NEXUS
[File created by TreeBASE:  7/26/07  21:17:37]
[Matrix accession#: M3206]

BEGIN TAXA;
	TITLE M3206;
	DIMENSIONS  NTAX=10;
	TAXLABELS
		Rhexocercosporidium_carotae_PRI784	Rhexocercosporidium_carotae_PRI787	Rhexocercosporidium_carotae_DAOM226960	Rhexocercosporidium_panacis_DAOM235604	Rhexocercosporidium_panacis_DAOM235603	Rhexocercosporidium_panacis_RRD3	Rhexocercosporidium_panacis_DAOM235605	Euascomycete_OOO36	Euascomycete_OOO15	Phialophora_gregata_98G13
	;
END;

BEGIN CHARACTERS;
	TITLE M3206;
	DIMENSIONS NCHAR=716;
	FORMAT DATATYPE = DNA MISSING = ? GAP = -  ;
	MATRIX
		Rhexocercosporidium_carotae_PRI784           CCCCATATGAGCTTGCTCAGTGGAGGGCTACCCTACTT--GTAGGGTTTAGAGTCGTCAGACC-TCTCGAAGAAGTCTGGTTCTGAACTCCACCCTTGAATATATTACCTTTGTTGCTTTGGTAGGCCGCCTCGTGCCAGCGGCTTCGGCTGTTGAGTGCCTACCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTCTCGCGGCTCCTAAAGCCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGTAACCCCCAATTCTCTAGCCGTGGTAAAGTCTCCATGAAGGAGGTCGAGGATCAGATGCGCAATGTCCAGAACAAGAACTCGTCGTACTTCGTTGAGTGGATTCCCAACAACGTCCAAACCGCCCTTTGCTCCATCCCACCACGTGGTCTCAAGATGTCCTCCACCTTCGTCGGTAACTCCACCTCCATCCAGGAGCTCTTCAAGCGTATCGG
		Rhexocercosporidium_carotae_PRI787           CCCCATATGAGCTTGCTCAGTGGAGGGCTACCCTACTT--GTAGGGTTTAGAGTCGTCAGACC-TCTCGAAGAAGTCTGGTTCTGAACTCCACCCTTGAATATATTACCTTTGTTGCTTTGGTAGGCCGCCACGTGCCAGCGGCTTCGGCTGTTGAGTGCCTACCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTCTCGCGGCTCCTAAAGTCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGTAACCCCCAATTCTCTAGCCGTGGTAAAGTCTCCATGAAGGAGGTCGAGGATCAGATGCGCAATGTCCAGAACAAGAACTCGTCGTACTTCGTTGAGTGGATTCCCAACAACGTCCAAACCGCCCTTTGCTCCATCCCACCACGTGGTCTCAAGATGTCCTCCACCTTCGTCGGTAACTCCACCTCCATCCAGGAGCTCTTCAAGCGTATCGG
		Rhexocercosporidium_carotae_DAOM226960       CCCCATATGAGCTTGCTCAGTGGAGGGCTACCCTACTT--GTAGGGTTTAGAGTCGTCAGACC-TCTCGAAGAAGTCTGGTTCTGAACTCCACCCTTGAATATATTACCTTTGTTGCTTTGGTAGGCCGCCTCGTGCCAGCGGCTTCGGCTGTTGAGTGCCTACCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTCTCGCGGCTCCTAAAGTCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGTAACCCCCAATTCTCTAGCCGTGGTAAAGTCTCCATGAAGGAGGTCGAGGATCAGATGCGCAATGTCCAGAACAAGAACTCGTCGTACTTCGTTGAGTGGATTCCCAACAACGTCCAAACCGCCCTTTGCTCCATCCCACCACGTGGTCTCAAGATGTCCTCCACCTTCGTCGGTAACTCCACCTCCATCCAGGAGCTCTTCAAGCGTATCGG
		Rhexocercosporidium_panacis_DAOM235604       CCTCACATGAGCTTGCTCAGTGGCGGGCTACCCTACTT--GTAGGGTTTAGAGTCGTCGGGCC-TCTCGAAGAAGTCCGGTTCTGAACTCCACCCTTGAATAAATTACCTTTGTTGCTTTGGCAGGCCGCCTCGTGCCAGCGGCTTCGGCTGTTGAGTGCCTGCCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTTTCGCGGCCCCTAAAATCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGCAACCCCCAATCTTTTAGCCGTGGTAAGGTCTCCATGAAGGAGGTCGAGGATCAAATGCGCAATGTCCAGAACAAGAACTCCTCGTACTTCGTTGAGTGGATCCCCAACAACGTCCAAACTGCCCTTTGCTCCATTCCACCACGTGGTCTCAAGATGTCCTCTACCTTCGTCGGTAACTCTACCTCCATTCAGGAGCTCTTCAAGCGTATCGG
		Rhexocercosporidium_panacis_DAOM235603       CCTCACATGAGCTTGCTCAGTGGCGGGCTACCCTACTT--GTAGGGTTTAGAGTCGTCGGGCC-TCTCGAAGAAGTCCGGTTCTGAACTCCACCCTTGAATAAATTACCTTTGTTGCTTTGGCAGGCCGCCTCGTGCCAGCGGCTTCGGCTGTTGAGTGCCTGCCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTTTCGCGGCCCCTAAAATCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGCAACCCCCAATCTTTTAGCCGTGGTAAGGTCTCCATGAAGGAGGTCGAGGATCAAATGCGCAATGTCCAGAACAAGAACTCCTCGTACTTCGTTGAGTGGATCCCCAACAACGTCCAAACTGCCCTTTGCTCCATTCCACCACGTGGTCTCAAGATGTCCTCTACCTTCGTCGGTAACTCTACCTCCATTCAGGAGCTCTTCAAGCGTATCGG
