#NEXUS [written Fri Jun 19 13:19:38 CEST 2015 by Mesquite version 3.03 (build 702) at Utente/172.22.203.4] BEGIN TAXA; TITLE Gnomoniopsis_Taxa; DIMENSIONS NTAX=28; TAXLABELS Gnomoniopsis_smithogilvyi_BL165 Gnomoniopsis_smithogilvyi_BL166 Gnomoniopsis_smithogilvyi_BL176 Gnomoniopsis_castanea_Rb7_type Gnomoniopsis_castanea_NZ11 Gnomoniopsis_smithogilvyi_CBS130188 Gnomoniopsis_smithogilvyi_CBS130190_type Gnomoniopsis_castanea_CH4 Gnomoniopsis_paraclavulata_CBS123202 Gnomoniopsis_paraclavulata_AR4313 Gnomoniopsis_alderdunense_CBS125680 Gnomoniopsis_alderdunense_CBS125681 Gnomoniopsis_guttulata_MS0312 Gnomoniopsis_occulta_CBS125677 Gnomoniopsis_occulta_CBS125678 Gnomoniopsis_chamaemori_CBS804_79 Gnomoniopsis_racemula_AR3892 Gnomoniopsis_fructicola_CBS208_34 Gnomoniopsis_fructicola_AR4275 Gnomoniopsis_comari_CBS806_79 Gnomoniopsis_comari_CBS807_79 Gnomoniopsis_tormentillae_CBS904_79 Gnomoniopsis_idaeicola_CBS125672 Gnomoniopsis_idaeicola_CBS125674 Gnomoniopsis_sanguisorbae_CBS858_79 Gnomoniopsis_sanguisorbae_CBS125299 Gnomoniopsis_macounii_AR3866 Apiognomonia_veneta_AR4184 ; END; BEGIN CHARACTERS; TITLE Gnomoniopsis_Character_Matrix; DIMENSIONS NCHAR=573; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX Gnomoniopsis_smithogilvyi_BL165 GATCATTGCTGGAACAAACGCCCTCACGGGTGCTACCCAGAAACCCTTTG Gnomoniopsis_smithogilvyi_BL166 GATCATTGCTGGAACAAACGCCCTCACGGGTGCTACCCAGAAACCCTTTG Gnomoniopsis_smithogilvyi_BL176 GATCATTGCTGGAACAAACGCCCTCACGGGTGCTACCCAGAAACCCTTTG Gnomoniopsis_castanea_Rb7_type --------------------CCCTCACGGGTGCTACCCAGAAACCCTTTG Gnomoniopsis_castanea_NZ11 ---------GGAACAAACGCCCCTCACGGGTGCTACCCAGAAACCCTTTG Gnomoniopsis_smithogilvyi_CBS130188 ---------------------CCTCACGGGTGCTACCCAGAAACCCTTTG Gnomoniopsis_smithogilvyi_CBS130190_type ---------------------CCTCACGGGTGCTACCCAGAAACCCTTTG Gnomoniopsis_castanea_CH4 ---------------------CCTCACGGGTGCTACCCAGAAACCCTTTG Gnomoniopsis_paraclavulata_CBS123202 --TCATTGCTGGAACAAACGCCCTCACGGGTGCTACCCAGAAACCCTTTG Gnomoniopsis_paraclavulata_AR4313 --TCATTGCTGGAATACACGCCCTCACGGGTGCTACCCAGAAACCCTTTG Gnomoniopsis_alderdunense_CBS125680 --TCATTGCTGGAACAAACGCCCCCACGGGTGCTACCCAGAAACCCTTTG Gnomoniopsis_alderdunense_CBS125681 --TCATTGCTGGAACAAACGCCCCCACGGGTGCTACCCAGAAACCCTTTG Gnomoniopsis_guttulata_MS0312 --TCATTGCTGGAACAAACGCCCTCACGGGTGCTACCCAGAAACCCTTTG Gnomoniopsis_occulta_CBS125677 --TCATTGCTGGAACAAACGCCCTCACGGGTGCTACCCAGAAACCCTTTG Gnomoniopsis_occulta_CBS125678 --TCATTGCTGGAACAAACGCCCTCACGGGTGCTACCCAGAAACCCTTTG Gnomoniopsis_chamaemori_CBS804_79 --TCATTGCTGGAACAAACGCCCTCACGGGTGCTACCCAGAAACCCTTTG Gnomoniopsis_racemula_AR3892 --TCATTGCTGGAACAAACGCCCTCACGGGTGCTACCCAGAAACCCTTTG Gnomoniopsis_fructicola_CBS208_34 --TCATTGCTGGAACAAACGCCCTCACGGGTGCTACCCAGAAACCCTTTG Gnomoniopsis_fructicola_AR4275 --TCATTGCTGGAACAAACGCCCTCACGGGTGCTACCCAGAAACCCTTTG Gnomoniopsis_comari_CBS806_79 --TCATTGCTGGAACAAACGCCCTCACGGGTGCTACCCAGAAACCCTTTG Gnomoniopsis_comari_CBS807_79 --TCATTGCTGGAACAAACGCCCTCACGGGTGCTACCCAGAAACCCTTTG Gnomoniopsis_tormentillae_CBS904_79 --TCATTGCTGGAACAAACGCCCTCACGGGTGCTACCCAGAAACCCTTTG Gnomoniopsis_idaeicola_CBS125672 --TCATTGCTGGAACAAACGCCCTCACGGGTGCTACCCAGAAACCCTTTG Gnomoniopsis_idaeicola_CBS125674 --TCATTGCTGGAACAAACGCCCTCACGGGTGCTACCCAGAAACCCTTTG Gnomoniopsis_sanguisorbae_CBS858_79 --TCATTGCTGGAATAAACGCCCTCACGGGTGCTACCCAGAAACCCTTTG Gnomoniopsis_sanguisorbae_CBS125299 --TCATTGCTGGAATAAACGCCCTCACGGGTGCTACCCAGAAACCCTTTG Gnomoniopsis_macounii_AR3866 --TCATTGCTGGAACAAACGCCCTCACGGGTGCTACCCAGAAACCCTTTG Apiognomonia_veneta_AR4184 --TCATTGCTGGAACAAACGCCCTCACGGGTGCTACCCAGAAACCCTTTG Gnomoniopsis_smithogilvyi_BL165 TGAATTCTTCT-CA--TTGTTGCCTCGGCATGGACTGGCTTCCTATGGAA Gnomoniopsis_smithogilvyi_BL166 TGAATTCTTCT-CA--TTGTTGCCTCGGCATGGACTGGCTTCCTATGGAA Gnomoniopsis_smithogilvyi_BL176 TGAATTCTTCT-CA--TTGTTGCCTCGGCATGGACTGGCTTCCTATGGAA Gnomoniopsis_castanea_Rb7_type TGAATTCTTCT-CA--TTGTTGCCTCGGCATGGACTGGCTTCCTATGGAA Gnomoniopsis_castanea_NZ11 TGAATTCTTCT-CA--TTGTTGCCTCGGCATGGACTGGCTTCCTATGGAA Gnomoniopsis_smithogilvyi_CBS130188 TGAATTCTTCT-CA--TTGTTGCCTCGGCATGGACTGGCTTCCTATGGAA Gnomoniopsis_smithogilvyi_CBS130190_type TGAATTCTTCT-CA--TTGTTGCCTCGGCATGGACTGGCTTCCTATGGAA Gnomoniopsis_castanea_CH4 TGAATTCTTCT-CA--TTGTTGCCTCGGCATGGACTGGCTTCCTATGGAA Gnomoniopsis_paraclavulata_CBS123202 TGAATTATTCT-CA--TTGTTGCCTCGGCATTGACTGGCCTCTTCTGGAG Gnomoniopsis_paraclavulata_AR4313 TGAATTATACTATAACCTGTTGCCTCGGCAGTGACTGGCTTTCTCTGAAA Gnomoniopsis_alderdunense_CBS125680 TGAATTCTTCTCTA--TTGTTGCCTCGGCGCAGACTGGCTTCGT-ACGAA Gnomoniopsis_alderdunense_CBS125681 TGAATTCTTCTCTA--TTGTTGCCTCGGCGCAGACTGGCTTCGT-ACGAA Gnomoniopsis_guttulata_MS0312 TGAATTATTCTCTA--TTGTTGCCTCGGCGCAGACTGGCTTCGT-ACGAA Gnomoniopsis_occulta_CBS125677 TGAATTATTCTCTA--TTGTTGCCTCGGCGCAGACTGGCTTCGT-ACGAA Gnomoniopsis_occulta_CBS125678 TGAATTATTCTCTA--TTGTTGCCTCGGCGCAGACTGGCTTCGT-ACGAA Gnomoniopsis_chamaemori_CBS804_79 TGAATTATTCTCTA--TTGTTGCCTCGGCGCAGACTGGCTTCGT-ACGAA Gnomoniopsis_racemula_AR3892 TGAATTCTTCTCTA--TTGTTGCCTCGGCGCAGACTGGCTTCTTCACGAA Gnomoniopsis_fructicola_CBS208_34 TGAATCATTCTCTA--TTGTTGCCTCGGCGCAGACCGGCTTCGT-ACGAA Gnomoniopsis_fructicola_AR4275 TGAATCATTCTCTA--TTGTTGCCTCGGCGCAGACCGGCTTCGT-ACGAA Gnomoniopsis_comari_CBS806_79 TGAATTCTTCTCTA--TTGTTGCCTCGGCGCAGGCTGGCTTCGT-ACGAA Gnomoniopsis_comari_CBS807_79 TGAATTCTTCTCTA--TTGTTGCCTCGGCGCAGGCTGGCTTCGT-ACGAA Gnomoniopsis_tormentillae_CBS904_79 TGAATTCTTCTCTA--TTGTTGCCTCGGCGCAGACTGGCTTCGT-ACGAA Gnomoniopsis_idaeicola_CBS125672 TGAATTCTTCTCTA--TTGTTGCCTCGGCACAGACTGGCTTCCT-ACGAA Gnomoniopsis_idaeicola_CBS125674 TGAATTCTTCTCTA--TTGTTGCCTCGGCACAGACTGGCTTCCT-ACGAA Gnomoniopsis_sanguisorbae_CBS858_79 TGAATTCTTCTTTA--TTGTTGCCTCGGCATAGACTGGCTTCCT-ACGAA Gnomoniopsis_sanguisorbae_CBS125299 TGAATTCTTCTTTA--ATGTTGCCTCGGCACAGACTGGCTTCCT-ACGAA Gnomoniopsis_macounii_AR3866 TGAATTCTTCT-TA--TTGTTGCCTCGGCATAGACTGGCTTCGT--AGAA Apiognomonia_veneta_AR4184 TGAATACTACC-TAAAATGTTGCCTCGGCATTGGTTGGCCTCTT--TGAG Gnomoniopsis_smithogilvyi_BL165 GTCCCTCT---------TC-----TTCGGA-AGC-----GGAGCAGGTCG Gnomoniopsis_smithogilvyi_BL166 GTCCCTCT---------TC-----TTCGGA-AGC-----GGAGCAGGTCG Gnomoniopsis_smithogilvyi_BL176 GTCCCTCT---------TC-----TTCGGA-AGC-----GGAGCAGGTCG Gnomoniopsis_castanea_Rb7_type GTCCCTCT---------TC-----TTCGGA-AGC-----GGAGCAGGTCG Gnomoniopsis_castanea_NZ11 GTCCCTCT---------TC-----TTCGGA-AGC-----GGAGCAGGTCG Gnomoniopsis_smithogilvyi_CBS130188 GTCCCTCT---------TC-----TTCGGA-AGC-----GGAGCAGGTCG Gnomoniopsis_smithogilvyi_CBS130190_type GTCCCTCT---------TC-----TTCGGA-AGC-----GGAGCAGGTCG Gnomoniopsis_castanea_CH4 GTCCCTCT---------TC-----TTCGGA-AGC-----GGAGCAGGTCG Gnomoniopsis_paraclavulata_CBS123202 GTCCCTTTC--------TC-----TTCGGGGAAA-----GGAGCAGGTCG Gnomoniopsis_paraclavulata_AR4313 GTCCCTTTT--------TTGTTTATTCGAA-AAA-----GGAGCAGGTCG Gnomoniopsis_alderdunense_CBS125680 GTCCCT-----------TG-----TTGGCAACAGC--AAGGAGCAGGTCG