#NEXUS
[written Wed Aug 26 00:48:06 BRT 2015 by Mesquite  version 3.04 (build 725) at fernando-HP-Pavilion-15-Notebook-PC/127.0.1.1]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=14;
	TAXLABELS
		'Caldanaerobacter subterraneus tengcongensis_NP_621823.1' 'Caldanaerobacter subterraneus yonseiensis_ERM91334.1' 'Coprothermobacter platensis WP_018962517.1' 'Thermoanaerobacter ethanolicus WP_003868937.1' 'Thermoanaerobacter indiensis WP_019907183.1' 'Thermoanaerobacter italicus YP_003477430.1' 'Thermoanaerobacter mathranii YP_003677326.1' 'Thermoanaerobacter siderophilus WP_006569903.1' 'Thermoanaerobacter thermohydrosulfuricus WP_004399991.1' 'Thermoanaerobacter wiegelii YP_004818928.1' 'Thermoanaerobacterium saccharolyticum YP_006391298.1' 'Thermoanaerobacterium thermosaccharolyticum YP_003850790.1' 'Thermoanaerobacterium thermosaccharolyticum YP_007297548.1' 'Thermoanaerobacterium xylanolyticum YP_004469841.1' 
	;

END;


BEGIN CHARACTERS;
	TITLE  Character_Matrix;
	DIMENSIONS  NCHAR=806;
	FORMAT DATATYPE = Protein GAP = - MISSING = ?;
	MATRIX
	'Caldanaerobacter subterraneus tengcongensis_NP_621823.1'   ------------------------MQSNLLLLSILFPIAAGVVVLFLRQSNI----RK-GFIAVALAVIVLSS---LVL----LGTLKV--PDV--FTASDFYGILDVAIKIADFVLLVYVIYISFK--------IKEWRATFFAVLQLIPLIYFEFF--MLKEHEM--EMFFVDELAIIMNLIISIVGSLIALYAFSYMDHHE-EHLHVS--PTRQPRFFAIILVFLGAMNGLVLSNNLMWM-YFFWEVTTLSSFLLIGHDQTEEAIRNAARALWINMMGGFALLLGIIFIYA---N--YST----ISLVEVLKIQN----------AS-YILLPMFFIAFAAFTKSAQMPFQSWLLGAMVAPTPVSALLHSSTMVKAGIYILLRFSPLFR----GTL-LSDFIAVYGAFTFLATAFLAVSQSNAKRILAYSTVSNLGLMIASIGINTSSAIAAAILLLIFHAISKALLFLSVGTIEQHIGSRDIEDMKGLINKMPVTTSITFVGILTLMAAPFGMLVSKWLILEVA--A-GSI----II-SIILAIGSALTVLYYTRWIGNILSGT------------------------YFTKKEQERMDVPV-GISLYSLTGLAVILSLMIVSLYNMLV-IPQIVN--MK-MD------VA-LKAAR----GYL------YTAS-------GGFMIYPIF-LTIGLAIVLSL--ISIQK---ASKTAVKVTPYNAGLNYV---EEKSF----------DVKNYYLTTFATEKTLTKYFNYV-SIALI---AVIL--------GGAI-L----
	'Caldanaerobacter subterraneus yonseiensis_ERM91334.1'      ------------------------MQSNLLLLSILFPMAAGVVVLFLRQSNI----RK-GFIAVALAVIVLSS---LVL----LGTLKV--PDV--FTASDYYGILDVAIKIADFVLLVYVIYISFK--------IKEWRATFFAVLQLIPLIYFEFF--MLKEHEM--EMFFVDELAIIMNLIISIVGSLIALYAFSYMDHHE-EHLHVS--PTRQPRFFAIILVFLGAMNGLVLSNNLMWM-YFFWEVTTLSSFLLIGHDQTEEAIRNAARALWINMMGGFALLLGIIFIYA---N--YST----ISLVEVLKIQN----------AS-YILLPMFFIAFAAFTKSAQMPFQSWLLGAMVAPTPVSALLHSSTMVKAGIYILLRFSPLFR----GTL-LSDFIAVYGAFTFLATAFLAVSQSNAKRILAYSTVSNLGLMIASIGINTSSAIAAAILLLIFHAISKALLFLSVGTIEQHIGSRDIEDMKGLINKMPVTTSITFVGILTLMAAPFGMLVSKWLILEVA--A-GSI----II-SIILAIGSALTVLYYTRWIGNILSGT------------------------YFTKKEQERMDVPV-GISLYSLTGLAVILSLMIVSLYNMLV-IPQIVN--MK-MD------VA-LKAAR----GYL------YTAS-------GGFMIYPIF-LTIGLAIVLAV--ISIQK---ASKTAVKVTPYNAGLNYV---EEKSF----------DVKNYYLTTFATEKTLTKYFNYV-SIALI---AVIL--------GGAI-L----
	'Coprothermobacter platensis WP_018962517.1'                -------------------------MQISLLLNVLLPFISAVIVYFLKNERM----RN-IVIIATALVVMASS---VVI----AVYGYN--T-F--AGHPLGNINLDRWIAIGDLLLSLYILYISVS--------LKNAMLILLTLLQLIPMFVFENF--SGANLDVL-HPIYADHLSVIMNLIVSFVGTLIWIYAISYMREDE-EHKGIR--PSRQNRFFFILLLFIGAMNALIFSNDLIWV-YFFWEITTISSFLLIGHDRTAEAKQSSTRALLLNSIGGVMFVIGIILGYH---F--FNT----VDIQTLISHRA----------SG-MLLLPFAFLCLAAFTKSAQIPFQSWLLGAMVAPTPVSALLHSSTMVKAGVYLILRLVPAFY----GSW-LAGVIAIFGAFTFITASLMAISQSNGKKILAYSTIANLGLIISAAAINSPVAVAAAIMLLIFHAISKALLFLCVGTIEHGIGSRDIEDMRGLINKMPFTTLITVIGLVTMLLPPFGVLLSKWLVIETA--A-KNP----LL-VFMIAIGSALTVVYYARWIGILLSRT-----------------------SSKDVVQHEKRDPFV-RIPLSVLAMLSIVISVTVTSIFNGLI-APQVVE--YF-HR------LG-VIAQE----GSI------GTSY-------GGFSLWPVF-LALALALLGGY--VVLKG---SN---QYAMPYAPGESAQEY-KVIKVAGKETKMPKAKVSNYYFSDVISENRLTPWLDVA-AAVLI---VAMF--------GVVI-L----
	'Thermoanaerobacter ethanolicus WP_003868937.1'             ------------------------MQSNLLLLSIIFPIIAGIIVLFLRQSSI----RK-VFIAVSLGVIILLS---LIM----LENLKV--PDI--FNSPAYYSGMDVAIKIGDFVLLLYVLYISFK--------IKEWRATFFAVLQLVPLIYFEFF--ILKEHEV--AMFLVDELSIIMNLIISIVGSLIALYAFGYMDHHE-EEKHVS--PTRQPRFFAIILIFIGAMNGVVFSNNLMWM-YFFWEVTTLSSFMLISHDQTEEAIRNAARALWINMMGGFALLLGIIFIYT---N--YNT----ISLVDVLSIKD----------TA-YILLPMFFIAFAAFTKSAQLPFQSWLLGAMVAPTPVSALLHSSTMVKAGIYILLRFSPLFR----GTL-LSDFIAIYGAFTFIATAFLAISQSNAKRILAYSTVSNLGLMIASIGINTSSAIAAAILLLIFHAVSKALLFLCVGTIEQHIGSRDIEDMKGLVNRMPVTAAITFIGILTLMAAPFGMLVSKWLIIEVA--A-NQI----WI-SVILAIGSALTVLYYTRWIGNLLSGT------------------------YFSKRSEEHMNTTI-GISLYSLTAIAIVLSFAISTLYNMLV-MPQILN--MK-MD------VA-LKAVK----GYL------YTSN-------GGFTIYPIF-ITIGIAIVLSL--ISIRK---STRVAVKTTPYTAGLTYV---EEDGY----------DVKNYYLTTFATEGILTKYFNYI-SVALI---AVIL--------GGAI-L----
