#NEXUS
[written Fri Jul 17 23:34:26 CST 2015 by Mesquite  version 3.03 (build 702) at gnot_nail-PC/192.168.1.107]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=8;
	TAXLABELS
		Zea_mays_PURU Sorghum_bicolor_PURU Oryza_sativa_PURU 'Setaria italica PURU-1' 'Setaria italica PURU-2' Arabidopsis_thaliana_PURU1 Arabidopsis_thaliana_PURU2 Escherichia_coli_PURU__ 
	;

END;


BEGIN CHARACTERS;
	TITLE  '10-FDF';
	DIMENSIONS  NCHAR=351;
	FORMAT DATATYPE = Protein GAP = - MISSING = ?;
	MATRIX
	Zea_mays_PURU               MVSLARRPLSAAVPAGNLLGIHLFRCPDAVGIVAKLSECIASRGGNIHSVDVFVPDDKPVFYSRSEFTYNPRLWPRHELHKDFLNLSRCFNAQTSTVRVPDLDPKYNISILASKQDHCLFDLLYRWQEGRLPVHINCVISNHDRPQDNHVRRFLQRHGIPYHYLPTAPANKREKEILELIQGTDFVVLARYMQILSENLLKAYGKDIINIHHGLLPSFKGGNPSRQAFSAGVKLIGATSHFVTPELDAGPIIEQMVERVSHRDTLQSFVVKSENLEKQCLAEAIKSYCELRVLPYELRKTVVF------------------------------------------------
	Sorghum_bicolor_PURU        MLSLARRPLSATVPAGNLLGIHLFQCPDAVGIVAKLSECIASRGGNIHSVDVFVPDDKPVFYSRSEFTYNPRLWPRHELHNDFLNLSRCFNAHTSTVRVPDLDPKYNISILASKQDHCLFDLLHRWQEGRLPLHISCVISNHDRPQDNHVRRFLQRHGIPYHYLPTAPGNKREQEILELIQGTDFVVLARYMQILSESFLKAYGKDIINIHHGLLPSFKGGSPSRQAFNAGVKLIGATSHFVTQELDAGPIIEQMVERVSHRDTLQSFVVKSENLEKQCLAEAIKSYCELRVLPYELKKTVVF------------------------------------------------
	Oryza_sativa_PURU           MLSVARRPLSAAVPVGNLLGIHLFQCPDTVGIVARLSECIASRGGNIHSVDVFVPDDKPVFYSRSEFTYNPMLWPRDVLRTDFLNLSQHFSAQRSTVRVPDLDPKYKISVLASKQDHCLFDLLYRWQEGRLPVDINCVISNHDRLKDNHVRRFLERHGIPYHYLPTSPGNKREQEILELVQGTDFVVLARYMQILSEGFLKAYGKDIINIHHGLLPSFKGGNPSRQAFNAGVKLIGATSHFVTPELDAGPIIEQMVERVSHRDTLQSFVVKSENLEKQCLAEAIKSYCELRVLPYELKKTVVF------------------------------------------------
	'Setaria italica PURU-1'    MPRPFGDRQMMSSARRPLSAAAGNLLGIHLFQCPDAVGIVAKVSECIASRGGNIHRVDVFVPDDKPVFYSRSEFTYNPRLWPRDDLRKDFLNLSCCFGAQRSTVRVPDLDPKYKIAVLASKQDHCLFDLLHRWQEGRLPVDINCVISNHDRPQDNHVRRFLQRHAIPYYYLPTTPGNKREQEILELIQGTDFVVLARYMQIMSESFLKAYGKDIINIHHGLLPSFKGGHPSRQAFNAGVKLIGATSHFVTPELDAGPIIEQMVERVSHRDTLQSFVVKSENLEKQCLAEAIKSYCELRVLPYELKKTVVF-----------------------------------------
	'Setaria italica PURU-2'    MPCHASSFWRQTDDVLGAPAALRRRRQPPRHPSLPVPRRRRHRRQGVRVHRLPRRQHPQSRRLRPRRQARLLLPQVSSPSLPPILSIIYICSSCSTITMQYISNTCPCIDGSEFTYNPRLWPRDDLRKDFLNLSCCFGAQRSTVRVPDLDPKYKIAVLASKQDHCLFDLLHRWQEGRLPVDINCVISNHDRPQDNHVRRFLQRHAIPYYYLPTTPGNKREQEILELIQGTDFVVLARYMQIMSESFLKAYGKDIINIHHGLLPSFKGGHPSRQAFNAGVKLIGATSHFVTPELDAGPIIEQMVERVSHRDTLQSFVVKSENLEKQCLAEAIKSYCELRVLPYELKKTVVF-
	Arabidopsis_thaliana_PURU1  MIRRITERASGFAKNIPILKSSRFHGESLDSSVSPVLIPGVHVFHCQDAVGIVAKLSDCIAAKGGNILGYDVFVPENNNVFYSRSEFIFDPVKWPRSQVDEDFQTIAQRYGALNSVVRVPSIDPKYKIALLLSKQDHCLVEMLHKWQDGKLPVDITCVISNHERASNTHVMRFLERHGIPYHYVSTTKENKREDDILELVKDTDFLVLARYMQILSGNFLKGYGKDVINIHHGLLPSFKGGYPAKQAFDAGVKLIGATSHFVTEELDSGPIIEQMVESVSHRDNLRSFVQKSEDLEKKCLTRAIKSYCELRVLPYGTNKTVVF----------------------------
	Arabidopsis_thaliana_PURU2  MIRRVSTTSCLSATAFRSFTKWSFKSSQFHGESLDSSVSPLLIPGFHVFHCPDVVGIVAKLSDCIAAKGGNILGYDVFVPENKNVFYSRSEFIFDPVKWPRRQMDEDFQTIAQKFSALSSVVRVPSLDPKYKIALLLSKQDHCLVEMLHKWQDGKLPVDITCVISNHERAPNTHVMRFLQRHGISYHYLPTTDQNKIEEEILELVKGTDFLVLARYMQLLSGNFLKGYGKDVINIHHGLLPSFKGRNPVKQAFDAGVKLIGATTHFVTEELDSGPIIEQMVERVSHRDNLRSFVQKSEDLEKKCLMKAIKSYCELRVLPYGTQRTVVF-----------------------
	Escherichia_coli_PURU__     MHSLQRKVLRTICPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTELEGIFNDSTLLADLDSALPEGSVRELNPAGRRRIVILVTKEAHCLGDLLMKANYGGLDVEIAAVIGNHDTLRSLVERFDIPFELVSHEGLTRNEHDQKMADAIDAYQPDYVVLAKYMRVLTPEFVARFPNKIINIHHSFLPAFIGARPYHQAYERGVKIIGATAHYVNDNLDEGPIIMQDVIHVDHTYTAEDMMRAGRDVEKNVLSRALYKVLAQRVFVYGNRTIIL-----------------------------------------------------------------------

