATCTTGTTGTTTCACAATTTCGGA Isolepis_costata TGAACACGTAACATAACGCTGCCG?GGG??AGTTCCATCTCCTCGGCCCTGCCGGCCCCAGATTATTGGCTGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGCCGACAATACGCTCGTACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCTGTCAA????????????CCTTTTTA???????TTGACTTGACGTGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCTGAAGTGAATGGTCGTCGGATGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTGCCATTTGGACGTATGGCCTCTACA???CCCCAGTCGAAACGAGGGGATTGTTGTCACATCATCTTGTTGCGGGACAATTTCGGA Isolepis_crassiuscula_JP TGAACATGTAACATAATGCTACCG?GGG??AGTTCCATCTCCTCGGCCCTGCTGGCCCCAGCTTATTGGCTGGGTGTCGGAAAACGGCACGGGATGTTGCCAAGGAACACTGATTTGCTGAGGCAGACGACAATACGCTCGTACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCTGTCAA????????????CCTTTTTACAGAGGATTGACTTGACGCGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCTGAAGTGAATGGTCGTCGGACGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCCGCCATTTCGACGTATGGCCTCTATA???CCCCAGTCGAAACGAGGGGATTGTTGTCACAGCATCTTGTTGTGGGACAATTTCGGA Isolepis_crassiuscula_NZ TGAACATGTAACATAATGCTACCG?GGG??AGTTCCATCTCCTCGGCCCTGCTGGCCCCAGCTTATTGGCTGGGTGTCGGAAAACGGCACGGGATGTTGCCAAGGAACACTGATTTGCTGAGGCAGACGACAATACGCTCGTACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCTGTCAA????????????CCTTTTTACAGAGGATTGACTTGACGCGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCTGAAGTGAATGGTCGTCGGACGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTGCCATTTCGACGTATGGCCTCTATA???CCCCAGTCGAAACGAGGGGATTGTTGTCACAGCATCTTGTTGTGGGACAATTTCGGA Isolepis_diabolica ?????????????????????????????????????????????????TGCCGGCCCCAGCCCTTTGGTTGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAAGCAGACGACATTGCG?TTGTGCTGTTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACACTCGGTCAA????????????CCTTGTTACAGAGGAAAGACTTGATGTGGACAATGGACCTCCGAGCCAGAAA????TGGCACGGTGGGCTGAAGTTAATGGTCGTCGGATGGTAACATGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCATTGCTGCCATTCCGACGTATGGCCTCTATA???CCCCAGTCGTAACGAGGGGATTGTTGTTGCAGCAGCATGTTGTTTCACAATTTCGGA Isolepis_digitata CGAACACGTAACGTAATGCTGCCG?CGG??AGTTCCATCTCCTCGGCCCTGCCGGCCCCGGCCTATTGGCCGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGATGACAATACGGTCGTGCTGCTGACGCCGGCTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCGTTCAA????????????CCTTTTTACAGAGGATTGACTTGACGCGGACAATGGACCTCCGAACCAGTGA????TGGCACGGTGGGCTGAAGTGAACGGTCGTCGGACGGTAACGGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCGATCCCGGCTGCCATTTCGACGTACGGCCTCTACA???CCCCGGTCGAAACGAGGGGATTGTCGTCACGGCATCTCGTCGTGCGGCAATTTCGGA Isolepis_fluitans_SP TGAACATGTAACATAATGCTGTCG?GGG??AGTTCCATCTCCTCGGCCCTGCCGACCCCAGCCTATTGGCTGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTAATTTGCGGAGGCAGACGACAATACGCTCGTACTGTTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGTGTTAGAAGCCCATCAACGCTCGGTCAG????????????CCTCTTTACAAAGGACTGACTTGACGTGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCTGAAGTGAATGGTCGTCGGATGGTAATAGGATCGGCAAGTGGTGGGCTA??CTGCGCACGCCAATCCTAGCTGCCATTTCGACGTATGGCCTCTATATAACCC?AGTCGTAACGAGGGGATTGTTGTCACAGCATCTTGTTGTGTGACAATTTCGGA Isolepis_lenticularis_1 