	'Thermoanaerobacter indiensis WP_019907183.1'               ------------------------MQSNLLLLSIIFPIIAGIIVLFLRQSSI----RK-AFIAASLGVIVLLS---LIM----LATLKV--PDI--FNSPAYYNGMDVAIKIGDFALLLYVLYISFK--------IKEWRATFFAVLQLVPLIYFEFF--MLKEHEV--AMFLVDELSIIMNLIISIVGSLIALYAFGYMDHHE-EEKHVS--PTRQPRFFAIILIFLGAMNGVVFSNNLMWM-YFFWEVTTLSSFMLISHDQTEEAIRNAARALWINMMGGFALLLGIIFIYT---N--YNT----ISLVDVLSIKD----------TA-YILLPMFFIAFAAFTKSAQLPFQSWLLGAMVAPTPVSALLHSSTMVKAGIYVLLRFSPLFR----STL-LSDFIAIYGAFTFLATAFLAISQSNAKRILAYSTVSNLGLMIASIGINTSSAIAAAILLLIFHAVSKALLFLCVGTIEQHIGSRDIEDMKGLVNRMPVTAAITFIGILTLMAAPFGMLVSKWLIIEVA--A-NQI----WI-SVILAIGSALTVLYYTRWIGNLLSGT------------------------YFSKRSEEHMNTTI-GISIYSLTAIAIVLSFAISTLYNMLV-MPQILN--MK-MD------VA-LKAVK----GYL------YTSN-------GGFTIYPIF-ITIGIAIVLSL--ISIRK---STRVAVKTTPYTAGLTYV---EEDEY----------DVKNYYLTTFATEGILTKYFNYI-SVALI---AVIL--------GGAI-L----
	'Thermoanaerobacter italicus YP_003477430.1'                ------------------------MHSNLLLLSTVLPIIAGIIILFLRQPFI----RK-AFIVVSLSVIVALS---LIM----LTTLKV--PDV--FNYMTYYNVMDLAIKVGDFVLLLYVIYISFK--------IKEWKATFFAVLQLVPLIYFEFF--RLKEHKI--AMFFVDELSIIMNLIISIVGSLIAIYAFGYMDHHE-EEKKVC--PTRQPRFFAIILVFLGAMNGIVFSNNLMWM-YFFWEITTLSSFLLIGHDQTEGAIKNASRALWINMMGGFALLLGIIFIYT---N--YNT----ISLVEVLSIKD----------AT-YILLPMFFIAFAAFTKSAQLPFESWLLGAMVAPTPVSALLHSSTMVKAGIYILLRFSPLFR----GTL-LSDFIAIYGAFTFIATAFLAVSQSNAKRILAYSTVSNLGLMIASIGLNTSGAIAAAILLLIFHAVSKALLFLCVGTIEQHIGSRNIEDMKGLINRMPVTTIITFIGILTLMAAPFGMLVSKWLIIEVA--A-KQI----LI-SLILAIGSALTVFYYTRWIGNLLSGT------------------------YFSKRSEERMNSTI-GISLYSLTAIAIVLSFIVSNLYNMLV-MPQILT--MK-MN------VA-LKAVR----GYL------YTSA-------GGFTIYPIF-ITLGIAIVLSL--ISIRK---ASGIAVKTVPYTAGLNYI---EDSGY----------NVKNYYFTTFTNEGTLTKYFNYV-SILLI---AVIL--------GGAL-L----
	'Thermoanaerobacter mathranii YP_003677326.1'               ------------------------MQSNLLLLGTILPIIAGIIILFLRQPFI----RK-AFIVVSLSVIVVLS---LIM----LTTLKV--PDV--FNYMTYYNVMDLAIKVGDFVLLLYVIYISFK--------IKEWKATFFAVLQLVPLIYFEFF--KLKEHKI--AMFFVDELSIIMNLIISIVGSLIAIYAFGYMDHHE-EEKKVS--PTRQPRFFAIILVFLGAMNGIVFSNNLMWM-YFFWEITTLSSFLLIGHDQTEGAIKNASRALWINMMGGFALLLGIIFIYT---N--YNT----ISLVEVLSIKD----------AT-YILLPMFFIAFAAFTKSAQLPFESWLLGAMVAPTPVSALLHSSTMVKAGIYILLRFSPLFR----GTL-LSDFIAIYGAFTFIATAFLAVSQSNAKRILAYSTVSNLGLMIASIGLNTSGAIAAAILLLIFHAVSKALLFLCVGTIEQHIGSRNIEDMKGLINRMPVTTIITFIGILTLMAAPFGMLVSKWLIIEVA--A-KQI----LI-SLILAIGSALTVFYYTRWIGNLLSGT------------------------YFSKRSEERMNSTI-GISLYSLTAIAIVLSFIVSNLYNMLV-VPQILT--MK-MN------VA-LKAVR----GYL------YTSA-------GGFTIYPIF-ITLGIAIVLSL--ISIRK---ASGIAVKTVPYTAGLNYI---EDSGY----------NVKNYYFTTFTNEGTLTKYFNYV-SILLI---AVIL--------GGAM-L----