Gnomoniopsis_alderdunense_CBS125681 GTCCCT-----------TG-----TTGGCAACAGC--AAGGAGCAGGTCG Gnomoniopsis_guttulata_MS0312 GTCCCT-----------TG-----TTGGCAACAGC--AAGGAGCAGGTCG Gnomoniopsis_occulta_CBS125677 GTCCCT-----------TG-----TTGGCAACAGC--AAGGAGCAGGTCG Gnomoniopsis_occulta_CBS125678 GTCCCT-----------TG-----TTGGCAACAGC--AAGGAGCAGGTCG Gnomoniopsis_chamaemori_CBS804_79 GTCCCT-----------TG-----TTGGCAACAGC--AAGGAGCAGGTCG Gnomoniopsis_racemula_AR3892 GCCCCT-----------T-------TGGCAACA----AAGGAGCAGGTCG Gnomoniopsis_fructicola_CBS208_34 GTCCCT-----------T------TTTGCAAGAA---AAGGAGCAGGTCG Gnomoniopsis_fructicola_AR4275 GTCCCT-----------T------TTTGCAAGAA---AAGGAGCAGGTCG Gnomoniopsis_comari_CBS806_79 GTCCCG-----------T------TTCGCAAGAA---ACGGAGCAGGTCG Gnomoniopsis_comari_CBS807_79 GTCCCG-----------T------TTCGCAAGAA---ACGGAGCAGGTCG Gnomoniopsis_tormentillae_CBS904_79 GTCCCG-----------T------TTCGCAAGAA---ACGGAGCAGGTCG Gnomoniopsis_idaeicola_CBS125672 GTCCCCTATTTTCCTTCTC-----TTCGGAGGGGGTAAGGGAGCAGGTCG Gnomoniopsis_idaeicola_CBS125674 GTCCCCTATTTTCCTTCTC-----TTCGGAGGGGGTAAGGGAGCAGGTCG Gnomoniopsis_sanguisorbae_CBS858_79 GCCCC------------TT-----TTTGCAAAAAG---AGGAGCAGGTCG Gnomoniopsis_sanguisorbae_CBS125299 GCCCC------------TT-----TTTGCAAAAAG---AGGAGCAGGTCG Gnomoniopsis_macounii_AR3866 GTCCCTT----------CT-----CTTCCGAGAG---ACGGAGCAGGTCG Apiognomonia_veneta_AR4184 GTCCCTT----------TCC----CTCGGGGAA------GGAGCAGACCG Gnomoniopsis_smithogilvyi_BL165 GCCGGTGGCCC--TATAAACTCTTTGTTTTT--ACAGTGTATCTTCTGAG Gnomoniopsis_smithogilvyi_BL166 GCCGGTGGCCC--TATAAACTCTTTGTTTTT--ACAGTGTATCTTCTGAG Gnomoniopsis_smithogilvyi_BL176 GCCGGTGGCCC--TATAAACTCTTTGTTTTT--ACAGTGTATCTTCTGAG Gnomoniopsis_castanea_Rb7_type GCCGGTGGCCC--TATAAACTCTTTGTTTTT--ACAGTGTATCTTCTGAG Gnomoniopsis_castanea_NZ11 GCCGGTGGCCC--TATAAACTCTTTGTTTTT--ACAGTGTATCTTCTGAG Gnomoniopsis_smithogilvyi_CBS130188 GCCGGTGGCCC--TATAAACTCTTTGTTTTT--ACAGTGTATCTTCTGAG Gnomoniopsis_smithogilvyi_CBS130190_type GCCGGTGGCCC--TATAAACTCTTTGTTTTT--ACAGTGTATCTTCTGAG Gnomoniopsis_castanea_CH4 GCCGGTGGCCC--TATAAACTCTTTGTTTTT--ACAGTGTATCTTCTGAG Gnomoniopsis_paraclavulata_CBS123202 GCCGGTGGCCC--TATAAACTCTTTGTTTTT--ACAGTGTATCTTCTGAG Gnomoniopsis_paraclavulata_AR4313 GCCGGTGGCCC--TATAAACTCTTTGTTTTT--ACTATGTATCTTCTGAG Gnomoniopsis_alderdunense_CBS125680 GCCGGTGGCCC--TATAAACTCTATGTTTTT----CATGTATCTTCTGAG Gnomoniopsis_alderdunense_CBS125681 GCCGGTGGCCC--TATAAACTCTATGTTTTT----CATGTATCTTCTGAG Gnomoniopsis_guttulata_MS0312 GCCGGTGGCCC--TATAAACTCTATGTTTTT----CTTGTATCTTCTGAG Gnomoniopsis_occulta_CBS125677 GCCGGTGGCCC--TATAAACTCTTTGTTTTC----CTTGTATCTTCTGAG Gnomoniopsis_occulta_CBS125678 GCCGGTGGCCC--TATAAACTCTTTGTTTTC----CTTGTATCTTCTGAG Gnomoniopsis_chamaemori_CBS804_79 GCCGGTGGCCC--TATAAACTCTTTGTTTTTT---CTTGTTTCCTCTGAG Gnomoniopsis_racemula_AR3892 GCCGGTGGCCC--TATAAACTCTATGTTTTT----CTTGTATTTTCTGAG Gnomoniopsis_fructicola_CBS208_34 GCCGGTGGCCC--TATAAACTCTT-GTTTTT----TTTGTATCTTCTGAG Gnomoniopsis_fructicola_AR4275 GCCGGTGGCCC--TATAAACTCTT-GTTTTT----TTTGTATCTTCTGAG Gnomoniopsis_comari_CBS806_79 GCCGGTGGCCC--TATAAACTCTTTGTTTTT----CTTGTATCTTCTGAG Gnomoniopsis_comari_CBS807_79 GCCGGTGGCCC--TATAAACTCTTTGTTTTT----CTTGTATCTTCTGAG Gnomoniopsis_tormentillae_CBS904_79 GCCGGTGGCCC--TATAAACTCTTTGTTTTT----CTTGTATCTTCTGAG Gnomoniopsis_idaeicola_CBS125672 GCCGGTGGCCCACTATAAACTCTTTGTTTTT--ACTATGTATCTTCTGAG Gnomoniopsis_idaeicola_CBS125674 GCCGGTGGCCCACTATAAACTCTTTGTTTTT--ACTATGTATCTTCTGAG Gnomoniopsis_sanguisorbae_CBS858_79 GCCGGTGGCCC--TATAAATTCTCTGTTTTTTTAATTTGTATCTTCTGAG Gnomoniopsis_sanguisorbae_CBS125299 GCCGGTGGCCC--TATAAACTCTCTGTTTTTTAAATCTGTATCTTCTGAG Gnomoniopsis_macounii_AR3866 GCCGGTGGCCC--TATAAACTCTTTGTTTTT----CTTGTATCTTCTGAG Apiognomonia_veneta_AR4184 GCCGGTGGCCC--TATAAACTCTT-GTTTTT----GTAATATCATCTGAG Gnomoniopsis_smithogilvyi_BL165 TAAACAACTATAAATGAATCAAAACTTTTAACAACGGATCTCTTGGTTCT Gnomoniopsis_smithogilvyi_BL166 TAAACAACTATAAATGAATCAAAACTTTTAACAACGGATCTCTTGGTTCT Gnomoniopsis_smithogilvyi_BL176 TAAACAACTATAAATGAATCAAAACTTTTAACAACGGATCTCTTGGTTCT Gnomoniopsis_castanea_Rb7_type TAAACAACTATAAATGAATCAAAACTTTTAACAACGGATCTCTTGGTTCT Gnomoniopsis_castanea_NZ11 TAAACAACTATAAATGAATCAAAACTTTTAACAACGGATCTCTTGGTTCT Gnomoniopsis_smithogilvyi_CBS130188 TAAACAACTATAAATGAATCAAAACTTTTAACAACGGATCTCTTGGTTCT Gnomoniopsis_smithogilvyi_CBS130190_type TAAACAACTATAAATGAATCAAAACTTTTAACAACGGATCTCTTGGTTCT Gnomoniopsis_castanea_CH4 TAAACAACTATAAATGAATCAAAACTTTTAACAACGGATCTCTTGGTTCT Gnomoniopsis_paraclavulata_CBS123202 TAAACAACTATAAATGAATCAAAACTTTTAACAACGGATCTCTTGGTTCT Gnomoniopsis_paraclavulata_AR4313 TAAACAACTATAAATGAATCAAAACTTTTAACAACGGATCTCTTGGTTCT Gnomoniopsis_alderdunense_CBS125680 TAAACAATTATAAATGAATCAAAACTTTTAACAACGGATCTCTTGGTTCT Gnomoniopsis_alderdunense_CBS125681 TAAACAATTATAAATGAATCAAAACTTTTAACAACGGATCTCTTGGTTCT Gnomoniopsis_guttulata_MS0312 TAAACAACTATAAATGAATCAAAACTTTTAACAACGGATCTCTTGGTTCT Gnomoniopsis_occulta_CBS125677 TAAACAACTATAAATGAATCAAAACTTTTAACAACGGATCTCTTGGTTCT Gnomoniopsis_occulta_CBS125678 TAAACAACTATAAATGAATCAAAACTTTTAACAACGGATCTCTTGGTTCT Gnomoniopsis_chamaemori_CBS804_79 TAAATAACTATAAATGAATCAAAACTTTTAACAACGGATCTCTTGGTTCT Gnomoniopsis_racemula_AR3892 TAAACAACTATAAATGAATCAAAACTTTTAACAACGGATCTCTTGGTTCT Gnomoniopsis_fructicola_CBS208_34 TAAACAACTATAAATGAATCAAAACTTTTAACAACGGATCTCTTGGTTCT Gnomoniopsis_fructicola_AR4275 TAAACAACTATAAATGAATCAAAACTTTTAACAACGGATCTCTTGGTTCT Gnomoniopsis_comari_CBS806_79 TAAACAACTATAAATGAATCAAAACTTTTAACAACGGATCTCTTGGTTCT Gnomoniopsis_comari_CBS807_79 TAAACAACTATAAATGAATCAAAACTTTTAACAACGGATCTCTTGGTTCT Gnomoniopsis_tormentillae_CBS904_79 TAAACAACTATAAATGAATCAAAACTTTTAACAACGGATCTCTTGGTTCT Gnomoniopsis_idaeicola_CBS125672 TAAACAACTATAAATGAATCAAAACTTTTAACAACGGATCTCTTGGTTCT Gnomoniopsis_idaeicola_CBS125674 TAAACAACTATAAATGAATCAAAACTTTTAACAACGGATCTCTTGGTTCT Gnomoniopsis_sanguisorbae_CBS858_79 TAAACAACTAAAAATGAATCAAAACTTTTAACAACGGATCTCTTGGTTCT Gnomoniopsis_sanguisorbae_CBS125299 TAAACAACTATAAATGAATCAAAACTTTTAACAACGGATCTCTTGGTTCT Gnomoniopsis_macounii_AR3866 TAAACAACTATAAATGAATCAAAACTTTTAACAACGGATCTCTTGGTTCT Apiognomonia_veneta_AR4184 TAAAAAAACATAAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCT Gnomoniopsis_smithogilvyi_BL165 GGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGA Gnomoniopsis_smithogilvyi_BL166 GGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGA Gnomoniopsis_smithogilvyi_BL176 GGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGA Gnomoniopsis_castanea_Rb7_type GGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGA Gnomoniopsis_castanea_NZ11 GGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGA Gnomoniopsis_smithogilvyi_CBS130188 GGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGA Gnomoniopsis_smithogilvyi_CBS130190_type GGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGA Gnomoniopsis_castanea_CH4 GGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGA Gnomoniopsis_paraclavulata_CBS123202 GGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGA Gnomoniopsis_paraclavulata_AR4313 GGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGA Gnomoniopsis_alderdunense_CBS125680 GGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGA Gnomoniopsis_alderdunense_CBS125681 GGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGA Gnomoniopsis_guttulata_MS0312 GGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGA Gnomoniopsis_occulta_CBS125677 GGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGA Gnomoniopsis_occulta_CBS125678 GGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGA Gnomoniopsis_chamaemori_CBS804_79 GGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGA Gnomoniopsis_racemula_AR3892 GGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGA Gnomoniopsis_fructicola_CBS208_34 GGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGA Gnomoniopsis_fructicola_AR4275 GGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGA Gnomoniopsis_comari_CBS806_79 GGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGA Gnomoniopsis_comari_CBS807_79 GGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGA Gnomoniopsis_tormentillae_CBS904_79 GGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGA Gnomoniopsis_idaeicola_CBS125672 GGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGA Gnomoniopsis_idaeicola_CBS125674 GGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGA Gnomoniopsis_sanguisorbae_CBS858_79 GGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGA Gnomoniopsis_sanguisorbae_CBS125299 GGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGA Gnomoniopsis_macounii_AR3866 GGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGA Apiognomonia_veneta_AR4184 GGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGA Gnomoniopsis_smithogilvyi_BL165 ATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTC Gnomoniopsis_smithogilvyi_BL166 ATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTC Gnomoniopsis_smithogilvyi_BL176 ATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTC Gnomoniopsis_castanea_Rb7_type ATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTC Gnomoniopsis_castanea_NZ11 ATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTC Gnomoniopsis_smithogilvyi_CBS130188 ATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTC Gnomoniopsis_smithogilvyi_CBS130190_type ATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTC Gnomoniopsis_castanea_CH4 ATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTC Gnomoniopsis_paraclavulata_CBS123202 ATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTC Gnomoniopsis_paraclavulata_AR4313 ATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTC Gnomoniopsis_alderdunense_CBS125680 ATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTC Gnomoniopsis_alderdunense_CBS125681 ATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTC Gnomoniopsis_guttulata_MS0312 ATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTC Gnomoniopsis_occulta_CBS125677 ATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTC Gnomoniopsis_occulta_CBS125678 ATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTC Gnomoniopsis_chamaemori_CBS804_79 ATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTC Gnomoniopsis_racemula_AR3892 ATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTC Gnomoniopsis_fructicola_CBS208_34 ATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTC Gnomoniopsis_fructicola_AR4275 ATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTC Gnomoniopsis_comari_CBS806_79 ATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTC Gnomoniopsis_comari_CBS807_79 ATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTC Gnomoniopsis_tormentillae_CBS904_79 ATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTC Gnomoniopsis_idaeicola_CBS125672 ATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTC Gnomoniopsis_idaeicola_CBS125674 ATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTC Gnomoniopsis_sanguisorbae_CBS858_79 ATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTC Gnomoniopsis_sanguisorbae_CBS125299 ATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTC Gnomoniopsis_macounii_AR3866 ATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTC Apiognomonia_veneta_AR4184 ATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGGTGGTATTC Gnomoniopsis_smithogilvyi_BL165 CAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAAACTTCGGTTT Gnomoniopsis_smithogilvyi_BL166 CAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAAACTTCGGTTT Gnomoniopsis_smithogilvyi_BL176 CAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAAACTTCGGTTT Gnomoniopsis_castanea_Rb7_type CAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAAACTTCGGTTT Gnomoniopsis_castanea_NZ11 CAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAAACTTCGGTTT Gnomoniopsis_smithogilvyi_CBS130188 CAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAAACTTCGGTTT Gnomoniopsis_smithogilvyi_CBS130190_type CAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAAACTTCGGTTT Gnomoniopsis_castanea_CH4 CAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAAACTTCGGTTT Gnomoniopsis_paraclavulata_CBS123202 CAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAAACTTCGGTTT Gnomoniopsis_paraclavulata_AR4313 CAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAAACCTCGGTTT Gnomoniopsis_alderdunense_CBS125680 CAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAAACCTCGGTTT Gnomoniopsis_alderdunense_CBS125681 CAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAAACCTCGGTTT Gnomoniopsis_guttulata_MS0312 CAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAAACCTCGGTTT Gnomoniopsis_occulta_CBS125677 CAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAAACCTCGGTTT Gnomoniopsis_occulta_CBS125678 CAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAAACCTCGGTTT Gnomoniopsis_chamaemori_CBS804_79 CAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAAACCTCGGTTT Gnomoniopsis_racemula_AR3892 CAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAAACTTCGGTTT Gnomoniopsis_fructicola_CBS208_34 CAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAAACTTCGGTTT Gnomoniopsis_fructicola_AR4275 CAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAAACTTCGGTTT Gnomoniopsis_comari_CBS806_79 CAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAAACCTCGGTTT Gnomoniopsis_comari_CBS807_79 CAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAAACCTCGGTTT Gnomoniopsis_tormentillae_CBS904_79 CAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAAACCTCGGTTT Gnomoniopsis_idaeicola_CBS125672 CAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAAACCTCGGTTT Gnomoniopsis_idaeicola_CBS125674 CAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAAACCTCGGTTT Gnomoniopsis_sanguisorbae_CBS858_79 CAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAAACCTCGGTTT Gnomoniopsis_sanguisorbae_CBS125299 CAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAAACCCCGGTTT Gnomoniopsis_macounii_AR3866 CAGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAAACCTCGGTTT Apiognomonia_veneta_AR4184 CACCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAAGCTT--GCTT Gnomoniopsis_smithogilvyi_BL165 TGGTGTTGGAGGAATAC-TTGTAAAA---GAGTACCCTCTGAAATTTAGT Gnomoniopsis_smithogilvyi_BL166 TGGTGTTGGAGGAATAC-TTGTAAAA---GAGTACCCTCTGAAATTTAGT Gnomoniopsis_smithogilvyi_BL176 TGGTGTTGGAGGAATAC-TTGTAAAA---GAGTACCCTCTGAAATTTAGT Gnomoniopsis_castanea_Rb7_type TGGTGTTGGAGGAATAC-TTGTAAAA---GAGTACCCTCTGAAATTTAGT Gnomoniopsis_castanea_NZ11 TGGTGTTGGAGGAATAC-TTGTAAAA---GAGTACCCTCTGAAATTTAGT Gnomoniopsis_smithogilvyi_CBS130188 TGGTGTTGGAGGAATAC-TTGTAAAA---GAGTACCCTCTGAAATTTAGT Gnomoniopsis_smithogilvyi_CBS130190_type TGGTGTTGGAGGAATAC-TTGTAAAA---GAGTACCCTCTGAAATTTAGT Gnomoniopsis_castanea_CH4 TGGTGTTGGAGGAATAC-TTGTAAAA---GAGTACCCTCTGAAATTTAGT Gnomoniopsis_paraclavulata_CBS123202 TGGTGTTGGAGGAATAC-TTGTAAAA---GAGTACCCTCTGAAATTTAGT Gnomoniopsis_paraclavulata_AR4313 TGGTGTTGGAGGAATAC-TTGTCAAA---GAGTACCCTCTGAAATTTAGT Gnomoniopsis_alderdunense_CBS125680 TGGTGTTGGAGGACTACGCAGTAAAAT--GCGTAGCCTCTGAAATTCAGT Gnomoniopsis_alderdunense_CBS125681 TGGTGTTGGAGGACTACGCAGTAAAAT--GCGTAGCCTCTGAAATTCAGT Gnomoniopsis_guttulata_MS0312 TGGTGTTGGAGGACTACGCAGTAAAAC--GCGTAGCCTCTGAAATTCAGT Gnomoniopsis_occulta_CBS125677 TGGTGTTGGAGGACTACGCGGTAAAAC--GCGTAGCCTCTGAAATTCAGT Gnomoniopsis_occulta_CBS125678 TGGTGTTGGAGGACTACGCGGTAAAAC--GCGTAGCCTCTGAAATTCAGT Gnomoniopsis_chamaemori_CBS804_79 TGGTGTTGGAGGACTACGCGGTAAAAC--GCGTAGCCTCTGAAATTCAGT Gnomoniopsis_racemula_AR3892 TGGTGTTGGAGGACTACGCAGTAACAT--GCGTAGCCTCTGAAATTCAGT Gnomoniopsis_fructicola_CBS208_34 TGGTGTTGGAGGACTACGCTGTAAAAC--GCGTAGCCTCCCAAATTCAGT Gnomoniopsis_fructicola_AR4275 TGGTGTTGGAGGACTACGCTGTAAAAC--GCGTAGCCTCCCAAATTCAGT Gnomoniopsis_comari_CBS806_79 TGGTGTTGGAGGACTACGCGGTAAAAC--GCGTAGCCTCTGAAATTCAGT Gnomoniopsis_comari_CBS807_79 TGGTGTTGGAGGACTACGCGGTAAAAC--GCGTAGCCTCTGAAATTCAGT Gnomoniopsis_tormentillae_CBS904_79 TGGTGTTGGAGGACTACGCAGTAAAAC--GCGTAGCCTCTGAAATTCAGT Gnomoniopsis_idaeicola_CBS125672 TGGTGTTGGAGGACTACGCTGCTCACCCAGCGTAGCCTCTGAAATACAGT Gnomoniopsis_idaeicola_CBS125674 TGGTGTTGGAGGACTACGCTGCTCACCCAGCGTAGCCTCTGAAATACAGT Gnomoniopsis_sanguisorbae_CBS858_79 TGGTGTTGGAGGACTACGCGGTAAAAC--GCGTAGCCTCTGAAATGTAGT Gnomoniopsis_sanguisorbae_CBS125299 TGGTGTTGGAGGACTACGCGGTAAAAC--GCGTAGCCTCTGAAATGTAGT Gnomoniopsis_macounii_AR3866 TGGTGTTGGAGGACTACGCTGTAAAAA--GCGTAGCCTCTGAAATTCAGT Apiognomonia_veneta_AR4184 TGGTGTTGGAGGAATACCCAGTAAAAC--GGGTACCCTCTGAAATTTAGT Gnomoniopsis_smithogilvyi_BL165 GGCGGGCTCGCTAGAATTTTGAGCGTAGTAATTTT-ATACCTCGTTTATA Gnomoniopsis_smithogilvyi_BL166 GGCGGGCTCGCTAGAATTTTGAGCGTAGTAATTTT-ATACCTCGTTTATA Gnomoniopsis_smithogilvyi_BL176 GGCGGGCTCGCTAGAATTTTGAGCGTAGTAATTTT-ATACCTCGTTTATA Gnomoniopsis_castanea_Rb7_type GGCGGGCTCGCTAGAATTTTGAGCGTAGTAATTTT-ATACCTCGTTTATA Gnomoniopsis_castanea_NZ11 GGCGGGCTCGCTAGAATTTTGAGCGTAGTAATTTT-ATACCTCGTTTATA Gnomoniopsis_smithogilvyi_CBS130188 GGCGGGCTCGCTAGAATTTTGAGCGTAGTAATTTT-ATACCTCGTTTATA Gnomoniopsis_smithogilvyi_CBS130190_type GGCGGGCTCGCTAGAATTTTGAGCGTAGTAATTTT-ATACCTCGTTTATA Gnomoniopsis_castanea_CH4 GGCGGGCTCGCTAGAATTTTGAGCGTAGTAATTTT-ATACCTCGTTTATA Gnomoniopsis_paraclavulata_CBS123202 GGCGGGCTCGCTAGAATTTTGAGCGTAGTAATTTT-ATACCTCGTTTATA Gnomoniopsis_paraclavulata_AR4313 GGCGGGCTCGCTAGAATTTTGAGCGTAGTAATTTTCATACCTCGTTTATA Gnomoniopsis_alderdunense_CBS125680 GGCGGGCTCGCTAGAATTTTGAGCGTAGTAATTT--ATACCTCGTTTGTA Gnomoniopsis_alderdunense_CBS125681 GGCGGGCTCGCTAGAATTTTGAGCGTAGTAATTT--ATACCTCGTTTGTA Gnomoniopsis_guttulata_MS0312 GGCGGGCTCGCTAGAATTTTGAGCGTAGTAATTT--ATACCTCGTTTGTA Gnomoniopsis_occulta_CBS125677 GGCGGGCTCGCTAGAATTTTGAGCGTAGTAATTT--GTACCTCGTTTGTA Gnomoniopsis_occulta_CBS125678 GGCGGGCTCGCTAGAATTTTGAGCGTAGTAATTT--GTACCTCGTTTGTA Gnomoniopsis_chamaemori_CBS804_79 GGCGGGCTCGCTAGAATTTTGAGCGTAGTAATCT--ATACCTCGTTTGTA Gnomoniopsis_racemula_AR3892 GGCGGGCTCGCTAGAATTTTGAGCGTAGTAATTT--ATACCTCGTTTGTA Gnomoniopsis_fructicola_CBS208_34 GGCGGGCTCGCTAGAATTTTGAGCGTAGTAATTT--ATACCTCGTTTGTA Gnomoniopsis_fructicola_AR4275 GGCGGGCTCGCTAGAATTTTGAGCGTAGTAATTT--ATACCTCGTTTGTA Gnomoniopsis_comari_CBS806_79 GGCGGGCTCGCTAGAATTTTGAGCGTAGTAATTT--ATACCTCGTTTGTA Gnomoniopsis_comari_CBS807_79 GGCGGGCTCGCTAGAATTTTGAGCGTAGTAATTT--ATACCTCGTTTGTA Gnomoniopsis_tormentillae_CBS904_79 GGCGGGCTCGCTAGAATTTTGAGCGTAGTAATTT--ATACCTCGTTTGTA Gnomoniopsis_idaeicola_CBS125672 GGCGGGCTCGCTAGAATTTTGAGCGTAGTAATTT--ATACCTCGTTTGTA Gnomoniopsis_idaeicola_CBS125674 GGCGGGCTCGCTAGAATTTTGAGCGTAGTAATTT--ATACCTCGTTTGTA Gnomoniopsis_sanguisorbae_CBS858_79 GGCGGGCTCGCTAGAATTTTGAGCGTAGTAATTT--ATACCTCGTTTGTG Gnomoniopsis_sanguisorbae_CBS125299 GGCGGGCTCGCTAGAATTTTGAGCGTAGTAATTT--ATACCTCGTTTGTG Gnomoniopsis_macounii_AR3866 GGCGGGCTCGCTAGAATTTTGAGCGTAGTAATTT--ATACCTCGTTTGTA Apiognomonia_veneta_AR4184 GGCGGGCTCGCTAGAATTTTGAGCGTAGTAATTT---TACCTCGTTTTTA Gnomoniopsis_smithogilvyi_BL165 AAGACTGGCGGT-TGCT-CTTGCCGTAAAACCCCCCAACTTTCTGAAAAT Gnomoniopsis_smithogilvyi_BL166 AAGACTGGCGGT-TGCT-CTTGCCGTAAAACCCCCCAACTTTCTGAAAAT Gnomoniopsis_smithogilvyi_BL176 AAGACTGGCGGT-TGCT-CTTGCCGTAAAACCCCCCAACTTTCTGAAAAT Gnomoniopsis_castanea_Rb7_type AAGACTGGCGGT-TGCT-CTTGCCGTAAAACCCCCCAACTTTCTGAAAAT Gnomoniopsis_castanea_NZ11 AAGACTGGCGGT-TGCT-CTTGCCGTAAAACCCCCCAACTTTCTGAAAAT Gnomoniopsis_smithogilvyi_CBS130188 AAGACTGGCGGT-TGCT-CTTGCCGTAAA--------------------- Gnomoniopsis_smithogilvyi_CBS130190_type AAGACTGGCGGT-TGCT-CTTGCCGTAAA--------------------- Gnomoniopsis_castanea_CH4 AAGACTGGCGGT-TGCT-CTTGCCGTAAAACCCCC--------------- Gnomoniopsis_paraclavulata_CBS123202 AAGACTAGCGGT-T-CT-CTTGCCGTAAAACCCCC--------------- Gnomoniopsis_paraclavulata_AR4313 AAGACTAGCGGTGCTTT-CTTGCCGTAAAACCCCCCAACTTTCTGA---- Gnomoniopsis_alderdunense_CBS125680 AAGACTAGTGATGCTTTTCTTGCCGTAAAACCCCC--------------- Gnomoniopsis_alderdunense_CBS125681 AAGACTAGTGATGCTTTTCTTGCCGTAAAACCCCC--------------- Gnomoniopsis_guttulata_MS0312 AAGACTAGTGATGCTTTTCTTGCCGTAAAACCCCC-CAACTTTCTGA--- Gnomoniopsis_occulta_CBS125677 AAGACTAGTGATGCTTT-CTTGCCGTAAAACCCCC--------------- Gnomoniopsis_occulta_CBS125678 AAGACTAGTGATGCTTT-CTTGCCGTAAAACCCCC--------------- Gnomoniopsis_chamaemori_CBS804_79 AAGACTAGTGATGCTTT-CTTGCCGTAAAACCCCC--------------- Gnomoniopsis_racemula_AR3892 AAGACTAGTGATGTT---CTTGCCGTAAAACCCCC-AACTTCCTGA---- Gnomoniopsis_fructicola_CBS208_34 AAGACTAGTGATGTTT--CTTGCCGTAAAACCCCC-AACTTTCTGA---- Gnomoniopsis_fructicola_AR4275 AAGACTAGTGATGTTT--CTTGCCGTAAAACCCCC-AACTTTCTGA---- Gnomoniopsis_comari_CBS806_79 AAGACTAGTGACGTT---CTTGCCGTAAAACCCCC-AACTTTCTGA---- Gnomoniopsis_comari_CBS807_79 