#NEXUS
[written Mon Aug 24 22:06:11 BRT 2015 by Mesquite  version 3.04 (build 725) at fernando-HP-Pavilion-15-Notebook-PC/127.0.1.1]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=10;
	TAXLABELS
		'Caldanaerobacter subterraneus yonseiensis_ERM91252.1' 'Caldithrix abyssi WP_006928793.1' 'Caloramator australicus WP_008908954.1' 'Clostridium WP_006776763.1' 'Pyrococcus horikoshii NP_877851.1' Thermoanaerobacter_ethanolicus_EGD52039.1 Thermoanaerobacter_siderophilus_EIW00250.1 Thermoanaerobacter_thermohydrosulfuricus_EMT39678.1 'Thermoanaerobacter wiegelii YP_004818835.1' 'Thermobrachium celere WP_018663241.1' 
	;

END;


BEGIN CHARACTERS;
	TITLE  Character_Matrix;
	DIMENSIONS  NCHAR=95;
	FORMAT DATATYPE = Protein GAP = - MISSING = ?;
	MATRIX
	'Caldanaerobacter subterraneus yonseiensis_ERM91252.1' ----MFLSVIIAVIMIFGAMWTIVTEDLFKAIVIFAIVSLSSSIMFLLMQAPDVAITEAAIGSGITTALFIFTYKKV----EEEKDER-------
	'Caldithrix abyssi WP_006928793.1'                    ---MTLIVILLGIGMVVAALAAVYFNNLIAAVVAGGIVSLFASVLYLILAAPDVAMTEAAIGAGLSTAIFIYAVKKT----REQEVEHD------
	'Caloramator australicus WP_008908954.1'              ---MYYLGLIIAFIMAFGSLWALLTDDLFKAIVVFGIVSLSSSVMFLLMQAPDVAITEAAIGSGITTALFIFTYKKL----EDRKDER-------
	'Clostridium WP_006776763.1'                          ---MKLFEIILLICLIVCAVSVAFTKDLLTSIVIFMSYSLIMCIIWILLQSPDLAITEAAVGAGVTSILFFITLKKIRAIRKEERDEQDEGSL--
	'Pyrococcus horikoshii NP_877851.1'                   MNCIACVEDIIVLLMIISAILSVEWRDLLAATVGMAAVSLFASILFFLLQAPDVAMTEAAIGAALSGAVFIFAIKRTYRY-ESEEEEKPGWWVRW
	Thermoanaerobacter_ethanolicus_EGD52039.1             ----MFLSVIIAVIMIFGAMWTIVTEDLFKAIVIFAIVSLSSSIMFLLMQAPDVAITEAAIGSGITTALFIFTYKKV----EEEKDER-------
	Thermoanaerobacter_siderophilus_EIW00250.1            ----MFLSVIIAVIMIFGAMWTIVTEDLFKAIVIFAIVSLSSSIMFLLMQAPDVAITEAAIGSGITTALFIFTYKKV----EEEKDER-------
	Thermoanaerobacter_thermohydrosulfuricus_EMT39678.1   ----MFLSVIIAVIMIFGAMWTIVTEDLFKAIVIFAIVSLSSSIMFLLMQAPDVAITEAAIGSGITTGLFIFTYKKV----EEEKDER-------
	'Thermoanaerobacter wiegelii YP_004818835.1'          ----MFLSVIIAVIMIFGAMWTIVTEDLFKAIVIFAIVSLSSSIMFLLMQAPDVAITEAAIGSGITTALFIFTYKKV----EEEKDER-------
	'Thermobrachium celere WP_018663241.1'                ---MINLAIFIAVVMFLGAIWTVLTEDVFKAIVIFGIVSLMSSVMFLLMQAPDVAITEAAIGSGITTALFIFTYKKM----EERKDER-------

;


END;

BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1 -  95;

END;

BEGIN NOTES;

	TAXABITS   TAXA = Taxa NAME = newlyAddedTaxon on =  1 -  10;

END;

BEGIN CODONS;
	CODESET * UNTITLED   =  universal:  1 -  95;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Mk1 (est.)':  1 -  95;
END;

BEGIN TREES;
	Title 'Trees from "MbxD.tre"';
	LINK Taxa = Taxa;
	TRANSLATE
[0] 		n0 'Caldanaerobacter subterraneus yonseiensis_ERM91252.1',
[1] 		n1 'Caldithrix abyssi WP_006928793.1',
[2] 		n2 'Caloramator australicus WP_008908954.1',
[3] 		n3 'Clostridium WP_006776763.1',
[4] 		n4 'Pyrococcus horikoshii NP_877851.1',
[5] 		n5 Thermoanaerobacter_ethanolicus_EGD52039.1,
[6] 		n6 Thermoanaerobacter_siderophilus_EIW00250.1,
[7] 		n7 Thermoanaerobacter_thermohydrosulfuricus_EMT39678.1,
[8] 		n8 'Thermoanaerobacter wiegelii YP_004818835.1',
[9] 		n9 'Thermobrachium celere WP_018663241.1';
	TREE tree_1 = ((((n0:0.000001,(((n7:0.012048,n8:0.000001)0.0000:0.000001,n5:0.000001)0.0000:0.000001,n6:0.000001)0.0000:0.000001)0.0000:0.000002,(n9:0.152565,n2:0.185618)0.8570:0.121578)0.8460:0.264251,n3:0.843393)0.9490:0.0765135,(n4:0.419348,n1:0.580609)0.9490:0.3392975)root;

END;


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