	'Thermoanaerobacter siderophilus WP_006569903.1'            ------------------------MQSNLLLLSIIFPIIAGIIVLFLRQSSI----RK-AFIAASLGVIVLLS---LIM----LATLKV--PDI--FNSPAYYNGMDVAIKIGDFALLLYVLYISFK--------IKEWRATFFAVLQLVPLIYFEFF--MLKEHEV--AMFLVDELSIIMNLIISIVGSLIALYAFGYMDHHE-EEKHVS--PTRQPRFFAIILIFLGAMNGVVFSNNLMWM-YFFWEVTTLSSFMLISHDQTEEAIRNAARALWINMMGGFALLLGIIFIYT---N--YNT----ISLVDVLSIKD----------TA-YILLPMFFIAFAAFTKSAQLPFQSWLLGAMVAPTPVSALLHSSTMVKAGIYVLLRFSPLFR----STL-LSDFIAIYGAFTFLATAFLAISQSNAKRILAYSTVSNLGLMIASIGINTSSAIAAAILLLIFHAVSKALLFLCVGTIEQHIGSRDIEDMKGLVNRMPVTAAITFIGILTLMAAPFGMLVSKWLIIEVA--A-NQI----WI-SVILAIGSALTVLYYTRWIGNLLSGT------------------------YFSKRSEEHMNTTI-GVSLYSLTAIAIVLSFAISTLYNMLV-MPQILN--MK-MD------VA-LKAVK----GYL------YTSN-------GGFTIYPIF-ITIGIAIVLSL--ISIRK---STRVAVKTTPYTAGLTYV---EEDGY----------DVKNYYLTTFATEGILTKYFNYI-SVALI---AVIL--------GGAI-L----
	'Thermoanaerobacter thermohydrosulfuricus WP_004399991.1'   ------------------------MQSNLLLLSIIFPIIAGIIVLFLRQSSI----RK-AFIAASLGVIVLLS---LIM----LATLKV--PDI--FNSPAYYNGMDVAIKIGDFALLLYVLYISFK--------IKEWRATFFAVLQLVPLIYFEFF--MLKEHEV--AMFLVDELSIIMNLIISIVGSLIALYAFGYMDHHE-EEKHVS--PTRQPRFFAIILIFLGAMNGVVFSNNLMWM-YFFWEVTTLSSFMLISHDQTEEAIRNAARALWINMMGGFALLLGIIFIYT---N--YNT----ISLVDVLSIKD----------TA-YILLPMFFIAFAAFTKSAQLPFQSWLLGAMVAPTPVSALLHSSTMVKAGIYVLLRFSPLFR----STL-LSDFIAIYGAFTFLATAFLAISQSNAKRILAYSTVSNLGLMIASIGINTSSAIAAAILLLIFHAVSKALLFLCVGTIEQHIGSRDIEDMKGLVNRMPVTAAITFIGILTLMAAPFGMLVSKWLIIEVA--A-NQI----WI-SVILAIGSALTVLYYTRWIGNLLSGT------------------------YFSKRSEEHMNTTI-GISIYSLTAIAIVLSFAISTLYNMLV-MPQILN--MK-MD------VA-LKAVK----GYL------YTSN-------GGFTIYPIF-ITIGIAIVLSL--ISIRK---STRVAVKTTPYTAGLTYV---EEDGY----------DVKNYYLTTFATEGILTKYFNYI-SVALI---AVIL--------GGAI-L----
	'Thermoanaerobacter wiegelii YP_004818928.1'                ------------------------MQSNLLLLSIIFPIIAGIIVLFLRQSSI----RK-AFIAASLGVIVLLS---LIM----LATLKV--PDI--FNSPAYYNGMDVAIKIGDFALLLYVLYISFK--------IKEWRATFFAVLQLVPLIYFEFF--MLKEHEV--AMFLVDELSIIMNLIISIVGSLIALYAFGYMDHHE-EEKHVS--PTRQPRFFAIILIFLGAMNGVVFSNNLMWM-YFFWEVTTLSSFMLISHDQTEEAIRNAARALWINMMGGFALLLGIIFIYT---N--YNT----ISLVDVLSIKD----------TA-YILLPMFFIAFAAFTKSAQLPFQSWLLGAMVAPTPVSALLHSSTMVKAGIYVLLRFSPLFR----STL-LSDFIAIYGAFTFLATAFLAISQSNAKRILAYSTVSNLGLMIASIGINTSSAIAAAILLLIFHAVSKALLFLCVGTIEQHIGSRDIEDMKGLVNRMPVTAAITFIGILTLMAAPFGMLVSKWLIIEVA--A-NQI----WI-SVILAIGSALTVLYYTRWIGNLLSGT------------------------YFSKRSEEHMNTTI-GISLYSLTAIAIVLSFAISTLYNMLV-MPQILN--MK-MD------VA-LKAVK----GYL------YTSN-------GGFTIYPIF-ITIGIAIVLSL--ISIRK---STRVAVKTTPYTAGLTYV---EEDGY----------DVKNYYLTTFATEGILTKYFNYI-SVALI---AVIL--------GGAI-L----
