#NEXUS [written Wed Aug 12 12:33:28 CDT 2015 by Mesquite version 3.02 (build 681) at SEC-1337-PLETCH/130.160.36.70] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=18; TAXLABELS Blastocladiella_sp._JEL440 Blastocladiella_brittanica_BR214 Catenaria_sp._JEL339 Coelomomyces_quadangulatus_SN Allomyces_arbusculus_HisB3Sc Allomyces_moniliformis_India3 Blastocladia_ramosa_WM101 Blastocladia_pringsheimii_WM102 Microallomyces_sp._CR74 Catenaria_uncinata_WM103B Paraphysoderma_sedebokerense_TJ2007a Paraphysoderma_sedebokerense_FD61 Physoderma_maculare_BL135 Physoderma_dulichii_BL060 Physoderma_maydis_BL004 Urophlyctis_pulposa_SN Nuclearia_simplex_CCAP1552 Coelomycidium_sp._TP2011 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=1749; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = -; MATRIX Blastocladiella_sp._JEL440 ACTACTTGGA-TAACCGTGGTAATTCTAGAGCTAATACATGCCTTGAAAGTCCTGACCTTTAACCGGAAGGGATGCAGTTATTAGATA-CAAAACCAATT Blastocladiella_brittanica_BR214 ACTACTTGGA-TAACCGTGGTAATTCTAGAGCTAATACATGCCTTGAAAGTCCTGACCTTTA-CCGGAAGGGATGCAGTTATTAGATA-CAAAACCAATT Catenaria_sp._JEL339 ACTACTCGGA-TAACCGTGGTAATTCTAGAGCTAATACGTGCCTTGAAAGTCCTGACCTTTA-CTGGGAGGGATGCAGTTATTAGATA-CAGAACCAATT Coelomomyces_quadangulatus_SN ---------------------------------------------------------------------------------------------------- Allomyces_arbusculus_HisB3Sc ACTACTTGGA-TAACCGTGGTAATCCTAGAGCTAATACATGCATAA-AAATCCTGACCTTTA--CGGAAGGGATGCAGTTATTAGATA-CAAAACCAACC Allomyces_moniliformis_India3 ACTACTTGGA-TAACCGTGGTAATTCTAGAGCTAATACATGCATTACAAGCCCTGACCTTTA--CGGAAGGGGTGCAGTTATTAGATA-CAAAACCAACC Blastocladia_ramosa_WM101 ACTACTTGGA-TAACCGTGGTAATTCTAGAGCTAATACATGCTTCA-AAATCCTGACCTTTA--TGGAAGGGATGCAGTTATTAGATA-CAAAACCAACC Blastocladia_pringsheimii_WM102 ACTACTTGGA-TAACCGTGGTAATTCTAGAGCTAATACATGCTTCA-AG-TCCTGACCTTTT--TGGAAAGGATGCAGTTATTAGATA-CAAAACCAACC Microallomyces_sp._CR74 ACCACTTGGA-TAACCGTGGTAATTCTAGAGCTAATACATGCCTCGAAAGTCCTGACCTTTA--TGGAAGGGATGCAGTTATTAGATA-CAAAACCAACC Catenaria_uncinata_WM103B ACTACTTGGA-TAACCGTGGTAATTCTAGAGCTAATACATGCACTC-AAGTCCTGACCTTTA--TGGAAGGGATGCAGTTATTAGATA-CAAAACCAACC Paraphysoderma_sedebokerense_TJ2007a ACTACTTGGA-TAACCGTGGTAATTCTAGAGCTAATACATGCTAAA--AATCCCGACTTCTG----GAAGGGATGTATTTATTAGATA-AAAAACCAACC Paraphysoderma_sedebokerense_FD61 ACTACTTGGA-TAACCGTGGTAATTCTAGAGCTAATACATGCTAAA--AATCCCGACTTCTG----GAAGGGATGTATTTATTAGATA-AAAAACCAACC Physoderma_maculare_BL135 ACTACTTGGAATATCCGTGGTAATTCTAGAGCTAATACATGCTTCA--AATCCCGACTTCTG----GAAGGGATGTATTTATTAGATA-AAAAACCAACC Physoderma_dulichii_BL060 ---------------------------------------------------------------------------------------------------- Physoderma_maydis_BL004 ACTACTTGGA-TAACCGTGGTAATTCTAGAGCTAATACATGCTTCA--AATCCCGACTTCTG----GAAGGGATGTATTTATTAGATA-AAAAACCAACC Urophlyctis_pulposa_SN ACTACTTGGA-TAACCGTGGTAATTCTAGAGCTAATACATGCTTCA--AATCCCGACTTCTG----GAAGGGATGTATTTATTAGATA-AAAAACCAACC Nuclearia_simplex_CCAP1552 ACTACTTGGA-TAACCGTGGTAATTCTAGAGCTAATACATGCGAAA--AATCCCGACTTCTG----GAAGGGATGTATTTATTAGATACAAAAACCAATC Coelomycidium_sp._TP2011 ATTACATGGA-TAACTGTGGTAATTCTAGAGCTAATACATGCTTAA----TATTAACTTTGC----GAAAGCAAGTTAATGCATTTTATTAGTTACAACT Blastocladiella_sp._JEL440 TGGAGCAATCCAATTCCTTGGTGATTCATAATAATCTTGCAAATCGCATTTGGCTATTTAACGCCGGCGATGGGTCATTCAATTTTCTGCCCTATCAACT Blastocladiella_brittanica_BR214 TAGAGCAATCTAATTCTTTGGTGATTCATAATAATCTTGCAAATCGCATTTGGC--TTTAATGCCGGCGATGGGTCATTCAATTTTCTGCCCTATCAACT Catenaria_sp._JEL339 -GGGGCAACCCA-TTTTTTGGTGATTCATGATAACCTTGCAGATCGCAT--GGC--CTTAGTGCTGGCGATGGGTCGTTCGAATTTCTGCCCTATCAACT Coelomomyces_quadangulatus_SN --------------------------CATGATAACCTTGCAGATCGCAT--GGC--TTT-GTGCTGGCGATGGGTCGTTCGAATTTCTGCCCTATCAACT Allomyces_arbusculus_HisB3Sc CGG-GCAA-CCGGTTTTTTGGTGATTCATGATAACTTTGCTGACCGCAT--GGC--CTT-GCGCCGGCGGCGGGTCATTCAAATTTCTGCCCTATCAACT Allomyces_moniliformis_India3 CGG-GCAA-CCGGTTTCTTGGTGATTCATGATAACTTTGCGGACCGCAT--GGC--CTTTGCGCCGGCGGCGGGTCATTCAAATTTCTGCCCTATCAACT Blastocladia_ramosa_WM101 TGG-GCAA-CCAGTTCCTTGGTGATTCATGATAACTTTGCAAATCGCAT--GGT--CTT-GTACCGGCGATGGGTCATTCAAATTTCTGCCCTATCAACT Blastocladia_pringsheimii_WM102 TGG-GCAA-CCAGTCCCTTGGTGATTCATGATAACTTTGCAAATCGCAC--AGC--CTTTGCGCTGGCGATGGGTCATTCAAATTTCTGCCCTATCAACT Microallomyces_sp._CR74 TGG-GCAA-CCAGTTCTTTGGTGATTCATGATAACCTTGCAAATCGCAT--GTC--CTT-GCGACGGCGATAGGTCATTCAAATTTCTGCCCTATCAACT Catenaria_uncinata_WM103B CGG-GCAA-CCGGTCCCTTGGTGATTCATGATAACTTTGCGAATCGCAC--GGC--CTTTGTGCTGGCGATAGGTCATTCAAATTTCTGCCCTATCAACT Paraphysoderma_sedebokerense_TJ2007a CGGG-CAACCG-GTTCTTTGGTGATTCATAATAACTTTTCGAATCGCAT--GGC---TTTACGCCGGCGATGGTTCATTCAAATTTCTGCCCTATCAACT Paraphysoderma_sedebokerense_FD61 CGGG-CAACCG-GTTCTTTGGTGATTCATAATAACTTTTCGAATCGCAT--GGC---TTTACGCCGGCGATGGTTCATTCAAATTTCTGCCCTATCAACT Physoderma_maculare_BL135 CGGG-CAACCG-GTTCTCTGGTGACTCATAATAACTTTTCGAATCGCAT--GGCCTTTTTGCGCCGGCGATGGTTCATTCAAATTTCTGCCCTATCAACT Physoderma_dulichii_BL060 ---------------------------------------------------------------------------------------------------- Physoderma_maydis_BL004 CGGG-TAACCG-GTTCATTGGTGATTCATAATAACTTTTCGAATCGCAT--GGC---TTTATGCTGGCGATGGTTCATTCAAATTTCTGCCCTATCAACT Urophlyctis_pulposa_SN TGGG-TAACCG-GTTCTTTGGTGATTCATAATAACTTTTCGAATCGCAT--GGC--TTTTACGCCGGCGATGGTTCATTCAAATTTCTGCCCTATCAACT Nuclearia_simplex_CCAP1552 GGGGGCAACCTCGTTTTTTGGTGATTCATAATAACTTCTCGAATCGTAT--GGC---TTTATGCCGGCGATGAATCATTCAAATTTCTGCCCTATCAACT Coelomycidium_sp._TP2011 CAATGACTTAAAGTCTAAAAGTGACTTATAATAAAATTGCGGATC-----------------TTTAAAGATTTGTCAATAAAATTTCTGCCCTATCAACT Blastocladiella_sp._JEL440 TTTGACGGTAGGATAGAGGCCTACCGTGGTGATAACGGGTAACGGGGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAG Blastocladiella_brittanica_BR214 TTTGACGGTAGGATAGAGGCCTACCGTGGTGATAACGGGTAACGGGGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAG Catenaria_sp._JEL339 TTTGACGGTAGGATAGAGGCCTACCGTGGTGATAACGGGTAACGGGGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAG Coelomomyces_quadangulatus_SN TTTGACGGTAGGATAGAGGCCTACCGTG-TGATAACGGGTAACGGGGAATTAGGGTTCGATTCCGGAGAGGGAGC-TGAGAAACGGCTACCACATCCAAG Allomyces_arbusculus_HisB3Sc GTCGATGGTAGGATAGAGGCCTACCATGGTGATAACGGGTAACGGGGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAG Allomyces_moniliformis_India3 GTCGATGGTAGGATAGAGGCCTACCATGGTGATAACGGGTAACGGGGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAG Blastocladia_ramosa_WM101 GTCGATGGTAGGATAGAGGCCTACCATGGTGATAACGGGTAACGGGGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAG Blastocladia_pringsheimii_WM102 GTCGATGGTAGGATAGAGGCCTACCATGGTGATAACGGGTAACGGGGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAG Microallomyces_sp._CR74 TTCGACGGTAGGATAGAGGCCTACCGTGGTGATAACGGGTAACGGGGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAG Catenaria_uncinata_WM103B TTCGACGGTAGGATAGAGGCCTACCGTGGTGATAACGGGTAACGGGGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAG Paraphysoderma_sedebokerense_TJ2007a TTCGATGGTAGGATAGAGGCCTACCATGGTGGTAACGGGTAACGGGGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAG Paraphysoderma_sedebokerense_FD61 TTCGATGGTAGGATAGAGGCCTACCATGGTGGTAACGGGTAACGGGGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAG Physoderma_maculare_BL135 TTCGATGGTAGGATAGAGGCCTACCATGGTGGTAACGGGTAACGGGGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAG Physoderma_dulichii_BL060 -------------------CCTACCATGGTGGTAACGGGTAACGGGGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAG Physoderma_maydis_BL004 TTCGATGGTAGGATAGAGGCCTACCATGGTGGTAACGGGTAACGGGGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAG Urophlyctis_pulposa_SN TTCGATGGTAGGATAGAGGCCTACCATGGTGGTAACGGGTAACGGGGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAG Nuclearia_simplex_CCAP1552 TTCGATGGTAGGATAGAGGCCTACCATGGTTGTAACGGGTAACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCATGAGAAACGGCTACCACATCTAAG Coelomycidium_sp._TP2011 TTAGATGGTAGAGTAGTGGTCTACCATTGTGATAACGGGTAACGGGGAATTAGGGTTCGATTCCGGAGAGTTAGCATGAGAAATGGCTACCACATCCACG Blastocladiella_sp._JEL440 GAAGGCAGCAGGCGCGCAAATTACCCAATCCTGATACAGGGAGGTAGTGACAATAAATAACGATGCGGAACCTTTATGGTTTTCGCAATTGGAATGAGTA Blastocladiella_brittanica_BR214 GAAGGCAGCAGGCGCGCAAATTACCCAATCCTGATACAGGGAGGTAGTGACAATAAATAACGATGCGGAACCTTTATGGTTTTCGCAATTGGAATGAGTA Catenaria_sp._JEL339 GAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACAGGGAGGTAGTGACAATAAATAACGATGCGGGACTTTT-TAGTCTTCGCAATTGGAATGAGTA Coelomomyces_quadangulatus_SN GAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACAGGGAGGTAGTGACAATAAATAACGATGCGGGACTTTT-TAGTCTTCGCAATTGGAATGAGTA Allomyces_arbusculus_HisB3Sc GAAGGCAGCAGGCGCGCAAATTACCCAATCCTGATACAGGGAGGTAGTGACAATAAATAACGATGCAGGACCTTATGG-TCTTTGCAATTGGAATGAGTA Allomyces_moniliformis_India3 GAAGGCAGCAGGCGCGCAAATTACCCAATCCTGATACAGGGAGGTAGTGACAATAAATAACGATGCAGGACCATTTGG-TCTTTGCAATTGGAATGAGTA Blastocladia_ramosa_WM101 GAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACAGGGAGGTAGTGACAATAAATAACGATGCAGGGCCTTATGG-TCTTTGCAATTGGAATGAGTA Blastocladia_pringsheimii_WM102 GAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACAGGGAGGTAGTGACAATAAATAACGATGCAGGGCCCTACGGGTCATTGCAATTGGAATGAGTA Microallomyces_sp._CR74 GAAGGCAGCAGGCGCGCAAATTACCCAATCCTGATACAGGGAGGTAGTGACAATAAATAACGAAGACAGACCA-ATGG-TCTTGTCTATTGGAATGAGTA Catenaria_uncinata_WM103B GAAGGCAGCAGGCGCGCAAATTACCCAATCCTGATACAGGGAGGTAGTGACAATAAATAACGATGCGAGACCTTTTGG-TTTTTGCAATTGGAATGAGTA Paraphysoderma_sedebokerense_TJ2007a GAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACAGGGAGGTAGTGACAATAAATAACAATGCAGAGCTCTTCGAGTTTT-GCAATTGGAATGAGTA Paraphysoderma_sedebokerense_FD61 GAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACAGGGAGGTAGTGACAATAAATAACAATGCAGAGCTCTTCGAGTTTT-GCAATTGGAATGAGTA Physoderma_maculare_BL135 GAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACAGGGAGGTAGTGACAATAAATAACAATGCAGAGCTCTTTGAGTTTT-GCAATTGGAATGAGTA Physoderma_dulichii_BL060 GAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACAGGGAGGTAGTGACAATAAATAACAATGCAGAGCTCTTTGAGTTTT-GCAATTGGAATGAGTA Physoderma_maydis_BL004 GAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACAGGGAGGTAGTGACAATAAATAACAATGCAGAGCTCTTTGAGTTTT-GCAATTGGAATGAGTA Urophlyctis_pulposa_SN GAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACAGGGAGGTAGTGACAATAAATAACAATGCAGAGCTCTATGAGTTTT-GCAATTGGAATGAGTA Nuclearia_simplex_CCAP1552 GAAGGCAGCAGGCGCGCAAATTACCCAATCCCGACACGGGGAGGTAGTGACAAGAAATAACAATGCAGGGC-CTTCGGGTCTT-GTAATTGGAATGAGTA Coelomycidium_sp._TP2011 GATGGCAGCAGGCGCGCAAATTACCCAATCCTAATAAAGGGAGGTAGCGACACGAAATATCAATGCGAAGCCTATATGGTTTTTGCAATTGGAATGAAAT Blastocladiella_sp._JEL440 CAATTTAAACCCCTTAACGAGGAACAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAAGAGCGTATATTAATACTGCTGCAGTT Blastocladiella_brittanica_BR214 CAATTTAAACCCCTTAACGAGGAACAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAAGAGCGTATATTAATACTGCTGCAGTT Catenaria_sp._JEL339 CAATTTAAATCCCTTAACGAGGAACAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTT Coelomomyces_quadangulatus_SN CAATTTAAATCCCTTAACGAGGAACAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTT Allomyces_arbusculus_HisB3Sc CAATTTAAATCCCTTAACGAGGAACAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTT Allomyces_moniliformis_India3 CAATTTAAATCCCTTAACGAGGAACAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTT Blastocladia_ramosa_WM101 