AAGACTAGTGACGTT---CTTGCCGTAAAACCCCC-AACTTTCTGA---- Gnomoniopsis_tormentillae_CBS904_79 AAGACTAGTGATGTT---CTTGCCGTAAAACCCCC-AACTTTCTGA---- Gnomoniopsis_idaeicola_CBS125672 AAGACTAGCGGTGTCT--CTTGCCGTAAAACCCCC--------------- Gnomoniopsis_idaeicola_CBS125674 AAGACTAGCGGTGTCT--CTTGCCGTAAAACCCCC--------------- Gnomoniopsis_sanguisorbae_CBS858_79 AAGACTAGTGATGATC--CTTGCCGTAAAACCCCC--------------- Gnomoniopsis_sanguisorbae_CBS125299 AAGACTAGTGATGTTT--CTTGCCGTAAAACCCCC--------------- Gnomoniopsis_macounii_AR3866 AAGACTAGTGATGTTT--CTTGCCGTAAAACCCCCCAACTTTCTGA---- Apiognomonia_veneta_AR4184 AAGACTAGTCGGACTT--CTTGCCGTAAAACCCCC-AACTTTCTGAAAAT Gnomoniopsis_smithogilvyi_BL165 TGACCTCGG-AT----------- Gnomoniopsis_smithogilvyi_BL166 TGACCTCGG-AT----------- Gnomoniopsis_smithogilvyi_BL176 TGACCTCGG-AT----------- Gnomoniopsis_castanea_Rb7_type TGACCTCGGGATCAGGGTAGGAT Gnomoniopsis_castanea_NZ11 TGACCTCGG-ATCAGG-TAGGA- Gnomoniopsis_smithogilvyi_CBS130188 ----------------------- Gnomoniopsis_smithogilvyi_CBS130190_type ----------------------- Gnomoniopsis_castanea_CH4 ----------------------- Gnomoniopsis_paraclavulata_CBS123202 ----------------------- Gnomoniopsis_paraclavulata_AR4313 ----------------------- Gnomoniopsis_alderdunense_CBS125680 ----------------------- Gnomoniopsis_alderdunense_CBS125681 ----------------------- Gnomoniopsis_guttulata_MS0312 ----------------------- Gnomoniopsis_occulta_CBS125677 ----------------------- Gnomoniopsis_occulta_CBS125678 ----------------------- Gnomoniopsis_chamaemori_CBS804_79 ----------------------- Gnomoniopsis_racemula_AR3892 ----------------------- Gnomoniopsis_fructicola_CBS208_34 ----------------------- Gnomoniopsis_fructicola_AR4275 ----------------------- Gnomoniopsis_comari_CBS806_79 ----------------------- Gnomoniopsis_comari_CBS807_79 ----------------------- Gnomoniopsis_tormentillae_CBS904_79 ----------------------- Gnomoniopsis_idaeicola_CBS125672 ----------------------- Gnomoniopsis_idaeicola_CBS125674 ----------------------- Gnomoniopsis_sanguisorbae_CBS858_79 ----------------------- Gnomoniopsis_sanguisorbae_CBS125299 ----------------------- Gnomoniopsis_macounii_AR3866 ----------------------- Apiognomonia_veneta_AR4184 TGACCT----------------- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = Gnomoniopsis_Character_Matrix) = unord: 1 - 573; END; BEGIN CODONS; CODESET * UNTITLED (CHARACTERS = Gnomoniopsis_Character_Matrix) = universal: 1 - 573; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = Gnomoniopsis_Character_Matrix) = 'Jukes-Cantor': 1 - 573; END; BEGIN TREES; Title Gnomoniopsis_MP_trees; LINK Taxa = Gnomoniopsis_Taxa; TRANSLATE [0] 1 Gnomoniopsis_smithogilvyi_BL165, [1] 2 Gnomoniopsis_smithogilvyi_BL166, [2] 3 Gnomoniopsis_smithogilvyi_BL176, [3] 4 Gnomoniopsis_castanea_Rb7_type, [4] 5 Gnomoniopsis_castanea_NZ11, [5] 6 Gnomoniopsis_smithogilvyi_CBS130188, [6] 7 Gnomoniopsis_smithogilvyi_CBS130190_type, [7] 8 Gnomoniopsis_castanea_CH4, [8] 9 Gnomoniopsis_paraclavulata_CBS123202, [9] 10 Gnomoniopsis_paraclavulata_AR4313, [10] 11 Gnomoniopsis_alderdunense_CBS125680, [11] 12 Gnomoniopsis_alderdunense_CBS125681, [12] 13 Gnomoniopsis_guttulata_MS0312, [13] 14 Gnomoniopsis_occulta_CBS125677, [14] 15 Gnomoniopsis_occulta_CBS125678, [15] 16 Gnomoniopsis_chamaemori_CBS804_79, [16] 17 Gnomoniopsis_racemula_AR3892, [17] 18 Gnomoniopsis_fructicola_CBS208_34, [18] 19 Gnomoniopsis_fructicola_AR4275, [19] 20 Gnomoniopsis_comari_CBS806_79, [20] 21 Gnomoniopsis_comari_CBS807_79, [21] 22 Gnomoniopsis_tormentillae_CBS904_79, [22] 23 Gnomoniopsis_idaeicola_CBS125672, [23] 24 Gnomoniopsis_idaeicola_CBS125674, [24] 25 Gnomoniopsis_sanguisorbae_CBS858_79, [25] 26 Gnomoniopsis_sanguisorbae_CBS125299, [26] 27 Gnomoniopsis_macounii_AR3866, [27] 28 Apiognomonia_veneta_AR4184; TREE PAUP_1 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):14,9:9):5,10:14):0.0,((((((((11:0.0,12:0.0):3,17:6):1,(13:0.0,((14:0.0,15:0.0):2,16:4):2):1):6,27:9):1,((20:0.0,21:0.0):3,22:0.0):2):3,(18:0.0,19:0.0):6):3,(25:6,26:3):8):8,(23:0.0,24:0.0):10):11,28:33); TREE PAUP_2 = (((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):14,9:6):2,(10:8,((((((((11:0.0,12:0.0):3,17:6):1,(13:0.0,((14:0.0,15:0.0):2,16:4):2):1):6,27:9):1,((20:0.0,21:0.0):3,22:0.0):2):3,(18:0.0,19:0.0):6):3,(25:6,26:3):8):7,(23:0.0,24:0.0):11):12):9,28:31); TREE PAUP_3 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):14,9:9):5,10:14):0.0,((((((((11:0.0,12:0.0):3,17:6):1,(13:0.0,((14:0.0,15:0.0):2,16:4):2):1):5,((20:0.0,21:0.0):3,22:0.0):2):3,27:8):3,(18:0.0,19:0.0):6):3,(25:6,26:3):8):8,(23:0.0,24:0.0):10):11,28:33); TREE PAUP_4 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):14,9:9):5,10:14):0.0,((((((((11:0.0,12:0.0):3,(13:0.0,((14:0.0,15:0.0):2,16:4):2):2):1,17:5):6,27:8):2,((20:0.0,21:0.0):3,22:0.0):2):3,(18:0.0,19:0.0):6):3,(25:6,26:3):8):8,(23:0.0,24:0.0):10):11,28:33); TREE PAUP_5 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):14,9:9):5,10:14):0.0,(((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):2,((14:0.0,15:0.0):2,16:4):0.0):6,27:9):1,((20:0.0,21:0.0):2,22:1):2):2,(18:0.0,19:0.0):7):3,(25:6,26:3):7):9,(23:0.0,24:0.0):10):11,28:33); TREE PAUP_6 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):14,9:9):5,10:14):0.0,(((((((11:0.0,12:0.0):3,17:6):1,(13:0.0,((14:0.0,15:0.0):2,16:4):2):1):5,(((20:0.0,21:0.0):3,22:0.0):3,27:9):1):3,(18:0.0,19:0.0):6):3,(25:6,26:3):8):8,(23:0.0,24:0.0):10):11,28:33); TREE PAUP_7 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):13,9:10):2,((((((((11:0.0,12:0.0):3,17:6):1,(13:0.0,((14:0.0,15:0.0):2,16:4):2):1):6,27:9):1,((20:0.0,21:0.0):3,22:0.0):2):3,(18:0.0,19:0.0):6):3,(25:6,26:3):8):8,(23:0.0,24:0.0):10):15):0.0,10:11,28:32); TREE PAUP_8 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):14,9:9):5,10:14):0.0,(((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):1,((14:0.0,15:0.0):2,16:4):1):5,((20:0.0,21:0.0):3,22:0.0):2):3,27:8):3,(18:0.0,19:0.0):6):3,(25:6,26:3):8):8,(23:0.0,24:0.0):10):11,28:33); TREE PAUP_9 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):14,9:9):5,10:14):0.0,((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):2,((14:0.0,15:0.0):2,16:4):0.0):4,(((20:0.0,21:0.0):2,22:1):3,27:9):2):2,(18:0.0,19:0.0):6):4,(25:6,26:3):7):9,(23:0.0,24:0.0):10):11,28:33); TREE PAUP_10 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):14,9:9):5,10:14):0.0,((((((((11:0.0,12:0.0):3,(13:0.0,((14:0.0,15:0.0):2,16:4):2):2):1,17:5):5,((20:0.0,21:0.0):3,22:0.0):2):3,27:8):3,(18:0.0,19:0.0):6):3,(25:6,26:3):8):8,(23:0.0,24:0.0):10):11,28:33); TREE PAUP_11 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):14,9:9):5,10:14):0.0,(((((((11:0.0,12:0.0):3,(13:0.0,((14:0.0,15:0.0):2,16:4):2):2):1,17:5):5,(((20:0.0,21:0.0):3,22:0.0):3,27:9):1):3,(18:0.0,19:0.0):6):3,(25:6,26:3):8):8,(23:0.0,24:0.0):10):11,28:33); TREE