	'Thermoanaerobacterium saccharolyticum YP_006391298.1'      ------------------------MASDLVLISIVVPIVMSLITITIGKASA----RK-VFVSATLLIVFLSS---LAI----FKTANL--PAV---IGTSYYGIIDKLIKVGDYVLLLYTLYVSFK--------VKEPKIAIFSILQILPLAYFELF--VLKEQEV--SAFYIDNLSIIMNLVVSIVGPIIALYAFGYMDHHE-KEEKLV--KSRQSRFFAVILLFFGAMNGIIFSNNLMWL-YFFWEITSLSSFLLISHDKTEVAIKNASRALWINMFGGFSLLVGIIILYK---Y--TGM----ITLDAVLKSDT----------SY-ILLIPVAFMVLGAFTKSAQMPFQSWLLGAMVAPTPVSALLHSSTMVKAAIYLILRLAPTFR----GTT-LSGFIALYGAFTFIATSILALSQSNGKKILAYSTIANLGLMISSIGINTSSAITAAILLLIFHAVSKALLFLCVGTIEQNIGSRDIEDMKGLITKMPVTTIITFIGILSLMIAPFGMLLSKWMAIEAA--S-RNL----LV-ALLLILGSAITVMYYTRWIGNILSEG------------------------HNSKFFVEKQPTTV-KFALYSLVTIAIVLSLAVTQLFNAIV-KPEINM--LK-MS------IS-IKAAA----GYL------ESNL-------GGFSIYPVF-FAIGLAVILAF--LTIRN---SRDI-VETKPYEAGLNYDD--SNNGY----------DVKNYYLPGIINEEKMTKYMNYI-SFILI---LAVF--------GGIL-L----
	'Thermoanaerobacterium thermosaccharolyticum YP_003850790.1' ------------------------MSSDLILISIVIPIVMSLITITTGKSLA----RK-TIVSATLLIILLSA---LAM----LKVVNV--PTV---INTSFYGIIDKLIKVGDYILLLYTLYISFK--------VREPKIAIFAILQILPLAFFELF--MLKEQEV--NTFYIDNLSIIMNLVVSVVGPIIAVYAFGYMYHHE-EEKKLT--KSRQSRFFAIILLFIGAMNGIIFSNNLMWI-YFFWEITSLSSFLLISHDKTDEAIRNASRALWINMLGGFSLLVGIIILYK---Y--TGI----ITLDALLKTNS----------SY-ILLVPVFFMVLAAFTKSAQMPFQSWLLGAMVAPTPVSALLHSSTMVKAAIYLILRLAPTFR----GTT-LSSFIALYGAFTFIATSILALSQSNAKKILAYSTIANLGLMISSIGINTSSAITAAILLLIFHAVSKALLFLCVGTIEQKIGSRDIEDMKGLITKMPVTTIITFIGILSLMIAPFGMLLSKWMAIEAA--S-KNL----VV-ALLLIIGSAVTVMYYTRWIGNILSEG------------------------RNSKFFIEKQPSTI-RFALYSLVTIAIVLSLAVTQLFNTIV-KPEINM--LK-MS------VS-VKAAS----GYL------ESNL-------GGFTIYPVF-FAIGLAIILAI--LTIKN---SRDI-VQTTPYESGLNYDD--SKNGY----------DIKNYYLPSIINETVMTKYMNYI-SLILI---LAIF--------GGIL-L----
