#NEXUS
[written Fri Jul 17 23:52:56 CST 2015 by Mesquite  version 3.03 (build 702) at gnot_nail-PC/192.168.1.107]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=20;
	TAXLABELS
		Zea_mays_GCSH1 Sorghum_bicolor_GCSH1 Setaria_italica_GCSH1 Setaria_italica_GCSH4 Setaria_italica_GCSH3 Oryza_sativa_GCSH Arabidopsis_thaliana_GCSH1 Arabidopsis_thaliana_GCSH3 Zea_mays_GCSH2 Zea_mays_GCSH3 Zea_mays_GCSH4 Sorghum_bicolor_GCSH2 Setaria_italica_GCSH2 Arabidopsis_thaliana_GCSH2 Escherichia_coli_GCSH__ Homo_sapiens_GCSH Mus_musculus_GCSH Rattus_norvegicus_GCSH 'Rattus norvegicus GCSH-2' Saccharomyces_cerevisiae_GCSH 
	;

END;


BEGIN CHARACTERS;
	TITLE  GDCH;
	DIMENSIONS  NCHAR=177;
	FORMAT DATATYPE = Protein GAP = - MISSING = ?;
	MATRIX
	Zea_mays_GCSH1                 MALRMWASSAANALKLSAGGAGARAAAFSISRFFSTVHDGLKYTQSHEWVKTTGDVATVGITDHAQGHLGEVVFVELPEPGTKVAAGGPFGNVESVKATSDVNSPISGEVVEVNAKLSETPGLINTSPYEDGWMIKVKPSSPGEADALLDAAKYTKHCEEEDAH-------------
	Sorghum_bicolor_GCSH1          MALRLWASSAANALKLSGTAGACGASAAAPAFALSISRFFSTVHDGLKYTQSHEWVKTADGVATVGITDHAQDHLGEVVFVELPEPGTTVSAGASFGNVESVKATSDVNSPISGEVVEVNSKLSETPGLINTSPYEDGWMIKVKPSSPGEADVLLDAAKYTKHCEEEDAH-------
	Setaria_italica_GCSH1          MALRLWASSAAKALKLSGARAVAPAFSISRFFSTVHDGLKYTHSHEWVKHHEDGVVTVGITDHAQSHLGEVVFVELPEAGAQVSAGGSFGNVESVKATSDVNSPISGEVVEVNSKLSETPGLINSSPYEDGWMIKVKPSSPGEADGLLDAAKYTKHCEEEDAH--------------
	Setaria_italica_GCSH4          MEPPSGFWASLLSFLKFLPYSCGLLILGFIKARDWNFDSDGAFEGSSHSDCAFGDSDVMKDLKYADTHEWVKVEGDSATDHLGDVVYVELPEVDISVSQGKNFGAVESVKATSDINSPVSGEVVEVNEKLSEEPGLVNASPYDKGWIIKVKLSDSDNGGS-----------------
	Setaria_italica_GCSH3          MNIFVTVALLLPLQFVSHLMLCIFLVLTHFFPSVLKDLKYADTHEWVKVEDGSATIGITDHAQCYFWGFQDHLGDVVYVELPEVGNSVYQVKKFGAVERVKATSDINSPVSGEVVEVNGKLSEEPGLVNASSYDHGWIIKVKLSDSGELSSLMDDEKYLKFCEEEDKH---------
	Oryza_sativa_GCSH              MALRLWASSAANALKISCSGATRAAPAYSISRYFSTVLDGLKYSSSHEWVKNDGSVATIGITDHAQGHLGEVVFVELPEAGAKVSQGGAFGNVESVKATSDINSPISGEVVEVNDKLSETPGLINSSPYEDGWMIKVKPSSPSELDALLDPAKYTKHCEEEDAH-------------
	Arabidopsis_thaliana_GCSH1     MALRMWASSTANALKLSSSVSKSHLSPFSFSRCFSTVLEGLKYANSHEWVKHEGSVATIGITAHAQDHLGEVVFVELPEDNTSVSKEKSFGAVESVKATSEILSPISGEIIEVNKKLTESPGLINSSPYEDGWMIKVKPSSPAELESLMGPKEYTKFCEEEDAAH------------
	Arabidopsis_thaliana_GCSH3     MALRMWASSTANALKLSSSASKSHLLPAFSISRCFSSVLEGLKYANSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEANSSVSKEKSFGAVESVKATSEILSPISGEVIEVNTKLTESPGLINSSPYEDGWMIKVKPSSPAELEALMGPKEYTKFCEEEDAAH-----------