CAATTTAAATCCCTTAACGAGGAACAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTT Blastocladia_pringsheimii_WM102 CAATTTAAATCCCTTAACGAGGAACAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTT Microallomyces_sp._CR74 CAATTTAAATCCCTTAACGAGGAACAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTT Catenaria_uncinata_WM103B CAATTTAAATCCCTTAACGAGGAACAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTT Paraphysoderma_sedebokerense_TJ2007a CAATTTAAATCCCTTAACGAGGAACAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTT Paraphysoderma_sedebokerense_FD61 CAATTTAAATCCCTTAACGAGGAACAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTT Physoderma_maculare_BL135 CAATTTAAATCCCTTAACGAGGAACAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTT Physoderma_dulichii_BL060 CAATTTAAATCCCTTAACGAGGAACAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTT Physoderma_maydis_BL004 CAATTTAAATCCCTTAACGAGGAACAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTT Urophlyctis_pulposa_SN CAATTTAAATCCCTTAACGAGGAACAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTT Nuclearia_simplex_CCAP1552 CAATTTAAACCCCTTAACGAGGAACAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAATGTTGTTGCAGTT Coelomycidium_sp._TP2011 GAAAGTAGATTTCTCTTTGAGAAACAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAATTTGTTGCGGTT Blastocladiella_sp._JEL440 AAAAAGCTCGTAGTTGAATTTCAAGGACCTTTTTTGCGCGAGGCCGCTATCTC-TCTAAGA------------------------------GTAGCGCGT Blastocladiella_brittanica_BR214 AAAAAGCTCGTAGTTGAATTTCAAGGACCTTTTTTGCGCGAGGCCGCTATCTTATTTATAA------------------------------GTAGCGCGT Catenaria_sp._JEL339 AAAACGCCCGTAGTTGAATTTCAAGAGCCTTTTTGT----AGYCTGCTACTTGGCCTTT--------------------------------TCGGCGAGT Coelomomyces_quadangulatus_SN AAAACGCCCGTAGTTGAATTTCAAGAGCCTTTTTGT----AGTCTGCTACTTGGCCTTT--------------------------------TCGGCGAGT Allomyces_arbusculus_HisB3Sc AAAAAGCTCGTAGTTGAATTTCAAGGGTTT-TTTTCGT--AGCTAGCCATTGTTCCCTTT-------------------------------GCGGTCAAT Allomyces_moniliformis_India3 AAAAAGCTCGTAGTTGAATTTCAAGGGTTTCTTTTCGT--AGCTAGCCATTGTTCCCTTT-------------------------------GCGGTCAAT Blastocladia_ramosa_WM101 AAAAAGCTCGTAGTTGAATTTCAAGGGTTTT--TTTGC--TACTGGCCATTGCTCCCTT--------------------------------GAGGACAAT Blastocladia_pringsheimii_WM102 AAAAAGCTCGTAGTTGAATTTCAAGGGTTTTCTTTTGC--TACTGGCCATTGTACCCTC--------------------------------GCGGTCAAT Microallomyces_sp._CR74 AAAAAGCTCGTAGTTGAATTTCAAGGGTTT---TTTGC--AGCTGGCCATTGAGCCCTT--------------------------------GCGGCCAAT Catenaria_uncinata_WM103B AAAAAGCTCGTAGTTGAATTTCAAGGGTCT---CTTGT--GGCCGCCCACTGATCCTTTC-------------------------------ATGGGCAGT Paraphysoderma_sedebokerense_TJ2007a AAAAAGCTCGTAGTTGAATTTTGGGCTTGGTTGGGTGGTCTGCCGATT---------------------------------------------GGTATGT Paraphysoderma_sedebokerense_FD61 AAAAAGCTCGTAGTTGAATTTTGGGCTTGGTTGGGTGGTCTGCCGATT---------------------------------------------GGTATGT Physoderma_maculare_BL135 AAAAAGCTCGTAGTTGAATTTTGGATCTGCCAGGGTGGTCAGCCTATTTG-------------------------------------------GGTTTGT Physoderma_dulichii_BL060 AAAAAGCTCGTAGTTGAATTTTGGATCTGCTGCAGTGGTCAGCCTTAAC--------------------------------------------GGTTTGT Physoderma_maydis_BL004 AAAAAGCTCGTAGTTGAATTTTGGAATCGCTAAAGTGGTCAGCCTTAG---------------------------------------------GGTTTGT Urophlyctis_pulposa_SN AAAAAGCTCGTAGTTGAATTTTGGACCTGCTGAAGTGGTCAGCCAATTT--------------------------------------------GGTTTGT Nuclearia_simplex_CCAP1552 AAAAAGCTCGTAGTTGGATTTTTGGCTAACTTGGCCGGTCCGCTTGGTGAGATAACCTCTTGCTAAGTGTTGTTTACTGGTTTCCCAAGAGGTAGTGTGT Coelomycidium_sp._TP2011 AAAAAGCTCGTAGTTGAAACATAAAGCAAATGCAAT----AAAGTACTTTGGTACTTTT-----------------------------------ATTGGC Blastocladiella_sp._JEL440 TTTT--------TTCCGAGCGCGGGTCTTTTTTTAC--------------------------TTGTTGAGCGCCCTTGCTTGCATGCAAATGTGAGCAAG Blastocladiella_brittanica_BR214 TTTT--------TTCCGAGCGCGGGTCTTTTTTTAC--------------------------TTGTTGAGCGCCCTTGGTTGCATGCAAATGTGATCAAG Catenaria_sp._JEL339 ATGT--------CTG-GGCTACGGGTTCTTTATT----------------------------TTGTTTGGTGCCCAATGCTTCTTGTTC-TGCAAGCGGT Coelomomyces_quadangulatus_SN ATGT--------CTG-GGCTACGGGTTCTTTATT----------------------------TTGTTTGGTGCCCAATGCTTCTTGTTC-TGCAAGCGGT Allomyces_arbusculus_HisB3Sc GTGC--------ATTTGGTTACAGGCCCTTTTTTT---------------------------CTGCTAGGAGATGCGGCTCTTCT-GCTTGT-CAGCGGG Allomyces_moniliformis_India3 GTGC--------ATTTGGCTACAGGCCCTTTTTTT---------------------------CTGCTGGGGTGTGCGGCTCTTCT-GCTTGTTCAGCGGG Blastocladia_ramosa_WM101 GTGC--------TATCGGTAGCAGGCCCTTTTT-----------------------------CTGCTAGGAAATGCAGCTCTTCT-CTCTGA--GCG-GG Blastocladia_pringsheimii_WM102 GTGC--------ATTCGGTAGCGGGCCCTTTTTTTA--------------------------CTGTTGGGGCGCGGCGCTCTTCT-CTTTAT--GGGCGG Microallomyces_sp._CR74 GTGC--------AATGGTTTGCAGGCCCTTTATTT----------------------------TGCTAGGGAACAAGGCTCTTCTTCCTTGTGGAGCGGG Catenaria_uncinata_WM103B GTGT--------TTGTGGCCACGGACCCTTTTTTT---------------------------CTGCTGGGGGATCCAGCTCTTCC--CGTAA-GGGCGGG Paraphysoderma_sedebokerense_TJ2007a ACTA--------CTCGACTGGG------T-CTTA----------------------------------CCTTCTAGGGAACCTTCATGCTCTTCACTGAG Paraphysoderma_sedebokerense_FD61 ACTA--------CTCGACTGGG------T-CTTA----------------------------------CCTTCTAGGGAACCTTCATGCTCTTCACTGAG Physoderma_maculare_BL135 ACTG--------CTTTTTCTGGCGGATCT-TTTA----------------------------------CCTTCTAGGGAACCTTTATGTCCTTAATTGGG Physoderma_dulichii_BL060 ACTG--------CTTTGCTGGCGGATCTT--TTA----------------------------------CCTTCTAGGGAGCCTTCATGCTCTTAATTGAG Physoderma_maydis_BL004 ACTG--------CTTT--TGGTGATTCTTATTTA----------------------------------CCTTCTAGGGAGCCTTCATGCTCTTAATTGAG