PAUP_12 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):14,9:9):5,10:14):0.0,(((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):2,(14:0.0,15:0.0):2,16:4):6,27:9):1,((20:0.0,21:0.0):2,22:1):2):2,(18:0.0,19:0.0):7):3,(25:6,26:3):7):9,(23:0.0,24:0.0):10):11,28:33); TREE PAUP_13 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):14,9:9):5,10:14):0.0,((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):2,((14:0.0,15:0.0):2,16:4):0.0):4,(18:0.0,19:0.0):7):2,(((20:0.0,21:0.0):2,22:1):2,27:10):1):4,(25:6,26:3):7):9,(23:0.0,24:0.0):10):11,28:33); TREE PAUP_14 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):14,9:9):5,10:14):0.0,(((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):2,(14:0.0,15:0.0):2,16:4):5,((20:0.0,21:0.0):2,22:1):2):3,27:8):3,(18:0.0,19:0.0):6):3,(25:6,26:3):8):8,(23:0.0,24:0.0):10):11,28:33); TREE PAUP_15 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):14,9:9):5,10:14):0.0,((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):2,(14:0.0,15:0.0):2,16:4):4,(((20:0.0,21:0.0):2,22:1):3,27:9):2):2,(18:0.0,19:0.0):6):4,(25:6,26:3):7):9,(23:0.0,24:0.0):10):11,28:33); TREE PAUP_16 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):14,9:9):5,10:14):0.0,((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):2,(14:0.0,15:0.0):2,16:4):4,(18:0.0,19:0.0):7):2,(((20:0.0,21:0.0):2,22:1):2,27:10):1):4,(25:6,26:3):7):9,(23:0.0,24:0.0):10):11,28:33); TREE PAUP_17 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):14,9:9):5,10:14):0.0,((((((((11:0.0,12:0.0):3,17:6):1,(13:0.0,((14:0.0,15:0.0):2,16:4):2):1):5,((20:0.0,21:0.0):3,22:0.0):2):2,(18:0.0,19:0.0):7):2,27:9):3,(25:6,26:3):8):8,(23:0.0,24:0.0):10):11,28:33); TREE PAUP_18 = (((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):11,(10:8,((((((((11:0.0,12:0.0):3,17:6):1,(13:0.0,((14:0.0,15:0.0):2,16:4):2):1):6,27:9):1,((20:0.0,21:0.0):3,22:0.0):2):3,(18:0.0,19:0.0):6):3,(25:6,26:3):8):7,(23:0.0,24:0.0):11):12):12):2,9:1,28:33); TREE PAUP_19 = (((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):14,9:6):2,(10:8,(((((((11:0.0,12:0.0):3,17:6):1,(13:0.0,((14:0.0,15:0.0):2,16:4):2):1):5,(((20:0.0,21:0.0):3,22:0.0):3,27:9):1):3,(18:0.0,19:0.0):6):3,(25:6,26:3):8):7,(23:0.0,24:0.0):11):12):9,28:31); TREE PAUP_20 = (((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):14,9:6):2,(10:8,((((((((11:0.0,12:0.0):3,17:6):1,(13:0.0,((14:0.0,15:0.0):2,16:4):2):1):5,((20:0.0,21:0.0):3,22:0.0):2):2,(18:0.0,19:0.0):7):2,27:9):3,(25:6,26:3):8):7,(23:0.0,24:0.0):11):12):9,28:31); TREE PAUP_21 = (((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):14,9:6):2,(10:8,((((((((11:0.0,12:0.0):3,17:6):1,(13:0.0,((14:0.0,15:0.0):2,16:4):2):1):5,((20:0.0,21:0.0):3,22:0.0):2):3,27:8):3,(18:0.0,19:0.0):6):3,(25:6,26:3):8):7,(23:0.0,24:0.0):11):12):9,28:31); TREE PAUP_22 = (((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):14,9:6):2,(10:8,(((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):1,((14:0.0,15:0.0):2,16:4):1):5,((20:0.0,21:0.0):3,22:0.0):2):3,27:8):3,(18:0.0,19:0.0):6):3,(25:6,26:3):8):7,(23:0.0,24:0.0):11):12):9,28:31); TREE PAUP_23 = (((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):14,9:6):2,(10:8,((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):2,((14:0.0,15:0.0):2,16:4):0.0):4,(((20:0.0,21:0.0):2,22:1):3,27:9):2):2,(18:0.0,19:0.0):6):4,(25:6,26:3):7):8,(23:0.0,24:0.0):11):12):9,28:31); TREE PAUP_24 = (((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):14,9:6):2,(10:8,((((((((11:0.0,12:0.0):3,(13:0.0,((14:0.0,15:0.0):2,16:4):2):2):1,17:5):5,((20:0.0,21:0.0):3,22:0.0):2):3,27:8):3,(18:0.0,19:0.0):6):3,(25:6,26:3):8):7,(23:0.0,24:0.0):11):12):9,28:31); TREE PAUP_25 = (((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):14,9:6):2,(10:8,(((((((11:0.0,12:0.0):3,(13:0.0,((14:0.0,15:0.0):2,16:4):2):2):1,17:5):5,(((20:0.0,21:0.0):3,22:0.0):3,27:9):1):3,(18:0.0,19:0.0):6):3,(25:6,26:3):8):7,(23:0.0,24:0.0):11):12):9,28:31); TREE PAUP_26 = (((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):14,9:6):2,(10:8,(((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):2,(14:0.0,15:0.0):2,16:4):6,27:9):1,((20:0.0,21:0.0):2,22:1):2):2,(18:0.0,19:0.0):7):3,(25:6,26:3):7):8,(23:0.0,24:0.0):11):12):9,28:31); TREE PAUP_27 = (((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):14,9:6):2,(10:8,((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):2,((14:0.0,15:0.0):2,16:4):0.0):4,(18:0.0,19:0.0):7):2,(((20:0.0,21:0.0):2,22:1):2,27:10):1):4,(25:6,26:3):7):8,(23:0.0,24:0.0):11):12):9,28:31); TREE PAUP_28 = (((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):14,9:6):2,(10:8,(((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):2,(14:0.0,15:0.0):2,16:4):5,((20:0.0,21:0.0):2,22:1):2):3,27:8):3,(18:0.0,19:0.0):6):3,(25:6,26:3):8):7,(23:0.0,24:0.0):11):12):9,28:31); TREE PAUP_29 = (((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):14,9:6):2,(10:8,((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):2,(14:0.0,15:0.0):2,16:4):4,(((20:0.0,21:0.0):2,22:1):3,27:9):2):2,(18:0.0,19:0.0):6):4,(25:6,26:3):7):8,(23:0.0,24:0.0):11):12):9,28:31); TREE PAUP_30 = (((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):14,9:6):2,(10:8,((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):2,(14:0.0,15:0.0):2,16:4):4,(18:0.0,19:0.0):7):2,(((20:0.0,21:0.0):2,22:1):2,27:10):1):4,(25:6,26:3):7):8,(23:0.0,24:0.0):11):12):9,28:31); TREE PAUP_31 = (((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):14,9:6):2,(10:8,(((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):2,((14:0.0,15:0.0):2,16:4):0.0):6,27:9):1,((20:0.0,21:0.0):2,22:1):2):2,(18:0.0,19:0.0):7):3,(25:6,26:3):7):8,(23:0.0,24:0.0):11):12):9,28:31); TREE PAUP_32 = (((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):14,9:6):2,(10:8,((((((((11:0.0,12:0.0):3,(13:0.0,((14:0.0,15:0.0):2,16:4):2):2):1,17:5):6,27:8):2,((20:0.0,21:0.0):3,22:0.0):2):3,(18:0.0,19:0.0):6):3,(25:6,26:3):8):7,(23:0.0,24:0.0):11):12):9,28:31); TREE PAUP_33 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):13,9:10):2,((((((((11:0.0,12:0.0):3,17:6):1,(13:0.0,((14:0.0,15:0.0):2,16:4):2):1):5,((20:0.0,21:0.0):3,22:0.0):2):3,27:8):3,(18:0.0,19:0.0):6):3,(25:6,26:3):8):8,(23:0.0,24:0.0):10):15):0.0,10:11,28:32); TREE PAUP_34 = (((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):11,(10:8,((((((((11:0.0,12:0.0):3,17:6):1,(13:0.0,((14:0.0,15:0.0):2,16:4):2):1):5,((20:0.0,21:0.0):3,22:0.0):2):3,27:8):3,(18:0.0,19:0.0):6):3,(25:6,26:3):8):7,(23:0.0,24:0.0):11):12):12):2,9:1,28:33); TREE PAUP_35 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):14,9:9):5,10:14):0.0,((((((((11:0.0,12:0.0):3,(13:0.0,((14:0.0,15:0.0):2,16:4):2):2):1,17:5):5,((20:0.0,21:0.0):3,22:0.0):2):2,(18:0.0,19:0.0):7):2,27:9):3,(25:6,26:3):8):8,(23:0.0,24:0.0):10):11,28:33); TREE PAUP_36 