TGAACACGTAACATAATGCTACCG?GGG??AGTTCCATCTCCCCGGTCCTGCCGGCCCCAGCTTATTGGCTGGGTGTCGGAAAACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGACGACAATGCGCTCGTACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCTGTCAA????????????CCTTTTTACAGAGGATTGACTTGATGTGGACAATGGACCTCCGAGCCAGTAA????TGGCGCGGTGGGCTGAAGTGAACGGTCGTCGGATGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTGCCATTTCGACGTATGGCCTCTATATA?CCCCAGTCGAAATGAGGGGATTGTTGTCACAGCATCTTGTTGTGGGACAATTTCGGA Isolepis_lenticularis_2 TGAACACGTAACATAATGCTACCG?GGG??AGTTCCATCTCCCCGGCCCTGCCGGCCCCAGCTTATTGGCTGGGTGTCGGAAAACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGACGACAATGCGCTCGTACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCTGTCAA????????????CCTTTTTACAGAGGATTGACTTGATGTGGACAATGGACCTCCGAGCCAGTAA????TGGCGCGGTGGGCTGAAGTGAACGGTCGTCGGATGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTGCCATTTCGACGTATGGCCTCTATATA?CCCCAGTCGAAATGAGGGGATTGTTGTCACAGCATCTTGTTGTGGGACAATTTCGGA Isolepis_fluitans_KN ?????????????????????????????????????????????????TGCCGACCGCAGCCTATTGGTTGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTAATTTGCGTAGGCAGACGACAATATGCTCGTACTGTTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGTGTTAGAAGCCCATCAACGCTCAGTCAA????????????CCTTTTTACAAAGGACTGACTTGACGTGGACAATGGACCTCCGAGCTAGTAA????TGGCACGGTGGGCTGAAGTGAATGGTCGTCGGATGGTAATAGGATCGGCAAGTGGTGGGCTA??CTGCGCATGCCAATCCTAGCTGCCATTTCGACGTATGGCCTCTATATAACCC?AGTCGTAACGAGGGGATTGTTGTCACAGCATCTTGTTGTGTGACAATTTCGGA Isolepis_fluitans_ET TGAACATGTAACATAATGCTGTCG?GG??GAGTTCCATCTCCTCGGCCCTGCCGACCCTAGCCTATTGGTTGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTAATTTGCGGAGGCAGACGACAATACGCTCGTACTGTTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGTGTTAGAAGCCCATCAACGCTCAGTCAA????????????CCTTTTTACAGAGGACTGACTTGACGTGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCTGAAGTGAATGGTCGTCGGATGGTAATAGGATCGGCAAGTGGTGGGCTA??CTGCGCATGCCAATCCTAGCTGCCATTTCGATGTATGGCCTCTATA?A?CCC?AGTCGTAACGAGGGGATTGTTGTCACAGCATCTTGTTGTGTGACAATTTCGGA Isolepis_gaudichaudiana TGAACACGTAACATAATGCTGCCG?GGG??AGTTCCATCTCCTCGGCCCTGCCGGCCCCAGCTTATTGGCCGGGTGTCGGAAAACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGACGACAATACGCTCGTACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCTGTCAA????????????CCTTTTTACAGAGGATTGACTTGACGCGGACAATGGACCTCCGAGCCAGTAA????CGGCACGGTGGGCTGAAGTGAATGGTCGTCGGATGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTGCCATTTCGACGTATGGCCTCTATA???CCCCAGTCGAAACGAGGGGATTGTTGTCACAGCATCTTGTTGTGGGACAATTTCGGA Isolepis_graminoides ?????????????????????????????????????????????????TGCCGACCCCAGCCTATTGGTTGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTAATTTGCGGAGGCAGACGACAATACGCTCGTACTGTTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGTGTTAGAAGCCCATCAACGCTCAGTCAA????????????CCTTTTTACAAAGGACTGACTTGACGTGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCTGAAGTGAATGGTCGTCGGATGGTAATAGGATCGGCAAGTGGTGGGCTA??CTGCGCATGCCAATCCTAGTTGCCATTTTGACGTATGGCCTCTATATAACCC?AGTCGTAACGAGGGGATTGTTGTCACAGCATCTTGTTGTGTGACAATTTCGGA Isolepis_habra TGAACACGTAACATAATGCTACCG?GGG??AGTTTCGTCTCCCCGGCCCTGCCGGCCCCAGCTTATTGGCCGGGTGTCGGAAAACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGACGACAATACGCTCGTACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCTGTCAA????????????CCTTTTTACAGAGGATTGACTTGACGCGGACAGTGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCTGAAGTGAATGGTCGTCGGATGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTGCCATTTCGACGTATGGCCTCCATA???CCCCAGTCGAAACGAGGGGATTGTTGTCACAGCATCTTGTTGCGGGACAATTTCGGA