Urophlyctis_pulposa_SN ACTA--------CTTT--CTGGTGGGTCT-CTTA----------------------------------CCTTCTAGGGAACCTTCATGCTCTTAACTGGG Nuclearia_simplex_CCAP1552 GCTAGAGGGGTGCTCTTTTTGGGGTGCCTCTTTAGTGGCTGCTATCTCTAAGGTTAGCCTTTTACCCTTCTTCTAAAGACTTAGTATACTCTTAACCGGG Coelomycidium_sp._TP2011 ATAT--------TGCAAAGAAAAAGCTATATTTTTGA-------------------------TGTCAAAGTCAAAGTATTTCTTTTTGCTTTACCTTGAA Blastocladiella_sp._JEL440 --TGTTTTTGTGCTCAACACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTTT-TTTAAGCCTGAATATCTTAGCATGGAATAATAAAATAGGA Blastocladiella_brittanica_BR214 --TGTTTT-GTGCTCAACACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTTT-TTTAAGCCTGAATATCTTAGCATGGAATAATAAAATAGGA Catenaria_sp._JEL339 GTTGGTTTTGTGCCAAGCACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGT-TTACAGCTTGAATATCTTAGCATGGAATAATAGAATAGGA Coelomomyces_quadangulatus_SN GTTGGTTTTGTGCCAAGCACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGT-TTACAGCTTGAATATCTTAGCATGGAATAATAGAATAGGA Allomyces_arbusculus_HisB3Sc GCTGCAGTTTTCCT-AGCACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTTTTTCTTTGCCTGAATATCTTAGCATGGAATAATAGAATAGGA Allomyces_moniliformis_India3 GCTGCAACTATCCC-AGCACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGTTTTTTTGCCTGAATATCTTAGCATGGAATAATAGAATAGGA Blastocladia_ramosa_WM101 GTTGCAGTCTTCCT-AGCACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCT---TTTTTGCCTGAATATCTTAGCATGGAATAATAGAATAGGA Blastocladia_pringsheimii_WM102 GGCGTCGATTTCCC-AACACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCA--TTTTTGCCTGAATATCTTAGCATGGAATAATAGAATAGGA Microallomyces_sp._CR74 GTCTTGATTTTCCTTAGCACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC------TTAGCCTGAATATCTTAGCATGGAATAATAGAATAGGA Catenaria_uncinata_WM103B GCTGGCACGCTCCC-AGCACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGT-TTACAGCTTGAATATCTTAGCATGGAATAATAGAATAGGA Paraphysoderma_sedebokerense_TJ2007a TGTGATGGGGATCT-AGAACTTTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCTT-----ACGCTTGAATACATTAGCATGGAATAATAAAATAGGA Paraphysoderma_sedebokerense_FD61 TGTGATGGGGATCT-AGAACTTTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCTT-----ACGCTTGAATACATTAGCATGGAATAATAAAATAGGA Physoderma_maculare_BL135 TGTGAAGGGGATCT-AGAACTTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGGCATT---AACGCTTGAATACATTAGCATGGAATAATAAAATAGGA Physoderma_dulichii_BL060 TGTGATGGGGATCT-AGAACTTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGGCATTAT-A-CGCTTGAATACATTAGCATGGAATAATAAAATAGGA Physoderma_maydis_BL004 TGTGATGGGGATCT-AGAACTTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGGCATCTT-AACGCTTGAATACATTAGCATGGAATAATAAAATAGGA Urophlyctis_pulposa_SN TGTGATGGGGATCT-AGAACTTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGGCAATT----CGCTTGAATACATTAGCATGGAATAATAAAATAGGA Nuclearia_simplex_CCAP1552 CGTACTAAGGATTT-AGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCAATACTTTTGCTTGAATACATTAGCATGGAATAATAAAATAGGA Coelomycidium_sp._TP2011 AAAAATGGAGTTCTCAAAGCA--GACTTCACATAAAT--GTATTTTAAATACAAAATGT-AAAATGTTAAGACATTATAGCAAGGGATAATAAAAAAGGA Blastocladiella_sp._JEL440 CTTT-GGTTCTATTTTGTTGGTTTCTAGGACTAGAGTAATGATTAATAGGGATAGTTGGGGG-CATTAGTATTTAATTGTCAGAGGTGAAATTCTTGGAT Blastocladiella_brittanica_BR214 CTTT-GGTTCTATTTTGTTGGTTTCTAGGACTAGAGTAATGATTAATAGGGATAGTTGGGGG-CATTAGTATTTAATTGTCAGAGGTGAAATTCTTGGAT Catenaria_sp._JEL339 CTTT-AGTTCTATTTTGTTGGTTTCTAGGACTAGAGTAATGATTAATAGGGATAGTTGGGGG-CATTAGTATTTGATTGTCAGAGGTGAAATTCTTAGAT Coelomomyces_quadangulatus_SN CTTT-AGTTCTATTTTGTTGGTTTCTAGGACTAGAGTAATGATTAATAGGGATAGTTGGGGG-CATTAGTATTTGATTGTCAGAGGTGAAATTCTTAGAT Allomyces_arbusculus_HisB3Sc CTTT-GGTTCTATTTTGTTGGTTTCTAGGACTAGAGTAATGATTAATAGGGATAGTTGGGGGGCATTAGTATTTAATTGTCAGAGGTGAAATTCTTGGAT Allomyces_moniliformis_India3 CTTT-GGTTCTATTTTGTTGGTTTCTAGGACTAGAGTAATGATTAATAGGGATAGTTGGGGG-CATTAGTATTTAATTGTCAGAGGTGAAATTCTTGGAT Blastocladia_ramosa_WM101 CTCC-GGTTCTATTTTGTTGGTTTCTAGGACTAGAGTAATGATTAATAGGGATAGTTGGGGG-CATTAGTATTTAATTGTCAGAGGTGAAATTCTTGGAT Blastocladia_pringsheimii_WM102 CTCG-TGTTCTATTTTGTTGGTTTCTAGGACGTGAGTAATGATTAACAGGGATAGTTGGGGG-CATTAGTATTTAATTGTCAGAGGTGAAATTCTTGGAT Microallomyces_sp._CR74 CTTT-GGTTCTATTTTGTTGGTTTCTAGGACTAGAGTAATGATTAATAGGGATAGTTGGGGG-CATTAGTATTTAATTGTCAGAGGTGAAATTCTTGGAT Catenaria_uncinata_WM103B CTTT-GGTTCTATTTTGTTGGTTTCTAGGACTAGAGTAATGATTAATAGGGATAGTTGGGGG-CATTAGTATTTAATTGTCAGAGGTGAAATTCTTGGAT Paraphysoderma_sedebokerense_TJ2007a CTTT-GGTTCTATTTTGTTGGTTTCTAGGACCGAAGTAATGGTTAATAGGGATAGTTGGGGG-CATTAGTATTTAGTTGTCAGAGGTGAAATTCTTGGAT Paraphysoderma_sedebokerense_FD61 CTTT-GGTTCTATTTTGTTGGTTTCTAGGACCGAAGTAATGGTTAATAGGGATAGTTGGGGG-CATTAGTATTTAGTTGTCAGAGGTGAAATTCTTGGAT Physoderma_maculare_BL135 CTTT-GGTTTTATTTTGTTGGTTTCTAGGACCGAAGTAATGGTTAATAGGGATAGTTGGGGG-CATTAGTATTTAATTGTCAGAGGTGAAATTCTTGGAT Physoderma_dulichii_BL060 CTTT-GGTTTTATTTTGTTGGTTTCTAGGACCGAAGTAATGGTTAATAGGGATAGTTGGGGG-CATTAGTATTTAATTGTCAGAGGTGAAATTCTTGGAT Physoderma_maydis_BL004 CTTT-GGTTTTATTTTGTTGGTTTCTAGGACCGAAGTAATGGTTAATAGGGATAGTTGGGGG-CATTAGTATTTAATTGTCAGAGGTGAAATTCTTGGAT Urophlyctis_pulposa_SN CTTT-GGTTTTATTTTGTTGGTTTTCAAGACCGAAGTAATGGTTAATAGGGATAGTTGGGGG-CATTAGTATTTAATTGTCAGAGGTGAAATTCTTGGAT Nuclearia_simplex_CCAP1552 CTTTTGGTCTTATTTTGTTGGTTTCTAAGACCGAAGTAATGATTAATAGGGATAGTTGGGGT-GGTTAGTATTTAATTGTCAGAGGTGAAATTCTTGGAT Coelomycidium_sp._TP2011 CT---AGCGGCATAGAGATGATGTC---AGTTAGA--AATGATAAAAAGAGGCGGGTGGGGG-CATTAGTATTAATTGGTTAGAGGTGAAATTCTTAGAT Blastocladiella_sp._JEL440 TTAGGAAAGACTAACTT-CTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAAGGGATCGAAGATGATTAGATACCATCGTAGT Blastocladiella_brittanica_BR214 