#NEXUS BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=22; TAXLABELS Neisseria_meningitidis_c58_NMB0653Mc58 Neisseria_meningitidis_Alpha14_NMO0536Alpha14 Neisseria_meningitidis_fam18_NMC0597Fam18 Neisseria_meningitidis_Alpha153_NME0919Alpha153 Neisseria_meningitidis_MafB2MGI2B16B6 Neisseria_meningitidis_c58_NMB0374Mc58 Neisseria_meningitidis_G2136_NMBG21360596G2136 Neisseria_meningitidis_MafBMGI1B16B6 Neisseria_meningitidis_Alpha14_NMO1664Alpha14 Neisseria_meningitidis_fam18_NMC1790Fam18 Neisseria_meningitidis_fam18_NMC0586Fam18 Neisseria_meningitidis_G2136_NMBG21360582G2136 Neisseria_meningitidis_MafB1MGI2B16B6 Neisseria_meningitidis_Alpha14_NMO0529Alpha14 Neisseria_meningitidis_fam18_NMC2084Fam18 Neisseria_meningitidis_ES14902_NMBES149022004ES14902 Neisseria_meningitidis_MafBMGI3B16B6 Neisseria_meningitidis_NMV23128013 Neisseria_meningitidis_Alpha275_NMW0775Alpha275 Neisseria_meningitidis_NMCC2069053442 Neisseria_meningitidis_c58_NMB2105Mc58 Neisseria_meningitidis_Alpha14_NMO0063Alpha14 ; END; BEGIN CHARACTERS; TITLE MafB_Alignment; DIMENSIONS NCHAR=359; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX Neisseria_meningitidis_c58_NMB0653Mc58 DPFITDNAQRQHYEPGGKYHLFGDPRGSVSDRTGKINVIQDYTHQMGNLLI--QQANINGTIGYHTRFSGHGHEEHAPFDNHAADSASEEKGNVDEGFTVYRLNWEGHEHHPADAYDGPKGGNYPKPTGARDEYTYHVNGTARSIKLNPTDTRSIRQRISDNYSNLGSNFSDRADEANRKMFEHNAKLDRWGNSMEFINGVAAGALNPFISAG---------------------------------------------------------EAVDQWMQENPNAAETVEALVNVL------------------------PFAKVKNLTKAAKPGKAAVSGDFSDS----YKHNTA-SR-- Neisseria_meningitidis_Alpha14_NMO0536Alpha14 DPFITDNAQRQHYEPGGKYHLFGDPRGSVSDRTGQINVIQDYTHRMGNLLI--QQANINGTIGYHTRFSGHGHEEHAPFDNHASRSASKEQGNVDEGFTVYRLNWEGHEHHPADAYDGPKGGNYPKPTGARDEYTYHVNGTARSIKLNPTDTRSIRQRISDNYSNLGSNFSDRADEANRKMFEHNAKLDRWGNSMEFINGVAAGALNPFISAG---------------------------------------------------------EAVDQWMQENPNAAETVEALVNVL------------------------PFAKVKNLTKAAKPGKAAVSGDFSDS----YKHNTA-SR-- Neisseria_meningitidis_fam18_NMC0597Fam18 DPFITDNAQRQHYEPGGKYHLFGDPRGSVSDRTGQINVIQDYTHQMGNLLI--QQAAIQGNLGYTVRFSGHGHEEHAPFDNHAADSASKEQGNVDEGFTVYRLNWEGHEHHPADAYDGPKGGNYPKPTGARDEYTYHVNGTARSIKLNPTDTRSIRQRISDNYNNLGSNFSDRADEANRKMFEHNAKLDRWGNSMEFINGVAAGALNPFISAG---------------------------------------------------------EAVDQWMQENPNAAETVEALVNVL------------------------PFAKVKNLTKAAKPGKAAVSGDFSDS----YKHNTA-SR-- Neisseria_meningitidis_Alpha153_NME0919Alpha153 