	Zea_mays_GCSH2                 MAMAAASSRLFWASRAAAYLRISTFPRAFATVLKDLKYADTHEWVKVEGDSATVGITDHAQDHLGDVVFVELPEVGISVSQGKNFGAVESVKATSDINSPVSGEVVEVNEKLSEEPGLVNASPYEKGWIIKVKLSNSGDLNSLMDDDKYSKFCEEEDNH------------------
	Zea_mays_GCSH3                 MAMAAASRSRALWASRAAAYLRISTFPRAFSTVLKDLKYADTHEWVKVEGDSATVGITDHAQDHLGDVVYVELPEVGVSVSQGKNFGAVESVKATSDINSPVSGEVVEVNRKLSEEPGLVNASPYEKGWIIKVKLSDSGELSSLMDGDKYSKFCEEEDGH-----------------
	Zea_mays_GCSH4                 MATSGGGWTGMQREREERGRDDQRNGGCLCGFPDHSSDAVYVELPEVGVSVSQGKNFGAVESVKATSDINLPVSGEVVEVNGKLSEEPGLVNASPYEKGWIIKVKLSDSGELSSLMDGDKYSKFCKEEDAGIPHLKWFGVEGQYNVMVIDLLGPSLKDLFNYCSRKFSLKTVLMLAD
	Sorghum_bicolor_GCSH2          MAMAASSRLLWASRAAAYLRISTFPRAFSTVLKDLKYADTHEWVKVEGDSATVGITDHAQDHLGDVVYVELPEVGISVSQGKNFGAVESVKATSDINSPVSGEVVEVNNKLSEEPGLVNASPYEKGWIIKVKLSDSGELNSLMNDEKYSKFCEEEDNH-------------------
	Setaria_italica_GCSH2          MAMAASSRLMWASRAAAYLRISTFPRAFSTVMKDLKYADTHEWVKVEGDSATVGITDHAQDHLGDVVYVELPEVGISVSQGKNFGAVESVKATSDINSPVSGEVVEVNEKLSEEPGLVNASPYDKGWIIKVKLSDSGELNSLMDDEKYSKFCEEEDNH-------------------
	Arabidopsis_thaliana_GCSH2     MACRLFWASRVASHLRISVAQRGFSSVVLKDLKYADSHEWVKIDGNKATFGITDHAQDHLGDVVYVELPDVGHSVSQGKSFGAVESVKATSDINSPVSGKVVEVNEELTESPGLVNSSPYEQGWIIKVELSDAGEAEKLMDSDKYSKFCEEEDAKH---------------------
	Escherichia_coli_GCSH__        MSNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE------------------------------------------------
	Homo_sapiens_GCSH              MALRVVRSVRALLCTLRAVPSPAAPCPPRPWQLGVGAVRTLRTGPALLSVRKFTEKHEWVTTENGIGTVGISNFAQEALGDVVYCSLPEVGTKLNKQDEFGALESVKAASELYSPLSGEVTEINEALAENPGLVNKSCYEDGWLIKMTLSNPSELDELMSEEAYEKYIKSIEE----
	Mus_musculus_GCSH              MSLQVSRSLRVVAYSLRTALTFCSPRPCVPSAAAVRSLRTGSALLSVRKFTEKHEWITTEEGIGTVGISNFAQEALGDVVYCSLPEVGTKLKKQEEFGALESVKAASELYSPLSGEVTEVNEALAENPGLVNKSCYEDGWLIKMTLSDPSEMDELMSEEAYEKYVKSIEE-------
	Rattus_norvegicus_GCSH         MSLRVVRSVRAVACSLRIALASCPPRPWAPSAAAVRSLRTGSALLSVRKFTEKHEWVTAKDGIGTVGISNFAQEALGDVVYCSLPEVGTKLKKQEEFGALESVKAASELYSPLSGEVTEVNEALAENPGLVNKSCYEDGWLIKMTLSDPSELDELMSEEAYEKYVKSIEE-------
	'Rattus norvegicus GCSH-2'     MSLRVVRSVRAVALQPALSPWPPCPPRPWRRALAAVRSLRTGSALLSVRKFTEKHEWVTAKDGIGTVGISNFAQEALGDVVYCSLPEVGTKLKKQEEFGGLESVKAASELYSPLSGEVTEVNEALPENPGLVNKSMYEDGWLIKMTLSDPSELDELMSEEAYEKYVKSN--------
	Saccharomyces_cerevisiae_GCSH  MLRTTRLWTTRMPTVSKLFLRNSSGNALNKNKLPFLYSSQGPQAVRYTSQHEWIAVHQDKTAFVGITKYATDALGDATYVELPEVGTEIAQGESLGSIESVKSASEIYQPADGTVEEINTNLEENPGVVNEDPMGDGWLVKMKLGEGVNVEQVEGLMSLEQYEKTLVHDD-------