;


END;

BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED  (CHARACTERS = '10-FDF')  =  unord:  1 -  351;

END;

BEGIN NOTES;

	TAXABITS   TAXA = Taxa NAME = newlyAddedTaxon on =  1 -  8;

END;

BEGIN CODONS;
	CODESET * UNTITLED  (CHARACTERS = '10-FDF')  =  universal:  1 -  351;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED  (CHARACTERS = '10-FDF')  =  'Mk1 (est.)':  1 -  351;
END;

Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		timeSaved 1437147266506;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			setID 0 7820838868746503911;
		endTell;
		getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
		tell It;
			setID 0 8483612030457227838;
			mqVersion 303;
			checksumv 0 3 4082795669 null  getNumChars 351 numChars 351 getNumTaxa 8 numTaxa 8   short false   bits 1048575   states 1048575   sumSquaresStatesOnly 2.7471194175079E13 sumSquares 2.7471194175079E13 longCompressibleToShort false usingShortMatrix false   NumFiles 1 NumMatrices 1;
			mqVersion;
		endTell;
		getWindow;
		tell It;
			suppress;
			setResourcesState false false 100;
			setPopoutState 400;
			setExplanationSize 0;
			setAnnotationSize 0;
			setFontIncAnnot 0;
			setFontIncExp 0;
			setSize 700 464;
			setLocation 8 8;
			setFont SanSerif;
			setFontSize 10;
			getToolPalette;
			tell It;
			endTell;
			desuppress;
		endTell;
		getEmployee  #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord;
		tell It;
			showDataWindow #8483612030457227838 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker;
			tell It;
				getWindow;
				tell It;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					setSize 600 392;
					setLocation 8 8;
					setFont SanSerif;
					setFontSize 10;
					getToolPalette;
					tell It;
					endTell;
					setActive;
					setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow;
					colorCells  #mesquite.charMatrices.ColorByState.ColorByState;
				tell It;
					setStateLimit 9;
					toggleUniformMaximum on;
				endTell;
					colorRowNames  #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor;
					colorColumnNames  #mesquite.charMatrices.CharGroupColor.CharGroupColor;
					colorText  #mesquite.charMatrices.NoColor.NoColor;
					setBackground White;
					toggleShowNames on;
					toggleShowTaxonNames on;
					toggleTight off;
					toggleThinRows off;
					toggleShowChanges off;
					toggleSeparateLines off;
					toggleShowStates on;
					toggleAutoWCharNames off;
					toggleAutoTaxonNames off;
					toggleShowDefaultCharNames off;
					toggleConstrainCW on;
					toggleBirdsEye off;
					toggleShowPaleGrid off;
					toggleShowPaleCellColors off;
					toggleShowPaleExcluded off;
					togglePaleInapplicable on;
					toggleShowBoldCellText off;
					toggleAllowAutosize off;
					toggleColorsPanel off;
					toggleLinkedScrolling on;
					toggleScrollLinkedTables off;
				endTell;
				showWindow;
				getWindow;
				tell It;
					forceAutosize;
				endTell;
				getEmployee #mesquite.charMatrices.ColorCells.ColorCells;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel;
				tell It;
					togglePanel off;
				endTell;
				getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector;
				tell It;
					autotabOff;
				endTell;
				getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.align.AlignToDropped.AlignToDropped;
				tell It;
					gapCosts 8 3 2 2;
					subCosts  5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5;
				endTell;
				getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor;
				tell It;
					panelOpen false;
				endTell;
			endTell;
		endTell;
		endTell;
end;