Isolepis_hystrix TGAACACGTAACATAGTGCTACCG?GGG??AGT?CCATCTCCTCGGCCCTGCCGGCCCCAGCCTGTTGGCTGGGAGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGACGACAGTATGCTCGTAATGCCGAAGCCAACTAAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCGGTCAA????????????CCTTTTTACAGAGGAAAGACTTGATGTGGAAAATGGACCTCCGAGTCATTAG????TGGCACGGTGGGCTGAAGTGCATGGTCGTCGGATTGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCGATCCTGATTGCCATTTTGACGTATGGCCTTTATA???CCCCAGTTGAAACGAGGGGATTGTTGTTGCATCATCTAGTTGCTTGACAATTTCGGA Isolepis_inundata TGAACACGTAACATAATGCTGCCG?GGG??AGTTCCATCTCCTCGGCCCTGCCGGCCCCGGCTTATTGGCTGGGTGTCGGAAAACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGACGACAATACGCTCGTACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCTGTCAA????????????CCTTTTTACAGAGGATTGACTTGACGCGGACAATGGACCTCCGAGCCGGTAA????TGGCACGGTGGGCTGAAGTGAATGGTCGTCGGATGGTAACGGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTGCCATTTCGACGTATGGCCTCTATA???CCCCAGTCGAAACGAGGGGATTGTTGTCACAGCATCTTGTTGTGGGACAATTTCGGA Isolepis_inyangensis ?????????????????????????????????????????????????TGCCGACCCCAGCCTATTGGCTGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTAATTTGCGGAGGCAGACGGCAATACGCTCGTACTGTTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGTGTTAGAAGCCCATCAACGCTCAGTCAA????????????CCTTTTTACAGAGGACTGACTTGACGTGGACAATGGACCTCCGAGCTAGTAA????TGGCACGGTGGGCTGAAGTGAATGGTCGTCGAATGGTAATAGGATCGGCAAGTGGTGGGCTA??CTGCGCATGCCAATCCTAGCTGCCATTTCGACGTATGGCCTCTATA???CCCCAGTCGTAACGAGGGGATTGTTGTCACAGCATCTTGTTGTGTGACAATTTCGGA Isolepis_keniaensis TGAACATGTAACATAATGCTACCG?GGG??AGATGGCTCTCCCCGGCCCTGCCGGCCCCAGCCCATTGGGTGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAAGCAGATGACATTGCG?TTGTGCTGTTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACACTCGGTCAA????????????CCTTGTTACAGAGGAAGGACTTGATGTGGACAATGGACCTCCGAGCCAGCAA????TGGCACGGTGGGCTGAAGTTAATGGTCGTCGGATGGTAACATGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCATTGCTACCATTCCGACGTATGGCCTCTATA???CCCCAGTCGTAACGAGGGGATTGTTGTTGCAGCAGCATGTTGTTTCACAATTTCGGA Isolepis_levynsiana TGAACATGTAACGTAATGCTACCG?GGG??AGAGCCATCTCCTCGGCCCTGCCGGCCCCAGCCTGTTGGCTGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGACGACATTACG?TTGTACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCAAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACACTCGGTCAG????????????CCTTGTTAAAGAGGACGGACTCGATGTGGACAATGGTCCTCCGATCCAGTAA????TGGAACGGTGGGCTGAAGTTAATGGTCGTCGGATGGTGACATGATCGGCGAGTGGTGGGCTA??CTGCGCATGTCGATCACAGCTACCATTTCGATGTACGGCCAATTCA???CCCCAGTCAAAACGAGGGGATTGTTGATTCAGCTTCTTGTTGTTTCACAATTTCGGA Isolepis_ludwigii_ ??????????????????????????????????????????????????????????CAGCCTATTGGCTGGTTGTCGGAATACGGCGCGGGATGTCGCCGAGGAACACTAATTTGCGGAGGCAGACGACAATACGCTCGTACTGTTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGTGTTAGAAGCCCATCAACGCTCGGTCAA????????????CCTTTTTACAGAGGACTGACTTGACGCGGACAATGGACCTCCGAGCTAGTAA????TGGCACGGAGGGCTGAAGTGAATGGTCGTCGGATGGTAATAGGATCGGCAAGTGGTGGGCTA??CTGCGCATGCCGATCCTAGCTACCATTTCGACGTATGGCCTCTATA???CCCCAGTCGTAAAGAGGGGATTGTTGTCACAGCATCTTGTTGTGTGACAATTTCGGA Isolepis_meruensis