	'Thermoanaerobacterium thermosaccharolyticum YP_007297548.1' ------------------------MSSNLILISIIVPIVMSLITITIGKSLA----RK-TIVSATLLIVLLSA---LAM----LKVVNV--PTV---INTSFYGIIDKLIKVGDYILLLYTLYISFK--------VREPKISIFAILQILPLAFFELF--MLKEQEV--NTFYIDNLSIIMNLVVSVVGPIIAVYAFGYMYHHE-EEKKLA--KSRQSRFFAIILLFIGAMNGIIFSNNLMWI-YFFWEITSLSSFLLISHDKTEEAIRNASRALWINMLGGFSLLVGIIILYK---Y--TGI----ITLDALLKTNS----------SY-ILLVPVFFMVLAAFTKSAQMPFQSWLLGAMVAPTPVSALLHSSTMVKAAIYLILRLAPTFR----GTT-LSSFIALYGAFTFIATSVLALSQSNAKKILAYSTIANLGLMISSIGINTSSAITAAILLLIFHAVSKALLFLCVGTIEQKIGSRDIEDMKGLITKMPVTTIITFIGILSLMIAPFGMLLSKWMAIEAA--S-KNL----VV-ALLLIIGSAVTVMYYTRWIGNILSEG------------------------RNSKFFVEKQPSTI-RFALYSLVTIAIVLSLAVTQLFNTIV-KPEINM--LK-MS------VS-VKAAS----GYL------ESNL-------GGFTIYPVF-FAIGLAIILAI--LTIKN---SRDI-VQTTPYESGLNYDD--SKNGY----------DIKNYYLPSIINEAVMTKYMNYI-SLILI---LAIF--------GGIL-L----
	'Thermoanaerobacterium xylanolyticum YP_004469841.1'        ------------------------MASDLVLISIIVPIVMSLITITIGKASA----RK-VFVLATLLIVFLSS---LAI----FKTVNL--PAV---IGTSYYGIIDKLIKVGDYVLLLYTLYVSFK--------VKEPKIAIFSILQILPLAYFELF--VLKEQEV--SAFYIDNLSIIMNLVVSIVGPIIALYAFGYMDHHE-KEEKLV--KSRQSRFFAVILLFFGAMNGIIFSNNLMWL-YFFWEITSLSSFLLISHDKTEVAIKNASRALWINMFGGFSLLVGIIILYK---Y--TGM----ITLDAVLKSDT----------SY-ILLIPVAFMVLGAFTKSAQMPFQSWLLGAMVAPTPVSALLHSSTMVKAAIYLILRLAPTFR----GTT-LSGFIALYGAFTFIATSILALSQSNGKKILAYSTIANLGLMISSIGINTSSAITAAILLLIFHAVSKALLFLCVGTIEQNIGSRDIEDMKGLITKMPVTTIITFIGILSLMIAPFGMLLSKWMAIEAA--S-RNL----LV-ALLLILGSAITVMYYTRWIGNILSEG------------------------HNSKFFVEKQPSTI-KFALYSLVTIAIVLSLAVTQLFNAIV-KPEINM--LK-MS------IS-VKAAS----GYL------ESNL-------GGFSIYPVF-FAIGLAVILAF--LTIRN---SRDI-VETKPYEAGLNYDD--SNNGY----------DVKNYYLPSIINEEKLTKYMNYI-SFILI---LAVF--------GGIL-L----

;


END;

BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1 -  806;

END;

BEGIN NOTES;

	TAXABITS   TAXA = Taxa NAME = newlyAddedTaxon on =  1 -  14;

END;

BEGIN CODONS;
	CODESET * UNTITLED   =  universal:  1 -  806;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Mk1 (est.)':  1 -  806;
END;

BEGIN TREES;
	Title 'Trees from "echA.tre"';
	LINK Taxa = Taxa;
	TRANSLATE
[0] 		n0 'Caldanaerobacter subterraneus tengcongensis_NP_621823.1',
[1] 		n1 'Caldanaerobacter subterraneus yonseiensis_ERM91334.1',
[2] 		n2 'Coprothermobacter platensis WP_018962517.1',
[3] 		n3 'Thermoanaerobacter ethanolicus WP_003868937.1',
[4] 		n4 'Thermoanaerobacter indiensis WP_019907183.1',
[5] 		n5 'Thermoanaerobacter italicus YP_003477430.1',
[6] 		n6 'Thermoanaerobacter mathranii YP_003677326.1',
[7] 		n7 'Thermoanaerobacter siderophilus WP_006569903.1',
[8] 		n8 'Thermoanaerobacter thermohydrosulfuricus WP_004399991.1',
