#NEXUS [written Mon Jun 13 14:51:03 ART 2015 by Mesquite version 1.03 (build g19)] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=26; TAXLABELS Anthaenantia_lanata Panicum_repens Megaloprotachne_albescens Digitaria_brownii Digitaria_californica_VarCal Digitaria_californica_VarVil Digitaria_catamarcensis Digitaria_ciliaris Digitaria_eggersii Digitaria_eriantha Digitaria_eriostachya Digitaria_gerdesii Digitaria_hitchcockii Digitaria_insularis Digitaria_laxa Digitaria_milanjiana Digitaria_neesiana Digitaria_phaeothrix Digitaria_pittieri Digitaria_sacchariflora Digitaria_sanguinalis Digitaria_similis Digitaria_swalleniana Digitaria_velutina Digitaria_patens Digitaria_tenuis ; END; BEGIN CHARACTERS; TITLE Continuous_Characters; DIMENSIONS NCHAR=7; FORMAT DATATYPE = CONTINUOUS; MATRIX Anthaenantia_lanata 0.0 0.95 0.427 0.647 ? ? ? Panicum_repens 0.0 0.8 1.123 1.752 ? ? ? Megaloprotachne_albescens 0.0 0.45 0.9315 0.213 3.75 1.6 ? Digitaria_brownii 0.0 0.15 2.075 2.369 3.25 0.95 1.1 Digitaria_californica_VarCal 0.0 0.75 1.6885 1.855 3.75 1.125 0.75 Digitaria_californica_VarVil 0.0 0.75 1.6885 1.855 3.75 1.125 0.75 Digitaria_catamarcensis 0.0 0.8 2.4085 2.687 6.45 1.3335 1.35 Digitaria_ciliaris 0.0 0.5 1.8935 2.078 3.15 0.75 0.95 Digitaria_eggersii 0.0 0.15 1.252 1.375 2.85 0.75 1.2 Digitaria_eriantha 0.0 0.85 1.647 1.858 3.0 1.0 1.5 Digitaria_eriostachya 0.0 0.6 1.814 1.94 2.6 0.85 1.5 Digitaria_gerdesii 0.0 0.1 3.775 3.687 2.6 1.2 0.9 Digitaria_hitchcockii 0.0 0.55 1.31 1.5325 2.6 0.95 0.8 Digitaria_insularis 0.0 3.5 1.4115 1.576 4.1 0.85 0.85 Digitaria_laxa 0.0 2.0 0.9125 1.0675 4.75 0.8 1.0 Digitaria_milanjiana 0.0 0.9 0.203 0.5345 3.0 0.85 1.0 Digitaria_neesiana 0.0 0.6 0.2565 0.557 3.75 1.5 3.0 Digitaria_phaeothrix 0.0 1.35 3.523 3.8835 3.5 1.1 1.9 Digitaria_pittieri 0.0 1.55 1.408 1.826 3.25 0.975 1.3 Digitaria_sacchariflora 0.0 0.9 1.8455 1.985 4.75 1.35 1.1 Digitaria_sanguinalis 0.0 0.55 1.525 1.88 3.05 1.15 0.95 Digitaria_similis 0.0 1.0 1.451 1.6875 5.0 0.75 1.25 Digitaria_swalleniana 0.0 1.05 1.382 1.611 4.9 0.75 0.625 Digitaria_velutina 0.0 0.65 0.3935 1.101 1.9 0.55 ? Digitaria_patens 0.0 0.55 1.452 1.701 3.1 0.8 1.0 Digitaria_tenuis 0.0 0.6 1.796 2.0585 2.85 0.725 1.0 ; END; BEGIN CHARACTERS; TITLE Morphological_Characters; DIMENSIONS NCHAR=115; FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1 2 3 4"; MATRIX Anthaenantia_lanata 000000000100????31201{0,1}0102111?00100010010000{0,1,2}011100200001?11000001010?001100011?0000?{0,1}110?112110110000010000?1?010? Panicum_repens ???????10001220{0,2}31200?1003110?000021020000{1,2}0211??00000001?11000001110?01111000002201?0010?11{0,2}101110210?100110001200 Megaloprotachne_albescens 000000110121402011111000031112011020011111131010000110021110101001020100000020?1?10?0110011100010111102000010000100 Digitaria_brownii 000010101121100{1,2}1120100002011300001001111022001{1,2}000000021{0,1}?0000001110100111000{0,1}1{1,2}00100010100{0,1}001?11120?1?00?00{0,1}?101 Digitaria_californica_VarCal 0000{0,1}0{0,1}001211002102110000201120010100111102100{0,1}001010002111000000111010001100001100001011100000101112{0,1}01000?0000111 Digitaria_californica_VarVil 