TGAAGATGTAACGTATTGCTACCG?GGG??AGAGCCATCTCCTCGGCCCTGCCGACCCCAGCCAATTGGTTGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGGTGACAATATG?TTGCACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACACTCGGTCAA????????????CCTTTATTTAGAGGACGGACTTGATGTGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCTGAAGTTAATGGTCGTCGGATGGTGACTTGATCGACGAGTTGTGGGCTA??CTGCGCATGTCGATCAAGGCTACCATTTCGATGTATGGCCTCTATA???CCCCAGTCGTAATGAGGGGATTGTTGTTGCAGCATCTTGTTGTTTCACAATTTCGGA Isolepis_montivaga TGAACACGTAACATAATGCTACCG?GGG??AGTTCCATCTCCCCGGCCCTGCCGGCCCCAGCTTATTGGCCGGGTGTCGGAAAACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGACGACAATACGCTCGTACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCTGTCAA????????????CCTTCTTACAGAGGATTGACTTGACGCGGACAATGGACCTCCGAGCCGGTAA????TGGCACGGTGGGCTGAAGTGAATGGTCGTCGGATGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTGCCATTTCGACGTATGGCCTCTATA???CCCCAGTCGAAACGAGGGGACTGTTGTCACAGCATCTTGTTGTGGGACAATTTCGGA Isolepis_pellocolea TGAACATGTAACATAACGCTACCG?GGG??AGTTCCATCTCCTCGGCCCTGCCGGCCCCGGCTTATTGGCCGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGACGACAATACGCTCGTACTGCTGACGCCAACATAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCTTGACG????????????CCTTTTCACATAGGATTGACTTGACGCGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCTGAAGTGAAGGGTCGTCGGATGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTGCCATTTCGACGTACGGCCTCTATA???CCCCAGTCGAAACGAGGGGATTGTTGTCACAGCATCTTGTTGCGGGACAATTTCGGA Isolepis_platycarpa TGAACATGTAACGTAATGCTACCG?GGG??AGAGCCATCTCCTCGGCCCTGCCGACCCCAGCCAATTGGTTGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGGTGACAATATG?TTGCACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACACTCGGTCAA????????????CCTTTATTTAGAGGACGGACTTGATGTGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCTGAAGTTAATGGTCGTCGGATGGTGACTTGATCGACGAGTTGTGGGCTA??CTGCGCATGTCGATCAAGGCCACCATTTCGATGTATGGCCTCTATA???CCCCAGTCGTAACGAGGGGATTGTTGTTGCAGCATCTTGTTGTTTCACAATTTCGGA Isolepis_pottsii CGAACACGTAACATAATGCTGCCG?GGG??AGTTCCGTCTCCTCGGCCCTGCCGRCCCCGGCTTATTGGCCGGGTGTCGGAAAACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCCGAGGCAGACGACA?TACGCTCGTTCTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCCGTCAA????????????CCTTTTTACAGAGGATTGACCTGACGCGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCTGAAGTGAATGGTCGTCGGATGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTGCCATTTCGACGTGCGGCCTCTGTA???CCCCAGTCGAAACGAGGGGATTGTTGTCACGGCATCTTGTTGTGGGACAATTTCGGA Isolepis_producta TGAACATGTAACATAATGCTACCG?GGG??AGTTCCATCTCCTCGGCCCTGCCGGCCCCAGCTTATTGGCTGGGTGTCGGAAAACGGCACGGGATGTTGCCAAGGAACACTGATTTGCTGAGGCAGACGACAATACGCTCGTACTGCTGACGCCAACTTAACATTATGACTCCCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCTGTCAA????????????CCTTTTTACAGAGGATTGACTTGACGCGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCTGAAGTGCATGGTCGTCGGACGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTGCCATTTCGACGTATGGCCTCTATA???CCCCAGTCGAAACGAGGGGATTGTTGTCACAGCATCTTGTTGTGGGACAATTTCGGA Isolepis_prolifera_NZ TGAACACGTAACATAATGCTACCG?GGG??AGTTCCATCTCCTCGGCCCTGCCGGCCCCAGCTTATTGGCTGGGCGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCGGGCGACAATACGCTCGTACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCCGTCAA????????????CCTTTTTACAGAGGATTGACTCGACGCGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGCGGGCTGAAGTGAATGGTCGTCGGATGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTTCCATTTCGACGTATGGCCTCTGTA???CCCCAGTCGAAACGAGGGGATTGTTGTCACAGCATCTTGTTGTGGGGCAATTTCGGA