DPFITDNAQRQHYEPGGKYHLFGDPRGSVSDRTGQINVIQDYTHQMGNLLI--QQAAIQGNLGYTVRFSGHGHEEHAPFDNHAADSASKEQGNVDEGFTVYRLNWEGHEHHPADAYDGPKGGNYPKPTGARDEYTYHVNGTARSIKLNPTDTRSIRQRISDNYNNLGSNFSDRADEANRKMFEHNAKLDRWGNSMEFINGVAAGALNPFISAG---------------------------------------------------------EAVDQWMQENPNAAETVEALVNVL------------------------PFAKVKNLTKAAKPGKAAVSGDFSDS----YKHNTA-SR-- Neisseria_meningitidis_MafB2MGI2B16B6 DPFITDNAQRQHYEPGGKYHLFGDPRGSVSDRTGQINVIQDYTHQMGNLLI--QQAAIQGNLGYTVRFSGHGHEEHAPFDNHAADSASKEQGNVDEGFTVYRLNWEGHEHHPADAYDGPKGGNYPKPTGARDEYTYHVNGTARSIKLNPTDTRSIRQRISDNYNNLGSNFSDRADEANRKMFEHNAKLDRWGNSMEFINGVAAGALNPFISAG---------------------------------------------------------EAVDQWMQENPNAAETVEALVNVL------------------------PFAKVKNLTKAAKPGKAAVSGDFSDS----YKHNTA-SR-- Neisseria_meningitidis_c58_NMB0374Mc58 DPFITDNAQRQHYEPGGKYHLFGDPRGSVSDRTGKINVIQDYTHQMGNLLI--QQANINGTIGYHTRFSGHGHEEHAPFDNHAADSASEEKGNVDEGFTVYRLNWEGHEHHPADAYDGPKGGNYPKPTGARDEYTYHVNGTARSIKLNPTDTRSIRQRISDNYSNLGSNFSDRADEANRKMFEHNAKLDRWGNSMEFINGVAAGALNPFISAGEALGIGDILYGTRYAIDKAA-------MRNIAPLPAEGKFAVIGGLGSVAGFEKNTREAVDRWIQENPNAAETVEAVFNVA------------------------AAAKVAKLAKAAKPGKAAVSGDFADS----YKKKLALSD-- Neisseria_meningitidis_G2136_NMBG21360596G2136 DPFITDNAQRQHYEPGGKYHLFGDPRGSVSDRTGQINVIQDYTHQMGNLLI--QQANINGTIGYHTRFSGHGHEEHAPFDNHAADSASKEQGNVDEGFTVYRLNWEGHEHHPADAYDGPKGGNYPKPTGARDEYTYHVNGTARSIKLNPTDTRSIRQRISDNYSNLGSNFSDRADEANRKMFEHNAKLDRWGNSMEFINGVAAGALNPFISAGEALGIGDILYGTRYAIDKAA-------MRNIAPLPAEGKFAAIGGLGSVAGFEKNTREAVDRWIQENPNAAETVEALVNVL------------------------PFAKVKNLTKAAKPGKAAVSGDFSAA----YN------T-- Neisseria_meningitidis_MafBMGI1B16B6 DPFITDNAQRQHYEPGGKYHLFGDPRGSVSDRTGQINVIQDYTHQMGNLLI--QQANINGTIGYHTRFSGHGHEEHAPFDNHAADSASKEQGNVDEGFTVYRLNWEGHEHHPADAYDGPKGGNYPKPTGARDEYTYHVNGTARSIKLNPTDTRSIRQRISDNYNNLGSNFSDRADEANRKMFEHNAKLDRWGNSMEFINGVAAGALNPFISAGEALGIGDILYGTRYAIDKAA-------MRNIAPLPAEGKFAVIGGLGSVAGFEKNTREAVDRWIQENPNAAETVEALVNVL------------------------PFAKVKNLTKAA----------------------------- Neisseria_meningitidis_Alpha14_NMO1664Alpha14 DPFITDNAQRQHYEPGGKYHLFGDPRGSVSDRTGQINVIQDYTHRMGNLLI--QQANINGTIGYHTRFSGHGHEEHAPFDNHASRSASKEQGNVDEGFTVYRLNWEGHEHHPADAYDGPKGGNYPKPTGARDEYTYHVNGTARSIKLNPTDTRSIRQRISDNYSNLGSNFSDRADEANRKMFEHNAKLDRWGNSMEFINGVAAGALNPFISAGEALGIGDILYGTRYAIDKAA-------MRNIAPLPAEGKFAAIGGLGSVAGFEKNTREAVDRWIQENPNAAETVEALVNVL------------------------PFAKVKNLTKAAKPGKAAVSGDFSKS----YTCSFHGST-- Neisseria_meningitidis_fam18_NMC1790Fam18 