0000{0,1}0{0,1}001211002102110000201120010100111102100{0,1}001010002111000000111010001100001100001011100000101112{0,1}01000?0000111 Digitaria_catamarcensis 0000110011212002102110000201120010100111102100000101000211100000011101000110000121010000210000010101200001010001111 Digitaria_ciliaris 0000000111211002111110000211110011100111001001100011{1,2}002{0,1}1{0,1}01001011001000011001???0?0{0,1}01210010010101200011110100101 Digitaria_eggersii 000000100121100211101000021111000010011110110000000000021{0,1}00000001100100011100011000010110000001000011?1?0??00011?? Digitaria_eriantha 00000001112110021111100102111100001001110010011000112002{0,1}110100101100100011{0,2}00{0,1}100100{0,1}00110000000111200000010000111 Digitaria_eriostachya 00000011112{0,1}0002{1,2}120100{0,1}0201110010100111021101100?{0,1}1000211101000011101000?{0,1}1001????10{0,1}001100100010012000?1010?0110? Digitaria_gerdesii 220002011121000231201000021113000000011111100??000???0021{0,1}?0?00??111020101000?1?00000101000000001101010111110100100 Digitaria_hitchcockii 0000001001212002112110000111130000100111101000100001000211?000000111010001100001100001010100000101{0,1}010?10{0,1}1?0000111 Digitaria_insularis 000011000121{1,2}00210{1,2}11000020111001010011110{1,2}10110010100021110000001110100011000011000010{0,1}1100000001112{0,1}0{0,1}00110001111 Digitaria_laxa 00000100012120020111120??201101000100111101101010011000211110100011101000110000?200001002100100{0,1}00112000000?0010111 Digitaria_milanjiana 00000001112010121010100002011110100000110?1000???011200201101000011002000?110011??1?00?12000000?011010?000110?01100 Digitaria_neesiana 11002201112100021211100002111100100000110110001??001{0,2}0021111100001120200110001?10100000101000100110010?10001001110? Digitaria_phaeothrix 1100020111210002111110000211110020100111011000000011{0,1}0021110100001110200{0,1}100000{0,1}000001000110211{0,1}1{0,1}020020{0,1}0010{0,1}00100 Digitaria_pittieri 00000010012110021111100002111100011001110011000000{0,1}1100211100000011001000?1{0,1}00?1??0001012000100{0,1}01102101000?000011? Digitaria_sacchariflora 000011000121200211{1,2}11000020111001010011110110100000100021110000001110100011000011000?000010000000110200011010000111 Digitaria_sanguinalis 00000001112110021111100002111110111001111012011000112002{0,1}110100101100100001{0,1}001????00101{0,2}100{0,1}0000110110100010000101 Digitaria_similis 0000110001212002{1,2}12110000201100000100111102100000101000211100000011101000110000110010000110000000111200000110000111 Digitaria_swalleniana 00001100012110021111100002011000001001111021000000010002111000000111010001100001210001012000000{0,1}0{0,1}101101001?0001110 Digitaria_velutina 020000000121201211111000011111000010011100100?100000000211101020011001000011101???000111110010000011000100000000100 Digitaria_patens 0000101011211002102110000201120010100111101200100100100211100000011111001110000110000{0,1}01000000010110{1,2}0010{0,1}{0,1}?000{0,1}100 Digitaria_tenuis 000000100121100211211000020111000010011110110000000100021{0,1}?