Isolepis_prolifera_SA TGAACACGTAACATAATGCTACCG?GGG??AGTTCCATCTCCTCGGCCCTGCCGGCCCCAGCTTATTGGCTGGGCGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGGCGACAATACGCTCGTACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCCGTCAA????????????CCTTTTGACAGAGGATTGACTCGACGCGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGCGGGCTGAAGTGAATGGTCGTCGGATGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTTCCATTTCGACGTATGGCCTCTGTA???CCCCAGTCGAAACGAGGGGATTGTTGTCACAGCATCTTGTTGTGGGGCAATTTCGGA Isolepis_reticularis TGAACACGTAACATAATGCTGCCG?GGG??AGTTCCATCTCCTCGGCCCTGCCGGCCCCAGCTTATTGGCTGGGTGTCGGAAAACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGACGACAATACGCTCGTACTGCTGACGCCGACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCT?TCAA????????????CCCTTTTACAGAGGATTGACTTGACGCGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCTGAAGTGAATGGTCGTCGGATGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTGCCATTTCGACGTATGGCCTCTATA???CCCCAGTCGAAACGAGGGGATTGTCGTCACAGCATCTTGTTGTGGGACGATTTCGGA Isolepis_rubicunda ??????????????????????????????????????????????????GCCGACCCCGGCCTATTGGCGGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCGGAGGCAGACGACAACACGCTCGTACTGTTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCTGAGGGCACGCCTGCCTGGGTGTTAGAAGCCCATCAACGCTCGGTCAA????????????CCTTTTTACATAGGACTGACTTGACGCGGACAATGGACCTCCGAGCCAGTAA????CGGCACGGCGGGCTGAAGTGAATGGTCGTCAGATGGTTAGAGGATCGGCAAGTGGTGGGCTA??CTGCGCATGCCAATCCCAGCTGCCATTTCGACGTATGGCCTGTATA???CCCCAGTCGTAACGAGGGGATTGTTTTCACAGCATCTTGTTGTGTGACAATTTCGGA Isolepis_sepulcralis TGAACATGTAACATAGTGCTACCG?GG??GAGTTCCATCTCCTCGGCCCTGCCGGCCCCAGTCTGTTGGTTGGGAGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGACGACATTACGCTCGTATTGCTGAAGCCAACTAAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCGGTCAA????????????CCTTTTTACAGAGGACAGATTTGACGTGGAAAATGGACCTCCGAGTCATTAG????TGGCACGGTGGGCTGAAGTGCATGGTCGTCGGATGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCGATCCTAATTTCCATTTTGACGTATGGCCTCTATA???CCCCAGTTGAAACGAGGGGATTGTTGTTGCAGCATCTTGTTGTTTGACAATTTCGGA Isolepis_setacea_KN TGAACATGTAACATAATGCTACCG?GG??GAGAGCCATCTCCCCGGCCCTGCCGGCCCCAGCTCATTGGTTGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGACGACATTGCG?TTGTGCTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACACTCGGTTAA????????????CCTTGTTACAGAGGAAGGACTTGATGTGGACAATGGACCTCCGAGCCAGCAA????TGGCACGGTGGGCTGAAGTTAATGGTCGTCGGATGGTAACATGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCATTGCTACCATTCCGACGTATGGCCTCGATA???CCCCAGTCGTAACGAGGGGATTGTTGTTGCAGCAGCATGTTGTTTCACAATTTCAGA Isolepis_setacea_NP TGAACATGTAACATAATGCTACCG?GG??GAGAGCCATCTCCCCGGCCCTGCCGGCCCCAGCTCATTGGTTGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGACGACATTGTG?TTGTGCTGTTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACACTCGGTCAA????????????CCTTGTTACAGAGGAAGGACTTGATGTGGACAATGGACCTCCGAGCCAGCAA????TGGCACGGTGGGCTGAAGTTAATGGTCGTCGAATGGTAACATGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCATTGCTACCATTTCGCCGTATGGCCTCTATA???CCCCAGTCGTAACGAGGGGATTGTTGTTGCAGCATCTTGTTGTTTCACAATTTCGGA Isolepis_striata