TTAGGAAAGACTAACTT-CTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAAGGGATCGAAGATGATTAGATACCATCGTAGT Catenaria_sp._JEL339 TTAGCAACGACTGACTT-CTGCGAAGGCATTTGCCAAGGATGTTTTCATTAATCAAGGACGAAAGTTAGGGGATCGAAGATGATTAGATACCATCGTAGT Coelomomyces_quadangulatus_SN TTAGCAAAGACTGACTT-CTGCGAAGGCATTTGCCAAGGATGTTTTCATTAATCAAGGACGAAAGTTAGGGGATCGAAGATGATTAGATACCATCGTAGT Allomyces_arbusculus_HisB3Sc TTAGGAAAGACTAACTTTCTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAAGGGATCGAAGATGATTAGATACCATCGTAGT Allomyces_moniliformis_India3 TTAGGAAAGACTAACTT-CTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAAGGGATCGAAGATGATTAGATACCATCGTAGT Blastocladia_ramosa_WM101 TTAGGAAAGACTAACTT-CTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAAGGGATCGAAGATGATTAGATACCATCGTAGT Blastocladia_pringsheimii_WM102 TTAGGAAAGACTAACTT-CTGCGAAAGCATTTGCCAAGGATGTTCTCATTAATCAAGAACGAAAGTTAAGGGATCGAAGATGATTAGATACCATCGTAGT Microallomyces_sp._CR74 TTAGGAAAGACTAACTT-CTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAAGGGATCGAAGATGATTAGATACCGTCGTAGT Catenaria_uncinata_WM103B TTAGGAAAGACTAACTT-CTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGGACGAAAGTTAAGGGATCGAAGACGATCAGATACCGTCGTAGT Paraphysoderma_sedebokerense_TJ2007a TTACGAAAGACTAACTT-CTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTCAGGGGATCGAAAAGGATTAGACACCCTTGTAGT Paraphysoderma_sedebokerense_FD61 TTACGAAAGACTAACTT-CTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTCAGGGGATCGAAAAGGATTAGACACCCTTGTAGT Physoderma_maculare_BL135 TTATGAAAGACTAACTT-CTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTCAGGGGATCGAAAAGGATTAGACACCCTTGTAGT Physoderma_dulichii_BL060 TTATGAAAGACTAACTT-CTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTCAGGGGATCGAAAAGGATTAGACACCCTTGTAGT Physoderma_maydis_BL004 TTATGAAAGACTAACTT-CTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTCAGGGGATCGAAAAGGATTAGACACCCTTGTAGT Urophlyctis_pulposa_SN TTATGAAAGACTAACTT-CTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTCAGGGGATCGAAAAGGATTAGACACCCTTGTAGT Nuclearia_simplex_CCAP1552 TTATGAAAGACTAACTA-CTGCGAAAGCATTCCACAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGATCGAAGACGATCAGATACCGTCGTAGT Coelomycidium_sp._TP2011 CCTTTTAAGACTATCAA-AAGCGAAAGCAATTGCCAAACACGTTCTCGTTGATCAAGAGCTAAACTTAGAGTAGTCAAAAAGATTAGATACCTTTGTAGT Blastocladiella_sp._JEL440 CTTAACCATAAACGATGCCGACCAGGGATCGGACGCTTGTAGTTTTTTTAAAAA-GACACGTCCGGCACCTTTT-GAGAAATCA-AAGTCTTTGGGTTCT Blastocladiella_brittanica_BR214 CTTAACCATAAACGATGCCGACCAGGGATCGGACGCTTGTAGTTTTTTTAAAAAAGACACGTCCGGCACCTTTT-GAGAAATCA-AAGTCTTTGGGTTCT Catenaria_sp._JEL339 CCTAACCATAAACGATGCCGACCAGGGATTAGATG-TGGTAGTTTTTTAAAAT--GACCCATCTAGCACCTTTT-GAGAAATCA-AAGTCTTTGGGTTCT Coelomomyces_quadangulatus_SN CCTAACCGTAAACGATGCCGACCAGGGATTAGATG-TGGTAGTTTTTTTAAAT--GACCCATCTAGCACCTTTT-GAGAAATCA-AAGTCTTTGGGTTCT Allomyces_arbusculus_HisB3Sc CTTAACCATAAACGATGCCGACCAGGGATCGGGCGCTTGTAGTTTTTTCCAAAAAGACACGTCCGGCACCTTTTTGAGAAATCA-AAGTTTTTGGGTTCT Allomyces_moniliformis_India3 CTTAACCATAAACGATGCCGACCAGGGATCGGGCGCTTGTAGTTTTTTT-AAAAAGACACGCCCGGCACCTTTT-GAGAAATCA-AAGTTTTTGGGTTCT Blastocladia_ramosa_WM101 CTTAACCATAAACGATGCCGACCAGGGATCGGATGCTTGTAGTTTTTTTAAAA-AGACACATCCGGCACCTTTT-GAGAAATCA-AAGTTTTTGGGTTCT Blastocladia_pringsheimii_WM102 CTTAACCATAAACGATGCCGACCAGGGATCGGGCGCTTGCAGTTTTTTTTCTACAGGCACGCCCGGCACCTTTT-GAGAAATCACAAGTTTTTGGGTTCT Microallomyces_sp._CR74 CTTAACCATAAACGATGCCGACCAGGGATCGGATGTTTGTAGTTTTTTT-AAAAAGACACATCCGGCACCTTTT-GAGAAATCA-AAGTTTTTGGGTTCT Catenaria_uncinata_WM103B CTTAACCATAAACGATGCCGACCAGGGATCGGACGCTTGTAGTTTTTTT-AAAAAGACACGTCCGGCACCTTTT-GAGAAATCA-AAGTTTTTGGGTTYT Paraphysoderma_sedebokerense_TJ2007a CTTGACCATAAACTATGCCGACTCGGGATTGGGCGATGTT----ATTTCTT----GACTCGCTCAGCACCGTAT-GAGAAATCA-AAGTCTTTGGGTTCT Paraphysoderma_sedebokerense_FD61 CTTGACCATAAACTATGCCGACTCGGGATTGGGCGATGTT----ATTTCTT----GACTCGCTCAGCACCGTAT-GAGAAATCA-AAGTCTTTGGGTTCT Physoderma_maculare_BL135 CTTGACCATAAACTATGCCGACTCGGGATTGGTAGATGTT----TTTTTTTATT-GACTCTATCAGCACCGTAT-GAGAAATCA-AAGTCTTTGGGTTCT Physoderma_dulichii_BL060 CTTGACCATAAACTATGCCGACTCGGGATTGGTAGATGTT----TTTTTT-ATT-GACTCTATCAGCACCGTAT-GAGAAATCA-AAGTCTTTGGGTTCT Physoderma_maydis_BL004 CTTGACCATAAACTATGCCGACTCGGGATTGGTAGATGTT----TTTTTTTATT-GACTCTATCAGCACCGTAT-GAGAAATCA-AAGTCTTTGGGTTCT Urophlyctis_pulposa_SN CTTGACCATAAACTATGCCGACTCGGGATTGGTAGATGTT----TTTTTTT----GACTCTATCAGCACCGTAT-GAGAAATCA-AAGTCTTTGGGTTCT Nuclearia_simplex_CCAP1552 CTTAACCATAAACTATGCCAACTAGGGATCAGTGGATGTTCCAATTTTTTATAC-GACTCCATTGGCACCTTAG-GAGAAATCACAAGTCTTTGGGTTCC Coelomycidium_sp._TP2011 TCTAAGTATAAACTATGCCATCTTAAGATTAGTCATTAGG----TTTTTAA----CCTTTGATTAGCATTATGT-GTGAAAACACTAACCTGGTGA---- Blastocladiella_sp._JEL440 GGGGGGAGTATGGT-CGCAAGGCTGAAACT-TAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAA Blastocladiella_brittanica_BR214 GGGGGGAGTATGGT-CGCAAGGCTGAAACT-TAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAA Catenaria_sp._JEL339 GGGGGGAGTATGGT-CGCAAGGCTGAAACT-TAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAA Coelomomyces_quadangulatus_SN GGGGGGAGTATGGT-CGCAAGGCTGAAACT-TAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAA Allomyces_arbusculus_HisB3Sc GGGGGGAGTATGGT-CGCAAGGCTGAAACT-TAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAA Allomyces_moniliformis_India3 GGGGGGAGTATGGT-CGCAAGGCTGAAACT-TAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAA Blastocladia_ramosa_WM101 GGGGGGAGTATGGT-CGCAAGGCTGAAACT-TAAAGGAATTGACGGAAGGGCACCACCAGATGTGGAGCTTGCGGCTTAATTTGACTCAACACGGGGAAA Blastocladia_pringsheimii_WM102 GGGGGGAGTACGGTTCGCAAGGCTGAAACT-TAAAGGAATTGACGGAAGGGCACCACCAGATGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAA Microallomyces_sp._CR74 GGGGGGAGTATGGT-CGCAAGGTTGAAACT-TAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAA Catenaria_uncinata_WM103B GGGGGGAGTATGGT-CGCAAGGCTGAAACT-TAAAGGAATTGACGGAAGGGCMCCCCCMGGAGTGGATTATGCGGCTTAATTTGACTCAACACGGGGAAA Paraphysoderma_sedebokerense_TJ2007a GGGGGGAGTATGGT-CGCAAGGCTGAAACT-TAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAA Paraphysoderma_sedebokerense_FD61 GGGGGGAGTATGGT-CGCAAGGCTGAAACT-TAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAA Physoderma_maculare_BL135 GGGGGGAGTATGGT-CGCAAGGCTGAAC------------TGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAA Physoderma_dulichii_BL060 GGGGGGAGTATGGT-TGCAAGGCTGAAACT-TAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAGA Physoderma_maydis_BL004 GGGGGGAGTATGGT-CGCAAGGCTGAAACTA-------ATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAA Urophlyctis_pulposa_SN GGGGGGAGTATGGT-CGCAAGGCTGAAACT-TAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAA Nuclearia_simplex_CCAP1552 GGGGGGAGTATGGT-CGCAAGGCTGAAACT-TAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAA Coelomycidium_sp._TP2011 ---------------------------------------------------------------------------------------------------- Blastocladiella_sp._JEL440 CTCACCAGGTCCAGACATGGTAAGGATTGACAGATTGAAAGCTCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTCGTGGATTGATTTG Blastocladiella_brittanica_BR214 CTCACCAGGTCCAGACATGGTAAGGATTGACAGATTGAAAGCTCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTCGTGGATTGATTTG Catenaria_sp._JEL339 CTCACCAGGTCCAGACTCAGTAAGGATTGACAGATTGAAAGCTCTTTCTTGATTTTGAGGGTGGTGGTGCATGGCCGTTCTTAGTTCGTGGATTGATTTG Coelomomyces_quadangulatus_SN CTCACCAGGTCCAGACTCAGTAAGGATTGACAGATTGAAAGCTCTTTCTTGATTTTGAGGGTGGTGGTGCATGGCCGTTCTTAGTTCGTGGATTGATTTG Allomyces_arbusculus_HisB3Sc CTCACCAGGTCCAGACATGGTAAGGATTGACAGATTGAAAGCTCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTCGTGGATTGATTTG Allomyces_moniliformis_India3 CTCACCAGGTCCAGACATGGTAAGGATTGACAGATTGAAAGCTCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTCGTGGATTGATTTG Blastocladia_ramosa_WM101 CTCACCAGGTCCAGACTTAATAAGGATTGACAGATTGAAAGCTCTTTCTTGATTTTAAGGGTGGTGGTGCATGGCCGTTCTTAGTTCGTGGATTGATTTG Blastocladia_pringsheimii_WM102 CTCACCAGGTCCAGACTTTATAAGGATTGACAGATTGAAAGCTCTTTCTTGATTTGAAGGGTGGTGGTGCATGGCCGTTCTTAGTTCGTGGATTGATTTG Microallomyces_sp._CR74 CTCACCAGGTCCAGACATGGTAAGGATTGACAGATTGAAAGCTCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTCGTGGATTGATTTG Catenaria_uncinata_WM103B CTCACCAGGTCCAGACATGGTAAGGATTGACAGATTGAAAGCTCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTCGTGGATTGATTTG Paraphysoderma_sedebokerense_TJ2007a CTCACCAGGTCCAGACATAGTAAGGATTGACAGATTGAGAGCTCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTG Paraphysoderma_sedebokerense_FD61 CTCACCAGGTCCAGACATAGTAAGGATTGACAGATTGAGAGCTCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTG Physoderma_maculare_BL135 CTCACCAGGTCCAGACATAGTAAGGATTGACAGATTGATAGCTCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTG Physoderma_dulichii_BL060 CTCACCAGGTCCAGACATAGTAAGGATTGACAGATTGAGAGCTCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTG Physoderma_maydis_BL004 CTCACCAGGTCCAGACATAGTAAGGATTGACAGATTGAGAGCTCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTG Urophlyctis_pulposa_SN CTCACCAGGTCCAGACATAGTAAGGATTGACAGATTGAGAGCTCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTG Nuclearia_simplex_CCAP1552 CTCACCAGGTCCAGACATGGTAAGGATTGACAGATTGAGAGCTCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTG Coelomycidium_sp._TP2011 ---------------------------------------------------------------------------------------------------- Blastocladiella_sp._JEL440 TCTGGTTAATTCCGATAACGAACGAGACCTTATTCTGCTAATTAGTTG---------GCGCTAATTT----CGGTTAGTGTTCTTTTT------------ Blastocladiella_brittanica_BR214 TCTGGTTAATTCCGATAACGAACGAGACCTTATTCTGCTAATTAGTTG---------GCGCTAGCTT--------TTTTGCTAGTGAA------------ Catenaria_sp._JEL339 TCTGGTTAATTCCGATAACGAACGAGACCTTACTCTGCTAATTACTTG---------GGCTTTGCCT-------TGTGTAAAGTATCT------------ Coelomomyces_quadangulatus_SN TCTGGTTAATTCCGATAACGAACGAGACCTTACTCTGCTAATTACTTG---------GGCTTTGCCT-------TGTGTAAAGTAACT------------ Allomyces_arbusculus_HisB3Sc TCTGGTTAATTCCGATAACGAACGAGACCTTTTCCTACTCGTTACTTG---------CTCATGGG------TTTTATCTCATGGCAC------------- Allomyces_moniliformis_India3 TCTGGTTAATTCCGATAACGAACGAGACCTTTTCCTACTCGTTAGCTG---------CTCATGGC------TTCT-TGTCATGGTAC------------- Blastocladia_ramosa_WM101 TCTGGTTAATTCCGATAACGAACGAGACCTTTTCCTACTCGTTAGTTG---------CGCATGG-------TTTTTTATCATGTATT------------- Blastocladia_pringsheimii_WM102 TCTGGTTAATTCCGATAACGAACGAGACCTTTTCCTACTCGTTAGTTG---------CGCCTGGGAT----TTTTTTCTCAGGTTTTT------------ Microallomyces_sp._CR74 TCTGGTTAATTCCGATAACGAACGAGACCTTTTCCTACTAATTAGTTG---------TGCGTTGAA-----TTTTCTTTAACGTT--------------- Catenaria_uncinata_WM103B TCTGGTTAATTCCGATAACGAACGAGACCTTAACCTACTAGTTGGCTG---------CGCTTGGGA------TTTATTTCAGGTTTYTTT---------- Paraphysoderma_sedebokerense_TJ2007a TCTGGTTAATTCCGATAACGAACGAGACCTTAACCTGCTAAATAGTCA-----------CACTAA--------CCTT----GGTTGGTGG---------- Paraphysoderma_sedebokerense_FD61 TCTGGTTAATTCCGATAACGAACGAGACCTTAACCTGCTAAATAGTCA-----------CACTAA--------CCTT----GGTTGGTGG---------- Physoderma_maculare_BL135 TCTGGTTAATTCCGATAACGAACGAGACCTTAACCTGCTAACTAGTCA-----------CGTTAA--------TTTTTTT-AATTGATGG---------- Physoderma_dulichii_BL060 TCTGGTTAATTCCGATAACGAACGAGACCTTAACCTGCTAAATAGTCA-----------CGCTAA--------TTTTTTTAAATTGGTGG---------- Physoderma_maydis_BL004 TCTGGTTAATTCCGATAACGAACGAGACCTTAACCTGCTAAATAGTCA-----------CGCTAA--------CTTTTTTAAGTTGGTGG---------- Urophlyctis_pulposa_SN