{0,1}0000011101000110000110000{0,1}01210000000110210100010000111 ; END; BEGIN CHARACTERS; TITLE DNA_Characters; DIMENSIONS NCHAR=621; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Anthaenantia_lanata TG?ACCTGCGG?AGGATCATTGTCGTGACCCTTAAACAAAACTGACCGTGAACGTGTTGCCTATGCTGCCGGTCTT?AGGATTGGCAAAGGCCCTGA???TCACCCAACTTGGATGAGAGGGGCCTCAACAGAACTCACGGCGCCAAAGGCGTCAAGGAACACTAATATTGCC?TGCGAGGGG??TTCGGTTAGCTTGCTGGCCTAA??CTTTAGCAGCGATGATATGTCAATCCAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTTAAGGGCACGTCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?AACCCCCGAGGTAAGGGACGTGGCGTTT?GGCCCCCCATGCCGAAGGGCATGGTGAGCCGAAGTTCGGGCTGCTGGTGTATCATACCATGCACC?GCACGTGGTGGGCGACACAAAGTTGTTCTCGGTGCAGTGCGTTGGTATGTAGCTAGCTTATTGGCCCCAAGGACCCAA??ATTACCGCAGCACAAATTATTGCTCGGACC? Panicum_repens TGAACCTGCGGAAGGATCATTGTCGTGACCCTTGAACAAAACAGACCGTGAACGTGTCATCCATGTCGTCGGAGTA?CGGTTCGGCAAAGGCCCCCCACCTTCT?TA???CGTTGGAGAGGGGCCACCAAAGAACCCACGGCGCCGAAGGCGTCAAGGATCACTGATATTGCCATGTTCGGGG?TCATGTTTGGCCTGCCGATCATG?CCTCGCGCAATGTTGCTATCTTAATCCACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTTGAGGGCACGTCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCACCCTCAGGGACGGACGTGGTGTTT?GGCTCCCCGTGCCTTGTCGCATGGTGGGCTGAAGTTAGGTCTGCCGGCATACCGTGTCGGGCACCGGCATGTGGTGGGCGACAT?AAGTTGTTCTCGATGCAGTGTCCCGGCACGCAGCTAGCTCCTTGGCCTAAATGACCCATTCACGACCGTAGCAT??CTCGACGCTCGGACC? Megaloprotachne_albescens TGAACCTGCGGAAGGATCATTGTCGTGACCC?TAAACAAAACCGACCGTGAACGTGTCATCAAAGTCGTCGAGCTT?CGGCTTGGCTTAGGCTCCCGCCTTCGTCT????CGGAGGAGA?GGGCCGCAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACT??TATTGCCTTGCTCTGGG?ATGTGGCCGGCGTGCTGGCCACG?CCCTGTGCAGCGATGCTATGTTAATCAACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGC?AAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCATCTAAGGGAGGGGACGTGGTGTTT?GGCCCCCTGTGCYACAAGGCGCGGTGGGCCGAAGTTGAGGCTGCCGGCATATCATGTCGGGCACC?GCACGTGGTGGGCGACATTAAGTTGTTCTCGGTGCAGCGCCCCGGCATGTAGCTAGCAT?TTGGCCTT?AGGACCCAT???CGACCGTAGCGG??TTCGCCGCTCGGACC? Digitaria_brownii ?????????????????????????????????????????????????????????????????????????????????TCGG?TAAGGCCCTCGACTTCGTCC????CGGAGGAGA?GGGCCGCAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACC??TATTGCCTTGCCTGGGG?ACGTGGCCGGCTTGCCGGACGCG?CCCCACGCAGCGATGCTATGTTAACCAACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGCCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAACCCCATCCAAGGGGAGGGACGTGGCGTTT?GGCCCCCCGTGCCGCAGGGCGCGGTGGGCCGAAGTCGAGGCTGCCGGCGTACCGTGCCGGGCACC?GCACATGGTGGGCGACATCAAGTTGTTCTCGGTGCAGCGCCCCGGCACGTAGCCAGCGTGTTGGCCCTAAGGACCCAT???CGACCGTAGCGC??TT?GCCGCTCGGACC? Digitaria_californica_VarCal TGAA?CTGCGGAAGGATCATTGTCGTGACCC?TAAACAAAACAGACCGTGAACATGTCATCAAACTTGTCGGGCTT?CGGCTCGGCTAAGGCCCCCACCTTCGTCT????CGGAGGAGA?GGGCCGCAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACT??TATTGCATTGCTCGGGG?ATGTGGTCGGCCTGCCGGCCACAGCCTCGTGTAGCGATTCTATGTTAATCCACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCATCCAAGGGGAGGGACGTGGTGTTT?GGCCCCCCGTGCCGCAAGGTGCGGTGGGCCGAAGTTGAGGCTGCCGGCATACCGTGTCGGGCACC?GCACGTTGTGGGCGACATCAAGTTGTTCTCGGTGCAGCGCCCCGGCATGTAGCTAGCATGTTGGCCCTAAGGACCCAT???TGACCGTAGCGC??TTTGCCGCTCGGACC? Digitaria_californica_VarVil TGAACCTGCGGAAGGATCATTGTCGTGACCC?TAAACAAAACAGACCGTGAACATGTCATCAAACTCGTCGGGCTT?CGGCTCGGCTAAGGCCCCCACCTTCGTCT????CGGAGGAGA?GGGCCGCAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACT??TATTGCATTGCTCGGGG?ATGTGGTCGGCCTGCCGGCCACAGCCTCGTGTAGCGATTCTATGTTAATCCACACGACTRTCGGCAARGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCATCCAAGGGGAGGGACGTGGTGTTT?GGCCCCCCGTGCCGCAAGGTGCGGTGGGCCGAAGTTGAGGCTGCCGGCATACCGTGTCGGGCACC?GCACGTTGTGGGCGACATCAAGTTGTTCTCGGTGCAGCGCCCTGGCACGTAGCTAGCATGTTGGCCCTAAGGACTCAT???TGACCGTAGCGC??TTTGCCGCTCGGACC? Digitaria_catamarcensis