DPFITDNTQRQHYEPGGKYHLFGDPRGSVSDRTGQINVIQDYTHQMGNLLI--QQAAIQGNLGYTVRFSGHGYEEHAPFDNHAADSASKEQGNVDDGFTVYRLNWEGHEHHPADAYDGPKGGNYPKPTGARDEYTYHVNGTARSIKLNPTDTRSIRQRISDNYNNLGSNFSDRADEANKKIFEHNAKLDRWGNSMEFVNGIAAGALNPFISAGEALGIGDILYGTRYAIDKAA-------MRNIAPLPTEGKFAVIGGLGSVAGFEKNTREAVDRWIQENPNAAETVEALVNVL------------------------PFAKVKNLTKAAKPGKAAVSGDFSKS----YTCSFHGST-- Neisseria_meningitidis_fam18_NMC0586Fam18 DSFIRQVLDRQHFEPDGKYHLFGS-RGELAERSGHIGLGKIQSHQLGNLMI--QQAAIKGNIGYIVRFSDHGHEVHSPFDNHASHSDSDEAGSPVDGFSLYRIHWDGYEHHPADGYDGPQGGGYPAPKGARDIYSYDIKGVAQNIRLNLTDNRSTGQRLADRFHNAGSMLTQGVGDGFKRATRYSPELDRSGNAAEAFNGTADIVKNIIGAAGEIVGAGDAVQGISEGSNIAV-------MHGLGLLSTENKMARINDLADMAQLKDYAAAAIRDWAVQNPNAAQGIEAVSNIFMAAIPIKGIGAVRGKYGLGGITAHPIKRSQMGAIALPKGKSAVSDNFADAAYAKYPSPYHSRN-- Neisseria_meningitidis_G2136_NMBG21360582G2136 DSFIRQVLDRQHFEPDGKYHLFGS-RGELAERSGHIGLGKIQSHQLGNLMI--QQAAIKGNIGYIVRFSDHGHEVHSPFDNHASHSDSDEAGSPVDGFSLYRIHWDGYEHHPADGYDGPQGGGYPAPKGARDIYSYDIKGVAQNIRLNLTDNRSTGQRLADRFHNAGSMLTQGVGDGFKRATRYSPELDRSGNAAEAFNGTADIVKNIIGAAGEIVGAGDAVQGISEGSNIAV-------MHGLGLLSTENKMARINDLADMAQLKDYAAAAIRDWAVQNPNAAQGIEAVSNIFMAAIPIKGIGAVRGKYGLGGITAHPIKRSQMGAIALPKGKSAVSDNFADAAYAKYPSPYHSRN-- Neisseria_meningitidis_MafB1MGI2B16B6 DSFIRQVLDRQHFEPDGKYHLFGS-RGELAERSGHIGLGKIQSHQLGNLMI--QQAAIKGNIGYIVRFSDHGHEVHSPFDNHASHSDSDEAGSPVDGFSLYRIHWDGYEHHPADGYDGPQGGGYPAPKGARDIYSYDIKGVAQNIRLNLTDNRSTGQRLADRFHNAGSMLTQGVGDGFKRATRYSPELDRSGNAAEAFNGTADIVKNIIGAAGEIVGAGDAVQGISEGSNIAV-------MHGLGLLSTENKMARINDLADMAQLKDYAAAAIRDWAVQNPNAAQGIEAVSNIFMAAIPIKGIGAVRGKYG------------------------------------------------ Neisseria_meningitidis_Alpha14_NMO0529Alpha14 DSFIRQVLDRQHFEPDGKYHLFGS-RGELAERSGHIGLGNIQSHQLGNLMI--QQAAIKGNIGYIVRFSDHGHEVHSPFDNHASHSDSDEAGSPVDGFSLYRIHWDGYEHHPADGYDGPQGGGYPAPKGARDIYSYDIKGVAQNIRLNLTDNRSTGQRLADRFHNAGAMLTQGVGDGFKRATRYSPELDRSGNAAEAFNGTADIVKNIIGAAGEIVGAGDAVQGISESSNIAV-------MHGLGLLSTENKMARINDLADMAQLKDYAAAAIRDWAVQNPNAAQGIEAVSNIFTAVIPVKGIGAVRGKYGLGGITAHPVKRSQMGAIALPKGKSAVSDNFADAAYAKYPSPYHSRN-- Neisseria_meningitidis_fam18_NMC2084Fam18 