NEXUS
[File created by TreeBASE:  7/26/07  21:17:37]
[Matrix accession#: M3205]

BEGIN TAXA;
	TITLE M3205;
	DIMENSIONS  NTAX=12;
	TAXLABELS
		Rhexocercosporidium_panacis_RRD3	Rhexocercosporidium_panacis_DAOM235605	Rhexocercosporidium_panacis_DAOM235603	Rhexocercosporidium_panacis_DAOM235604	Rhexocercosporidium_carotae_PRI787	Rhexocercosporidium_carotae_PRI784	Rhexocercosporidium_carotae_DAOM229433	Rhexocercosporidium_carotae_DAOM226960	Rhexocercosporidium_sp_DSE481b	Euascomycete_OOO15	Euascomycete_OOO36	Phialophora_gregata_98G13
	;
END;

BEGIN CHARACTERS;
	TITLE M3205;
	DIMENSIONS NCHAR=515;
	FORMAT DATATYPE = DNA MISSING = ? GAP = -  ;
	MATRIX
		Rhexocercosporidium_panacis_RRD3             CCTCACATGAGCTTGCTCAGTGGCGGGCTACCCTACTT--GTAGGGTTTAGAGTCGTCGGGCC-TCTCGAAGAAGTCCGGTTCTGAACTCCACCCTTGAATAAATTACCTTTGTTGCTTTGGCAGGCCGCCTCGTGCCAGCGGCTTCGGCTGTTGAGTGCCTGCCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTTTCGCGGCCCCTAAAATCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGCAACCCCCAAT?
		Rhexocercosporidium_panacis_DAOM235605       CCTCACATGAGCTTGCTCAGTGGCGGGCTACCCTACTT--GTAGGGTTTAGAGTCGTCGGGCC-TCTCGAAGAAGTCCGGTTCTGAACTCCACCCTTGAATAAATTACCTTTGTTGCTTTGGCAGGCCGCCTCGTGCCAGCGGCTTCGGCTGTTGAGTGCCTGCCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTTTCGCGGCCCCTAAAATCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGCAACCCCCAAT?
		Rhexocercosporidium_panacis_DAOM235603       CCTCACATGAGCTTGCTCAGTGGCGGGCTACCCTACTT--GTAGGGTTTAGAGTCGTCGGGCC-TCTCGAAGAAGTCCGGTTCTGAACTCCACCCTTGAATAAATTACCTTTGTTGCTTTGGCAGGCCGCCTCGTGCCAGCGGCTTCGGCTGTTGAGTGCCTGCCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTTTCGCGGCCCCTAAAATCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGCAACCCCCAAT?
		Rhexocercosporidium_panacis_DAOM235604       CCTCACATGAGCTTGCTCAGTGGCGGGCTACCCTACTT--GTAGGGTTTAGAGTCGTCGGGCC-TCTCGAAGAAGTCCGGTTCTGAACTCCACCCTTGAATAAATTACCTTTGTTGCTTTGGCAGGCCGCCTCGTGCCAGCGGCTTCGGCTGTTGAGTGCCTGCCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTTTCGCGGCCCCTAAAATCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGCAACCCCCAAT?
		Rhexocercosporidium_carotae_PRI787           CCCCATATGAGCTTGCTCAGTGGAGGGCTACCCTACTT--GTAGGGTTTAGAGTCGTCAGACC-TCTCGAAGAAGTCTGGTTCTGAACTCCACCCTTGAATATATTACCTTTGTTGCTTTGGTAGGCCGCCACGTGCCAGCGGCTTCGGCTGTTGAGTGCCTACCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTCTCGCGGCTCCTAAAGTCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGTAACCCCCAATT
		Rhexocercosporidium_carotae_PRI784           CCCCATATGAGCTTGCTCAGTGGAGGGCTACCCTACTT--GTAGGGTTTAGAGTCGTCAGACC-TCTCGAAGAAGTCTGGTTCTGAACTCCACCCTTGAATATATTACCTTTGTTGCTTTGGTAGGCCGCCTCGTGCCAGCGGCTTCGGCTGTTGAGTGCCTACCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTCTCGCGGCTCCTAAAGCCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGTAACCCCCAATT
		Rhexocercosporidium_carotae_DAOM229433       CCCCATATGAGCTTGCTCAGTGGAGGGCTACCCTACTT--GTAGGGTTTAGAGTCGTCAGACC-TCTCGAAGAAGTCTGGTTCTGAACTCCACCCTTGAATATATTACCTTTGTTGCTTTGGTAGGCCGCCTCGTGCCAGCGGCTTCGGCTGTTGAGTGCCTACCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTCTCGCGGCTCCTAAAGTCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGTAACCCCCAAT?
		Rhexocercosporidium_carotae_DAOM226960       CCCCATATGAGCTTGCTCAGTGGAGGGCTACCCTACTT--GTAGGGTTTAGAGTCGTCAGACC-TCTCGAAGAAGTCTGGTTCTGAACTCCACCCTTGAATATATTACCTTTGTTGCTTTGGTAGGCCGCCTCGTGCCAGCGGCTTCGGCTGTTGAGTGCCTACCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTCTCGCGGCTCCTAAAGTCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGTAACCCCCAAT?
		Rhexocercosporidium_sp_DSE481b               CCCCACAGAAGCTTGCTTCGTGGCGGGCTACCCTACTCCGGTAGGGTTTAGAGTCGTCGAACC-TCTCGGAGAAGTTCGGTCCTGAACTCCACCCTTGAATAAATTACCTTTGTTGCTTTGGCAGGCCGCCTAGTGCCAACGGCTTCGGCTGTTGAGTGCCTGCCAGAGGACCACAACTCTTGTCTCTAGTGATGTCTGAGTACTACATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTGGCTTGGTCTTGGGGTTCGCGGTCTCGCGGCTCCTAAAATCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGCAAGTCTACTTGCCAGTAACCCCTAAA?
		Euascomycete_OOO15                           ?CCCGCGGAGCCTTGCTCCCTG--GGGCTACCCTACTTCGGTAAGGTTTAGAGTCGTCGGGCCCTCTCGAAGAAGCTCGGTCCTGAACTCCACCCTTGAATAAATTACCTTTGTTGCTTTGGCGGGCCGCCTCGTGCCAGCGGCTTCGGCTGTTGCGTGCCCGCCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTCTCGCGGCCCCTAAAATCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGCAACCCCTAAT?
		Euascomycete_OOO36                           GCCCGCGGAGC-TTGCTCCCTG--GGGCTACCCTACTTCAGTAGGGTTTAGAGTCGTCGGGCC-TCTCGAAGAAGCTCGGTCCTGAACTCCACCCTTGAATAAATTACCTTTGTTGCTTTGGCGGGCCGCCTCGTGCCAGCGGCTTCGGCTGTTGCGTGCCCGCCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATTTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTCTCGCGGCCCCTAAAATCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGCAACCCCTAAT?
		Phialophora_gregata_98G13                    CCCCACAGGAGCTTGCTCCGTGGCGGGCTGCCC----------------------GTCGAGCC-TCTCGAAGAAGCTCGGTCCTGAACTCCACCCTTGAATAAATTACCTTTGTTGCTTTGGCGGGCCGCCTCGCGCCAGCGGCTTCGGCTGTTGCGTGCCCGCCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTTCCGCGGCCCCTAAAATCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCTGGCAGGTCTACATGCCAGCAACACCCAAA?
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 515 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;