#NEXUS [written Sat Jul 11 10:19:07 CEST 2015 by Mesquite version 3.03 (build 702) at Matthias-Lutzs-MacBook-Pro.local/192.168.178.49] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=65; TAXLABELS Anthracocystis_abscondita_HQ013090 Anthracocystis_cymbopogonisbombycini_HQ013099 Anthracocystis_everhartii_AY740159_AY740159 Anthracocystis_apludaearistatae_AY740045_AY740098 Anthracocystis_caledonica_HQ013093 Anthracocystis_chrysopogonis_AY344973_AY740131 Anthracocystis_elionuri_AY740157_AY740157 Anthracocystis_hwangensis_AY740051_AY740104 Anthracocystis_provincialis_AY344988_AY747076 Anthracocystis_sehimatis_HQ013110 Anthracocystis_themedaearguentis_AY344991_AY740140 Triodiomyces_triodiae_AY740074_AY740126 yeast_isolate_AB863531 yeast_isolate_AB726473 uncultured_soil_fungus_clone_DQ421310 Anthracocystis_gayana_JN872445_JN872445 Anthracocystis_pseudanthistiriae_JN367295_JN367320 Anthracocystis_sp_KF055231_KF055232 Anthracocystis_sp_KF055229_KF055230 Anthracocystis_polliniae_AY344987_AY740138 Anthracocystis_walkeri_JN367297_JN367322 yeast_isolate_JQ993391 yeast_isolate_JF292447_HQ641273 Anthracocystis_grodzinskae_KP297998_KP297996 Anthracocystis_grodzinskae_KP297999_KP297997 Anthracocystis_panicileucophaei_AY740035_AY740088 Anthracocystis_panicileucophaei_AY344986 Anthracocystis_panicileucophaei_AY998102 Anthracocystis_cenchri_AY344972_AF453943 Anthracocystis_formosana_AY344979_AY740134 Anthracocystis_destruens_AY344976_AY747077 Anthracocystis_destruens_AF045871 yeast_isolate_AM160638 Anthracocystis_flocculosa_DQ411535_AY745712 Anthracocystis_flocculosa_AB089364_AB089365 uncultured_fungus_clone_JX389323 Anthracocystis_mutabile_HQ013105 Anthracocystis_trispicatae_HQ013113 Anthracocystis_loudetiaepedicellatae_AY740053_AY740106 Anthracocystis_mexicana_AY998101 Anthracocystis_heteropogonicola_HQ013101_HQ013135 Ustilaginales_sp_EF060953 Ustilaginales_sp_EF060922 Ustilaginales_sp_EF060955 Ustilaginaceae_sp_EF060742 Ustilaginales_sp_EF060455 Anthracocystis_setariae_HQ013111 Anthracocystis_whiteochloae_HQ013115 Anthracocystis_cenchrielymoidis_HQ013094_HQ013122 Anthracocystis_xerofasciculata_HQ013117 Anthracocystis_andrewmitchellii_NR120127_JQ995370 Anthracocystis_ovaria_AY740020_AJ236137 Anthracocystis_penniseti_AY344971_AY740130 Anthracocystis_anthracoideispora_JN367290_JN367315 Anthracocystis_enteromorpha_AY740158_AY740158 Anthracocystis_apludae_AY344983_AY740136 Anthracocystis_bothriochloae_HQ013092 Langdonia_confusa_HQ013095_HQ013132 Anthracocystis_fallax_AY333941 Anthracocystis_fallax_AY333942 Anthracocystis_fallax_AY333940 Anthracocystis_tumefaciens_AY344969_AY740128 Anthracocystis_tumefaciens_AY333943 Anthracocystis_tumefaciens_AY333944 Anthracocystis_tumefaciens_AY333945 ; END; BEGIN TREES; Title 'Trees from "a.nex.con"'; LINK Taxa = Taxa; TRANSLATE [0] 1 Anthracocystis_abscondita_HQ013090, [1] 2 Anthracocystis_cymbopogonisbombycini_HQ013099, [2] 3 Anthracocystis_everhartii_AY740159_AY740159, [3] 4 