TGAACCTGCGGAAGGATCATTGTCGTGACCC?TAAACAAAACAGACCGTGAACGTGTCATCAAACTCGTTGGGCTT?CGGCTCGGCTAAGGCCCTCGCCTTCGTTC????CGGAGGAGA?GGGCCACAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACT??TATTGCATTGCTCGGGG?ATGTGGTCGGCCTGCCGGCCGCAGCCTCGTGTAGCGATTCTATGTTAATCCACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTTTGGTCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCATCCAAGGGGAGGGACGTGGTGTTT?GGCCCCTCGTGCCGCAAGGTGCGGTGGGCCGAAGTTGAGGCTGCCGGCATACCGTGCCGGGCACC?GCACGTGGTGGGCGACATCTAGTTGTTCTCGGTGCAGCGCCCCGGCACTTAGCTAGCACGTTGGCCCTTAGGACCCAT???CGACCGTAGCGC??TTCGCCGCTCGGACC? Digitaria_ciliaris ??????????????????????TCGTGACCC?TAAACAAAACAGACTGTGAACGTGTCATCAAAGTCGTCGAGCTT?CGGCTCGGCTAAGGCCCTCGACTTCGTCC????CGGAGGAGA?GGGCCGCAAAAGAACCCAGGGCGCCGAAGGCGTCAAGGAACACT??TATTGCCTTGCTCGGGG?ATGTGGTTGGCTTGCCGGCCGCGCCCCCGTGCAGCGATGCTATGTAAACCAACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGAAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTCGAGGGCACGCCTGCCTGGGCGTCACGTCAAAAGACACTCCCAA?CCCATCCAAGGGGAGGGACGTGGTGTTT?GCCCTCCCGTCCCCCAAGGCGCGGTTGGCCGAAGTTGAGCCTCCCGGAATACCGTGTCGGGCCCC?GCACGTGGTGGGCGACTTCAAGTTGTTCTCGGTGCAGCCCCCCGGCACGTAGCTAGCGCGTT?GCCCTAAGGACCCAT???CGACCGTAGCGC??TT?GTTGCTCGGACC? Digitaria_eggersii TGAACCTGCGGAAGGATCATTGTCGTGACCC?TAAACAAAACAGACCGTGAACGTGTCATCAAACTCGTCGGGCTT?CGGCTCGGCTAAGGCCCTCGCCTTCGTCT????CGGAGGAGA?GGGCCGCAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACT??TATTGCATTGCACGGGGTGTGTGGTCGGCCTGCCGGCTGCAGCCTCGTGTAGCGATTCTATGTTAATCCACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTTTGGTTGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?ACCATCCAAGGGGAGGGACGTGGTGTTT?GGCCCCCCGTGCCGCAAGGCGCGGTGGGCCGAAGTTGAGGCTGC?GGCATACCGTGCCGGGCACC?GCACGTGGTGGGCGACATCAAGTTGTTCTCGGTGCAGCGCCCCGGCACGTAGCTAGCATGTTGGCCCTAAGGACCCAT???CGACCGTAGCGC??TTCGCCGCTCGGACC? Digitaria_eriantha TGAACCTGCGGAAGGATCATTGTCGTGACCC?TAAACAAAACAGACCGTGAACGTGTCATCGAAGTCGTCGGGCTT?CGGCTCGGCTAAGGCCCTCGACTTCGTCC????CGGAGGAGA?GGGCCGCAAAAGAACCCAGGGCGCCGAAGGCGTCAAGGAACACT??TATTGCCTTGCTCGGGG?ACGTGGTCGGCTTGCCGGCCGCG?CCCCGTGCAGCGATGCTATGTCAACCAACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCATCCAAGGGGAGGGACGTGGTGTTT?GGCCTCCCGTGCCGCAAGGTGCGGTTGGCCGAAGTTGAGGCTGCCGGCATACCGTGTCGGGCACC?GCACGTGGTGGGCGACTTCAAGTTGTTCTCGGTGCAGCGCCCCGGCACGTAGCTAGCGCGTTGGCCCTAAGGACCCAT???CGACCGTAGCGC??TG?GCCGCTCGGACC? Digitaria_eriostachya TG?ACCTGCGG?AGGATCATTGTCGTGACCC?TAAACAAAACAGACTGTGAACGTGTCATCAAAGTCGTCGGGCTT?CGGCTCGGCTAAGGCCCTCGACTTCGTCC????CGGAGGAGA?GGGCCGCAAAAGAACCCAGGGCGCCGAAGGCGTCAAGGAACACT??TATTGCCTTGCTCGGGG?ATGTGGCCGGCTTGCCGGCCGCGCCCCCGTGCAGCGATGCTATGTAAACCAACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTCGAGGGCACGCCTGCCTGGGCGTCACGTCAAAAGACACTCCCAA?CCCATCCAAGGGGAGGGACGTGGTGTTT?GGCCTCCCGTGCCGCAAGGCGCGGT??GTCGAAGTTGAGGCTGCCGGCATACCGTGTCGGGCACC?GCACGTGGTGGGCGACTTCAAGTTGTTCTCGGTGCAGCGCCCCGGCACGTAGCTAGCGTGTT?GCCCTAAGGACCCAT???CGACCGTAGCGC??TT?GCCGCTCGGACC? Digitaria_gerdesii