DARLRDDMQAKHYEPGGKYHLFGDGRGSVKNRVYAVQTF-DATAVGPILPITHERTGFEGVIGYETHFSGHGHEVHSPFDNHDSRSTSDFSGGVDGGFTVYQLHRTGSEIHPEDGYDGPQGSDYPPPGGARDIYSYYVKGTSTKTKTNIVPQAPFSDRWLKENAGAASGFFSRADEAGKLIWESDPNKNWWANRMDDVRGIVQGAVNPFLMGFQGLGVGAITDSAVNPVTYAAARKTLQGIHNLGNLSPEAQLAAATALQDSAFAVKDGINSAKQWADAHPNITATAQTALSVA------------------------EAAGTVWGGKKVELNPTKW--DWVKN--TDYKTP-AARP-- Neisseria_meningitidis_ES14902_NMBES149022004ES14902 DARLRDDMQAKHYEPGGKYHLFGDGRGSVKNRVYAVQTF-DATAVGPILPITHERTGFEGVIGYETHFSGHGHEVHSPFDNHDSRSTSDFSGGVDGGFTVYQLHRTGSEIHPEDGYDGPQGSDYPPPGGARDIYSYYVKGTSTKTKTNIVPQAPFSDRWLKENAGAASGFFSRADEAGKLIWESDPNKNWWANRMDDVRGIVQGAVNPFLMGFQGLGVGAITDSAVNPVTYAAARKTLQGIHNLGNLSPEAQLAAATALQDSAFAVKDGINSAKQWADAHPNITATAQTALSVA------------------------EAAGTVWGGKKVELNPTKW--DWVKN--TDYKTP-AARP-- Neisseria_meningitidis_MafBMGI3B16B6 DARLRDDMQAKHYEPGGKYHLFGDGRGSVKNRVYAVQTF-DATAVGPILPITHERTGFEGVIGYETHFSGHGHEVHSPFDNHDSRSTSDFSGGVDGGFTVYQLHRTGSEIHPEDGYDGPQGSDYPPPGGARDIYSYYVKGTSTKTKTNIVPQAPFSDRWLKENAGAASGFFSRADEAGKLIWESDPNKNWWANRMDDVRGIVQGAVNPFLMGFQGLGVGAITDSAVNPVTYAAARKTLQGIHNLGNLSPEAQLAAATALQDSAFAVKDGINSAKQWADAHPNITATAQTALSVA------------------------EAAGTVWGGKKVELNPTKW--DWVKN--TDYKT-------- Neisseria_meningitidis_NMV23128013 DARLRDDMQAKHYEPGGKYHLFGNARGSVKNRVYAVQTF-DATAVSPVLPITHERTGFEGIIGYETHFSGHGHEVHSPFDNHDSKSTSDFSGGVDGGFTVYQLHRTGSEIHPEDGYDGPQGSDYPPPGGARDIYSYYVKGTSTKTKTNIVPQAPFSDRWLKENAGAASGFFSRADEAGKLIWESDPNKNWWANRMDDIRGIVQGAVNPFLMGFQGLGVGAITDSAVNPVTYAAARKTLQGIHNLGNLSPEAQLAAATALQDSAFAVKDSINSARQWADAHPNITATAQTALSVA------------------------EAAGTVWRGKKVELNPTKW--DWVKN--NGYKK-------- Neisseria_meningitidis_Alpha275_NMW0775Alpha275 DARLRDDMQAKHYEPGGKYHLFGNARGSVKNRVYAVQTF-DATAVSPVLPITHERTGFEGIIGYETHFSGHGHEVHSPFDHHDSKSTSDFSGGVDGGFTVYQLHRTGSEIHPEDGYDGPQGSDYPPPGGARDIYSYYVKGTSTKTKTNIVPQAPFSDRWLKENAGAASGFFSRADEAGKLIWESDPNKNWWANRMDDIRGIVQGAVNPFLMGFQGLGVGAITDSAVNPVTYAAARKTLQGIHNLGNLSPEAQLAAATALQDSAFAVKDSINSARQWADAHPNITATAQTALSVA------------------------EAAGTVWRGKKVELNPTKW--DWVKN--NGYKKP------- Neisseria_meningitidis_NMCC2069053442 DARLRDDMQAKHYEPGGKYHLFGNARGSVKNRVYAVQTF-DATAVSPVLPITHERTGFEGIIGYETHFSGHGYEVHSPFDHHDSKSTSDFSGGVDGGFTVYQLHRTGSEIHPEDGYDGPQGSDYPPPGGARDIYSYYVKGTSTKTKTNIVPQAPFSDRWLKENAGAASGFFSRADEAGKLIWESDPNKNWWANRMDDIRGIVQGAVNPFLMGFQGVGIGAITDSAVNPVTYAAARKTLQGIHNLGNLSPEAQLAAATALQDSAFAVKDSINSARQWADAHPNITATAQTALSAA------------------------EAAGTVWRGKKVELNPTKW--DWVKN--TGYKKP-AARH-- Neisseria_meningitidis_c58_NMB2105Mc58 