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):13,9:10):2,((((((((11:0.0,12:0.0):3,(13:0.0,((14:0.0,15:0.0):2,16:4):2):2):1,17:5):6,27:8):2,((20:0.0,21:0.0):3,22:0.0):2):3,(18:0.0,19:0.0):6):3,(25:6,26:3):8):8,(23:0.0,24:0.0):10):15):0.0,10:11,28:32); TREE PAUP_37 = (((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):11,(10:8,((((((((11:0.0,12:0.0):3,(13:0.0,((14:0.0,15:0.0):2,16:4):2):2):1,17:5):6,27:8):2,((20:0.0,21:0.0):3,22:0.0):2):3,(18:0.0,19:0.0):6):3,(25:6,26:3):8):7,(23:0.0,24:0.0):11):12):12):2,9:1,28:33); TREE PAUP_38 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):14,9:9):5,10:14):0.0,(((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):1,((14:0.0,15:0.0):2,16:4):1):4,((20:0.0,21:0.0):3,22:0.0):3):2,(18:0.0,19:0.0):6):3,27:9):3,(25:6,26:3):8):8,(23:0.0,24:0.0):10):11,28:33); TREE PAUP_39 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):13,9:10):2,(((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):2,((14:0.0,15:0.0):2,16:4):0.0):6,27:9):1,((20:0.0,21:0.0):2,22:1):2):2,(18:0.0,19:0.0):7):3,(25:6,26:3):7):9,(23:0.0,24:0.0):10):15):0.0,10:11,28:32); TREE PAUP_40 = (((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):11,(10:8,(((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):2,((14:0.0,15:0.0):2,16:4):0.0):6,27:9):1,((20:0.0,21:0.0):2,22:1):2):2,(18:0.0,19:0.0):7):3,(25:6,26:3):7):8,(23:0.0,24:0.0):11):12):12):2,9:1,28:33); TREE PAUP_41 = 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((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):13,9:10):2,(((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):2,(14:0.0,15:0.0):2,16:4):5,((20:0.0,21:0.0):2,22:1):2):3,27:8):3,(18:0.0,19:0.0):6):3,(25:6,26:3):8):8,(23:0.0,24:0.0):10):15):0.0,10:11,28:32); TREE PAUP_51 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):13,9:10):2,((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):2,(14:0.0,15:0.0):2,16:4):4,(((20:0.0,21:0.0):2,22:1):3,27:9):2):2,(18:0.0,19:0.0):6):4,(25:6,26:3):7):9,(23:0.0,24:0.0):10):15):0.0,10:11,28:32); TREE PAUP_52 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):13,9:10):2,((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):2,(14:0.0,15:0.0):2,16:4):4,(18:0.0,19:0.0):7):2,(((20:0.0,21:0.0):2,22:1):2,27:10):1):4,(25:6,26:3):7):9,(23:0.0,24:0.0):10):15):0.0,10:11,28:32); TREE PAUP_53 = 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(((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):11,(10:8,((((((((11:0.0,12:0.0):3,(13:0.0,((14:0.0,15:0.0):2,16:4):2):2):1,17:5):5,((20:0.0,21:0.0):3,22:0.0):2):3,27:8):3,(18:0.0,19:0.0):6):3,(25:6,26:3):8):7,(23:0.0,24:0.0):11):12):12):2,9:1,28:33); TREE PAUP_57 = (((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):11,(10:8,(((((((11:0.0,12:0.0):3,(13:0.0,((14:0.0,15:0.0):2,16:4):2):2):1,17:5):5,(((20:0.0,21:0.0):3,22:0.0):3,27:9):1):3,(18:0.0,19:0.0):6):3,(25:6,26:3):8):7,(23:0.0,24:0.0):11):12):12):2,9:1,28:33); TREE PAUP_58 = (((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):11,(10:8,((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):2,((14:0.0,15:0.0):2,16:4):0.0):4,(18:0.0,19:0.0):7):2,(((20:0.0,21:0.0):2,22:1):2,27:10):1):4,(25:6,26:3):7):8,(23:0.0,24:0.0):11):12):12):2,9:1,28:33); TREE PAUP_59 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):14,9:9):5,10:14):0.0,(((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):2,(14:0.0,15:0.0):2,16:4):4,(18:0.0,19:0.0):7):2,((20:0.0,21:0.0):2,22:1):2):2,27:9):4,(25:6,26:3):7):9,(23:0.0,24:0.0):10):11,28:33); TREE PAUP_60 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):14,9:9):5,10:14):0.0,(((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):2,(14:0.0,15:0.0):2,16:4):4,((20:0.0,21:0.0):2,22:1):3):2,(18:0.0,19:0.0):6):3,27:9):3,(25:6,26:3):8):8,(23:0.0,24:0.0):10):11,28:33); TREE PAUP_61 = (((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):11,(10:8,((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):2,(14:0.0,15:0.0):2,16:4):4,(((20:0.0,21:0.0):2,22:1):3,27:9):2):2,(18:0.0,19:0.0):6):4,(25:6,26:3):7):8,(23:0.0,24:0.0):11):12):12):2,9:1,28:33); TREE PAUP_62 = (((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):11,(10:8,((((((((11:0.0,12:0.0):3,17:6):1,(13:0.0,((14:0.0,15:0.0):2,16:4):2):1):5,((20:0.0,21:0.0):3,22:0.0):2):2,(18:0.0,19:0.0):7):2,27:9):3,(25:6,26:3):8):7,(23:0.0,24:0.0):11):12):12):2,9:1,28:33); TREE PAUP_63 = (((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):11,(10:8,(((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):2,(14:0.0,15:0.0):2,16:4):6,27:9):1,((20:0.0,21:0.0):2,22:1):2):2,(18:0.0,19:0.0):7):3,(25:6,26:3):7):8,(23:0.0,24:0.0):11):12):12):2,9:1,28:33); TREE PAUP_64 = (((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):11,(10:8,(((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):2,(14:0.0,15:0.0):2,16:4):5,((20:0.0,21:0.0):2,22:1):2):3,27:8):3,(18:0.0,19:0.0):6):3,(25:6,26:3):8):7,(23:0.0,24:0.0):11):12):12):2,9:1,28:33); TREE PAUP_65 = 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((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):13,9:10):2,((((((((11:0.0,12:0.0):3,(13:0.0,((14:0.0,15:0.0):2,16:4):2):2):1,17:5):5,((20:0.0,21:0.0):3,22:0.0):2):2,(18:0.0,19:0.0):7):2,27:9):3,(25:6,26:3):8):8,(23:0.0,24:0.0):10):15):0.0,10:11,28:32); TREE PAUP_72 = (((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):11,(10:8,((((((((11:0.0,12:0.0):3,(13:0.0,((14:0.0,15:0.0):2,16:4):2):2):1,17:5):5,((20:0.0,21:0.0):3,22:0.0):2):2,(18:0.0,19:0.0):7):2,27:9):3,(25:6,26:3):8):7,(23:0.0,24:0.0):11):12):12):2,9:1,28:33); TREE PAUP_73 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):13,9:10):2,(((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):1,((14:0.0,15:0.0):2,16:4):1):4,((20:0.0,21:0.0):3,22:0.0):3):2,(18:0.0,19:0.0):6):3,27:9):3,(25:6,26:3):8):8,(23:0.0,24:0.0):10):15):0.0,10:11,28:32); TREE PAUP_74 = (((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):11,(10:8,(((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):1,((14:0.0,15:0.0):2,16:4):1):4,((20:0.0,21:0.0):3,22:0.0):3):2,(18:0.0,19:0.0):6):3,27:9):3,(25:6,26:3):8):7,(23:0.0,24:0.0):11):12):12):2,9:1,28:33); TREE PAUP_75 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):13,9:10):2,(((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):2,((14:0.0,15:0.0):2,16:4):0.0):4,(18:0.0,19:0.0):7):2,((20:0.0,21:0.0):2,22:1):2):2,27:9):4,(25:6,26:3):7):9,(23:0.0,24:0.0):10):15):0.0,10:11,28:32); TREE PAUP_76 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):13,9:10):2,(((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):2,(14:0.0,15:0.0):2,16:4):4,((20:0.0,21:0.0):2,22:1):3):2,(18:0.0,19:0.0):6):3,27:9):3,(25:6,26:3):8):8,(23:0.0,24:0.0):10):15):0.0,10:11,28:32); TREE PAUP_77 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):13,9:10):2,(((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):2,(14:0.0,15:0.0):2,16:4):4,(18:0.0,19:0.0):7):2,((20:0.0,21:0.0):2,22:1):2):2,27:9):4,(25:6,26:3):7):9,(23:0.0,24:0.0):10):15):0.0,10:11,28:32); TREE