TGAACCTGCGGAAGGATCATTGTCGTGACCA?TAAACAAAACAAACCGCGAACGTGTCATCAGTCTCGTCGGGCTTT?GGCTCGGCTAAGACYCCCGCCTTCGTCCCGGACGGAGGAGA?GGGCCGCAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACT??TATTGCCTTGCTCGGGG?ACGTGGTCGGCCTGCTGGCCACG?CCTCGCGCAGCGATGCTATGTTAAACAACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCGTCTGGTCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCATCCAAGGGGAGGGACGTGGTGTTT?GGCTCCTCGTGCCGCAAGGCGCGGTGGGCCGAAGTTGAGGCTGCCGGCATACCGTGCCGGGCACA?GCACGTGGTGGGCGACTTACAGTTGTTCTCGGTGCAGCGCCCCGGCACGTAGCTAGCAAGATGGCCACAAGGACCCAT???CGACCGTAGCGC??TTCGCCGCTCGGACC? Digitaria_hitchcockii TGAACCTGCGGAAGGATCATTGTCGTGACCC?TAAACAAAACAGACCGTGAACGTGTCATCAAAGTCGTCGGGCTT?CGGCTCGGCTAAGGCCCCCACCTTCGTCC????TGGAGGGGA?GGGCCGCAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACT??TATTGCCTTGCTCGGGG?ATGCGGTCGGCGTGCCGGCCGCA?CCCCGTGCAGCGATGCTATGTTAATCCACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCACCCAAGGGGAGGGACGTGATGTTT?GGCCCTCCGTGCCGCAAGGCGCGGTGGGCCGAAGTTGAGGCTGCCGGCATACCGTGCCGGGCACC?GCACATGGTGGGCGACATCAAGTTGTTCTCGGTGCAGCGCCTCGGCACATAGCTAGCATGTTGGCCCTAAGGACCCAT???CCACCGTAGCGC??TTCGTCGCTCGGACC? Digitaria_insularis TGAGCCTGCGG?AGGATCATTGTCG?GACCC?TAAACAAAACAGACCGTGAACGTGTCATCAAACTCGTCGGGCTT?CGGCTCGGCTAAGGCCCTCGCCTTCGTTT????CGGAGGAGA?GGGCCACCAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACT??TATTGCATTGCTCGGGG?ATGTGGTCGGCCTGCCGGCTGCAGCCTCGTGTAGCGATTCTATGTTAATCCACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTTTGGTTGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCATCCAAGGGGAGGGACGTGGTGTTT?GGCCCCCTGTGCCGCAAGGCGCGGTGGGCCGAAGTTGAGGCTGCTGGCATACCGTGCCGGGCACC?GCACGTGGTGGGCGACATCTAGTTGTTCTCGGTGCAGCGCCCCGGCACTTAGCTAGCACGTTGGCCCTAAGGACCCAT???CGACCGTAGCGC??TTCGCCGCTCGGACC? Digitaria_laxa TGAACCTGCGGAAGGATCATTGTCGTGACCC?TAAACAAAACAGACCGTGAACGTGTCATCAAAGTCGTCGGGCTT?CGGCTCGGCTAAGGCCCCCACCTTCGTCC????TGGAGGGGA?GGGCCGCAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACT??TATTGCCTTGCTCGGGG?ATGCGGTCGGCGTGCCGGCCGCA?CCCCGTGCAGCGATGCTATGTTAATCCACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCACCCAAGGGGAGGGACGTGATGTTT?GGCCCTCCGTGCCGCAAGGCGCGGTGGGCCGAAGTTGAGGCTGCCGGCATACCGTGCCGGGCACC?GCACATGGTGGGCGACATCAAGTTGTTCTCGGTGCAGCGCCTCGGCACATAGCTAGCATGTTGGCCCTAAGGACCCAT???CCACCGTAGCGC??TTCGTCGCTCGGACC? Digitaria_milanjiana TGAACCTGCGGAAGGATCATTGTCGTGACCC?TAAACAAAACAGACCGTGAACGTGTCATCAAAGTCGTCGGGCTT?CGGCTCGGCTAAGGCCCTCGACTTCGTAC????AGGAGGAGA?GGGCCGCAAAAGAACCCAGGGCGCCGAAGGCGTCAAGGAACACT??TGTTGCCTTGCTCGGGG?ATGTGGTCGGCTTGCCAGCCGCGCCCCCGTGCAGCGATGCTATGTAAACCAACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCATCCAAGGGGAGGGACGTGGTGTTTGGGCCTCCCATGCCGCAAGGCGCGGTTGGCCGAAGTTGAGGCTGCCGGCATACCGTGCCGGGCACC?GCACGTGGTGGGCGACTTCAAGTTGTTCTCGGTGCAGCGTCCCGGCACGTAGCTAGCGCATTGGCCCTAATGACCCAT???CGACCGTAGCGC??TT?GCCGCTCGGACC? Digitaria_neesiana TGAACCTGCGGAAGGATCATTGTCGTGACCC?TAAACAAAACAAACCGCGAACGWGTCATCAGTCTCGTCGGGCTTT?GGCTCGGCTAAGGCCCCCGCCTTCGTCCCGGACGGAGGAGA?GGGCCGCAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACT??TATTGCCTTGCTCGGGG?ACGTGGTCGGCCTGCTGGCCACG?CCTCGCGCAGCGATGCTATGTTAAACAACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTCGAGGGCACGTCTGCCTGGGCGTCACGCCAAAAGACACTCCCA??CCCATCCAAGGGGAGGGACGTGGTGTTT?GGCTCCTCGTGCCGCAAGGCGCGGTGGGCCGAAGTTGAGGCTGCCGGCATACCGTGCCGGGCACA?GCACATGGTGGGCGACTTACAGTTGTTCTCAGTGCAGCGCCCCGGCACGTAGCTAGCAAGATGGCCACAAGGACCCWT???CGACCGTAGCGC??TTCGCCGCTCGGACC? Digitaria_phaeothrix