		Rhexocercosporidium_panacis_RRD3             CCTCACATGAGCTTGCTCAGTGGCGGGCTACCCTACTT--GTAGGGTTTAGAGTCGTCGGGCC-TCTCGAAGAAGTCCGGTTCTGAACTCCACCCTTGAATAAATTACCTTTGTTGCTTTGGCAGGCCGCCTCGTGCCAGCGGCTTCGGCTGTTGAGTGCCTGCCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTTTCGCGGCCCCTAAAATCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGCAACCCCCAATCTTTTAGCCGTGGTAAGGTCTCCATGAAGGAGGTCGAGGATCAAATGCGCAATGTCCAGAACAAGAACTCCTCGTACTTCGTTGAGTGGATCCCCAACAACGTCCAAACTGCCCTTTGCTCCATTCCACCACGTGGTCTCAAGATGTCCTCTACCTTCGTCGGTAACTCTACCTCCATTCAGGAGCTCTTCAAGCGTATCGG
		Rhexocercosporidium_panacis_DAOM235605       CCTCACATGAGCTTGCTCAGTGGCGGGCTACCCTACTT--GTAGGGTTTAGAGTCGTCGGGCC-TCTCGAAGAAGTCCGGTTCTGAACTCCACCCTTGAATAAATTACCTTTGTTGCTTTGGCAGGCCGCCTCGTGCCAGCGGCTTCGGCTGTTGAGTGCCTGCCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTTTCGCGGCCCCTAAAATCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGCAACCCCCAATCTTTTAGCCGTGGTAAGGTCTCCATGAAGGAGGTCGAGGATCAAATGCGCAATGTCCAGAACAAGAACTCCTCGTACTTCGTTGAGTGGATCCCCAACAACGTCCAAACTGCCCTTTGCTCCATTCCACCACGTGGTCTCAAGATGTCCTCTACCTTCGTCGGTAACTCTACCTCCATTCAGGAGCTCTTCAAGCGTATCGG
		Euascomycete_OOO36                           GCCCGCGGAGC-TTGCTCCCTG--GGGCTACCCTACTTCAGTAGGGTTTAGAGTCGTCGGGCC-TCTCGAAGAAGCTCGGTCCTGAACTCCACCCTTGAATAAATTACCTTTGTTGCTTTGGCGGGCCGCCTCGTGCCAGCGGCTTCGGCTGTTGCGTGCCCGCCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATTTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTCTCGCGGCCCCTAAAATCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGCAACCCCTAATTTTTCAGCCGTGGTAAGGTTTCTATGAAGGAGGTCGAGGATCAAATGCGCAACGTCCAGAACAAGAACTCATCCTACTTCGTTGAGTGGATCCCCAACAACGTCCAAACCGCCCTTTGCTCCATCCCACCACGTGGTCTCAAGATGTCCTCCACCTTTGTCGGTAACTCCACCTCCATCCAAGAGCTCTTCAAGCGTATCGG
		Euascomycete_OOO15                           ?CCCGCGGAGCCTTGCTCCCTG--GGGCTACCCTACTTCGGTAAGGTTTAGAGTCGTCGGGCCCTCTCGAAGAAGCTCGGTCCTGAACTCCACCCTTGAATAAATTACCTTTGTTGCTTTGGCGGGCCGCCTCGTGCCAGCGGCTTCGGCTGTTGCGTGCCCGCCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTCTCGCGGCCCCTAAAATCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCCGGTAGGTTTACTTGCCAGCAACCCCTAATTTTTCAGCCGTGGTAAGGTTTCTATGAAGGAGGTCGAGGATCAAATGCGCAACGTTCAGAACAAGAACTCATCCTACTTCGTTGAGTGGATCCCCAACAACGTCCAAACCGCCCTTTGCTCCATCCCACCACGTGGTCTCAAGATGTCCTCCACCTTTGTCGGTAACTCCACCTCCATCCAAGAGCTCTTCAAGCGTATCGG
		Phialophora_gregata_98G13                    CCCCACAGGAGCTTGCTCCGTGGCGGGCTGCCC------------G----------TCGAGCC-TCTCGAAGAAGCTCGGTCCTGAACTCCACCCTTGAATAAATTACCTTTGTTGCTTTGGCGGGCCGCCTCGCGCCAGCGGCTTCGGCTGTTGCGTGCCCGCCAGAGGACCACAACTCTTGTTTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCTCTCGCTTGGTATTGGGGTTCGCGGTTCCGCGGCCCCTAAAATCAGTGGCGGTGCCTGTCGGCTCTACGCGTAGTAATACTCCTCGCGATTGAGTCTGGCAGGTCTACATGCCAGCAACACCCAAATTTCTAGCCGTGGTAAGGTTTCCATGAAAGAGGTTGAGGATCAAATGCGCAATGTCCAGAACAAGAACTCCTCCTACTTCGTCGAGTGGATCCCCAATAACGTCCAAACCGCCCTCTGCTCTATCCCTCCACGTGGTCTTAAGATGTCTTCCACATTCGTTGGTAACTCCACCTCTATCCAGGAGCTCTTCAAGCGTATCGG
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 716 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;