#NEXUS
[written Mon Aug 24 12:49:31 BRT 2015 by Mesquite  version 3.04 (build 725) at fernando-To-be-filled-by-O-E-M/127.0.1.1]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=9;
	TAXLABELS
		'Caldanaerobacter subterraneus pacificus_CDSM653 01584' 'Caldanaerobacter subterraneus yonseiensis_WP_022587812' 'Geobacillus sp. Y4.1MC1 YP_003989192.1' 'Geobacillus thermoglucosidasius YP_004587924.1' 'Moorella thermoacetica YP_431021.1' 'Thermacetogenium phaeum YP_006921297.1' 'Caldanaerobacter subterraneus tengcongensis_NP_623300.2' 'Thermoanaerobacter sp. YS13 THYS13_RS04680' 'Escherichia coli YP_006125373.1' 
	;

END;


BEGIN CHARACTERS;
	TITLE  Character_Matrix;
	DIMENSIONS  NCHAR=216;
	FORMAT DATATYPE = Protein GAP = - MISSING = ?;
	MATRIX
	'Caldanaerobacter subterraneus pacificus_CDSM653 01584'  MSGTNIVNVLSVLLILTSMLVVETRKLRMAAYMYRFQSLVLVTIFLSIAVFMEAKPLYIWSITALITKTFLVPYLILKVIERVKEQEE-GVAIDRKLTIILAVGILALSFAVVEPFHMQAVLKLRVALAVSIAHFMLGLLCILARKNALKQILGYCLMENGSHLTLAIMAYNAPETVEIGILTDAVFAVLIMTIIARRLFKDFGTLDTDKLTLLKG
	'Caldanaerobacter subterraneus yonseiensis_WP_022587812' MSGTSIVNVLSVLLILTSMLVVETRKLRMAAYMYRFQSLVLVTIFLSIAVFMEAKPLYIWSITALITKTFLVPYLILKVIKRVKEQEE-GVAIDRKLTIILAVGILALSFAVVEPFHMQAVLKLRVALAVSIAHFMLGLLCILARKNALKQILGYCLMENGSHLTLAIMAYNAPETVEIGILTDAVFAVLIMTIIARRLFKDFGTLDTDKFTLLKG
	'Geobacillus sp. Y4.1MC1 YP_003989192.1'                 MSGTSVVNALTVLLILTSMLVVETKRLRLAAYMYSIQSLVLVSIFLSLAVFMHAEPLYIWSVTAFITKTILVPYLIIRTLKKVGEQEE-GKSLKTTTSVFFAVLLVALSFVVVGSFQVYAALKIKIALAVSIAHFLLGLLCMLTRRNALKQILGYCLMENGSHLTLALMAYNAPETVEIGILTDAVFAVLIMLVIAKRLSKGFGTLDTGKHTLLKG
	'Geobacillus thermoglucosidasius YP_004587924.1'         MSGTSVVNALTVLLILTSMLVVETKRLRLAAYMYSIQSLVLVSIFLSLAVFMHAEPLYIWSVTAFITKTILVPYLIIRTLKKVGEQEE-GKSLKTTTSVFFAVLLVALSFVVVGSFQVYAALKIKIALAVSIAHFLLGLLCMLTRRNALKQILGYCLMENGSHLTLALMAYNAPETVEIGILTDAVFAVLIMLVIAKRLSKGFGTLDTGKHTLLKG
	'Moorella thermoacetica YP_431021.1'                     MSGTSVVNTLAVLLILTSMLVVETRKLRMAAYMYSIQSLVLVAIFLSLAVFMHAEPLYIWSITALITKTFLVPYLILRTIKKVGDQEETGLALTTATSVFLAACMVALSFVIVEPFQVQAILKLKVALAVSLAHFLLGVLCILARKNALKQILGYCLMENGSHLTLAIMAYNAPETVEIGILTDAVFAVIILTIIARRLFKAFNTLDTDKLTLLKG
	'Thermacetogenium phaeum YP_006921297.1'                 MTGVDIVNSLAVLLIITSLLVVESRSPRLSAHLYSLQSLVLVLIFISLAVFMEATPLYIWSITALLTKVILVPLILVRALRRVGDEGEPGTILSPAASVLTAAIFVGLAFIIVTPFHNEAILKLKPALAVSIAHFLLGLLCILTRRNAVKQILGYCLMENGSHLTLAFMAYNAPETVEIGILTDAIFAVLIMCIITKGLFRVTGTLDTDRLTSLKG
	'Caldanaerobacter subterraneus tengcongensis_NP_623300.2' MSGTNIVNVLSVLLILTSMLVVETRKLRMAAYMYRFQSLVLVTIFLSIAVFMEAKPLYIWSITALITKTFLVPYLILKVIERVKEQEE-GVAIDRKLTIILAVGILALSFAVVEPFHMQAVLKLRVALAVSIAHFMLGLLCILARKNALKQILGYCLMENGSHLTLAIMAYNAPETVEIGILTDAVFAVLIMTIIARRLFKDFGTLDTDKLTLLKG
	'Thermoanaerobacter sp. YS13 THYS13_RS04680'             MSGTNIVNVLSVLLILTSMLVVETRKLGMAAYMYRFQSLVLVTIFLSIAVFMEAKPLYIWSITALITKTFLVPYLILKFLKRVKEQEE-GVAIDRKLTIILAVGILALSFAVVEPFHMQAVLKLRVALAVSIAHFMLGLLCILARKNALKQILGYCLMENGSHLTLAIMAYNAPETVEIGILTDAVFAVLIMTIIARRLFKDFGTLDTDKLTLLKG
	'Escherichia coli YP_006125373.1'                        MTGSMIVNNLAGLMMLTSLFVISVKSYRLSCGFYACQSLVLVSIFATLSCLFAAEQLLIWSASAFITKVLLVPLIMTYAARNIPQNIPEKALFGPAMMALLAALIVLLCAFVVQPVKLPMATGLKPALAVALGHFLLGLLCIVSQRNILRQIFGYCLMENGSHLVLALLAWRAPELVEIGIATDAIFAVIVMVLLARKIWRTHGTLDVNNLTALKG