TG?ACCTGCGG?AGGATCATTGTCGTGACCC?TAAACAAAACAAACCGCGAACGTGTCATCAGTCTCGTCGGGCTTT?GGCTCGGCTAAGGCCCCCGCCTTCGTCTCGGACGGAGGAGA?GGGCCGCAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACT??TATTGCCTTGCTCGGGG?ACGTGGTTGGCCTGCTGGCCACG?CCTCGCGCAGCGATGCTATGTTAAACAACATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCATCCAAGGGGAGGGACGTGGTGTTT?GGCTCCTCGTGCCGCAAGGCGCGGTGGGCCGAAGTTGAGGCTGCCGGCATACCGTGTCGGGCACA?GCACGTGGTGGGCGACTTACAGTTGTTCTCAGTGCAGCGCCCCGGCACGTAGCTAGCAAGATGGCCACAAGGACCCAT???CGACCGTAGCGC??TTCGCCGCTCGGACC? Digitaria_pittieri TGAACCTGCGGAAGGATCATTGTCGTGACCC?TAAACAAAACAGACCGTGAACGTGTCATCAAACTCGTCGGGCTT?CGGCTCGGCTAAGGCCCCCGCCTTCGTCT????CGGAGGAGA?GGGCCGCAAAAGAACCCACGGCGCCAAAGGCGTCAAGGAACACT??TATTGCATTGCTCGGGG?ATGTGGTCGGCCTGCCGGCCGCAGCCTCGTGTAGCGATTCTATGTTAATCCACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTATCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCATCCAAGGGGAGGGACGTGGTGTTT?GGCCCCTCGTGCCGCAAGGTGCGGTGGGCCGAA?TTGAGGCTGCCGGCATACCGTGCCGGG???????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Digitaria_sacchariflora TGAACCTGCGGAAGGATCATTGTCGTGACCC?TAAACAAAACAGACCGTGAACGTGTCATCAAACTCGTCGGGCTT?CGGCTCGGCTAAGGCCCTCGCCTTCGTTT????CGGAGGAGA?GGGCCACCAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACT??TATTGCATTGCTCGGGG?ATGTGGTCGGCCTGCCGGCTGCAGCCTCGTGTAGCGATTCTATGTTAATCCACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTTTGGTTGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCATCCAAGGGGAGGGACGTGGTGTTT?GGCCCCTCGTGCCGCAAGGCGCGGTGGGCCGAAGTTGAGGCTGCTGGCATACCGTGCCGGGCACC?GCACGTTGTGGGCGACATCTAGTTGTTCTCGGTGCAGCGCCCCGGCACTTAGCTAGCACGTTGGCCCTAAGGACCCAT???CGACCGTAGCGC??TTCGCCGCTCGGACC? Digitaria_sanguinalis T??ACCTGCGG?AGGATCATTGTCGTGACCC?TAAACAAAACAGACTGTGAACGTGTCATCAAAGTCGTCGGGCTT?CGGCTCGGCTAAGGCCCTCGACTTCGTCC????CGGAGGAGA?GGGCCGCAAAAGAACCCAGGGCGCCGAAGGCGTCAAGGAACACT??TATTGCCTTGCTCGGGG?ATGTGGCCGGCTTGCCGGCCGCGCCCCCGTGCAGCGATGCTATGTAAACCAACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTCGAGGGCACGCCTGCCTGGGCGTCACGTCAAAAGACACTCCCAA?CCCATCCAAGGGGAGGGACGTGGTGTTT?GGCCTCCCGTGCCGCAAGGCGCGGTTGGTCGAAGTTGAGGCTGCCGGCATACCGTGTCGGGCACC?GCACGTGGTGGGCGACTTCAAGTTGTTCTCGGTGCAGCGCCCCGGCACGTAGCTAGCGTGTT?GCCCTAAGGACCCAT???CGACCGTAGCGC??TT?GCCGCTCGGACC? Digitaria_similis TGAACCTGCGGAAGGATCATTGTCGTGACCC?TAAACAAAACAGACCGTGAACGTGTCATCAAACTCGTCGGGCTT?CGGCTCGGCTAAGGCCCTCGCCTTCGTTC????CGGAGGAGA?GGGCCACCAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACT??TATTGCATTGCTCGGGG?ATGTGGTTGGCCTGCTGGCCGCAGCCTCGTGTAGCGATTCTATGTTAATCCACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTTTGGTCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCATCCAAGGGGAGGGACGTGGTGTTT?GGCCCCCCGTGCCGCAAGGCGCGGTGGGCCGAAGTTGAGGCTGCCGGCATACCGTGCCGGGCACC?GCACGTGGTGGGCGACATCTAGTTGTTCTCGGTGCAGCGCCCCGGCACTTAGCTAGCACGTTGGCCCTAAGGACCCAT???CGACCGTAGCGC??TTTGCCGCTCGGACC? Digitaria_swalleniana TGAACCTGCGGAAGGATCATTGTCGTGACCC?TAAACAAAACAGACCGTGAACGTGTCATCAAACTCGTCGGGCTT?CAGCTCGGCTAAGGCCCCCGCCTTCGTCT????CGGAGGAGA?GGGCCGCAAADGAACCCACGGCGCCGAAGGCGTCAAGGAACACT??TATTGCATTGCTCGGGG?ATGTGGTCGGCCTGCCGGCCGCAGCCTCGTGTAGCGATTCTATGTTAATCCACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTTGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCATCCAAGGGGAGGGACGTGGTGTTT?GGCCCCCCGTGCCGCAAGGTGCGGTGGGCCGAAGTTGAGGCTGCCGGCATATCGTGTCGGGCACC?GCACGTGGTGGGCGACATCAAGTTGTTCTCGGTGCAGCGCCCCGGCACGTAGCTAGCATGTTGGCCCTAAGGACCCAT???CGACCGTAGCGC??TTTGCCGCTCGGACC? Digitaria_velutina