TGAACATGTAATATAATGCTACCG?GG??GAGTTC?ATCTCCTCGGCCCTGCCGACCCCAGCCTAATGACTGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCGAAGGCAGACGACAATACGCTCGTACTGTTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGTGTTAGAAGCCCATCAACGCTCGCTCAA????????????CCTTTTTATAGAGGACTGACGTGACGTGGACAATGGACCTCCGAGCCAGTATGTATTGGCACGGTGGGCTGAAGTGAATGGCCGTCAGATGGTAACAGGATCGGCAAGTGGTGGGCTA??CTGCGCATGCCAAT??T?GCTGCCATTTCGACGTATGGCCTCTATA???CCCCAGTCGTAACGAGGGAATTGTTGTCACAGCATCTTGTTGTGTGACAATTTCGGA Isolepis_subtilissima TGAACACGTAACATAATGCTACCG?GG??GAGTTCCGTCTCCCCGGCCCTGCCGGCCCCAGCTTATTGGCCGGGTGTCGGAAAACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGACGACAATACGCTCGTACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCTGTCAA????????????CCTTTTTACAGAGGATTGACTTGACGCGGACAGTGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCTGAAGTGAATGGTCGTCGGATGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTGCCATTTCGACGTATGGCCTCCATA???CCCCAGTCGAAACGAGGGGATTGTTGTCACAGCATCTTGTTGCGGGACAATTTCGGA Isolepis_sulcata TGAACACGTAACATAATGCTACCG?GG??GAGTTCCGTCTCCTCGGCCCTGCCGGCCCCAGCTTATTGGCTGGGCGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGGCGACAATACGCTCGTACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCCGTCAA????????????CCTTTTTACAGAGGATTGACTCGACGCGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGCGGGCTGAAGTGAATGGTCGTCGGATGTTAACGGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTTCCATTTCGACGTATGGCCTCTGTA???CCCCAGTCGAAACGAGGGGATTGTTGTCACAGCATCTTGTTGTGGGGCAATTTCGGA Isolepis_varians TGAACACGTAACATAATGCTGCCG?GG??GAGTTCCGTCTCCTCGGCCCTGCCGGCCCCAGCTTATTGGCCGGGTGTCGGAAAACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCGGACGACAATACGCTCGTTCTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCCGTCAA????????????CCTTTTTACAGAGGACTGACTCGACGCGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGTGGGCTGAAGTGAATGGTCGTCGGATGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTGCCATTTCGACGCATGGCCTCTGTA???CCCCAGTCGAAACGAGGGGATTGTCGTCACAGCATCTTGTTGCGGGACAATTTCGGA Isolepis_venustula TGAACATGTAACGTAATGCTACCG?GG??GAGAGCCATCTCCTCGGCCCTGCCGACCCCAGCCAATTGGTTGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGGTGACAATATG?TTGCACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACACTCGGTCAA????????????CCTTTCTTTAGAGGACGGACTTGATGTGGACAATGGACCTCCGAGCCAGTGA????TGGCACGGTGGGCTGAAGTTAATGGTCGTCGGATGGTGACTTGATCGACGAGTTGTGGGCTA??CTGCGCATGTCGATCAAGGCTACCATTTCGATGTATGGCCTCTATA???CCCCAGTCGTAACGAGGGGATTGTTGTTGCAGCATCTTGTTGTTTCACAATTTCGGA Isolepis_verruculosa TGAACATGTAACGTAATGCTACCG?GG??GAGAGCCATCTCCTCGGCCCTGCCGACCCCAGCCAATTGGTTGGGTGTCGGAATACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGGTGACAATATG?TTGCAATGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACACTCGGTCAA????????????CCTTTTTTTAGAGGACAGACTTGATGTGGACAATGGACCTCCGAGCCAGTAA????TGGCACGGCGGGCTGAAGTTAATGGTCGTCGGATGGTGACTTGATCGACGAGTTGTGGGCTA??CTGCGCATGTCGATGAAGGCTACCATTTCGATGTATGGCCTCTATA???CCCCAGTCGTAACGAGGGGATTGTTGTTGCAGCATCTTGTTGTTTCACAATTTCGGA Isolepis_wakefieldiana TGAACACGTAACATAATGCTGCCG?GG??GAGTTCCATCTCCTCGGCCCTGCCGGCCCCGGCTTATTGGCTGGGTGTCGGAAAACGGCGCGGGATGTCGCCAAGGAACACTGATTTGCTGAGGCAGACGACAATACGCTCGTACTGCTGACGCCAACTTAACATTATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGGATCCTCCCGAGGGCACGCCTGCCTGGGCGTTAGAAGCCCATCAACGCTCTGTCAA????????????CCTTTCTACAGAGGATTGACTTGACGCGGACAATGGACCTCCGAGCCGGCAA????TGGCACGGCGGGCTGAAGTGAATGGTCGTCGGATGGTAACAGGATCGGCGAGTGGTGGGCTA??CTGCGCATGCCAATCCCGGCTGCCATTTCGACGTATGGCCTCTATA???CCCCAGTCGAAACGAGGGGATTGTTGTCACGGCATCTTGTTGTGGGACAATTTCGGA ; END; begin paup; set autoclose = yes warnreset = no increase = prompt; set criterion = parsimony; hsearch; pset opt = acctran; roottrees outroot = monophyl; describetrees 1 / plot = phylogram brlens = yes; savetrees file = Isolepis_ITS_Treebase.tre brlens = yes; contree all / strict = yes tcompress = yes treefile = Isolepis_ITS_Treebase_contree.tre; bootstrap nrep = 1000 conlevel = 50 treefile = Isolepis_ITS_Treebasebs.tre; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 583; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 583; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 583; END; BEGIN TREES; Title 'Trees from "Isolepis_ITS_Treebase_contree.tre"'; LINK Taxa = Taxa; TRANSLATE [0] 1 Dracoscirpoides_falsa, [1] 2 Hellmuthia_membranacea, [2] 3 Ficinia_pinguior_, [3] 4 Isolepis_aucklandica, [4] 5 Isolepis_bicolor, [5] 6 Isolepis_cernua_FA, [6] 7 Isolepis_costata, [7] 8 Isolepis_crassiuscula_JP, [8] 9 Isolepis_crassiuscula_NZ, [9] 10 Isolepis_diabolica, [10] 11 Isolepis_digitata, [11] 12 Isolepis_fluitans_SP, [12] 13 Isolepis_lenticularis_1, [13] 14 Isolepis_lenticularis_2, [14] 15 Isolepis_fluitans_KN, [15] 16 Isolepis_fluitans_ET, [16] 17 Isolepis_gaudichaudiana, [17] 18 Isolepis_graminoides, [18] 19 Isolepis_habra, [19] 20 Isolepis_hystrix, [20] 21 Isolepis_inundata, [21] 22 Isolepis_inyangensis, [22] 23 Isolepis_keniaensis, [23] 24 Isolepis_levynsiana, [24] 25 Isolepis_ludwigii_, [25] 26 Isolepis_meruensis, [26] 27 Isolepis_montivaga, [27] 28 Isolepis_pellocolea, [28] 29 Isolepis_platycarpa, [29] 30 Isolepis_pottsii, [30] 31 Isolepis_producta, [31] 32 Isolepis_prolifera_NZ, [32] 33 Isolepis_prolifera_SA, [33] 34 Isolepis_reticularis, [34] 35 Isolepis_rubicunda, [35] 36 Isolepis_sepulcralis, [36] 37 Isolepis_setacea_KN, [37] 38 Isolepis_setacea_NP, [38] 39 Isolepis_striata, [39] 40 Isolepis_subtilissima, [40] 41 Isolepis_sulcata, [41] 42 Isolepis_varians, [42] 43 Isolepis_venustula, [43] 44 Isolepis_verruculosa, [44] 45 Isolepis_wakefieldiana; TREE Strict = (1,(2,(3,((4,(5,32,33,41),(((((6,26,29,43,44),24),(((10,23),37),38)),(20,36)),((12,(15,16,18),22,25),(35,39))),(7,28),((8,9),31),(13,14),17,(19,40),(21,45),27,30,34,42),11)))); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1435028810398; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1502786167400284398; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2835727843435302795; mqVersion 303; checksumv 0 3 1926218232 null getNumChars 583 numChars 583 getNumTaxa 45 numTaxa 45 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 503914.0 sumSquares 4.6116860184274268E18 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1920 980; setLocation -11 -11; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #1502786167400284398 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1089.1435028796987.3230662351475550188; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 908; setLocation -11 -11; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #2835727843435302795 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 908; setLocation -11 -11; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;