;


END;

BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1 -  216;

END;

BEGIN NOTES;

	TAXABITS   TAXA = Taxa NAME = newlyAddedTaxon on =  1 -  9;

END;

BEGIN CODONS;
	CODESET * UNTITLED   =  universal:  1 -  216;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Mk1 (est.)':  1 -  216;
END;

BEGIN TREES;
	Title 'Trees from "HyfE.tre"';
	LINK Taxa = Taxa;
	TRANSLATE
[0] 		n0 'Caldanaerobacter subterraneus pacificus_CDSM653 01584',
[1] 		n1 'Caldanaerobacter subterraneus yonseiensis_WP_022587812',
[2] 		n2 'Geobacillus sp. Y4.1MC1 YP_003989192.1',
[3] 		n3 'Geobacillus thermoglucosidasius YP_004587924.1',
[4] 		n4 'Moorella thermoacetica YP_431021.1',
[5] 		n5 'Thermacetogenium phaeum YP_006921297.1',
[6] 		n6 'Caldanaerobacter subterraneus tengcongensis_NP_623300.2',
[7] 		n7 'Thermoanaerobacter sp. YS13 THYS13_RS04680',
[8] 		n8 'Escherichia coli YP_006125373.1';
	TREE tree_1 = (((((n7:0.014088,(n6:0.000001,n0:0.000001)0.795000:0.00462)0.751000:0.004335,n1:0.004902)1.000000:0.180627,n4:0.044679)0.699000:0.051668,(n5:0.175653,n8:0.853231)0.963000:0.205135)0.993000:0.151662,n3:0.000001,n2:0.000001)root;

END;


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end;