TCTGGTTAATTCCGATAACGAACGAGACCTTGACCTGCTAAATAGTCA-----------CGCTAA--------CTTTTTCAAGTTGGTGG---------- Nuclearia_simplex_CCAP1552 TCTGGTTAATTCCGTTAACGAACGAGACCTTAACCTGCTAAATAGTTGACATCTTTTGGCAACAAAAGGTGCGTCTTTTTAAAAAAAAGGGGGAAAGGAG Coelomycidium_sp._TP2011 ---------------------------------------------------------------------------------------------------- Blastocladiella_sp._JEL440 ------------TTCCAACTTCTTAGAGAGACAATTGATGTTTAACCAAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCC Blastocladiella_brittanica_BR214 ------------TTCCAACTTCTTAGAGAGACAATTGATGTTTAACCAAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCC Catenaria_sp._JEL339 ------------TTCCAAGTTCTTAGAGAGACAGCTGGCGTTTAGCCAGAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCC Coelomomyces_quadangulatus_SN ------------TGCCAAGTTCTTAGAGAGACAGCTGGCGTTTAGCCAGAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCC Allomyces_arbusculus_HisB3Sc --------------GCAAGTTCTTAGCGGGACTGCTGGCGTTTAGCCAGAGGAAGTTCGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCC Allomyces_moniliformis_India3 --------------GCAGCTTCTTAGCGGGACTGCTGGCGTTTAGCCAGAGGAAGTTCGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCC Blastocladia_ramosa_WM101 --------------GCAGCTTCTTAGCGGGACAGCTGGCGTTTAGCCAGAGGAAGTTCGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCC Blastocladia_pringsheimii_WM102 --------------GCAACTTCTTAGCGGGACAGCTGGCGTTTAGCCAGAGGAAGTTCGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCC Microallomyces_sp._CR74 --------------GCAACTTCTTAGCGGGACAGCTGGCGTTTAGCCAGAGGAAGTTCGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCC Catenaria_uncinata_WM103B -----------TTTGCAGCCTYTTAGCGGGACAGCTGGCATTTAGCCAGAGGAAGTTTGAGGCAATAACAGGTYTGTGATGCCCTTAGATGTTTTGGGCC Paraphysoderma_sedebokerense_TJ2007a --------------CTGACTTCTTAGAGGGACTATTGACGTTTAGTCAATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCC Paraphysoderma_sedebokerense_FD61 --------------CTGACTTCTTAGAGGGACTATTGACGTTTAGTCAATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCC Physoderma_maculare_BL135 --------------CCGACTTCTTAGAGGGACTATTGACGTTTAGTCAATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCC Physoderma_dulichii_BL060 --------------TCGACTTCTTAGAGGGACTATTGACGTTTAGTCAATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCC Physoderma_maydis_BL004 --------------CCGACTTCTTAGAGGGACTATTGACGTTTAGTCAATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCC Urophlyctis_pulposa_SN --------------CCGACTTCTTAGAGGGACTATTGACGTTTAGTCAATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCC Nuclearia_simplex_CCAP1552 GCAACTTCTTTTCTCTAACTTCTTAGAGGGACTATCAGTGTTTAACTGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGG-CT Coelomycidium_sp._TP2011 ---------------------------------------------------------------------------------------------------- Blastocladiella_sp._JEL440 GCACGCGCGCTACACTGATGAAGTCAACGAGTATTAACGTGGGTTGTTTAGTTGTTAACGCAGCTAGGCAGCTCTTA---TTCCTGATCCGAAAGG---- Blastocladiella_brittanica_BR214 GCACGCGCGCTACACTGATGAAGTCAACGAGTAATTTAATAG-TGGCATGGTTGTTAACGCATCCAGGTTGCT-TAA---TTCCTGATCCGAAAGG---- Catenaria_sp._JEL339 GCACGCGCGCTACACTGATGAAGTCAGCGAGTTTTCTAATTTGCTGGTTGGTTTAGTCTTTGGCTGGCCAACTAGTAAGGTTCCTGTTCCGAAAGG---- Coelomomyces_quadangulatus_SN GCACGCGCGCTACACTGATGAAGTCAGCGAGTTTTCTAATTTGCTGGTTGGTTTAGTCTTTGGCTGGCCAACTAGTAAGGTTCCTGTTCCGAAAGG---- Allomyces_arbusculus_HisB3Sc GCACGCGCGCTACACTGATGCAGTCAGCAAGTTTTTT-AACTGGC-TGTAGTTCTTTCGGGAGC----TATGGTCGAT--TCCCTTGCCCGAAAGG---- Allomyces_moniliformis_India3 GCACGCGCGCTACACTGATGCAGTCAGCAAGTTTTTTTAACTGGC-TGCGGTTCTTTCGGGAGC----CGTGGTCGAT--TTCCTTGCCCGAAAGG---- Blastocladia_ramosa_WM101 GCACGCGTGCTACACTGATGCAGTCAGCAAGTTTTT--AACTGGCTTGTTCTGTCTTTGGCAGT----TCAGGTCGAT--TTCCTTCTCCGAAAGG---- Blastocladia_pringsheimii_WM102 GCACGCGCGCTACACTGATGCAGTCACCGAGTACTT--GACTGGAGTTTTGGTTTTTTGCCAA------AATTCCAAT--TTCCTTTTCCGAAAGG---- Microallomyces_sp._CR74 GCACGCGCGCTGCACTGATGCAGTCAGCAAGTTTTTTTAGCTGGCGGAAAGGTCTTTTTGATCT----TTTCGTCGAT--TTCCTGGTCCGAAAGG---- Catenaria_uncinata_WM103B GCACGCGTGCTWCACTGATGAAGTCAACAAGTTTTAACMCATGCTGTGCTCTCCTTTTGGGGGGGGTGCAGTGTGGAT--TTCCTTGGCCGAAAGG---- Paraphysoderma_sedebokerense_TJ2007a GCACGCGCGCTACACTGATGAAGTCAACGAGT--TTATAA------------------------------------------CCTTGGCCGGAAGG---- Paraphysoderma_sedebokerense_FD61 GCACGCGCGCTACACTGATGAAGTCAACGAGT--TTATAA------------------------------------------CCTTGGCCGGAAGG---- Physoderma_maculare_BL135 GCACGCGCGCTACACTGATGAAGCCAACGAGTATTTTTGT------------------------------------------CCTTGGCCGGAAGG---- Physoderma_dulichii_BL060 GCACGCGCGCTACACTGATGAAGCCAACGAGT--TTATAA------------------------------------------CCTTGGCCGGAAGG---- Physoderma_maydis_BL004 GCACGCGCGCTACACTGATGAAGCCAACGAGT--TTATAA------------------------------------------CCTTGACCGGAAGG---- Urophlyctis_pulposa_SN GCACGCGCGCTACACTGATGAAGCCAACGAGT--TTATAA------------------------------------------CCTTGGCCGGAAGG---- Nuclearia_simplex_CCAP1552 GCACGCGCGCTACACTGACGAAGTCAGCGAGT--ATATAA------------------------------------------CCTTGTCCGGAAGGACAT Coelomycidium_sp._TP2011 ---------------------------------------------------------------------------------------------------- Blastocladiella_sp._JEL440 -ACTGGGTAATCTTTTGAAACTTCATCGTGATGGGGATTGGCCTTTGTAATTATCGGCCATGAACGAGGAATTCCTAGTAAGTGTGGGTCATCAGCCCAC Blastocladiella_brittanica_BR214 -ACTGGGTAATCTTTTGAAACTTCATCGTGATGGGGATTGGCCTTTGTAATTATCGGCCATGAACGAGGAATTCCTAGTAAGTGTGGGTCATCAGCCCAC Catenaria_sp._JEL339 -ATTGGGTAATCTTATGAAACTTCATCGTGATGGGGATTGGGCTTTGTAATTATCGCCCATGAACGAGGAATTCCTAGTAAGTGTGGGTCATCAGCCCAC