[9] 		n9 'Thermoanaerobacter wiegelii YP_004818928.1',
[10] 		n10 'Thermoanaerobacterium saccharolyticum YP_006391298.1',
[11] 		n11 'Thermoanaerobacterium thermosaccharolyticum YP_003850790.1',
[12] 		n12 'Thermoanaerobacterium thermosaccharolyticum YP_007297548.1',
[13] 		n13 'Thermoanaerobacterium xylanolyticum YP_004469841.1';
	TREE tree_1 = (n2:0.486299,(((n10:0.007277,n13:0.003489)0.9640:0.055893,(n11:0.00671,n12:0.003886)0.9710:0.044717)0.9990:0.219575,(((n1:0.003801,n0:0.001589)1.0000:0.119945,(n3:0.008662,(((n8:0.000001,n4:0.000001)0.9120:0.001789,n9:0.000001)0.0000:0.000001,n7:0.00179)0.9510:0.009442)0.9950:0.043324)0.5540:0.030522,(n6:0.002193,n5:0.001386)0.9640:0.038375)1.0000:0.217503)1.0000:0.306674)root;

END;


Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		timeSaved 1440560886839;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			setID 0 3459147892276317522;
			tell It;
				setDefaultOrder  6 5 0 7 9 13 12 11 8 10 1 3 4 2;
				attachments ;
			endTell;
		endTell;
		getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
		tell It;
			setID 0 7323015080331212360;
			mqVersion 304;
			checksumv 0 3 2223610233 null  getNumChars 806 numChars 806 getNumTaxa 14 numTaxa 14   short false   bits 1048575   states 1048575   sumSquaresStatesOnly 1.28672493047182E14 sumSquares 1.28672493047182E14 longCompressibleToShort false usingShortMatrix false   NumFiles 1 NumMatrices 1;
			mqVersion;
		endTell;
		getWindow;
		tell It;
			suppress;
			setResourcesState false false 234;
			setPopoutState 300;
			setExplanationSize 0;
			setAnnotationSize 0;
			setFontIncAnnot 0;
			setFontIncExp 0;
			setSize 765 584;
			setLocation 61 62;
			setFont SanSerif;
			setFontSize 10;
			getToolPalette;
			tell It;
			endTell;
			desuppress;
		endTell;
		getEmployee  #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			showTaxa #3459147892276317522 #mesquite.lists.TaxonList.TaxonList;
			tell It;
				setTaxa #3459147892276317522;
				getWindow;
				tell It;
					newAssistant  #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					setSize 531 512;
					setLocation 61 62;
					setFont SanSerif;
					setFontSize 10;
					getToolPalette;
					tell It;
						setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam;
					endTell;
					setActive;
				endTell;
				showWindow;