PAUP_78 = (((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):11,(10:8,(((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):2,((14:0.0,15:0.0):2,16:4):0.0):4,(18:0.0,19:0.0):7):2,((20:0.0,21:0.0):2,22:1):2):2,27:9):4,(25:6,26:3):7):8,(23:0.0,24:0.0):11):12):12):2,9:1,28:33); TREE PAUP_79 = (((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):11,(10:8,(((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):2,(14:0.0,15:0.0):2,16:4):4,((20:0.0,21:0.0):2,22:1):3):2,(18:0.0,19:0.0):6):3,27:9):3,(25:6,26:3):8):7,(23:0.0,24:0.0):11):12):12):2,9:1,28:33); TREE PAUP_80 = (((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0):11,(10:8,(((((((((11:0.0,12:0.0):3,17:6):2,13:0.0):2,(14:0.0,15:0.0):2,16:4):4,(18:0.0,19:0.0):7):2,((20:0.0,21:0.0):2,22:1):2):2,27:9):4,(25:6,26:3):7):8,(23:0.0,24:0.0):11):12):12):2,9:1,28:33); END; BEGIN TREES; Title Gnomoniopsis_MPbt_tree; LINK Taxa = Gnomoniopsis_Taxa; TRANSLATE [0] 1 Gnomoniopsis_smithogilvyi_BL165, [1] 2 Gnomoniopsis_smithogilvyi_BL166, [2] 3 Gnomoniopsis_smithogilvyi_BL176, [3] 4 Gnomoniopsis_castanea_Rb7_type, [4] 5 Gnomoniopsis_castanea_NZ11, [5] 6 Gnomoniopsis_smithogilvyi_CBS130188, [6] 7 Gnomoniopsis_smithogilvyi_CBS130190_type, [7] 8 Gnomoniopsis_castanea_CH4, [8] 9 Gnomoniopsis_paraclavulata_CBS123202, [9] 10 Gnomoniopsis_paraclavulata_AR4313, [10] 11 Gnomoniopsis_alderdunense_CBS125680, [11] 12 Gnomoniopsis_alderdunense_CBS125681, [12] 13 Gnomoniopsis_guttulata_MS0312, [13] 14 Gnomoniopsis_occulta_CBS125677, [14] 15 Gnomoniopsis_occulta_CBS125678, [15] 16 Gnomoniopsis_chamaemori_CBS804_79, [16] 17 Gnomoniopsis_racemula_AR3892, [17] 18 Gnomoniopsis_fructicola_CBS208_34, [18] 19 Gnomoniopsis_fructicola_AR4275, [19] 20 Gnomoniopsis_comari_CBS806_79, [20] 21 Gnomoniopsis_comari_CBS807_79, [21] 22 Gnomoniopsis_tormentillae_CBS904_79, [22] 23 Gnomoniopsis_idaeicola_CBS125672, [23] 24 Gnomoniopsis_idaeicola_CBS125674, [24] 25 Gnomoniopsis_sanguisorbae_CBS858_79, [25] 26 Gnomoniopsis_sanguisorbae_CBS125299, [26] 27 Gnomoniopsis_macounii_AR3866, [27] 28 Apiognomonia_veneta_AR4184; TREE PAUP_1 = (28:100,((1:100,2:100,3:100,4:100,5:100,6:100,7:100,8:100):99.716286,9:100):66.729271,10:100,((((((11:100,12:100):95.137444,17:100):55.358391,13:100,((14:100,15:100):87,16:100):51.868336):83.403145,(18:100,19:100):99.654251,((20:100,21:100):91.541977,22:100):80.567802,27:100):53.368855,(25:100,26:100):98.873108):76.366135,(23:100,24:100):100):87.386253); END; BEGIN TREES; Title Gnomoniopsis_ML_trees; LINK Taxa = Gnomoniopsis_Taxa; TRANSLATE [0] 26 Gnomoniopsis_smithogilvyi_BL165, [1] 27 Gnomoniopsis_smithogilvyi_BL166, [2] 25 Gnomoniopsis_smithogilvyi_BL176, [3] 24 Gnomoniopsis_castanea_Rb7_type, [4] 23 Gnomoniopsis_castanea_NZ11, [5] 22 Gnomoniopsis_smithogilvyi_CBS130188, [6] 21 Gnomoniopsis_smithogilvyi_CBS130190_type, [7] 20 Gnomoniopsis_castanea_CH4, [8] 19 Gnomoniopsis_paraclavulata_CBS123202, [9] 10 Gnomoniopsis_paraclavulata_AR4313, [10] 1 Gnomoniopsis_alderdunense_CBS125680, [11] 2 Gnomoniopsis_alderdunense_CBS125681, [12] 3 Gnomoniopsis_guttulata_MS0312, [13] 5 Gnomoniopsis_occulta_CBS125677, [14] 6 Gnomoniopsis_occulta_CBS125678, [15] t16t Gnomoniopsis_chamaemori_CBS804_79, [16] 7 Gnomoniopsis_racemula_AR3892, [17] 18 Gnomoniopsis_fructicola_CBS208_34, [18] 12 Gnomoniopsis_fructicola_AR4275, [19] t20t Gnomoniopsis_comari_CBS806_79, [20] t21t Gnomoniopsis_comari_CBS807_79, [21] t22t Gnomoniopsis_tormentillae_CBS904_79, [22] 16 Gnomoniopsis_idaeicola_CBS125672, [23] 17 Gnomoniopsis_idaeicola_CBS125674, [24] t25t Gnomoniopsis_sanguisorbae_CBS858_79, [25] 15 Gnomoniopsis_sanguisorbae_CBS125299, [26] 13 Gnomoniopsis_macounii_AR3866, [27] 28 Apiognomonia_veneta_AR4184; TREE 'PHYLIP 1+' = (28,((((13,(((7,((3,(1,2)),(24,(5,6)))),(20,(19,10))),(12))),(15)),(16,17)),(18,(((21,(22,(23,((25,(26,27)))))))))))[% ] [%unrooted = on ]; END; BEGIN TREES; Title Gnomoniopsis_Bayesian_trees; LINK Taxa = Gnomoniopsis_Taxa; TRANSLATE [0] 1 Gnomoniopsis_smithogilvyi_BL165, [1] 2 Gnomoniopsis_smithogilvyi_BL166, [2] 3 Gnomoniopsis_smithogilvyi_BL176, [3] 4 Gnomoniopsis_castanea_Rb7_type, [4] 5 Gnomoniopsis_castanea_NZ11, [5] 6 Gnomoniopsis_smithogilvyi_CBS130188, [6] 7 Gnomoniopsis_smithogilvyi_CBS130190_type, [7] 8 Gnomoniopsis_castanea_CH4, [8] 9 Gnomoniopsis_paraclavulata_CBS123202, [9] 10 Gnomoniopsis_paraclavulata_AR4313, [10] 11 Gnomoniopsis_alderdunense_CBS125680, [11] 12 Gnomoniopsis_alderdunense_CBS125681, [12] 13 Gnomoniopsis_guttulata_MS0312, [13] 14 Gnomoniopsis_occulta_CBS125677, [14] 15 Gnomoniopsis_occulta_CBS125678, [15] 16 Gnomoniopsis_chamaemori_CBS804_79, [16] 17 Gnomoniopsis_racemula_AR3892, [17] 18 Gnomoniopsis_fructicola_CBS208_34, [18] 19 Gnomoniopsis_fructicola_AR4275, [19] 20 Gnomoniopsis_comari_CBS806_79, [20] 21 Gnomoniopsis_comari_CBS807_79, [21] 22 Gnomoniopsis_tormentillae_CBS904_79, [22] 23 Gnomoniopsis_idaeicola_CBS125672, [23] 24 Gnomoniopsis_idaeicola_CBS125674, [24] 25 Gnomoniopsis_sanguisorbae_CBS858_79, [25] 26 Gnomoniopsis_sanguisorbae_CBS125299, [26] 27 Gnomoniopsis_macounii_AR3866, [27] 28 Apiognomonia_veneta_AR4184; TREE con_50_majrule = 0; TREE con_50_majrule = 0; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1434712779336; linkFile 'Dothiorella files/Phylogenetic analysis Gnomoniopsis/MP analysis/MPhr.tre'; linkFile 'Dothiorella files/Phylogenetic analysis Gnomoniopsis/MP analysis/MPbt.tre'; linkFile 'Dothiorella files/Phylogenetic analysis Gnomoniopsis/Bayesian analysis/Gnomoniopsis.tre'; linkFile gnomoniopsis_ml_tree.tre; linkFile 'Dothiorella files/Phylogenetic analysis Gnomoniopsis/Bayesian analysis/Gnomoniopsis.tre'; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4525631882548216112; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 610761686848007517; mqVersion 303; checksumv 0 3 1628883555 null getNumChars 573 numChars 573 getNumTaxa 28 numTaxa 28 short true bits 15 states 15 sumSquaresStatesOnly 330271.0 sumSquares 330271.0 longCompressibleToShort false usingShortMatrix true NumFiles 6 NumMatrices 1 errorReportedDuringRun; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 256; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1354 669; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #4525631882548216112 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 7; toggleUseWeights off; endTell; setAssignedID 1707.1434712753836.1965180251584290639; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1098 597; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #610761686848007517 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 248; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1098 597; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;