Anthracocystis_apludaearistatae_AY740045_AY740098, [4] 5 Anthracocystis_caledonica_HQ013093, [5] 6 Anthracocystis_chrysopogonis_AY344973_AY740131, [6] 7 Anthracocystis_elionuri_AY740157_AY740157, [7] 8 Anthracocystis_hwangensis_AY740051_AY740104, [8] 9 Anthracocystis_provincialis_AY344988_AY747076, [9] 10 Anthracocystis_sehimatis_HQ013110, [10] 11 Anthracocystis_themedaearguentis_AY344991_AY740140, [11] 12 Triodiomyces_triodiae_AY740074_AY740126, [12] 13 yeast_isolate_AB863531, [13] 14 yeast_isolate_AB726473, [14] 15 uncultured_soil_fungus_clone_DQ421310, [15] 16 Anthracocystis_gayana_JN872445_JN872445, [16] 17 Anthracocystis_pseudanthistiriae_JN367295_JN367320, [17] 18 Anthracocystis_sp_KF055231_KF055232, [18] 19 Anthracocystis_sp_KF055229_KF055230, [19] 20 Anthracocystis_polliniae_AY344987_AY740138, [20] 21 Anthracocystis_walkeri_JN367297_JN367322, [21] 22 yeast_isolate_JQ993391, [22] 23 yeast_isolate_JF292447_HQ641273, [23] 24 Anthracocystis_grodzinskae_KP297998_KP297996, [24] 25 Anthracocystis_grodzinskae_KP297999_KP297997, [25] 26 Anthracocystis_panicileucophaei_AY740035_AY740088, [26] 27 Anthracocystis_panicileucophaei_AY344986, [27] 28 Anthracocystis_panicileucophaei_AY998102, [28] 29 Anthracocystis_cenchri_AY344972_AF453943, [29] 30 Anthracocystis_formosana_AY344979_AY740134, [30] 31 Anthracocystis_destruens_AY344976_AY747077, [31] 32 Anthracocystis_destruens_AF045871, [32] 33 yeast_isolate_AM160638, [33] 34 Anthracocystis_flocculosa_DQ411535_AY745712, [34] 35 Anthracocystis_flocculosa_AB089364_AB089365, [35] 36 uncultured_fungus_clone_JX389323, [36] 37 Anthracocystis_mutabile_HQ013105, [37] 38 Anthracocystis_trispicatae_HQ013113, [38] 39 Anthracocystis_loudetiaepedicellatae_AY740053_AY740106, [39] 40 Anthracocystis_mexicana_AY998101, [40] 41 Anthracocystis_heteropogonicola_HQ013101_HQ013135, [41] 42 Ustilaginales_sp_EF060953, [42] 43 Ustilaginales_sp_EF060922, [43] 44 Ustilaginales_sp_EF060955, [44] 45 Ustilaginaceae_sp_EF060742, [45] 46 Ustilaginales_sp_EF060455, [46] 47 Anthracocystis_setariae_HQ013111, [47] 48 Anthracocystis_whiteochloae_HQ013115, [48] 49 Anthracocystis_cenchrielymoidis_HQ013094_HQ013122, [49] 50 Anthracocystis_xerofasciculata_HQ013117, [50] 51 Anthracocystis_andrewmitchellii_NR120127_JQ995370, [51] 52 Anthracocystis_ovaria_AY740020_AJ236137, [52] 53 Anthracocystis_penniseti_AY344971_AY740130, [53] 54 Anthracocystis_anthracoideispora_JN367290_JN367315, [54] 55 Anthracocystis_enteromorpha_AY740158_AY740158, [55] 56 Anthracocystis_apludae_AY344983_AY740136, [56] 57 Anthracocystis_bothriochloae_HQ013092, [57] 58 Langdonia_confusa_HQ013095_HQ013132, [58] 59 Anthracocystis_fallax_AY333941, [59] 60 Anthracocystis_fallax_AY333942, [60] 61 Anthracocystis_fallax_AY333940, [61] 62 Anthracocystis_tumefaciens_AY344969_AY740128, [62] 63 Anthracocystis_tumefaciens_AY333943, [63] 64 Anthracocystis_tumefaciens_AY333944, [64] 65 Anthracocystis_tumefaciens_AY333945; TREE con_50_majrule = (1:0.016256,2:0.038801,(3:0.016806,(4:0.013156,5:0.027648,6:0.00908,7:0.044478,8:0.052695,9:0.041183,10:0.002349,11:0.017708,12:0.130563,13:0.011637,14:0.008936,15:0.017784,16:0.015711,17:0.057433,(18:0.001643,19:0.002793)1.00:0.196526,(20:0.046058,21:0.014017)1.00:0.017091,(22:0.005981,23:0.047091)1.00:0.14067,(24:0.001574,25:0.000915)1.00:0.041443,((26:0.006048,27:0.005735,28:0.002077)1.00:0.020843,(29:0.042594,(30:0.011927,(31:0.000945,32:0.007024)1.00:0.020904)1.00:0.03608)0.72:0.016647)0.99:0.022457,(33:0.014745,(34:0.002305,35:0.002347,36:0.006312)1.00:0.010349)0.96:0.012974,(37:0.021624,38:0.036986)0.71:0.019122,(39:0.018447,40:0.142767)0.67:0.018421,(41:0.033777,(42:0.012459,43:0.063881,44:0.0153,(45:0.038658,46:0.94762)0.62:0.035055)0.62:0.08383)0.60:0.033665,(((47:0.011336,48:0.001397)1.00:0.034587,(49:0.031417,(50:0.017411,51:0.027462)1.00:0.015781)0.63:0.010018)1.00:0.024446,(52:0.013762,53:0.023208,(54:0.08371,55:0.25329)0.80:0.019783)0.72:0.009964)0.59:0.01295,(56:0.044486,57:0.066824)0.58:0.01328,(58:0.231014,((59:0.003038,(60:0.001289,61:0.00135)0.82:0.003712)1.00:0.089685,(62:0.005549,(63:0.004922,(64:0.002692,65:0.003408)0.95:0.004751)0.90:0.005481)1.00:0.030596)0.73:0.028553)0.51:0.041788)0.59:0.004745)1.00:0.021082); TREE con_50_majrule = (1:0.016256,2:0.038801,(3:0.016806,(4:0.013156,5:0.027648,6:0.00908,7:0.044478,8:0.052695,9:0.041183,10:0.002349,11:0.017708,12:0.130563,13:0.011637,14:0.008936,15:0.017784,16:0.015711,17:0.057433,(18:0.001643,19:0.002793):0.196526,(20:0.046058,21:0.014017):0.017091,(22:0.005981,23:0.047091):0.14067,(24:0.001574,25:0.000915):0.041443,((26:0.006048,27:0.005735,28:0.002077):0.020843,(29:0.042594,(30:0.011927,(31:0.000945,32:0.007024):0.020904):0.03608):0.016647):0.022457,(33:0.014745,(34:0.002305,35:0.002347,36:0.006312):0.010349):0.012974,(37:0.021624,38:0.036986):0.019122,(39:0.018447,40:0.142767):0.018421,(41:0.033777,(42:0.012459,43:0.063881,44:0.0153,(45:0.038658,46:0.94762):0.035055):0.08383):0.033665,(((47:0.011336,48:0.001397):0.034587,(49:0.031417,(50:0.017411,51:0.027462):0.015781):0.010018):0.024446,(52:0.013762,53:0.023208,(54:0.08371,55:0.25329):0.019783):0.009964):0.01295,(56:0.044486,57:0.066824):0.01328,(58:0.231014,((59:0.003038,(60:0.001289,61:0.00135):0.003712):0.089685,(62:0.005549,(63:0.004922,(64:0.002692,65:0.003408):0.004751):0.005481):0.030596):0.028553):0.041788):0.004745):0.021082); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1436602747907; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 5904353185664958135; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #5904353185664958135 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #5904353185664958135; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 392; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #5904353185664958135 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1967.1436602719354.8163957331205176822; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 392; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;