TGAACCTGCGGAAGGATCATTGTCGTGACCC?TAAACAAAACAGACTGTGAACGTGTCATCAAAGTCGTCGGGCTT?CGGCTCGGCTAAGGCCCTCGACTTCGTCA????CAAAGGAGA?GGGCCACAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACT??TATTGCCTTGCTCGGGG?ACGTGGCCGGCCTGCTGGCCGCG?CCCCGTGCAGCGATGCTATGTTAACCAACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCTAA?CCCATACAAGGGGAGGGACGTGGTGTTT?GGCCTCCCGTGCCGCAAGGCGCGGTGGGCCGAAGTTGAGGCTGCCGGCAAACCGTGCCGGGCACC?GCACGTGGTGGGCGACTTCAAGTTGTTCTCGGTGCAGCGCCCCGGCTCGTAGCTAGCACATTGGCCCTTAGGACCCAA???CGACCGTAGCGC??TT?GCCGCTCGGACC? Digitaria_patens TGAACCTGCGGAAGGATCATTGTCGTGACCC?TAAACAAAACAGACCGTGAACGTGTCATCAAACTTGTCGGGCTT?CGGCTCGGCTAAGGCCCCCACCTTCGTCC????CGGAGGAGA?GGGCCGCAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACT??TATTGCCTTGCTCGGGG?ATGTGGTCGGCCTGCCGGCCACAGCCTCGTGCAGCGATTCTATGTTAATCCACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCATCCAAGGGGAGGGACGTGGTGTTTGGCCCTCCCGTGCCGCAAGGTGCGGTGGGCCGAAGTTGAGGCTGCCGGCATACCGTGTCGGGCACC?GCACGTTGTGGGCGACATCAAGTTGTTCTCGGTGCAGCGCCCCGGCACGTAGCTACCATGTTGGCCCTAAGGACCCA?????????????????????????????????? Digitaria_tenuis ????????????????TCATTGTCGTGACCC?TAAACAAAACAGACCGTGAACGTGTCATCAAACTCGTCGGGCTT?CGGCTCGGCTAAGGCCCTCGCCTTCGTCC????CGGAGGAGA?GAGCCGCAAAAGAACCCACGGCGCCAAAGGCGTCAAGGAACACT??TATTGCATTGCACGGGGTGTGTGGTCGGCCTGCCGGCTGCAGCCTCGTGTAGCGATTCTATGTTAATCCACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTTTGGTTGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCATCCAAGGGGAGGGACGTGGTGTTT?GGCCCCTCGTGCCGCAAGGCGCGGTGGGCCGAAGTTGAGGCTGCCGGCATACCGTGCCGGGCACC?GCACGTGGTGGGCGACATCAAGTTGTTCTCGGTGCAGCGCCCCGGCACGTAGCTAGCATGTTGGCCCTAAGGACCCAT???CGACCGTAGCGC??TTCGCCGCTCGGACC? ; END; BEGIN CODONS; CODESET * UNTITLED ( CHARACTERS = DNA_Characters ) = universal : 1 - 621; END; BEGIN TREES; TITLE Example_Tree; LINK TAXA = Taxa; TRANSLATE 1 Anthaenantia_lanata, 2 Panicum_repens, 3 Megaloprotachne_albescens, 4 Digitaria_brownii 5 Digitaria_californica_VarCal, 6 Digitaria_californica_VarVil, 7 Digitaria_catamarcensis, 8 Digitaria_ciliaris, 9 Digitaria_eggersii, 10 Digitaria_eriantha, 11 Digitaria_eriostachya, 12 Digitaria_gerdesii, 13 Digitaria_hitchcockii, 14 Digitaria_insularis, 15 Digitaria_laxa, 16 Digitaria_milanjiana, 17 Digitaria_neesiana, 18 Digitaria_phaeothrix, 19 Digitaria_pittieri, 20 Digitaria_sacchariflora, 21 Digitaria_sanguinalis, 22 Digitaria_similis, 23 Digitaria_swalleniana, 24 Digitaria_velutina, 25 Digitaria_patens, 26 Digitaria_tenuis; TREE TNT_1 = [&U] (1,((2,(((12,18),17),((24,(16,(10,(8,(11,21))))),((3,(((4,((13,15),((19,(23,(26,9))),(((25,(5,6)),(7,(22,(20,14))))))))))))))))); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = Continuous_Characters) = Squared: 1 - 7; TYPESET * UNTITLED (CHARACTERS = Morphological_Characters) = unord: 1 - 115; TYPESET * UNTITLED (CHARACTERS = DNA_Characters) = unord: 1 - 621; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = Continuous_Characters) = Brownian_default: 1 - 7; ProbModelSet * UNTITLED (CHARACTERS = Morphological_Characters) = 'Mk1 (est.)': 1 - 115; ProbModelSet * UNTITLED (CHARACTERS = DNA_Characters) = 'Jukes-Cantor': 1 - 621; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4842326765950523719; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8231319939411448782; checksum 0 4042865705; setID 1 5626809262432048033; checksum 1 4072089261; setID 2 272748931908088764; checksum 2 1678516920; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8231319939411448782 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 160; endTell; setSize 807 496; setLocation 49 44; setFont SanSerif; setFontSize 10; onInfoBar; setExplanationSize 30; setAnnotationSize 20; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; setBackground White; toggleShowNames on; toggleTight off; toggleShowChanges on; toggleSeparateLines off; toggleShowStates on; toggleAutoWithCharNames on; toggleConstrainCW on; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.CellPictures.CellPictures; tell It; toggleSeparate off; toggleAA off; endTell; endTell; showDataWindow #5626809262432048033 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 168; endTell; setSize 807 496; setLocation 49 44; setFont SanSerif; setFontSize 10; onInfoBar; setExplanationSize 30; setAnnotationSize 20; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; setBackground White; toggleShowNames on; toggleTight off; toggleShowChanges on; toggleSeparateLines off; toggleShowStates on; toggleAutoWithCharNames on; toggleConstrainCW on; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.ornamental.CellPictures.CellPictures; tell It; toggleSeparate off; toggleAA off; endTell; endTell; showDataWindow #272748931908088764 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 159; endTell; setSize 807 496; setLocation 49 44; setFont SanSerif; setFontSize 10; onInfoBar; setExplanationSize 30; setAnnotationSize 20; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; setBackground White; toggleShowNames on; toggleTight off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWithCharNames on; toggleConstrainCW on; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.ornamental.CellPictures.CellPictures; tell It; toggleSeparate off; toggleAA off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #4842326765950523719 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 2125.1428980174756.6827393154098520250; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.DiagonalDrawTree.DiagonalDrawTree; tell It; setEdgeWidth 12; orientUp; getEmployee #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; stretchToggle off; branchLengthsToggle off; toggleScale on; toggleCenter off; toggleEven off; namesAngle ?; endTell; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; labelBranchLengths off; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleNodeLabels on; toggleShowNames on; endTell; endTell; getTreeWindow; tell It; setSize 807 496; setLocation 293 105; setFont SanSerif; setFontSize 10; onInfoBar; setExplanationSize 30; setAnnotationSize 20; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.arrow; endTell; setActive; setTreeNumber 1; useSuggestedSize; toggleTextOnTree off; endTell; showWindow; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; endTell; endTell; endTell; end;