;


END;

BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED  (CHARACTERS = GDCH)  =  unord:  1 -  177;

END;

BEGIN NOTES;

	TAXABITS   TAXA = Taxa NAME = newlyAddedTaxon on =  1 -  20;

END;

BEGIN CODONS;
	CODESET * UNTITLED  (CHARACTERS = GDCH)  =  universal:  1 -  177;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED  (CHARACTERS = GDCH)  =  'Mk1 (est.)':  1 -  177;
END;

Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		timeSaved 1437148376275;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			setID 0 3793664289387145221;
		endTell;
		getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
		tell It;
			setID 0 5251491225981173680;
			mqVersion 303;
			checksumv 0 3 1168529193 null  getNumChars 177 numChars 177 getNumTaxa 20 numTaxa 20   short false   bits 1048575   states 1048575   sumSquaresStatesOnly 3.5322558318917E13 sumSquares 3.5322558318917E13 longCompressibleToShort false usingShortMatrix false   NumFiles 1 NumMatrices 1;
			mqVersion;
		endTell;
		getWindow;
		tell It;
			suppress;
			setResourcesState false false 100;
			setPopoutState 400;
			setExplanationSize 0;
			setAnnotationSize 0;
			setFontIncAnnot 0;
			setFontIncExp 0;
			setSize 700 464;
			setLocation 8 8;
			setFont SanSerif;
			setFontSize 10;
			getToolPalette;
			tell It;
			endTell;
			desuppress;
		endTell;
		getEmployee  #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord;
		tell It;
			showDataWindow #5251491225981173680 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker;
			tell It;
				getWindow;
				tell It;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					setSize 600 392;
					setLocation 8 8;
					setFont SanSerif;
					setFontSize 10;
					getToolPalette;
					tell It;
					endTell;
					setActive;
					setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow;
					colorCells  #mesquite.charMatrices.ColorByState.ColorByState;
				tell It;
					setStateLimit 9;
					toggleUniformMaximum on;
				endTell;
					colorRowNames  #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor;
					colorColumnNames  #mesquite.charMatrices.CharGroupColor.CharGroupColor;
					colorText  #mesquite.charMatrices.NoColor.NoColor;
					setBackground White;
					toggleShowNames on;
					toggleShowTaxonNames on;
					toggleTight off;
					toggleThinRows off;
					toggleShowChanges off;
					toggleSeparateLines off;
					toggleShowStates on;
					toggleAutoWCharNames off;
					toggleAutoTaxonNames off;
					toggleShowDefaultCharNames off;
					toggleConstrainCW on;
					toggleBirdsEye off;
					toggleShowPaleGrid off;
					toggleShowPaleCellColors off;
					toggleShowPaleExcluded off;
					togglePaleInapplicable on;
					toggleShowBoldCellText off;
					toggleAllowAutosize off;
					toggleColorsPanel off;
					toggleLinkedScrolling on;
					toggleScrollLinkedTables off;
				endTell;
				showWindow;
				getWindow;
				tell It;
					forceAutosize;
				endTell;
				getEmployee #mesquite.charMatrices.ColorCells.ColorCells;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel;
				tell It;
					togglePanel off;
				endTell;
				getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector;
				tell It;
					autotabOff;
				endTell;
				getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.align.AlignToDropped.AlignToDropped;
				tell It;
					gapCosts 8 3 2 2;
					subCosts  5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5;
				endTell;
				getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor;
				tell It;
					panelOpen false;
				endTell;
			endTell;
		endTell;
		endTell;
end;