DARLRDDMQAKHYEPGGKYHLFGNARGSVKKRVYAVQTF-DATAVSPVLPITHERTGFEGVIGYETHFSGHGHEVHSPFDHHDSKSTSDFSGGVDGGFTVYQLHRTGSEIHPEDGYDGPQGSDYPPPGGARDIYSYYVKGTSTKTKTNIVPQAPFSDRWLKENAGAASGFFSRADEAGKLIWESDPNKNWWANRMDDVRGIVQGAVNPFLMGFQGVGIGAITDSAVSPVTDTAAQQTLQGINDLGKLSPEAQLAAASLLQDSAFAVKDGINSAKQWADAHPNITATAQTALSAA------------------------EAAGTVWRGKKVELNPTKW--DWVKN--TGYKKP-AARH-- Neisseria_meningitidis_Alpha14_NMO0063Alpha14 DARLRDDMQAKHYEPGGKYHLFGDGRGSVKNRVYAVQTF-DATAVGPILPITHERTGFEGVIGYETHFSGHGHEVHSPFDHHDSKSTSDFSGGVDGGFTVYQLHRTGSEIHRRMDMTGRKAAIIRPSGGARDIYSYYVKGTSTKTKTNIVPQAPFSDRWLKENAGAASGFFSRADEAGKLIWENDPNKNWWANRMDDIRGIVQGAVNPFLTGFQGVGIGAITDSAVSPVTDTAAQQTLQGINHLGNLSPEAQLAAATALQDSAFAVKDGINSAKQWADAHPNITATAQTALSAA------------------------EAAGTVWRSKKVKLNPTKW--DWVKN--TGYE--------- ; END; BEGIN TREES; Title MafB_Result; LINK Taxa = Taxa; TRANSLATE 1 Neisseria_meningitidis_c58_NMB0653Mc58, 2 Neisseria_meningitidis_Alpha14_NMO0536Alpha14, 3 Neisseria_meningitidis_fam18_NMC0597Fam18, 4 Neisseria_meningitidis_Alpha153_NME0919Alpha153, 5 Neisseria_meningitidis_MafB2MGI2B16B6, 6 Neisseria_meningitidis_c58_NMB0374Mc58, 7 Neisseria_meningitidis_G2136_NMBG21360596G2136, 8 Neisseria_meningitidis_MafBMGI1B16B6, 9 Neisseria_meningitidis_Alpha14_NMO1664Alpha14, 10 Neisseria_meningitidis_fam18_NMC1790Fam18, 11 Neisseria_meningitidis_fam18_NMC0586Fam18, 12 Neisseria_meningitidis_G2136_NMBG21360582G2136, 13 Neisseria_meningitidis_MafB1MGI2B16B6, 14 Neisseria_meningitidis_Alpha14_NMO0529Alpha14, 15 Neisseria_meningitidis_fam18_NMC2084Fam18, 16 Neisseria_meningitidis_ES14902_NMBES149022004ES14902, 17 Neisseria_meningitidis_MafBMGI3B16B6, 18 Neisseria_meningitidis_NMV23128013, 19 Neisseria_meningitidis_Alpha275_NMW0775Alpha275, 20 Neisseria_meningitidis_NMCC2069053442, 21 Neisseria_meningitidis_c58_NMB2105Mc58, 22 Neisseria_meningitidis_Alpha14_NMO0063Alpha14; TREE Imported_tree_1 = ((((((5:0.0,4:0.0):0.0,3:0.0):0.00839574,10:0.02934459):0.01144966,((6:0.01534296,1:0.00807731):0.00881198,((8:0.00349633,7:0.00114405):0.00440916,(9:0.00300766,2:0.00629473):0.00968683):0.00312487):0.01761091):0.21674731,(((14:0.00759423,13:-0.00295385):0.00155466,12:-0.00155466):0.00082051,11:-0.00082051):0.44363061):0.12582839,(((16:0.0,17:0.0):0.0,15:0.0):0.00893038,(18:-0.00022485,((19:-0.00273529,20:0.01203768):0.00558469,(21:0.01239901,22:0.08987984):0.00404495):0.00736114):0.01452479):0.46361768); END;