				getEmployee #mesquite.lists.ColorTaxon.ColorTaxon;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel;
				tell It;
					togglePanel off;
				endTell;
			endTell;
		endTell;
		getEmployee  #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord;
		tell It;
			showDataWindow #7323015080331212360 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker;
			tell It;
				getWindow;
				tell It;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					setSize 531 512;
					setLocation 61 62;
					setFont SanSerif;
					setFontSize 10;
					getToolPalette;
					tell It;
					endTell;
					setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow;
					colorCells  #mesquite.charMatrices.ColorByState.ColorByState;
				tell It;
					setStateLimit 9;
					toggleUniformMaximum on;
				endTell;
					colorRowNames  #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor;
					colorColumnNames  #mesquite.charMatrices.CharGroupColor.CharGroupColor;
					colorText  #mesquite.charMatrices.NoColor.NoColor;
					setBackground White;
					toggleShowNames on;
					toggleShowTaxonNames on;
					toggleTight off;
					toggleThinRows off;
					toggleShowChanges off;
					toggleSeparateLines off;
					toggleShowStates on;
					toggleAutoWCharNames off;
					toggleAutoTaxonNames off;
					toggleShowDefaultCharNames off;
					toggleConstrainCW on;
					toggleBirdsEye off;
					toggleShowPaleGrid off;
					toggleShowPaleCellColors off;
					toggleShowPaleExcluded off;
					togglePaleInapplicable on;
					toggleShowBoldCellText off;
					toggleAllowAutosize off;
					toggleColorsPanel off;
					toggleLinkedScrolling on;
					toggleScrollLinkedTables off;
				endTell;
				showWindow;
				getWindow;
				tell It;
					forceAutosize;
				endTell;
				getEmployee #mesquite.charMatrices.ColorCells.ColorCells;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel;
				tell It;
					togglePanel off;
				endTell;
				getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector;
				tell It;
					autotabOff;
				endTell;
				getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.align.AlignToDropped.AlignToDropped;
				tell It;
					gapCosts 8 3 2 2;
					subCosts  5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5;
				endTell;
				getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor;
				tell It;
					panelOpen false;
				endTell;
			endTell;
		endTell;
		endTell;
end;