Coelomomyces_quadangulatus_SN -ATTGGGTAATCTTATGAAACTTCATCGTGATGGGGATTGGGCTTTGTAATTATCGCCCATGAACGAGGAATTCCTAGTAAGTGTGGGTCATCAGCCCAC Allomyces_arbusculus_HisB3Sc -GTTGGGTAATCTTTTGAAACTGCATCGTGATGGGGATCGACCTTTGTAATTATCGGTCGTGAACGAGGAATTCCTAGTAAGTGTGGGTCATCAGCCCAC Allomyces_moniliformis_India3 -GTTGGGTAATCTTTTGAAACTGCATCGTGATGGGGATCGACCTTTGTAATTATCGGTCGTGAACGAGGAATTCCTAGTAAGTGTGGGTCATCAGCCCAC Blastocladia_ramosa_WM101 -AGCGGGTAATCTTTTGAAACTGCATCGTGATGGGGATCGACCTTTGTAATTTTCGGTCGTGAACGAGGAATATCTAGTAAGTGTGGGTCATCAGCCCAC Blastocladia_pringsheimii_WM102 -AACGGGTAATCTGTTGAAACTGCATCGTGATGGGGATCGACCTTTGTAATTTTCGGTCGTGAACGAGGAATATCTAGTAAGTGTGGGTCATCAGCCCGC Microallomyces_sp._CR74 -ATTGGGTAATCTTTTGAAACTGCATCGTGATGGGGATCGACCTTTGTAATTATCGGTCGTGAACGAGGAATTCCTAGTAAGTGTGGGTCATCAGCCCAC Catenaria_uncinata_WM103B -TCTGGGTAATCTTTTGAAACTTCATCGTGATGGGGATTGACCTTTGTAATTATCGGTCATGAACGAGGAATTCCTAGTAAGTGTGGGTCATCAGCCCGC Paraphysoderma_sedebokerense_TJ2007a -TCTGGGTAATCTTGTGAAACTTCATCGTGCTGGGGATAGACCATTGCAATTATTGGTCTTCAACGAGGAATTCCTAGTAAGCGTGAGTCATCAGCTCGC Paraphysoderma_sedebokerense_FD61 -TCTGGGTAATCTTGTGAAACTTCATCGTGCTGGGGATAGACCATTGCAATTATTGGTCTTCAACGAGGAATTCCTAGTAAGCGTGAGTCATCAGCTCGC Physoderma_maculare_BL135 -TCTGGGTAATCTTGTGAAACTTCATCGTGATGGGGATAGACCATTGCAATTATTGGTCTTCAACGAGGAATTCCTAGTAAGCGTGAGTCATCAGCTCGC Physoderma_dulichii_BL060 -TCTGGGTAATCTTGTGAAACTTCATCGTGCTGGGGATAGACCATTGCAATTATTGGTCTTCAACGAGGAATTCCTAGTAAGCGTGAGTCATCAGCTCGC Physoderma_maydis_BL004 -TCTGGGTAATCTTGTGAAACTTCATCGTGCTGGGGATAGACCATTGCAATTATTGGTCTTCAACGAGGAATTCCTAGTAAGCGTGAGTCATCAGCTCGC Urophlyctis_pulposa_SN -TCTGGGTAATCTTGTGAAACTTCATCGTGCTGGGGATAGACCATTGCAATTATTGGTCTTCAACGAGGAATTCCTAGTAAGCGTGAGTCATCAGCTCGC Nuclearia_simplex_CCAP1552 TTTAGGGTAATCTTGTGAAACTTCGTCGTGATGGGGATAGATCATTGCAATTATTGATCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGC Coelomycidium_sp._TP2011 ---------------------------------------------------------------------------------------------------- Blastocladiella_sp._JEL440 GCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGA Blastocladiella_brittanica_BR214 GCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGA Catenaria_sp._JEL339 GCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGA Coelomomyces_quadangulatus_SN GCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGA Allomyces_arbusculus_HisB3Sc GCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGA Allomyces_moniliformis_India3 GCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGA Blastocladia_ramosa_WM101 GCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGA Blastocladia_pringsheimii_WM102 GCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGA Microallomyces_sp._CR74 GCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGA Catenaria_uncinata_WM103B GCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGA Paraphysoderma_sedebokerense_TJ2007a GTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGA Paraphysoderma_sedebokerense_FD61 GTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGA Physoderma_maculare_BL135 GTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGA Physoderma_dulichii_BL060 GTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGA Physoderma_maydis_BL004 GTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGA Urophlyctis_pulposa_SN GTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGA Nuclearia_simplex_CCAP1552 GTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGA Coelomycidium_sp._TP2011 ------------------------------------------------- ; END; begin Paup; exclude Uninf Constant; outgroup CCAP1552; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1749; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1749; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1749; END; BEGIN TREES; Title 'Trees from "FD61150812.tre"'; LINK Taxa = Taxa; TRANSLATE [0] 1 Blastocladiella_sp._JEL440, [1] 2 Blastocladiella_brittanica_BR214, [2] 3 Catenaria_sp._JEL339, [3] 4 Coelomomyces_quadangulatus_SN, [4] 5 Allomyces_arbusculus_HisB3Sc, [5] 6 Allomyces_moniliformis_India3, [6] 7 Blastocladia_ramosa_WM101, [7] 8 Blastocladia_pringsheimii_WM102, [8] 9 Microallomyces_sp._CR74, [9] 10 Catenaria_uncinata_WM103B, [10] 11 Paraphysoderma_sedebokerense_TJ2007a, [11] 12 Paraphysoderma_sedebokerense_FD61, [12] 13 Physoderma_maculare_BL135, [13] 14 Physoderma_dulichii_BL060, [14] 15 Physoderma_maydis_BL004, [15] 16 Urophlyctis_pulposa_SN, [16] 17 Nuclearia_simplex_CCAP1552, [17] 18 Coelomycidium_sp._TP2011; TREE PAUP_1 = (17:100,((((1:100,2:100):100,(3:100,4:100):100):75,((((5:100,6:100):100,(7:100,8:100):100):68,9:100):99,10:100):98):100,18:100):99,((11:100,12:100):100,(13:100,(14:100,15:100):86,16:100):74):100); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1439400808781; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7954334887398069884; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8030975712634598294; mqVersion 302; checksumv 0 3 2715340314 null getNumChars 1749 numChars 1749 getNumTaxa 18 numTaxa 18 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 649446.0 sumSquares -5.534023222112846E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #7954334887398069884 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 888.1439400264540.4128076548094335031; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 392; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8030975712634598294 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 280; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 392; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;